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Code Sample 1: public static boolean isSameHttpContent(final String url, final File localFile, UsernamePasswordCredentials creds) throws IOException { if (localFile.isFile()) { long localContentLength = localFile.length(); long localLastModified = localFile.lastModified() / 1000; long contentLength = -1; long lastModified = -1; HttpClient httpclient = createHttpClient(creds); try { HttpHead httphead = new HttpHead(url); HttpResponse response = httpclient.execute(httphead); if (response != null) { StatusLine statusLine = response.getStatusLine(); int status = statusLine.getStatusCode() / 100; if (status == 2) { Header lastModifiedHeader = response.getFirstHeader("Last-Modified"); Header contentLengthHeader = response.getFirstHeader("Content-Length"); if (contentLengthHeader != null) { contentLength = Integer.parseInt(contentLengthHeader.getValue()); } if (lastModifiedHeader != null) { SimpleDateFormat formatter = new SimpleDateFormat("EEE, dd MMM yyyy HH:mm:ss zzz"); formatter.setDateFormatSymbols(new DateFormatSymbols(Locale.US)); try { lastModified = formatter.parse(lastModifiedHeader.getValue()).getTime() / 1000; } catch (ParseException e) { logger.error(e); } } } else { return true; } } } finally { httpclient.getConnectionManager().shutdown(); } if (logger.isDebugEnabled()) { logger.debug("local:" + localContentLength + " " + localLastModified); logger.debug("remote:" + contentLength + " " + lastModified); } if (contentLength != -1 && localContentLength != contentLength) return false; if (lastModified != -1 && lastModified != localLastModified) return false; if (contentLength == -1 && lastModified == -1) return false; return true; } return false; } Code Sample 2: public static void copyFile(String oldPath, String newPath) throws IOException { int bytesum = 0; int byteread = 0; File oldfile = new File(oldPath); if (oldfile.exists()) { InputStream inStream = new FileInputStream(oldPath); FileOutputStream fs = new FileOutputStream(newPath); byte[] buffer = new byte[1444]; while ((byteread = inStream.read(buffer)) != -1) { bytesum += byteread; fs.write(buffer, 0, byteread); } inStream.close(); } }
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Code Sample 1: @Override protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException { String contentType = req.getParameter("type"); String arg = req.getParameter("file"); if (arg == null) { resp.sendError(404, "Missing File Arg"); return; } File f = new File(arg); if (!f.exists()) { resp.sendError(404, "Missing File: " + f); return; } if (contentType != null) { resp.setContentType(contentType); } log.debug("Requested File: " + f + " as type: " + contentType); resp.setContentLength((int) f.length()); FileInputStream fis = null; try { fis = new FileInputStream(f); OutputStream os = resp.getOutputStream(); IOUtils.copyLarge(fis, os); os.flush(); fis.close(); } catch (Throwable e) { log.error("Failed to send file: " + f); resp.sendError(500, "Failed to get file " + f); } finally { IOUtils.closeQuietly(fis); } } Code Sample 2: @Override public boolean setupDatabaseSchema() { Configuration cfg = Configuration.getInstance(); Connection con = getConnection(); if (null == con) return false; try { String sql = FileTool.readFile(cfg.getProperty("database.sql.rootdir") + System.getProperty("file.separator") + cfg.getProperty("database.sql.mysql.setupschema")); sql = sql.replaceAll(MYSQL_SQL_SCHEMA_REPLACEMENT, StateSaver.getInstance().getDatabaseSettings().getSchema()); con.setAutoCommit(false); Statement stmt = con.createStatement(); String[] sqlParts = sql.split(";"); for (String sqlPart : sqlParts) { if (sqlPart.trim().length() > 0) stmt.executeUpdate(sqlPart); } con.commit(); JOptionPane.showMessageDialog(null, language.getProperty("database.messages.executionsuccess"), language.getProperty("dialog.information.title"), JOptionPane.INFORMATION_MESSAGE); return true; } catch (SQLException e) { Logger.logException(e); } try { if (con != null) con.rollback(); } catch (SQLException e) { Logger.logException(e); } JOptionPane.showMessageDialog(null, language.getProperty("database.messages.executionerror"), language.getProperty("dialog.error.title"), JOptionPane.ERROR_MESSAGE); return false; }
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Code Sample 1: public void testHttpPostsWithExpectContinue() throws Exception { int reqNo = 20; Random rnd = new Random(); List testData = new ArrayList(reqNo); for (int i = 0; i < reqNo; i++) { int size = rnd.nextInt(5000); byte[] data = new byte[size]; rnd.nextBytes(data); testData.add(data); } this.server.registerHandler("*", new HttpRequestHandler() { public void handle(final HttpRequest request, final HttpResponse response, final HttpContext context) throws HttpException, IOException { if (request instanceof HttpEntityEnclosingRequest) { HttpEntity incoming = ((HttpEntityEnclosingRequest) request).getEntity(); byte[] data = EntityUtils.toByteArray(incoming); ByteArrayEntity outgoing = new ByteArrayEntity(data); outgoing.setChunked(true); response.setEntity(outgoing); } else { StringEntity outgoing = new StringEntity("No content"); response.setEntity(outgoing); } } }); this.server.start(); this.client.getParams().setBooleanParameter(CoreProtocolPNames.USE_EXPECT_CONTINUE, true); DefaultHttpClientConnection conn = new DefaultHttpClientConnection(); HttpHost host = new HttpHost("localhost", this.server.getPort()); try { for (int r = 0; r < reqNo; r++) { if (!conn.isOpen()) { Socket socket = new Socket(host.getHostName(), host.getPort()); conn.bind(socket, this.client.getParams()); } BasicHttpEntityEnclosingRequest post = new BasicHttpEntityEnclosingRequest("POST", "/"); byte[] data = (byte[]) testData.get(r); ByteArrayEntity outgoing = new ByteArrayEntity(data); outgoing.setChunked(true); post.setEntity(outgoing); HttpResponse response = this.client.execute(post, host, conn); byte[] received = EntityUtils.toByteArray(response.getEntity()); byte[] expected = (byte[]) testData.get(r); assertEquals(expected.length, received.length); for (int i = 0; i < expected.length; i++) { assertEquals(expected[i], received[i]); } if (!this.client.keepAlive(response)) { conn.close(); } } HttpConnectionMetrics cm = conn.getMetrics(); assertEquals(reqNo, cm.getRequestCount()); assertEquals(reqNo, cm.getResponseCount()); } finally { conn.close(); this.server.shutdown(); } } Code Sample 2: private static void checkClients() { try { sendMultiListEntry('l'); } catch (Exception e) { if (Util.getDebugLevel() > 90) e.printStackTrace(); } try { if (CANT_CHECK_CLIENTS != null) KeyboardHero.removeStatus(CANT_CHECK_CLIENTS); URL url = new URL(URL_STR + "?req=clients" + (server != null ? "&port=" + server.getLocalPort() : "")); URLConnection connection = url.openConnection(getProxy()); connection.setRequestProperty("User-Agent", USER_AGENT); BufferedReader bufferedRdr = new BufferedReader(new InputStreamReader(connection.getInputStream())); String ln; if (Util.getDebugLevel() > 30) Util.debug("URL: " + url); while ((ln = bufferedRdr.readLine()) != null) { String[] parts = ln.split(":", 2); if (parts.length < 2) { Util.debug(12, "Line read in checkClients: " + ln); continue; } try { InetSocketAddress address = new InetSocketAddress(parts[0], Integer.parseInt(parts[1])); boolean notFound = true; if (Util.getDebugLevel() > 25) Util.debug("NEW Address: " + address.toString()); synchronized (clients) { Iterator<Client> iterator = clients.iterator(); while (iterator.hasNext()) { final Client client = iterator.next(); if (client.socket.isClosed()) { iterator.remove(); continue; } if (Util.getDebugLevel() > 26 && client.address != null) Util.debug("Address: " + client.address.toString()); if (address.equals(client.address)) { notFound = false; break; } } } if (notFound) { connectClient(address); } } catch (NumberFormatException e) { } } bufferedRdr.close(); } catch (MalformedURLException e) { Util.conditionalError(PORT_IN_USE, "Err_PortInUse"); Util.error(Util.getMsg("Err_CantCheckClients")); } catch (FileNotFoundException e) { Util.error(Util.getMsg("Err_CantCheckClients_Proxy"), Util.getMsg("Err_FileNotFound")); } catch (SocketException e) { Util.error(Util.getMsg("Err_CantCheckClients_Proxy"), e.getLocalizedMessage()); } catch (Exception e) { CANT_CHECK_CLIENTS.setException(e.toString()); KeyboardHero.addStatus(CANT_CHECK_CLIENTS); } }
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Code Sample 1: public static final String enctrypt(String password) { MessageDigest md = null; byte[] byteHash = null; StringBuffer resultString = new StringBuffer(); try { md = MessageDigest.getInstance("SHA1"); } catch (NoSuchAlgorithmException e) { System.out.println("NoSuchAlgorithmException caught!"); throw new RuntimeException("NoSuchAlgorithmException SHA1"); } md.reset(); md.update(password.getBytes()); byteHash = md.digest(); for (int i = 0; i < byteHash.length; i++) { resultString.append(Integer.toHexString(0xFF & byteHash[i])); } return (resultString.toString()); } Code Sample 2: private static String digest(String myinfo) { try { MessageDigest alga = MessageDigest.getInstance("SHA"); alga.update(myinfo.getBytes()); byte[] digesta = alga.digest(); return byte2hex(digesta); } catch (Exception ex) { return myinfo; } }
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Code Sample 1: public File extractID3v2TagDataIntoFile(File outputFile) throws TagNotFoundException, IOException { int startByte = (int) ((MP3AudioHeader) audioHeader).getMp3StartByte(); if (startByte >= 0) { FileInputStream fis = new FileInputStream(file); FileChannel fc = fis.getChannel(); ByteBuffer bb = ByteBuffer.allocate(startByte); fc.read(bb); FileOutputStream out = new FileOutputStream(outputFile); out.write(bb.array()); out.close(); fc.close(); fis.close(); return outputFile; } throw new TagNotFoundException("There is no ID3v2Tag data in this file"); } Code Sample 2: public static void copyFile(File source, File destination) throws IOException { FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(destination).getChannel(); long size = in.size(); MappedByteBuffer buffer = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buffer); } finally { if (in != null) { in.close(); } if (out != null) { out.close(); } } }
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Code Sample 1: public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } Code Sample 2: public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } }
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Code Sample 1: private static String retrieveVersion(InputStream is) throws RepositoryException { ByteArrayOutputStream buffer = new ByteArrayOutputStream(); try { IOUtils.copy(is, buffer); } catch (IOException e) { throw new RepositoryException(exceptionLocalizer.format("device-repository-file-missing", DeviceRepositoryConstants.VERSION_FILENAME), e); } return buffer.toString().trim(); } Code Sample 2: public static final void copyFile(File source, File destination) throws IOException { FileChannel sourceChannel = new FileInputStream(source).getChannel(); FileChannel targetChannel = new FileOutputStream(destination).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), targetChannel); sourceChannel.close(); targetChannel.close(); }
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Code Sample 1: public static String encodeByMd5(String str) { try { if (str == null) { str = ""; } MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(str.getBytes("utf-8")); byte[] b = md5.digest(); int i; StringBuffer buff = new StringBuffer(""); for (int offset = 0; offset < b.length; offset++) { i = b[offset]; if (i < 0) { i += 256; } if (i < 16) { buff.append("0"); } buff.append(Integer.toHexString(i)); } return buff.toString(); } catch (Exception e) { return str; } } Code Sample 2: public void testDecodeJTLM_publish100() throws Exception { EXISchema corpus = EXISchemaFactoryTestUtil.getEXISchema("/JTLM/schemas/TLMComposite.xsd", getClass(), m_compilerErrors); Assert.assertEquals(0, m_compilerErrors.getTotalCount()); GrammarCache grammarCache = new GrammarCache(corpus, GrammarOptions.DEFAULT_OPTIONS); String[] exiFiles = { "/JTLM/publish100/publish100.bitPacked", "/JTLM/publish100/publish100.byteAligned", "/JTLM/publish100/publish100.preCompress", "/JTLM/publish100/publish100.compress" }; for (int i = 0; i < Alignments.length; i++) { AlignmentType alignment = Alignments[i]; EXIDecoder decoder = new EXIDecoder(); Scanner scanner; decoder.setAlignmentType(alignment); URL url = resolveSystemIdAsURL(exiFiles[i]); int n_events, n_texts; decoder.setEXISchema(grammarCache); decoder.setInputStream(url.openStream()); scanner = decoder.processHeader(); ArrayList<EXIEvent> exiEventList = new ArrayList<EXIEvent>(); EXIEvent exiEvent; n_events = 0; n_texts = 0; while ((exiEvent = scanner.nextEvent()) != null) { ++n_events; if (exiEvent.getEventVariety() == EXIEvent.EVENT_CH) { String stringValue = exiEvent.getCharacters().makeString(); if (stringValue.length() == 0 && exiEvent.getEventType().itemType == EventCode.ITEM_SCHEMA_CH) { --n_events; continue; } if (n_texts % 100 == 0) { final int n = n_texts / 100; Assert.assertEquals(publish100_centennials[n], stringValue); } ++n_texts; } exiEventList.add(exiEvent); } Assert.assertEquals(10610, n_events); } }
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Code Sample 1: public void copyFile(File sourceFile, String toDir, boolean create, boolean overwrite) throws FileNotFoundException, IOException { FileInputStream source = null; FileOutputStream destination = null; byte[] buffer; int bytes_read; File toFile = new File(toDir); if (create && !toFile.exists()) toFile.mkdirs(); if (toFile.exists()) { File destFile = new File(toDir + "/" + sourceFile.getName()); try { if (!destFile.exists() || overwrite) { source = new FileInputStream(sourceFile); destination = new FileOutputStream(destFile); buffer = new byte[1024]; while (true) { bytes_read = source.read(buffer); if (bytes_read == -1) break; destination.write(buffer, 0, bytes_read); } } } catch (Exception exx) { exx.printStackTrace(); } finally { if (source != null) try { source.close(); } catch (IOException e) { } if (destination != null) try { destination.close(); } catch (IOException e) { } } } } Code Sample 2: public void refreshStatus() { if (!enabledDisplay) return; try { String url = getServerFortURL(); BufferedReader reader = new BufferedReader(new InputStreamReader(new URL(url).openStream())); String data = null; int counter = 0; while ((data = reader.readLine()) != null && counter < 9) { status[counter] = UNKNOWN; if (data.matches(".*_alsius.gif.*")) { status[counter] = ALSIUS; counter++; } if (data.matches(".*_syrtis.gif.*")) { status[counter] = SYRTIS; counter++; } if (data.matches(".*_ignis.gif.*")) { status[counter] = IGNIS; counter++; } } } catch (Exception exc) { for (int i = 0; i < status.length; i++) status[i] = UNKNOWN; } }
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Code Sample 1: @Override public Collection<IAuthor> doImport() throws Exception { progress.initialize(2, "Ściągam autorów amerykańskich"); String url = "http://pl.wikipedia.org/wiki/Kategoria:Ameryka%C5%84scy_autorzy_fantastyki"; UrlResource resource = new UrlResource(url); InputStream urlInputStream = resource.getInputStream(); StringWriter writer = new StringWriter(); IOUtils.copy(urlInputStream, writer); progress.advance("Parsuję autorów amerykańskich"); DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder builder = factory.newDocumentBuilder(); String httpDoc = writer.toString(); httpDoc = httpDoc.replaceFirst("(?s)<!DOCTYPE.+?>\\n", ""); httpDoc = httpDoc.replaceAll("(?s)<script.+?</script>", ""); httpDoc = "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>\n" + httpDoc; ByteArrayInputStream byteInputStream = new ByteArrayInputStream(httpDoc.getBytes("UTF-8")); Document doc = builder.parse(byteInputStream); ArrayList<String> authorNames = new ArrayList<String>(); ArrayList<IAuthor> authors = new ArrayList<IAuthor>(); XPathFactory xpathFactory = XPathFactory.newInstance(); XPath xpath = xpathFactory.newXPath(); NodeList list = (NodeList) xpath.evaluate("//ul/li/div/div/a", doc, XPathConstants.NODESET); for (int i = 0; i < list.getLength(); i++) { String name = list.item(i).getTextContent(); if (StringUtils.isNotBlank(name)) { authorNames.add(name); } } list = (NodeList) xpath.evaluate("//td/ul/li/a", doc, XPathConstants.NODESET); for (int i = 0; i < list.getLength(); i++) { String name = list.item(i).getTextContent(); if (StringUtils.isNotBlank(name)) { authorNames.add(name); } } for (String name : authorNames) { int idx = name.lastIndexOf(' '); String fname = name.substring(0, idx).trim(); String lname = name.substring(idx + 1).trim(); authors.add(new Author(fname, lname)); } progress.advance("Wykonano"); return authors; } Code Sample 2: public static void extract(final File destDir, final ZipInfo zipInfo, final IProgressMonitor monitor) throws IOException { if (!destDir.exists()) destDir.mkdirs(); for (String key : zipInfo.getEntryKeys()) { ZipEntry entry = zipInfo.getEntry(key); InputStream in = zipInfo.getInputStream(entry); File entryDest = new File(destDir, entry.getName()); entryDest.getParentFile().mkdirs(); if (!entry.isDirectory()) { OutputStream out = new FileOutputStream(new File(destDir, entry.getName())); try { IOUtils.copy(in, out); out.flush(); if (monitor != null) monitor.worked(1); } finally { IOUtils.closeQuietly(in); IOUtils.closeQuietly(out); } } } if (monitor != null) monitor.done(); }
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Code Sample 1: private static URL downloadFile(URL url, File destFile) throws Exception { try { URLConnection urlConnection = url.openConnection(); File tmpFile = null; try { tmpFile = File.createTempFile("remoteLib_", null); InputStream in = null; FileOutputStream out = null; try { in = urlConnection.getInputStream(); out = new FileOutputStream(tmpFile); IOUtils.copy(in, out); } finally { if (out != null) { out.close(); } if (in != null) { in.close(); } } FileUtils.copyFile(tmpFile, destFile); } finally { if (tmpFile != null) { tmpFile.delete(); } } URL localURL = destFile.toURI().toURL(); return localURL; } catch (Exception ex) { throw new RuntimeException("Could not download URL: " + url, ex); } } Code Sample 2: public static void copyFileStreams(File fromFile, File toFile) throws IOException { if (!fromFile.exists()) { return; } FileInputStream fis = new FileInputStream(fromFile); FileOutputStream fos = new FileOutputStream(toFile); int read = 0; byte[] buf = new byte[1024]; while (-1 != read) { read = fis.read(buf); if (read >= 0) { fos.write(buf, 0, read); } } fos.close(); fis.close(); }
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Code Sample 1: private static void backupFile(File file) { FileChannel in = null, out = null; try { if (!file.getName().endsWith(".bak")) { in = new FileInputStream(file).getChannel(); out = new FileOutputStream(new File(file.toString() + ".bak")).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } } catch (Exception e) { e.getMessage(); } finally { try { System.gc(); if (in != null) in.close(); if (out != null) out.close(); } catch (Exception e) { e.getMessage(); } } } Code Sample 2: public void createZip(String baseDir, String objFileName) throws Exception { logger.info("createZip: [ " + baseDir + "] [" + objFileName + "]"); baseDir = baseDir + "/" + timesmpt; File folderObject = new File(baseDir); if (folderObject.exists()) { List<?> fileList = getSubFiles(new File(baseDir)); ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(objFileName)); ZipEntry ze = null; byte[] buf = new byte[1024]; int readLen = 0; for (int i = 0; i < fileList.size(); i++) { File f = (File) fileList.get(i); ze = new ZipEntry(getAbsFileName(baseDir, f)); ze.setSize(f.length()); ze.setTime(f.lastModified()); zos.putNextEntry(ze); InputStream is = new BufferedInputStream(new FileInputStream(f)); while ((readLen = is.read(buf, 0, 1024)) != -1) { zos.write(buf, 0, readLen); } is.close(); } zos.close(); } else { throw new Exception("this folder isnot exist!"); } }
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Code Sample 1: public void writeTo(File f) throws IOException { if (state != STATE_OK) throw new IllegalStateException("Upload failed"); if (tempLocation == null) throw new IllegalStateException("File already saved"); if (f.isDirectory()) f = new File(f, filename); FileInputStream fis = new FileInputStream(tempLocation); FileOutputStream fos = new FileOutputStream(f); byte[] buf = new byte[BUFFER_SIZE]; try { int i = 0; while ((i = fis.read(buf)) != -1) fos.write(buf, 0, i); } finally { deleteTemporaryFile(); fis.close(); fos.close(); } } Code Sample 2: @Override protected void write(InputStream in, OutputStream out, javax.sound.sampled.AudioFormat javaSoundFormat) throws IOException { if (USE_JAVASOUND) { super.write(in, out, javaSoundFormat); } else { try { byte[] header = JavaSoundCodec.createWavHeader(javaSoundFormat); if (header == null) throw new IOException("Unable to create wav header"); out.write(header); IOUtils.copyStream(in, out); } catch (InterruptedIOException e) { logger.log(Level.FINE, "" + e, e); throw e; } catch (IOException e) { logger.log(Level.WARNING, "" + e, e); throw e; } } }
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Code Sample 1: public static void copy(File source, File destination) { try { FileInputStream fileInputStream = new FileInputStream(source); FileOutputStream fileOutputStream = new FileOutputStream(destination); FileChannel inputChannel = fileInputStream.getChannel(); FileChannel outputChannel = fileOutputStream.getChannel(); transfer(inputChannel, outputChannel, source.length(), 1024 * 1024 * 32, true, true); fileInputStream.close(); fileOutputStream.close(); } catch (Exception e) { e.printStackTrace(); } } Code Sample 2: public static IProject CreateJavaProject(String name, IPath classpath) throws CoreException { // Create and Open New Project in Workspace IWorkspace workspace = ResourcesPlugin.getWorkspace(); IWorkspaceRoot root = workspace.getRoot(); IProject project = root.getProject(name); project.create(null); project.open(null); // Add Java Nature to new Project IProjectDescription desc = project.getDescription(); desc.setNatureIds(new String[] { JavaCore.NATURE_ID}); project.setDescription(desc, null); // Get Java Project Object IJavaProject javaProj = JavaCore.create(project); // Set Output Folder IFolder binDir = project.getFolder("bin"); IPath binPath = binDir.getFullPath(); javaProj.setOutputLocation(binPath, null); // Set Project's Classpath IClasspathEntry cpe = JavaCore.newLibraryEntry(classpath, null, null); javaProj.setRawClasspath(new IClasspathEntry[] {cpe}, null); return project; }
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Code Sample 1: @SuppressWarnings("unchecked") protected void processTransformAction(HttpServletRequest request, HttpServletResponse response, String action) throws Exception { File transformationFile = null; String tr = request.getParameter(Definitions.REQUEST_PARAMNAME_XSLT); if (StringUtils.isNotBlank(tr)) { transformationFile = new File(xslBase, tr); if (!transformationFile.isFile()) { response.sendError(HttpServletResponse.SC_BAD_REQUEST, "Parameter \"" + Definitions.REQUEST_PARAMNAME_XSLT + "\" " + "with value \"" + tr + "\" refers to non existing file"); return; } } StreamResult result; ByteArrayOutputStream baos = null; if (isDevelopmentMode) { baos = new ByteArrayOutputStream(); if (StringUtils.equals(action, "get")) { result = new StreamResult(new Base64.OutputStream(baos, Base64.DECODE)); } else { result = new StreamResult(baos); } } else { if (StringUtils.equals(action, "get")) { result = new StreamResult(new Base64.OutputStream(response.getOutputStream(), Base64.DECODE)); } else { result = new StreamResult(response.getOutputStream()); } } HashMap<String, Object> params = new HashMap<String, Object>(); params.putAll(request.getParameterMap()); params.put("{" + Definitions.CONFIGURATION_NAMESPACE + "}configuration", configuration); params.put("{" + Definitions.REQUEST_NAMESPACE + "}request", request); params.put("{" + Definitions.RESPONSE_NAMESPACE + "}response", response); params.put("{" + Definitions.SESSION_NAMESPACE + "}session", request.getSession()); params.put("{" + Definitions.INFOFUZE_NAMESPACE + "}development-mode", new Boolean(Config.getInstance().isDevelopmentMode())); Transformer transformer = new Transformer(); transformer.setTransformationFile(transformationFile); transformer.setParams(params); transformer.setTransformMode(TransformMode.NORMAL); transformer.setConfiguration(configuration); transformer.setErrorListener(new TransformationErrorListener(response)); transformer.setLogInfo(false); String method = transformer.getOutputProperties().getProperty(OutputKeys.METHOD, "xml"); String contentType; if (method.endsWith("html")) { contentType = Definitions.MIMETYPE_HTML; } else if (method.equals("xml")) { contentType = Definitions.MIMETYPE_XML; } else { contentType = Definitions.MIMETYPE_TEXTPLAIN; } String encoding = transformer.getOutputProperties().getProperty(OutputKeys.ENCODING, "UTF-8"); response.setContentType(contentType + ";charset=" + encoding); DataSourceIf dataSource = new NullSource(); transformer.transform((Source) dataSource, result); if (isDevelopmentMode) { IOUtils.copy(new ByteArrayInputStream(baos.toByteArray()), response.getOutputStream()); } } Code Sample 2: public void service(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException { long time = System.currentTimeMillis(); String text = request.getParameter("text"); String parsedQueryString = request.getQueryString(); if (text == null) { String[] fonts = new File(ctx.getRealPath("/WEB-INF/fonts/")).list(); text = "accepted params: text,font,size,color,background,nocache,aa,break"; response.setContentType("text/html"); PrintWriter out = response.getWriter(); out.println("<html>"); out.println("<body>"); out.println("<p>"); out.println("Usage: " + request.getServletPath() + "?params[]<BR>"); out.println("Acceptable Params are: <UL>"); out.println("<LI><B>text</B><BR>"); out.println("The body of the image"); out.println("<LI><B>font</B><BR>"); out.println("Available Fonts (in folder '/WEB-INF/fonts/') <UL>"); for (int i = 0; i < fonts.length; i++) { if (!"CVS".equals(fonts[i])) { out.println("<LI>" + fonts[i]); } } out.println("</UL>"); out.println("<LI><B>size</B><BR>"); out.println("An integer, i.e. size=100"); out.println("<LI><B>color</B><BR>"); out.println("in rgb, i.e. color=255,0,0"); out.println("<LI><B>background</B><BR>"); out.println("in rgb, i.e. background=0,0,255"); out.println("transparent, i.e. background=''"); out.println("<LI><B>aa</B><BR>"); out.println("antialias (does not seem to work), aa=true"); out.println("<LI><B>nocache</B><BR>"); out.println("if nocache is set, we will write out the image file every hit. Otherwise, will write it the first time and then read the file"); out.println("<LI><B>break</B><BR>"); out.println("An integer greater than 0 (zero), i.e. break=20"); out.println("</UL>"); out.println("</UL>"); out.println("Example:<BR>"); out.println("&lt;img border=1 src=\"" + request.getServletPath() + "?font=arial.ttf&text=testing&color=255,0,0&size=100\"&gt;<BR>"); out.println("<img border=1 src='" + request.getServletPath() + "?font=arial.ttf&text=testing&color=255,0,0&size=100'><BR>"); out.println("</body>"); out.println("</html>"); return; } String myFile = (request.getQueryString() == null) ? "empty" : PublicEncryptionFactory.digestString(parsedQueryString).replace('\\', '_').replace('/', '_'); myFile = Config.getStringProperty("PATH_TO_TITLE_IMAGES") + myFile + ".png"; File file = new File(ctx.getRealPath(myFile)); if (!file.exists() || (request.getParameter("nocache") != null)) { StringTokenizer st = null; Iterator i = hm.entrySet().iterator(); while (i.hasNext()) { Map.Entry entry = (Map.Entry) i.next(); String key = (String) entry.getKey(); if (parsedQueryString.indexOf(key) > -1) { String val = (String) entry.getValue(); parsedQueryString = UtilMethods.replace(parsedQueryString, key, val); } } st = new StringTokenizer(parsedQueryString, "&"); while (st.hasMoreTokens()) { try { String x = st.nextToken(); String key = x.split("=")[0]; String val = x.split("=")[1]; if ("text".equals(key)) { text = val; } } catch (Exception e) { } } text = URLDecoder.decode(text, "UTF-8"); Logger.debug(this.getClass(), "building title image:" + file.getAbsolutePath()); file.createNewFile(); try { String font_file = "/WEB-INF/fonts/arial.ttf"; if (request.getParameter("font") != null) { font_file = "/WEB-INF/fonts/" + request.getParameter("font"); } font_file = ctx.getRealPath(font_file); float size = 20.0f; if (request.getParameter("size") != null) { size = Float.parseFloat(request.getParameter("size")); } Color background = Color.white; if (request.getParameter("background") != null) { if (request.getParameter("background").equals("transparent")) try { background = new Color(Color.TRANSLUCENT); } catch (Exception e) { } else try { st = new StringTokenizer(request.getParameter("background"), ","); int x = Integer.parseInt(st.nextToken()); int y = Integer.parseInt(st.nextToken()); int z = Integer.parseInt(st.nextToken()); background = new Color(x, y, z); } catch (Exception e) { } } Color color = Color.black; if (request.getParameter("color") != null) { try { st = new StringTokenizer(request.getParameter("color"), ","); int x = Integer.parseInt(st.nextToken()); int y = Integer.parseInt(st.nextToken()); int z = Integer.parseInt(st.nextToken()); color = new Color(x, y, z); } catch (Exception e) { Logger.info(this, e.getMessage()); } } int intBreak = 0; if (request.getParameter("break") != null) { try { intBreak = Integer.parseInt(request.getParameter("break")); } catch (Exception e) { } } java.util.ArrayList<String> lines = null; if (intBreak > 0) { lines = new java.util.ArrayList<String>(10); lines.ensureCapacity(10); int start = 0; String line = null; int offSet; for (; ; ) { try { for (; isWhitespace(text.charAt(start)); ++start) ; if (isWhitespace(text.charAt(start + intBreak - 1))) { lines.add(text.substring(start, start + intBreak)); start += intBreak; } else { for (offSet = -1; !isWhitespace(text.charAt(start + intBreak + offSet)); ++offSet) ; lines.add(text.substring(start, start + intBreak + offSet)); start += intBreak + offSet; } } catch (Exception e) { if (text.length() > start) lines.add(leftTrim(text.substring(start))); break; } } } else { java.util.StringTokenizer tokens = new java.util.StringTokenizer(text, "|"); if (tokens.hasMoreTokens()) { lines = new java.util.ArrayList<String>(10); lines.ensureCapacity(10); for (; tokens.hasMoreTokens(); ) lines.add(leftTrim(tokens.nextToken())); } } Font font = Font.createFont(Font.TRUETYPE_FONT, new FileInputStream(font_file)); font = font.deriveFont(size); BufferedImage buffer = new BufferedImage(1, 1, BufferedImage.TYPE_INT_RGB); Graphics2D g2 = buffer.createGraphics(); if (request.getParameter("aa") != null) { g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON); } else { g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_OFF); } FontRenderContext fc = g2.getFontRenderContext(); Rectangle2D fontBounds = null; Rectangle2D textLayoutBounds = null; TextLayout tl = null; boolean useTextLayout = false; useTextLayout = Boolean.parseBoolean(request.getParameter("textLayout")); int width = 0; int height = 0; int offSet = 0; if (1 < lines.size()) { int heightMultiplier = 0; int maxWidth = 0; for (; heightMultiplier < lines.size(); ++heightMultiplier) { fontBounds = font.getStringBounds(lines.get(heightMultiplier), fc); tl = new TextLayout(lines.get(heightMultiplier), font, fc); textLayoutBounds = tl.getBounds(); if (maxWidth < Math.ceil(fontBounds.getWidth())) maxWidth = (int) Math.ceil(fontBounds.getWidth()); } width = maxWidth; int boundHeigh = (int) Math.ceil((!useTextLayout ? fontBounds.getHeight() : textLayoutBounds.getHeight())); height = boundHeigh * lines.size(); offSet = ((int) (boundHeigh * 0.2)) * (lines.size() - 1); } else { fontBounds = font.getStringBounds(text, fc); tl = new TextLayout(text, font, fc); textLayoutBounds = tl.getBounds(); width = (int) fontBounds.getWidth(); height = (int) Math.ceil((!useTextLayout ? fontBounds.getHeight() : textLayoutBounds.getHeight())); } buffer = new BufferedImage(width, height - offSet, BufferedImage.TYPE_INT_ARGB); g2 = buffer.createGraphics(); g2.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON); g2.setFont(font); g2.setColor(background); if (!background.equals(new Color(Color.TRANSLUCENT))) g2.fillRect(0, 0, width, height); g2.setColor(color); if (1 < lines.size()) { for (int numLine = 0; numLine < lines.size(); ++numLine) { int y = (int) Math.ceil((!useTextLayout ? fontBounds.getY() : textLayoutBounds.getY())); g2.drawString(lines.get(numLine), 0, -y * (numLine + 1)); } } else { int y = (int) Math.ceil((!useTextLayout ? fontBounds.getY() : textLayoutBounds.getY())); g2.drawString(text, 0, -y); } BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(file)); ImageIO.write(buffer, "png", out); out.close(); } catch (Exception ex) { Logger.info(this, ex.toString()); } } response.setContentType("image/png"); BufferedInputStream bis = new BufferedInputStream(new FileInputStream(file)); OutputStream os = response.getOutputStream(); byte[] buf = new byte[4096]; int i = 0; while ((i = bis.read(buf)) != -1) { os.write(buf, 0, i); } os.close(); bis.close(); Logger.debug(this.getClass(), "time to build title: " + (System.currentTimeMillis() - time) + "ms"); return; }
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Code Sample 1: public synchronized String encrypt(String plaintext) { if (plaintext == null || plaintext.equals("")) { return plaintext; } String hash = null; MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e.getMessage()); } try { md.update(plaintext.getBytes("UTF-8")); byte raw[] = md.digest(); hash = Base64.encodeBase64String(raw).replaceAll("\r\n", ""); } catch (UnsupportedEncodingException e) { throw new RuntimeException(e.getMessage()); } return hash; } Code Sample 2: private void getRandomGUID(boolean secure) { MessageDigest md5 = null; StringBuffer sbValueBeforeMD5 = new StringBuffer(); try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { System.out.println("Error: " + e); } try { long time = System.currentTimeMillis(); long rand = 0; if (secure) { rand = mySecureRand.nextLong(); } else { rand = myRand.nextLong(); } sbValueBeforeMD5.append(s_id); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(time)); sbValueBeforeMD5.append(":"); sbValueBeforeMD5.append(Long.toString(rand)); valueBeforeMD5 = sbValueBeforeMD5.toString(); md5.update(valueBeforeMD5.getBytes()); byte[] array = md5.digest(); StringBuffer sb = new StringBuffer(); for (int j = 0; j < array.length; ++j) { int b = array[j] & 0xFF; if (b < 0x10) sb.append('0'); sb.append(Integer.toHexString(b)); } valueAfterMD5 = sb.toString(); } catch (Exception e) { System.out.println("Error:" + e); } }
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Code Sample 1: public static String getImportFileBody(String fileName, HttpSession session) { FTPClient ftp = new FTPClient(); CofaxToolsUser user = (CofaxToolsUser) session.getAttribute("user"); String fileTransferFolder = CofaxToolsServlet.fileTransferFolder; String importFTPServer = (String) user.workingPubConfigElementsHash.get("IMPORTFTPSERVER"); String importFTPLogin = (String) user.workingPubConfigElementsHash.get("IMPORTFTPLOGIN"); String importFTPPassword = (String) user.workingPubConfigElementsHash.get("IMPORTFTPPASSWORD"); String importFTPFilePath = (String) user.workingPubConfigElementsHash.get("IMPORTFTPFILEPATH"); String body = (""); try { int reply; ftp.connect(importFTPServer); CofaxToolsUtil.log("CofaxToolsFTP getImportFileBody connecting to server " + importFTPServer); reply = ftp.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) { ftp.disconnect(); return ("CofaxToolsFTP getImportFileBody ERROR: FTP server refused connection."); } else { ftp.login(importFTPLogin, importFTPPassword); } try { boolean change = ftp.changeWorkingDirectory(importFTPFilePath); CofaxToolsUtil.log("CofaxToolsFTP getImportFileBody changing to directory: " + importFTPFilePath); CofaxToolsUtil.log("Results: " + change); OutputStream output; output = new FileOutputStream(fileTransferFolder + fileName); boolean retrieve = ftp.retrieveFile(fileName, output); CofaxToolsUtil.log("CofaxToolsFTP getImportFileBody retrieving file: " + fileName); CofaxToolsUtil.log("CofaxToolsFTP getImportFileBody results: " + change); output.close(); body = CofaxToolsUtil.readFile(fileTransferFolder + fileName, true); CofaxToolsUtil.log("CofaxToolsFTP getImportFileBody deleting remote file: " + importFTPFilePath + fileName); boolean delete = ftp.deleteFile(importFTPFilePath + fileName); CofaxToolsUtil.log("CofaxToolsFTP getImportFileBody results: " + delete); CofaxToolsUtil.log("CofaxToolsFTP getImportFileBody disconnecting from server:" + importFTPServer); ftp.logout(); ftp.disconnect(); } catch (java.io.IOException e) { return ("CofaxToolsFTP getImportFileBody ERROR: cannot write file: " + fileName); } } catch (IOException e) { return ("CofaxToolsFTP getImportFileBody ERROR: could not connect to server: " + e); } return (body); } Code Sample 2: public static String move_tags(String sessionid, String absolutePathForTheMovedTags, String absolutePathForTheDestinationTag) { String resultJsonString = "some problem existed inside the create_new_tag() function if you see this string"; try { Log.d("current running function name:", "move_tags"); HttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost("https://mt0-app.cloud.cm/rpc/json"); List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(2); nameValuePairs.add(new BasicNameValuePair("c", "Storage")); nameValuePairs.add(new BasicNameValuePair("m", "move_tag")); nameValuePairs.add(new BasicNameValuePair("absolute_new_parent_tag", absolutePathForTheDestinationTag)); nameValuePairs.add(new BasicNameValuePair("absolute_tags", absolutePathForTheMovedTags)); httppost.setEntity(new UrlEncodedFormEntity(nameValuePairs)); httppost.setHeader("Cookie", "PHPSESSID=" + sessionid); HttpResponse response = httpclient.execute(httppost); resultJsonString = EntityUtils.toString(response.getEntity()); return resultJsonString; } catch (Exception e) { e.printStackTrace(); } return resultJsonString; }
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Code Sample 1: private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } Code Sample 2: public static String getEncryptedPassword(String password) throws PasswordException { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); md.update(password.getBytes("UTF-8")); } catch (Exception e) { throw new PasswordException(e); } return convertToString(md.digest()); }
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Code Sample 1: public ActionForward saveImageMap(ActionMapping mapping, ActionForm form, HttpServletRequest request, HttpServletResponse response) throws Exception { log.debug("MapAction saveImageMap()"); String imageURL = RequestUtil.getRequest(request, "imgUrl"); DataInputStream di = null; FileOutputStream fo = null; byte[] b = new byte[1]; URL url = new URL(imageURL); URLConnection urlConnection = url.openConnection(); urlConnection.connect(); response.setContentType("application/octet-stream"); response.setHeader("Content-disposition", "attachment;filename=" + "map.png"); OutputStream outstream = response.getOutputStream(); byte abyte0[] = new byte[4096]; try { BufferedInputStream instream = new BufferedInputStream(urlConnection.getInputStream()); int i; while ((i = instream.read(abyte0, 0, 4096)) != -1) outstream.write(abyte0, 0, i); instream.close(); } catch (Exception e) { e.printStackTrace(); } return null; } Code Sample 2: @Override protected Object doInBackground() throws Exception { ArchiveInputStream bufIn = null; FileOutputStream fileOut = null; try { bufIn = DecompressionWorker.guessStream(fileToExtract); ArchiveEntry curZip = null; int progress = 0; while ((curZip = bufIn.getNextEntry()) != null) { if (!curZip.isDirectory()) { byte[] content = new byte[(int) curZip.getSize()]; fileOut = new FileOutputStream(extractionFile.getAbsolutePath() + File.separator + curZip.getName()); for (int i = 0; i < content.length; i++) { fileOut.write(content[i]); } publish(new Integer(progress)); progress++; } } } finally { if (bufIn != null) { bufIn.close(); } } return null; }
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Code Sample 1: private String endcodePassword(String password) throws UnsupportedEncodingException, NoSuchAlgorithmException { MessageDigest md = MessageDigest.getInstance("SHA"); md.update(password.getBytes("UTF-8")); byte raw[] = md.digest(); Base64 base64 = new Base64(); String hash = new String(base64.encode(raw)); return hash; } Code Sample 2: private void connect() throws Exception { if (client != null) throw new IllegalStateException("Already connected."); try { _logger.debug("About to connect to ftp server " + server + " port " + port); client = new FTPClient(); client.connect(server, port); if (!FTPReply.isPositiveCompletion(client.getReplyCode())) { throw new Exception("Unable to connect to FTP server " + server + " port " + port + " got error [" + client.getReplyString() + "]"); } _logger.info("Connected to ftp server " + server + " port " + port); _logger.debug(client.getReplyString()); _logger.debug("FTP server is [" + client.getSystemName() + "]"); if (!client.login(username, password)) { throw new Exception("Invalid username / password combination for FTP server " + server + " port " + port); } _logger.debug("Log in successful."); if (passiveMode) { client.enterLocalPassiveMode(); _logger.debug("Passive mode selected."); } else { client.enterLocalActiveMode(); _logger.debug("Active mode selected."); } if (binaryMode) { client.setFileType(FTP.BINARY_FILE_TYPE); _logger.debug("BINARY mode selected."); } else { client.setFileType(FTP.ASCII_FILE_TYPE); _logger.debug("ASCII mode selected."); } if (client.changeWorkingDirectory(remoteRootDir)) { _logger.debug("Changed directory to " + remoteRootDir); } else { if (client.makeDirectory(remoteRootDir)) { _logger.debug("Created directory " + remoteRootDir); if (client.changeWorkingDirectory(remoteRootDir)) { _logger.debug("Changed directory to " + remoteRootDir); } else { throw new Exception("Cannot change directory to [" + remoteRootDir + "] on FTP server " + server + " port " + port); } } else { throw new Exception("Cannot create directory [" + remoteRootDir + "] on FTP server " + server + " port " + port); } } } catch (Exception e) { disconnect(); throw e; } }
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Code Sample 1: public static void main(String[] args) throws Exception { File rootDir = new File("C:\\dev\\workspace_fgd\\gouvqc_crggid\\WebContent\\WEB-INF\\upload"); File storeDir = new File(rootDir, "storeDir"); File workDir = new File(rootDir, "workDir"); LoggerFacade loggerFacade = new CommonsLoggingLogger(logger); final FileResourceManager frm = new SmbFileResourceManager(storeDir.getPath(), workDir.getPath(), true, loggerFacade); frm.start(); final String resourceId = "811375c8-7cae-4429-9a0e-9222f47dab45"; { if (!frm.resourceExists(resourceId)) { String txId = frm.generatedUniqueTxId(); frm.startTransaction(txId); FileInputStream inputStream = new FileInputStream(resourceId); frm.createResource(txId, resourceId); OutputStream outputStream = frm.writeResource(txId, resourceId); IOUtils.copy(inputStream, outputStream); IOUtils.closeQuietly(inputStream); IOUtils.closeQuietly(outputStream); frm.prepareTransaction(txId); frm.commitTransaction(txId); } } for (int i = 0; i < 30; i++) { final int index = i; new Thread() { @Override public void run() { try { String txId = frm.generatedUniqueTxId(); frm.startTransaction(txId); InputStream inputStream = frm.readResource(resourceId); frm.prepareTransaction(txId); frm.commitTransaction(txId); synchronized (System.out) { System.out.println(index + " ***********************" + txId + " (début)"); } String contenu = TikaUtils.getParsedContent(inputStream, "file.pdf"); synchronized (System.out) { System.out.println(index + " ***********************" + txId + " (fin)"); } } catch (ResourceManagerSystemException e) { throw new RuntimeException(e); } catch (ResourceManagerException e) { throw new RuntimeException(e); } catch (TikaException e) { throw new RuntimeException(e); } catch (IOException e) { throw new RuntimeException(e); } } }.start(); } Thread.sleep(60000); frm.stop(FileResourceManager.SHUTDOWN_MODE_NORMAL); } Code Sample 2: private boolean createPKCReqest(String keystoreLocation, String pw) { boolean created = false; Security.addProvider(new BouncyCastleProvider()); KeyStore ks = null; try { ks = KeyStore.getInstance(KeyStore.getDefaultType()); ks.load(new BufferedInputStream(new FileInputStream(keystoreLocation)), pw.toCharArray()); } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading keystore file when creating PKC request: " + e.getMessage()); } return false; } Certificate cert = null; try { cert = ks.getCertificate("saws"); } catch (KeyStoreException e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error reading certificate from keystore file when creating PKC request: " + e.getMessage()); } return false; } PKCS10CertificationRequest request = null; PublicKey pk = cert.getPublicKey(); try { request = new PKCS10CertificationRequest("SHA1with" + pk.getAlgorithm(), new X500Principal(((X509Certificate) cert).getSubjectDN().toString()), pk, new DERSet(), (PrivateKey) ks.getKey("saws", pw.toCharArray())); PEMWriter pemWrt = new PEMWriter(new OutputStreamWriter(new FileOutputStream("sawsRequest.csr"))); pemWrt.writeObject(request); pemWrt.close(); created = true; } catch (Exception e) { if (this.debugLevel >= SAWSConstant.ErrorInfo) { this.sawsDebugLog.write("Error creating PKC request file: " + e.getMessage()); } return false; } return created; }
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Code Sample 1: private boolean writeResource(PluginProxy eclipseInstallPlugin, ResourceProxy translation, LocaleProxy locale) throws Exception { String translationResourceName = determineTranslatedResourceName(translation, locale); String pluginNameInDirFormat = eclipseInstallPlugin.getName().replace(Messages.getString("Characters_period"), File.separator); if (translation.getRelativePath().contains(pluginNameInDirFormat)) { return writeResourceToBundleClasspath(translation, locale); } else if (translationResourceName.contains(File.separator)) { String resourcePath = translationResourceName.substring(0, translationResourceName.lastIndexOf(File.separatorChar)); File resourcePathDirectory = new File(directory.getPath() + File.separatorChar + resourcePath); resourcePathDirectory.mkdirs(); } File fragmentResource = new File(directory.getPath() + File.separatorChar + translationResourceName); File translatedResource = new File(translation.getFileResource().getAbsolutePath()); FileChannel inputChannel = new FileInputStream(translatedResource).getChannel(); FileChannel outputChannel = new FileOutputStream(fragmentResource).getChannel(); inputChannel.transferTo(0, inputChannel.size(), outputChannel); inputChannel.close(); outputChannel.close(); return true; } Code Sample 2: private static String md5Encode(String pass) { String string; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(pass.getBytes()); byte[] result = md.digest(); string = bytes2hexStr(result); } catch (NoSuchAlgorithmException e) { throw new RuntimeException("La libreria java.security no implemente MD5"); } return string; }
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Code Sample 1: private CachedQuery loadQuery(String path) throws CacheException, IOException, XQueryException { final URL url; final long lastModified; final InputStream is; try { url = getServletContext().getResource(path); assert (url != null); lastModified = url.openConnection().getLastModified(); is = url.openStream(); } catch (IOException e) { log(PrintUtils.prettyPrintStackTrace(e, -1)); throw e; } _lock.readLock().lock(); CachedQuery cached = _caches.get(path); if (cached == null || cached.loadTimeStamp < lastModified) { if (cached == null) { cached = new CachedQuery(); } XQueryParser parser = new XQueryParser(is); StaticContext staticEnv = parser.getStaticContext(); try { URI baseUri = url.toURI(); staticEnv.setBaseURI(baseUri); } catch (URISyntaxException e) { log(PrintUtils.prettyPrintStackTrace(e, -1)); } final XQueryModule module; try { module = parser.parse(); } catch (XQueryException e) { log(PrintUtils.prettyPrintStackTrace(e, -1)); _lock.readLock().unlock(); throw e; } _lock.readLock().unlock(); _lock.writeLock().lock(); cached.queryObject = module; cached.staticEnv = staticEnv; cached.loadTimeStamp = System.currentTimeMillis(); _caches.put(path, cached); _lock.writeLock().unlock(); _lock.readLock().lock(); try { module.staticAnalysis(staticEnv); } catch (XQueryException e) { log(PrintUtils.prettyPrintStackTrace(e, -1)); _lock.readLock().unlock(); throw e; } } _lock.readLock().unlock(); return cached; } Code Sample 2: public static void copyFile(String f_in, String f_out, boolean remove) throws FileNotFoundException, IOException { if (remove) { PogoString readcode = new PogoString(PogoUtil.readFile(f_in)); readcode = PogoUtil.removeLogMessages(readcode); PogoUtil.writeFile(f_out, readcode.str); } else { FileInputStream fid = new FileInputStream(f_in); FileOutputStream fidout = new FileOutputStream(f_out); int nb = fid.available(); byte[] inStr = new byte[nb]; if (fid.read(inStr) > 0) fidout.write(inStr); fid.close(); fidout.close(); } }
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Code Sample 1: private byte[] hash(String data, HashAlg alg) { try { MessageDigest digest = MessageDigest.getInstance(alg.toString()); digest.update(data.getBytes()); byte[] hash = digest.digest(); return hash; } catch (NoSuchAlgorithmException e) { } return null; } Code Sample 2: public boolean authenticate(String user, String pass) throws IOException { MessageDigest hash = null; try { MessageDigest.getInstance("BrokenMD4"); } catch (NoSuchAlgorithmException x) { throw new Error(x); } hash.update(new byte[4], 0, 4); try { hash.update(pass.getBytes("US-ASCII"), 0, pass.length()); hash.update(challenge.getBytes("US-ASCII"), 0, challenge.length()); } catch (java.io.UnsupportedEncodingException shouldNeverHappen) { } String response = Util.base64(hash.digest()); Util.writeASCII(out, user + " " + response + '\n'); String reply = Util.readLine(in); if (reply.startsWith(RSYNCD_OK)) { authReqd = false; return true; } connected = false; error = reply; return false; }
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Code Sample 1: public static String CreateHash(String s) { String str = s.toString(); if (str == null || str.length() == 0) { throw new IllegalArgumentException("String cannot be null or empty"); } StringBuffer hexString = new StringBuffer(); try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); byte[] hash = md.digest(); for (int i = 0; i < hash.length; i++) { if ((0xff & hash[i]) < 0x10) { hexString.append("0" + Integer.toHexString((0xFF & hash[i]))); } else { hexString.append(Integer.toHexString(0xFF & hash[i])); } } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return (hexString.toString()); } Code Sample 2: public static void main(String[] a) throws Exception { HashMap<String, Integer> numberOfOccurencesOfThisComboe = new HashMap<String, Integer>(); HashMap<String, String> fileToCATHMapping = new HashMap<String, String>(); ArrayList<String> allFilesToBeCopied = new ArrayList<String>(); new File(outputDir).mkdirs(); FileReader fis = new FileReader(completeFileWithDirToCathFileList); BufferedReader bis = new BufferedReader(fis); String line = ""; String currentCombo = ""; while ((line = bis.readLine()) != null) { String[] allEntries = line.split("\\s+"); String fileName = allEntries[0]; String thisCombo = allEntries[1] + allEntries[2] + allEntries[3] + allEntries[4]; String reducedComboForFilteringOut = allEntries[1] + allEntries[2] + allEntries[3]; fileToCATHMapping.put(fileName, reducedComboForFilteringOut); if (currentCombo.equals(thisCombo)) { } else { System.out.println("merke: " + fileName); allFilesToBeCopied.add(fileName); currentCombo = thisCombo; } } for (String fileName : allFilesToBeCopied) { String reducedComboForFilteringOut = fileToCATHMapping.get(fileName); if (!numberOfOccurencesOfThisComboe.containsKey(reducedComboForFilteringOut)) { numberOfOccurencesOfThisComboe.put(reducedComboForFilteringOut, 1); } else { Integer thisCounter = numberOfOccurencesOfThisComboe.get(reducedComboForFilteringOut); thisCounter = thisCounter + 1; numberOfOccurencesOfThisComboe.put(reducedComboForFilteringOut, thisCounter); } } HashSet<String> isSingleElement = new HashSet<String>(); for (Entry<String, Integer> thisEntry : numberOfOccurencesOfThisComboe.entrySet()) { if (thisEntry.getValue() == 1) { System.out.println("single: " + thisEntry.getKey()); isSingleElement.add(thisEntry.getKey()); } else { System.out.println("not single: " + thisEntry.getKey()); } } System.out.println(allFilesToBeCopied.size()); for (String file : allFilesToBeCopied) { if (!isSingleElement.contains(fileToCATHMapping.get(file))) { try { FileChannel srcChannel = new FileInputStream(CathDir + file).getChannel(); FileChannel dstChannel = new FileOutputStream(outputDir + file).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); } catch (IOException e) { e.printStackTrace(); } } } }
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Code Sample 1: public static void zip(String destination, String folder) { File fdir = new File(folder); File[] files = fdir.listFiles(); PrintWriter stdout = new PrintWriter(System.out, true); int read = 0; FileInputStream in; byte[] data = new byte[1024]; try { ZipOutputStream out = new ZipOutputStream(new FileOutputStream(destination)); out.setMethod(ZipOutputStream.DEFLATED); for (int i = 0; i < files.length; i++) { try { stdout.println(files[i].getName()); ZipEntry entry = new ZipEntry(files[i].getName()); in = new FileInputStream(files[i].getPath()); out.putNextEntry(entry); while ((read = in.read(data, 0, 1024)) != -1) { out.write(data, 0, read); } out.closeEntry(); in.close(); } catch (Exception e) { e.printStackTrace(); } } out.close(); } catch (IOException ex) { ex.printStackTrace(); } } Code Sample 2: private static void prepare() { System.err.println("PREPARING-----------------------------------------"); deleteHome(); InputStream configStream = null; FileOutputStream tempStream = null; try { configStream = AllTests.class.getClassLoader().getResourceAsStream("net/sf/archimede/test/resources/repository.xml"); new File("temp").mkdir(); tempStream = new FileOutputStream(new File("temp/repository.xml")); IOUtils.copy(configStream, tempStream); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } finally { try { if (configStream != null) { configStream.close(); } } catch (IOException e) { e.printStackTrace(); } finally { if (tempStream != null) { try { tempStream.close(); } catch (IOException e) { e.printStackTrace(); } } } } String repositoryName = "jackrabbit.repository"; Properties jndiProperties = new Properties(); jndiProperties.put("java.naming.provider.url", "http://sf.net/projects/archimede#1"); jndiProperties.put("java.naming.factory.initial", "org.apache.jackrabbit.core.jndi.provider.DummyInitialContextFactory"); startupUtil = new StartupJcrUtil(REPOSITORY_HOME, "temp/repository.xml", repositoryName, jndiProperties); startupUtil.init(); }
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Code Sample 1: private void zip(FileHolder fileHolder, int zipCompressionLevel) { byte[] buffer = new byte[BUFFER_SIZE]; int bytes_read; if (fileHolder.selectedFileList.size() == 0) { return; } File zipDestFile = new File(fileHolder.destFiles[0]); try { ZipOutputStream outStream = new ZipOutputStream(new FileOutputStream(zipDestFile)); for (int i = 0; i < fileHolder.selectedFileList.size(); i++) { File selectedFile = fileHolder.selectedFileList.get(i); super.currentObjBeingProcessed = selectedFile; this.inStream = new FileInputStream(selectedFile); ZipEntry entry = new ZipEntry(selectedFile.getName()); outStream.setLevel(zipCompressionLevel); outStream.putNextEntry(entry); while ((bytes_read = this.inStream.read(buffer)) != -1) { outStream.write(buffer, 0, bytes_read); } outStream.closeEntry(); this.inStream.close(); } outStream.close(); } catch (IOException e) { errEntry.setThrowable(e); errEntry.setAppContext("gzip()"); errEntry.setAppMessage("Error zipping: " + zipDestFile); logger.logError(errEntry); } return; } Code Sample 2: protected void initializeFromURL(URL url) throws IOException { URLConnection connection = url.openConnection(); String message = this.validateURLConnection(connection, DBASE_CONTENT_TYPES); if (message != null) { throw new IOException(message); } this.channel = Channels.newChannel(WWIO.getBufferedInputStream(connection.getInputStream())); this.initialize(); }
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Code Sample 1: public static void copyFiles(String strPath, String dstPath) throws IOException { File src = new File(strPath); File dest = new File(dstPath); if (src.isDirectory()) { dest.mkdirs(); String list[] = src.list(); for (int i = 0; i < list.length; i++) { String dest1 = dest.getAbsolutePath() + File.separatorChar + list[i]; String src1 = src.getAbsolutePath() + File.separatorChar + list[i]; copyFiles(src1, dest1); } } else { FileInputStream fin = new FileInputStream(src); FileOutputStream fout = new FileOutputStream(dest); int c; while ((c = fin.read()) >= 0) fout.write(c); fin.close(); fout.close(); } } Code Sample 2: public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; }
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Code Sample 1: private static void init() { try { ClassLoader cl = Thread.currentThread().getContextClassLoader(); Enumeration<URL> enumeration = cl.getResources("extension-services.properties"); do { if (!enumeration.hasMoreElements()) break; URL url = (URL) enumeration.nextElement(); System.out.println(" - " + url); try { props = new Properties(); props.load(url.openStream()); } catch (Exception e) { e.printStackTrace(); } } while (true); } catch (IOException e) { } } Code Sample 2: public static String encrypt(String algorithm, String[] input) { try { MessageDigest md = MessageDigest.getInstance(algorithm); md.reset(); for (int i = 0; i < input.length; i++) { if (input[i] != null) md.update(input[i].getBytes("UTF-8")); } byte[] messageDigest = md.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < messageDigest.length; i++) { hexString.append(Integer.toHexString((0xf0 & messageDigest[i]) >> 4)); hexString.append(Integer.toHexString(0x0f & messageDigest[i])); } return hexString.toString(); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } catch (UnsupportedEncodingException e) { throw new RuntimeException(e); } catch (NullPointerException e) { return new StringBuffer().toString(); } }
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Code Sample 1: public void copyFileFromLocalMachineToRemoteMachine(InputStream source, File destination) throws Exception { String fileName = destination.getPath(); File f = new File(getFtpServerHome(), "" + System.currentTimeMillis()); f.deleteOnExit(); org.apache.commons.io.IOUtils.copy(source, new FileOutputStream(f)); remoteHostClient.setAscii(isAscii()); remoteHostClient.setPromptOn(isPrompt()); remoteHostClient.copyFileFromLocalMachineToRemoteClient(f.getName(), fileName); } Code Sample 2: public void includeCss(Group group, Writer out, PageContext pageContext) throws IOException { ByteArrayOutputStream outtmp = new ByteArrayOutputStream(); if (AbstractGroupBuilder.getInstance().buildGroupJsIfNeeded(group, outtmp, pageContext.getServletContext())) { FileOutputStream fileStream = null; try { fileStream = new FileOutputStream(new File(RetentionHelper.buildFullRetentionFilePath(group, ".css"))); IOUtils.copy(new ByteArrayInputStream(outtmp.toByteArray()), fileStream); } finally { if (fileStream != null) fileStream.close(); } } }
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Code Sample 1: public boolean check(int timeout) { StringBuilder result = null; java.net.URL url; java.io.InputStream in = null; try { url = new java.net.URL(location + "/prisms?method=test"); java.net.URLConnection conn = url.openConnection(); conn.setConnectTimeout(timeout); in = conn.getInputStream(); java.io.Reader reader = new java.io.InputStreamReader(in); result = new StringBuilder(); int read = reader.read(); while (read >= 0) { result.append((char) read); read = reader.read(); } } catch (java.io.IOException e) { log.error("Instance check failed", e); if (in != null) try { in.close(); } catch (java.io.IOException e2) { } } return result != null && result.toString().startsWith("success"); } Code Sample 2: private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } }
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Code Sample 1: private void fetchAvailable(ProgressObserver po) { if (po == null) throw new IllegalArgumentException("the progress observer can't be null"); if (availables == null) availables = new ArrayList<Dictionary>(); else availables.clear(); if (installed == null) initInstalled(); File home = SpellCheckPlugin.getHomeDir(jEdit.getActiveView()); File target = new File(home, "available.lst"); try { boolean skipDownload = false; if (target.exists()) { long modifiedDate = target.lastModified(); Calendar c = Calendar.getInstance(); c.setTimeInMillis(modifiedDate); Calendar yesterday = Calendar.getInstance(); yesterday.add(Calendar.HOUR, -1); skipDownload = yesterday.before(c); } String enc = null; if (!skipDownload) { URL available_url = new URL(jEdit.getProperty(OOO_DICTS_PROP) + "available.lst"); URLConnection connect = available_url.openConnection(); connect.connect(); InputStream is = connect.getInputStream(); po.setMaximum(connect.getContentLength()); OutputStream os = new FileOutputStream(target); boolean copied = IOUtilities.copyStream(po, is, os, true); if (!copied) { Log.log(Log.ERROR, HunspellDictsManager.class, "Unable to download " + available_url.toString()); GUIUtilities.error(null, "spell-check-hunspell-error-fetch", new String[] { "Unable to download file " + available_url.toString() }); availables = null; if (target.exists()) target.delete(); return; } IOUtilities.closeQuietly(os); enc = connect.getContentEncoding(); } FileInputStream fis = new FileInputStream(target); Reader r; if (enc != null) { try { r = new InputStreamReader(fis, enc); } catch (UnsupportedEncodingException uee) { r = new InputStreamReader(fis, "UTF-8"); } } else { r = new InputStreamReader(fis, "UTF-8"); } BufferedReader br = new BufferedReader(r); for (String line = br.readLine(); line != null; line = br.readLine()) { Dictionary d = parseLine(line); if (d != null) { int ind = installed.indexOf(d); if (ind == -1) { d.installed = false; availables.add(d); } else { Dictionary id = installed.get(ind); if (!skipDownload) { Date lmd = fetchLastModifiedDate(id.archiveName); if (lmd != null) { id.lastModified = lmd; } } } } } IOUtilities.closeQuietly(fis); } catch (IOException ioe) { if (ioe instanceof UnknownHostException) { GUIUtilities.error(null, "spell-check-hunspell-error-unknownhost", new String[] { ioe.getMessage() }); } else { GUIUtilities.error(null, "spell-check-hunspell-error-fetch", new String[] { ioe.getMessage() }); } ioe.printStackTrace(); if (target.exists()) target.delete(); } } Code Sample 2: public static String SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return convertToHex(sha1hash); }
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Code Sample 1: public void run() { try { if (netLoadAccount.loginsuccessful) { host = netLoadAccount.username + " | Netload.in"; } else { host = "Netload.in"; } status = UploadStatus.INITIALISING; initialize(); HttpClient httpclient = new DefaultHttpClient(); HttpPost httppost = new HttpPost(postURL); if (netLoadAccount.loginsuccessful) { httppost.setHeader("Cookie", usercookie); } MultipartEntity mpEntity = new MultipartEntity(HttpMultipartMode.BROWSER_COMPATIBLE); if (netLoadAccount.loginsuccessful) { mpEntity.addPart("upload_hash", new StringBody(upload_hash)); } mpEntity.addPart("file", new MonitoredFileBody(file, uploadProgress)); httppost.setEntity(mpEntity); NULogger.getLogger().log(Level.INFO, "executing request {0}", httppost.getRequestLine()); NULogger.getLogger().info("Now uploading your file into netload"); status = UploadStatus.UPLOADING; HttpResponse response = httpclient.execute(httppost); status = UploadStatus.GETTINGLINK; HttpEntity resEntity = response.getEntity(); NULogger.getLogger().info(response.getStatusLine().toString()); httpclient.getConnectionManager().shutdown(); if (response.containsHeader("Location")) { Header firstHeader = response.getFirstHeader("Location"); NULogger.getLogger().info(firstHeader.getValue()); uploadresponse = getData(firstHeader.getValue()); downloadlink = CommonUploaderTasks.parseResponse(uploadresponse, "The download link is: <br/>", "\" target=\"_blank\">"); downloadlink = downloadlink.substring(downloadlink.indexOf("href=\"")); downloadlink = downloadlink.replace("href=\"", ""); NULogger.getLogger().log(Level.INFO, "download link : {0}", downloadlink); deletelink = CommonUploaderTasks.parseResponse(uploadresponse, "The deletion link is: <br/>", "\" target=\"_blank\">"); deletelink = deletelink.substring(deletelink.indexOf("href=\"")); deletelink = deletelink.replace("href=\"", ""); NULogger.getLogger().log(Level.INFO, "delete link : {0}", deletelink); downURL = downloadlink; delURL = deletelink; uploadFinished(); } else { throw new Exception("There might be a problem with your internet connection or server error. Please try after some time :("); } } catch (Exception e) { Logger.getLogger(getClass().getName()).log(Level.SEVERE, null, e); uploadFailed(); } } Code Sample 2: public static long copy(File src, File dest) throws UtilException { FileChannel srcFc = null; FileChannel destFc = null; try { srcFc = new FileInputStream(src).getChannel(); destFc = new FileOutputStream(dest).getChannel(); long srcLength = srcFc.size(); srcFc.transferTo(0, srcLength, destFc); return srcLength; } catch (IOException e) { throw new UtilException(e); } finally { try { if (srcFc != null) srcFc.close(); srcFc = null; } catch (IOException e) { } try { if (destFc != null) destFc.close(); destFc = null; } catch (IOException e) { } } }
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Code Sample 1: public void initialize(AtomPropsMenu menu) { propertiesMenu = menu; if (shieldings == null) { try { URL url = this.getClass().getClassLoader().getResource(RF); InputStreamReader isr = new InputStreamReader(url.openStream()); BufferedReader br = new BufferedReader(isr); SharcReader sr1 = new SharcReader(br); shieldings = new Hashtable(); while (sr1.hasNext()) { SharcShielding ss1 = sr1.next(); shieldings.put(ss1.getMethod(), ss1); } String[] shieldingNames = new String[shieldings.size()]; int i = 0; Enumeration k = shieldings.keys(); while (k.hasMoreElements()) { shieldingNames[i] = (String) k.nextElement(); i++; } dialog = new SelectSharcReference(null, shieldingNames, true); } catch (Exception ex) { shieldings = null; } } } Code Sample 2: public WordEntry[] getVariants(String word) throws MatchPackException { String upperWord = word.toUpperCase(); if (variantsDictionary == null) { try { long start = System.currentTimeMillis(); URL url = this.getClass().getResource("varlex.dic"); ObjectInputStream si = new ObjectInputStream(url.openStream()); variantsDictionary = (Map) si.readObject(); long end = System.currentTimeMillis(); System.out.println("loaded " + (end - start) + "ms"); si.close(); } catch (Exception e) { throw new MatchPackException("cannot load: varlex.dic " + e.getMessage()); } } List l = (List) variantsDictionary.get(upperWord); if (l == null) { return new WordEntry[0]; } return (WordEntry[]) l.toArray(new WordEntry[0]); }
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Code Sample 1: private Document getXMLDoc(Region region) { Document doc; try { InputStream stream; URL url = new URL("http://eve-central.com/api/marketstat?hours=" + HOURS + "&" + getTypes() + "&regionlimit=" + region.getTypeID()); System.out.println(url.toString()); stream = url.openStream(); DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder parser = factory.newDocumentBuilder(); doc = parser.parse(stream); } catch (MalformedURLException e) { e.printStackTrace(); doc = new DefaultDocument(); } catch (SAXException e) { e.printStackTrace(); doc = new DefaultDocument(); } catch (IOException e) { e.printStackTrace(); doc = new DefaultDocument(); } catch (ParserConfigurationException e) { e.printStackTrace(); doc = new DefaultDocument(); } return doc; } Code Sample 2: public static long removePropertyInOpenXMLDocument(String ext, InputStream in, OutputStreamProvider outProvider, String propriete) { in = new BufferedInputStream(in); try { File tempPptx = null; POIXMLDocument doc; if (ext.toLowerCase().equals("docx")) { doc = new XWPFDocument(in); } else if (ext.toLowerCase().equals("xlsx")) { doc = new XSSFWorkbook(in); } else if (ext.toLowerCase().equals("pptx")) { tempPptx = File.createTempFile("temp", "pptx"); OutputStream tempPptxOut = new FileOutputStream(tempPptx); tempPptxOut = new BufferedOutputStream(tempPptxOut); IOUtils.copy(in, tempPptxOut); tempPptxOut.close(); doc = new XSLFSlideShow(tempPptx.getAbsolutePath()); } else { throw new IllegalArgumentException("Writing properties for a " + ext + " file is not supported"); } CoreProperties coreProperties = doc.getProperties().getCoreProperties(); if (propriete.equals(Metadata.TITLE)) { coreProperties.setTitle(""); } else if (propriete.equals(Metadata.AUTHOR)) { coreProperties.setCreator(""); } else if (propriete.equals(Metadata.KEYWORDS)) { coreProperties.getUnderlyingProperties().setKeywordsProperty(""); } else if (propriete.equals(Metadata.COMMENTS)) { coreProperties.setDescription(""); } else if (propriete.equals(Metadata.SUBJECT)) { coreProperties.setSubjectProperty(""); } else if (propriete.equals(Metadata.COMPANY)) { doc.getProperties().getExtendedProperties().getUnderlyingProperties().setCompany(""); } else { org.apache.poi.POIXMLProperties.CustomProperties customProperties = doc.getProperties().getCustomProperties(); if (customProperties.contains(propriete)) { int index = 0; for (CTProperty prop : customProperties.getUnderlyingProperties().getPropertyArray()) { if (prop.getName().equals(propriete)) { customProperties.getUnderlyingProperties().removeProperty(index); break; } index++; } } } in.close(); File tempOpenXMLDocumentFile = File.createTempFile("temp", "tmp"); OutputStream tempOpenXMLDocumentOut = new FileOutputStream(tempOpenXMLDocumentFile); tempOpenXMLDocumentOut = new BufferedOutputStream(tempOpenXMLDocumentOut); doc.write(tempOpenXMLDocumentOut); tempOpenXMLDocumentOut.close(); long length = tempOpenXMLDocumentFile.length(); InputStream tempOpenXMLDocumentIn = new FileInputStream(tempOpenXMLDocumentFile); tempOpenXMLDocumentIn = new BufferedInputStream(tempOpenXMLDocumentIn); OutputStream out = null; try { out = outProvider.getOutputStream(); out = new BufferedOutputStream(out); IOUtils.copy(tempOpenXMLDocumentIn, out); out.flush(); } finally { IOUtils.closeQuietly(out); } if (!FileUtils.deleteQuietly(tempOpenXMLDocumentFile)) { tempOpenXMLDocumentFile.deleteOnExit(); } if (tempPptx != null && !FileUtils.deleteQuietly(tempPptx)) { tempPptx.deleteOnExit(); } return length; } catch (IOException e) { throw new RuntimeException(e); } catch (InvalidFormatException e) { throw new RuntimeException(e); } catch (OpenXML4JException e) { throw new RuntimeException(e); } catch (XmlException e) { throw new RuntimeException(e); } }
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Code Sample 1: public static void proxyRequest(IPageContext context, Writer writer, String proxyPath) throws IOException { URLConnection connection = new URL(proxyPath).openConnection(); connection.setDoInput(true); connection.setDoOutput(false); connection.setUseCaches(false); connection.setRequestProperty("Content-Type", "text/html; charset=UTF-8"); connection.setReadTimeout(30000); connection.setConnectTimeout(5000); Enumeration<String> e = context.httpRequest().getHeaderNames(); while (e.hasMoreElements()) { String name = e.nextElement(); if (name.equalsIgnoreCase("HOST") || name.equalsIgnoreCase("Accept-Encoding") || name.equalsIgnoreCase("Authorization")) continue; Enumeration<String> headers = context.httpRequest().getHeaders(name); while (headers.hasMoreElements()) { String header = headers.nextElement(); connection.setRequestProperty(name, header); } } if (connection instanceof HttpURLConnection) { HttpURLConnection httpConnection = (HttpURLConnection) connection; httpConnection.setRequestMethod(context.httpRequest().getMethod()); if ("POST".equalsIgnoreCase(context.httpRequest().getMethod()) || "PUT".equalsIgnoreCase(context.httpRequest().getMethod())) { Enumeration<String> names = context.httpRequest().getParameterNames(); StringBuilder body = new StringBuilder(); while (names.hasMoreElements()) { String key = names.nextElement(); for (String value : context.parameters(key)) { if (body.length() > 0) { body.append('&'); } try { body.append(key).append("=").append(URLEncoder.encode(value, "UTF-8")); } catch (UnsupportedEncodingException ex) { } } } if (body.length() > 0) { connection.setDoOutput(true); OutputStreamWriter out = new OutputStreamWriter(connection.getOutputStream()); out.write(body.toString()); out.close(); } } } try { IOUtils.copy(connection.getInputStream(), writer); } catch (IOException ex) { writer.write("<span>SSI Error: " + ex.getMessage() + "</span>"); } } Code Sample 2: public void save(File selectedFile) throws IOException { if (storeEntriesInFiles) { boolean moved = false; for (int i = 0; i < tempFiles.size(); i++) { File newFile = new File(selectedFile.getAbsolutePath() + "_" + Integer.toString(i) + ".zettmp"); moved = tempFiles.get(i).renameTo(newFile); if (!moved) { BufferedReader read = new BufferedReader(new FileReader(tempFiles.get(i))); PrintWriter write = new PrintWriter(newFile); String s; while ((s = read.readLine()) != null) write.print(s); read.close(); write.flush(); write.close(); tempFiles.get(i).delete(); } tempFiles.set(i, newFile); } } GZIPOutputStream output = new GZIPOutputStream(new BufferedOutputStream(new FileOutputStream(selectedFile))); XStream xml_convert = new XStream(); xml_convert.setMode(XStream.ID_REFERENCES); xml_convert.toXML(this, output); output.flush(); output.close(); }
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Code Sample 1: protected void shutdown(final boolean unexpected) { ControlerState oldState = this.state; this.state = ControlerState.Shutdown; if (oldState == ControlerState.Running) { if (unexpected) { log.warn("S H U T D O W N --- received unexpected shutdown request."); } else { log.info("S H U T D O W N --- start regular shutdown."); } if (this.uncaughtException != null) { log.warn("Shutdown probably caused by the following Exception.", this.uncaughtException); } this.controlerListenerManager.fireControlerShutdownEvent(unexpected); if (this.dumpDataAtEnd) { Knowledges kk; if (this.config.scenario().isUseKnowledges()) { kk = (this.getScenario()).getKnowledges(); } else { kk = this.getScenario().retrieveNotEnabledKnowledges(); } new PopulationWriter(this.population, this.network, kk).write(this.controlerIO.getOutputFilename(FILENAME_POPULATION)); new NetworkWriter(this.network).write(this.controlerIO.getOutputFilename(FILENAME_NETWORK)); new ConfigWriter(this.config).write(this.controlerIO.getOutputFilename(FILENAME_CONFIG)); ActivityFacilities facilities = this.getFacilities(); if (facilities != null) { new FacilitiesWriter((ActivityFacilitiesImpl) facilities).write(this.controlerIO.getOutputFilename("output_facilities.xml.gz")); } if (((NetworkFactoryImpl) this.network.getFactory()).isTimeVariant()) { new NetworkChangeEventsWriter().write(this.controlerIO.getOutputFilename("output_change_events.xml.gz"), ((NetworkImpl) this.network).getNetworkChangeEvents()); } if (this.config.scenario().isUseHouseholds()) { new HouseholdsWriterV10(this.scenarioData.getHouseholds()).writeFile(this.controlerIO.getOutputFilename(FILENAME_HOUSEHOLDS)); } if (this.config.scenario().isUseLanes()) { new LaneDefinitionsWriter20(this.scenarioData.getScenarioElement(LaneDefinitions20.class)).write(this.controlerIO.getOutputFilename(FILENAME_LANES)); } if (!unexpected && this.getConfig().vspExperimental().isWritingOutputEvents()) { File toFile = new File(this.controlerIO.getOutputFilename("output_events.xml.gz")); File fromFile = new File(this.controlerIO.getIterationFilename(this.getLastIteration(), "events.xml.gz")); IOUtils.copyFile(fromFile, toFile); } } if (unexpected) { log.info("S H U T D O W N --- unexpected shutdown request completed."); } else { log.info("S H U T D O W N --- regular shutdown completed."); } try { Runtime.getRuntime().removeShutdownHook(this.shutdownHook); } catch (IllegalStateException e) { log.info("Cannot remove shutdown hook. " + e.getMessage()); } this.shutdownHook = null; this.collectLogMessagesAppender = null; IOUtils.closeOutputDirLogging(); } } Code Sample 2: private synchronized Frame addFrame(INSERT_TYPE type, File source) throws IOException { if (source == null) throw new NullPointerException("Parameter 'source' is null"); if (!source.exists()) throw new IOException("File does not exist: " + source.getAbsolutePath()); if (source.length() <= 0) throw new IOException("File is empty: " + source.getAbsolutePath()); File newLocation = new File(Settings.getPropertyString(ConstantKeys.project_dir), formatFileName(frames_.size())); if (newLocation.compareTo(source) != 0) { switch(type) { case MOVE: source.renameTo(newLocation); break; case COPY: FileChannel inChannel = new FileInputStream(source).getChannel(); FileChannel outChannel = new FileOutputStream(newLocation).getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); break; } } Frame f = new Frame(newLocation); f.createThumbNail(); frames_.add(f); return f; }
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Code Sample 1: public static boolean copyFile(File soureFile, File destFile) { boolean copySuccess = false; if (soureFile != null && destFile != null && soureFile.exists()) { try { new File(destFile.getParent()).mkdirs(); BufferedOutputStream out = new BufferedOutputStream(new FileOutputStream(destFile)); BufferedInputStream in = new BufferedInputStream(new FileInputStream(soureFile)); for (int currentByte = in.read(); currentByte != -1; currentByte = in.read()) out.write(currentByte); in.close(); out.close(); copySuccess = true; } catch (Exception e) { copySuccess = false; } } return copySuccess; } Code Sample 2: public static void copy(File fromFile, File toFile) throws IOException { if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFile.getCanonicalPath()); if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFile.getCanonicalPath()); if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFile.getCanonicalPath()); if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName()); if (toFile.exists()) { if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFile.getCanonicalPath()); throw new IOException("FileCopy: " + "existing file was not overwritten."); } else { String parent = toFile.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent); if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent); if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(fromFile); to = new FileOutputStream(toFile); byte[] buffer = new byte[1024 * 1024]; int bytesRead; while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead); if (fromFile.isHidden()) { } toFile.setLastModified(fromFile.lastModified()); toFile.setExecutable(fromFile.canExecute()); toFile.setReadable(fromFile.canRead()); toFile.setWritable(toFile.canWrite()); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } }
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Code Sample 1: public In(String s) { try { File file = new File(s); if (file.exists()) { scanner = new Scanner(file, charsetName); scanner.useLocale(usLocale); return; } URL url = getClass().getResource(s); if (url == null) { url = new URL(s); } URLConnection site = url.openConnection(); InputStream is = site.getInputStream(); scanner = new Scanner(is, charsetName); scanner.useLocale(usLocale); } catch (IOException ioe) { System.err.println("Could not open " + s); } } Code Sample 2: private void writeData(IBaseType dataType, Writer writer) throws XMLStreamException { InputStream isData; DataType data = (DataType) baseType; if (data.isSetInputStream()) { isData = data.getInputStream(); try { IOUtils.copy(isData, writer); } catch (IOException e) { throw new XMLStreamException("DataType fail writing streaming data ", e); } } else if (data.isSetOutputStream()) { throw new XMLStreamException("DataType only can write streaming input, its an output stream (only for reading) "); } else { new CharactersEventImpl(startElement.getLocation(), String.valueOf(baseType.asData()), false).writeAsEncodedUnicode(writer); } }
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Code Sample 1: public static void _he3Decode(String in_file) { try { File out = new File(in_file + dec_extension); File in = new File(in_file); int file_size = (int) in.length(); FileInputStream in_stream = new FileInputStream(in_file); out.createNewFile(); FileOutputStream out_stream = new FileOutputStream(out.getName()); InputStreamReader inputReader = new InputStreamReader(in_stream, "ISO8859_1"); OutputStreamWriter outputWriter = new OutputStreamWriter(out_stream, "ISO8859_1"); ByteArrayOutputStream os = new ByteArrayOutputStream(file_size); byte byte_arr[] = new byte[8]; char char_arr[] = new char[8]; int buff_size = char_arr.length; int _fetched = 0; int _chars_read = 0; System.out.println(appname + ".\n" + dec_mode + ": " + in_file + "\n" + dec_mode + " to: " + in_file + dec_extension + "\n" + "\nreading: "); while (_fetched < file_size) { _chars_read = inputReader.read(char_arr, 0, buff_size); if (_chars_read == -1) break; for (int i = 0; i < _chars_read; i++) byte_arr[i] = (byte) char_arr[i]; os.write(byte_arr, 0, _chars_read); _fetched += _chars_read; System.out.print("*"); } System.out.print("\n" + dec_mode + ": "); outputWriter.write(new String(_decode((ByteArrayOutputStream) os), "ISO-8859-1")); System.out.print("complete\n\n"); } catch (java.io.FileNotFoundException fnfEx) { System.err.println("Exception: " + fnfEx.getMessage()); } catch (java.io.IOException ioEx) { System.err.println("Exception: " + ioEx.getMessage()); } } Code Sample 2: public void xtestURL1() throws Exception { URL url = new URL(IOTest.URL); InputStream inputStream = url.openStream(); OutputStream outputStream = new FileOutputStream("C:/Temp/testURL1.mp4"); IOUtils.copy(inputStream, outputStream); inputStream.close(); outputStream.close(); }
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Code Sample 1: private void load(Runestone stone) throws RunesExceptionRuneExecution, RunesExceptionNoSuchContent { final Tokeniser tokeniser = stone.<Tokeniser>getContent("tokeniser").iterator().next(); rules = new HashMap<Node, List<GazRule>>(); System.out.println("Loading Gaz from: " + _url); if (_url == null) return; BufferedReader typesIn = null, entryIn = null; try { typesIn = new BufferedReader(new InputStreamReader(_url.openStream())); String tData = typesIn.readLine(); while (tData != null) { Map<String, Map> gaz = new HashMap<String, Map>(); String[] data = tData.split(":"); URL listURL = new URL(_url, data[0]); System.err.println("Loading from " + listURL); entryIn = new BufferedReader(new InputStreamReader(listURL.openStream())); String entry = entryIn.readLine(); while (entry != null) { entry = entry.trim(); if (!entry.equals("")) { final List<Token> tokens; try { tokens = tokeniser.tokenise(entry); } catch (IOException e) { throw new RunesExceptionRuneExecution(e, this); } Map<String, Map> m = gaz; for (Token t : tokens) { String token = t.getString(); if (_case_insensitive_gazetteer) token = token.toLowerCase(); @SuppressWarnings("unchecked") Map<String, Map> next = m.get(token); if (next == null) next = new HashMap<String, Map>(); m.put(token, next); m = next; } m.put(STOP, null); } entry = entryIn.readLine(); } for (Map.Entry<String, Map> er : gaz.entrySet()) { NodeAbstract start = new NodeStringImpl(TOKEN_TYPE, null); if (_case_insensitive_gazetteer) { start.addFeature(TOKEN_HAS_STRING, new NodeRegExpImpl(TOKEN_STRING, "(?i:" + er.getKey().toLowerCase() + ")")); } else { start.addFeature(TOKEN_HAS_STRING, new NodeStringImpl(TOKEN_STRING, er.getKey())); } @SuppressWarnings("unchecked") Transition transition = mapToTransition(er.getValue()); String major = data[1]; String minor = (data.length == 3 ? data[2] : null); GazRule gr = new GazRule(major, minor, transition); List<GazRule> rl = rules.get(start); if (rl == null) rl = new ArrayList<GazRule>(); rl.add(gr); rules.put(start, rl); } entryIn.close(); System.err.println(rules.size()); tData = typesIn.readLine(); } } catch (IOException e) { throw new RunesExceptionRuneExecution(e, this); } finally { try { if (typesIn != null) typesIn.close(); } catch (IOException e) { } try { if (entryIn != null) entryIn.close(); } catch (IOException e) { } } } Code Sample 2: public static String unsecureHashConstantSalt(String password) throws NoSuchAlgorithmException, UnsupportedEncodingException { password = SALT3 + password; MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(password.getBytes(), 0, password.length()); password += convertToHex(md5.digest()) + SALT4; MessageDigest md = MessageDigest.getInstance("SHA-512"); byte[] sha1hash = new byte[40]; md.update(password.getBytes("UTF-8"), 0, password.length()); sha1hash = md.digest(); return convertToHex(sha1hash); }
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Code Sample 1: private void copyPhoto(final IPhoto photo, final Map.Entry<String, Integer> size) { final File fileIn = new File(storageService.getPhotoPath(photo, storageService.getOriginalDir())); final File fileOut = new File(storageService.getPhotoPath(photo, size.getKey())); InputStream fileInputStream; OutputStream fileOutputStream; try { fileInputStream = new FileInputStream(fileIn); fileOutputStream = new FileOutputStream(fileOut); IOUtils.copy(fileInputStream, fileOutputStream); fileInputStream.close(); fileOutputStream.close(); } catch (final IOException e) { log.error("file io exception", e); return; } } Code Sample 2: private void putAlgosFromJar(File jarfile, AlgoDir dir, Model model) throws FileNotFoundException, IOException { URLClassLoader urlLoader = new URLClassLoader(new URL[] { jarfile.toURI().toURL() }); JarInputStream jis = new JarInputStream(new FileInputStream(jarfile)); JarEntry entry = jis.getNextJarEntry(); String name = null; String tmpdir = System.getProperty("user.dir") + File.separator + Application.getProperty("dir.tmp") + File.separator; byte[] buffer = new byte[1000]; while (entry != null) { name = entry.getName(); if (name.endsWith(".class")) { name = name.substring(0, name.length() - 6); name = name.replace('/', '.'); try { Class<?> cls = urlLoader.loadClass(name); if (IAlgorithm.class.isAssignableFrom(cls) && !cls.isInterface() && ((cls.getModifiers() & Modifier.ABSTRACT) == 0)) { dir.addAlgorithm(cls); model.putClass(cls.getName(), cls); } else if (ISerializable.class.isAssignableFrom(cls)) { model.putClass(cls.getName(), cls); } } catch (ClassNotFoundException e) { e.printStackTrace(); } } else if (Constants.isAllowedImageType(name)) { int lastSep = name.lastIndexOf("/"); if (lastSep != -1) { String dirs = tmpdir + name.substring(0, lastSep); File d = new File(dirs); if (!d.exists()) d.mkdirs(); } String filename = tmpdir + name; File f = new File(filename); if (!f.exists()) { f.createNewFile(); FileOutputStream fos = new FileOutputStream(f); int read = -1; while ((read = jis.read(buffer)) != -1) { fos.write(buffer, 0, read); } fos.close(); } } entry = jis.getNextJarEntry(); } }
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Code Sample 1: private void createJarArchive(File archiveFile, List<File> filesToBeJared, File base) throws Exception { FileOutputStream stream = new FileOutputStream(archiveFile); JarOutputStream out = new JarOutputStream(stream); for (File tobeJared : filesToBeJared) { if (tobeJared == null || !tobeJared.exists() || tobeJared.isDirectory()) continue; String entryName = tobeJared.getAbsolutePath().substring(base.getAbsolutePath().length() + 1).replace("\\", "/"); JarEntry jarEntry = new JarEntry(entryName); jarEntry.setTime(tobeJared.lastModified()); out.putNextEntry(jarEntry); FileInputStream in = new FileInputStream(tobeJared); IOUtils.copy(in, out); IOUtils.closeQuietly(in); out.closeEntry(); } out.close(); stream.close(); System.out.println("Generated file: " + archiveFile); } Code Sample 2: private void copyLocalFile(File sourceFile, File destFile) throws IOException { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } }
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Code Sample 1: private Collection<URL> doSearch(final URL url) throws IOException { final Collection<URL> result = new ArrayList<URL>(); final InputStream is = url.openStream(); final ReadHTML parse = new ReadHTML(is); final StringBuilder buffer = new StringBuilder(); boolean capture = false; int ch; while ((ch = parse.read()) != -1) { if (ch == 0) { final Tag tag = parse.getTag(); if (tag.getName().equalsIgnoreCase("url")) { buffer.setLength(0); capture = true; } else if (tag.getName().equalsIgnoreCase("/url")) { result.add(new URL(buffer.toString())); buffer.setLength(0); capture = false; } } else { if (capture) { buffer.append((char) ch); } } } return result; } Code Sample 2: public void execute() { checkInput(); try { client = new FTPClient(); log("Connecting to " + ftpServer, Project.MSG_INFO); client.connect(ftpServer, ftpPort); checkFtpCode(client, "FTP server refused connection:"); log("Connected", Project.MSG_INFO); log("Logging in", Project.MSG_INFO); if (!client.login(username, password)) { log("Login failed: " + client.getReplyString(), Project.MSG_ERR); } log("Login successful", Project.MSG_INFO); client.enterLocalPassiveMode(); checkFtpCode(client, "Couldn't change connection type to passive: "); log("Changed to passive mode.", Project.MSG_VERBOSE); client.changeWorkingDirectory(remoteDir); checkFtpCode(client, "Can't change to directory: " + remoteDir); log("Listing FTP files", Project.MSG_INFO); for (int i = 0; i < remoteFileStrings.length; i++) { remoteFilePatterns = makePattern(remoteFileStrings[i]); numDir = remoteFilePatterns.length - 1; log("Setting number of directories to: " + numDir, Project.MSG_VERBOSE); FTPFile[] files = client.listFiles(remoteDir); files = followSymLink(client, files); log("# of files in " + remoteDir + " is " + files.length, Project.MSG_VERBOSE); scanDir(0, numDir, files, null); } bw.flush(); bw.close(); } catch (IOException ioe) { if (client.isConnected()) { try { client.disconnect(); } catch (IOException iof) { } } log("Could not connect to " + ftpServer + " " + ioe.getMessage(), Project.MSG_ERR); } }
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Code Sample 1: protected BufferedImage handleICCException() { if (params.uri.startsWith("http://vacani.icc.cat") || params.uri.startsWith("http://louisdl.louislibraries.org")) try { params.uri = params.uri.replace("cdm4/item_viewer.php", "cgi-bin/getimage.exe") + "&DMSCALE=3"; params.uri = params.uri.replace("/u?", "cgi-bin/getimage.exe?CISOROOT=").replace(",", "&CISOPTR=") + "&DMSCALE=3"; URL url = new URL(params.uri); URLConnection connection = url.openConnection(); return processNewUri(connection); } catch (Exception e) { } return null; } Code Sample 2: public static byte[] SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return sha1hash; }
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Code Sample 1: public synchronized List<AnidbSearchResult> getAnimeTitles() throws Exception { URL url = new URL("http", host, "/api/animetitles.dat.gz"); ResultCache cache = getCache(); @SuppressWarnings("unchecked") List<AnidbSearchResult> anime = (List) cache.getSearchResult(null, Locale.ROOT); if (anime != null) { return anime; } Pattern pattern = Pattern.compile("^(?!#)(\\d+)[|](\\d)[|]([\\w-]+)[|](.+)$"); Map<Integer, String> primaryTitleMap = new HashMap<Integer, String>(); Map<Integer, Map<String, String>> officialTitleMap = new HashMap<Integer, Map<String, String>>(); Map<Integer, Map<String, String>> synonymsTitleMap = new HashMap<Integer, Map<String, String>>(); Scanner scanner = new Scanner(new GZIPInputStream(url.openStream()), "UTF-8"); try { while (scanner.hasNextLine()) { Matcher matcher = pattern.matcher(scanner.nextLine()); if (matcher.matches()) { int aid = Integer.parseInt(matcher.group(1)); String type = matcher.group(2); String language = matcher.group(3); String title = matcher.group(4); if (type.equals("1")) { primaryTitleMap.put(aid, title); } else if (type.equals("2") || type.equals("4")) { Map<Integer, Map<String, String>> titleMap = (type.equals("4") ? officialTitleMap : synonymsTitleMap); Map<String, String> languageTitleMap = titleMap.get(aid); if (languageTitleMap == null) { languageTitleMap = new HashMap<String, String>(); titleMap.put(aid, languageTitleMap); } languageTitleMap.put(language, title); } } } } finally { scanner.close(); } anime = new ArrayList<AnidbSearchResult>(primaryTitleMap.size()); for (Entry<Integer, String> entry : primaryTitleMap.entrySet()) { Map<String, String> localizedTitles = new HashMap<String, String>(); if (synonymsTitleMap.containsKey(entry.getKey())) { localizedTitles.putAll(synonymsTitleMap.get(entry.getKey())); } if (officialTitleMap.containsKey(entry.getKey())) { localizedTitles.putAll(officialTitleMap.get(entry.getKey())); } anime.add(new AnidbSearchResult(entry.getKey(), entry.getValue(), localizedTitles)); } return cache.putSearchResult(null, Locale.ROOT, anime); } Code Sample 2: public byte[] applyTransformationOnURL(String url, int format) throws RemoteException { byte[] result = null; try { result = applyTransformation(new URL(url).openStream(), format); } catch (Exception e) { throwServiceException(e); } return result; }
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Code Sample 1: public static String readRss(String feed, int num) { InputStream stream = null; try { feed = appendParam(feed, "num", "" + num); System.out.println("feed=" + feed); URL url = new URL(feed); URLConnection connection = url.openConnection(); connection.setRequestProperty("User-Agent", RSS_USER_AGENT); stream = connection.getInputStream(); return CFileHelper.readInputStream(stream); } catch (Exception e) { throw new CException(e); } finally { CFileHelper.closeStream(stream); } } Code Sample 2: public static void openFile(PublicHubList hublist, String url) { BufferedReader fichAl; String linha; try { if (url.startsWith("http://")) fichAl = new BufferedReader(new InputStreamReader((new java.net.URL(url)).openStream())); else fichAl = new BufferedReader(new FileReader(url)); while ((linha = fichAl.readLine()) != null) { try { hublist.addDCHub(new DCHub(linha, DCHub.hublistFormater)); } catch (Exception e) { e.printStackTrace(); } } } catch (IOException e) { e.printStackTrace(); } }
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Code Sample 1: private Document saveFile(Document document, File file) throws Exception { List<Preference> preferences = prefService.findAll(); if (preferences != null && !preferences.isEmpty()) { preference = preferences.get(0); } SimpleDateFormat sdf = new SimpleDateFormat(Constants.DATEFORMAT_YYYYMMDD); String repo = preference.getRepository(); Calendar calendar = Calendar.getInstance(); StringBuffer sbRepo = new StringBuffer(repo); sbRepo.append(File.separator); StringBuffer sbFolder = new StringBuffer(sdf.format(calendar.getTime())); sbFolder.append(File.separator).append(calendar.get(Calendar.HOUR_OF_DAY)); File folder = new File(sbRepo.append(sbFolder).toString()); if (!folder.exists()) { folder.mkdirs(); } FileChannel fcSource = null, fcDest = null; try { StringBuffer sbFile = new StringBuffer(folder.getAbsolutePath()); StringBuffer fname = new StringBuffer(document.getId().toString()); fname.append(".").append(document.getExt()); sbFile.append(File.separator).append(fname); fcSource = new FileInputStream(file).getChannel(); fcDest = new FileOutputStream(sbFile.toString()).getChannel(); fcDest.transferFrom(fcSource, 0, fcSource.size()); document.setLocation(sbFolder.toString()); documentService.save(document); } catch (FileNotFoundException notFoundEx) { log.error("saveFile file not found: " + document.getName(), notFoundEx); } catch (IOException ioEx) { log.error("saveFile IOException: " + document.getName(), ioEx); } finally { try { if (fcSource != null) { fcSource.close(); } if (fcDest != null) { fcDest.close(); } } catch (Exception e) { log.error(e.getMessage(), e); } } return document; } Code Sample 2: public int[] bubbleSort(int[] data) { for (int i = 0; i < data.length; i++) { for (int j = 0; j < data.length - i - 1; j++) { if (data[j] > data[j + 1]) { int temp = data[j]; data[j] = data[j + 1]; data[j + 1] = temp; } } } return data; }
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Code Sample 1: public static void Sample2(String myField, String condition1, String condition2) throws SQLException { Connection connection = DriverManager.getConnection("jdbc:postgresql://localhost/test", "user", "password"); connection.setAutoCommit(false); Statement st = connection.createStatement(); String sql = "UPDATE myTable SET myField = '" + myField + "' WHERE myOtherField1 = '" + condition1 + "' AND myOtherField2 = '" + condition2 + "'"; int numChanged = st.executeUpdate(sql); // If more than 10 entries change, panic and rollback if(numChanged > 10) { connection.rollback(); } else { connection.commit(); } st.close(); connection.close(); } Code Sample 2: private String getCurrentUniprotAccession(String accession) throws Exception { URL url = new URL(String.format(UNIPROT_ENTRY_QUERY_STRING, accession)); HttpURLConnection connection = (HttpURLConnection) url.openConnection(); HttpURLConnection.setFollowRedirects(true); connection.setRequestMethod("HEAD"); connection.connect(); if (connection.getResponseCode() != 200) { logger.debug("{} seems to be no UniProt accession", accession); throw new Exception("Missing UniProt entry for " + accession); } String effectiveUrl = connection.getURL().toString(); String confirmedAccession = effectiveUrl.substring(effectiveUrl.lastIndexOf('/') + 1); logger.debug("getCurrentUniprotAccession: {} -> {}", new Object[] { accession, confirmedAccession }); return confirmedAccession; }
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Code Sample 1: public static void main(String args[]) throws Exception { FileInputStream fin = new FileInputStream("D:/work/test.txt"); FileOutputStream fout = new FileOutputStream("D:/work/output.txt"); FileChannel inChannel = fin.getChannel(); FileChannel outChannel = fout.getChannel(); ByteBuffer buffer = ByteBuffer.allocate(1024); while (true) { int ret = inChannel.read(buffer); if (ret == -1) break; buffer.flip(); outChannel.write(buffer); buffer.clear(); } } Code Sample 2: public void actionPerformed(ActionEvent e) { int returnVal = chooser.showSaveDialog(jd); if (returnVal == JFileChooser.APPROVE_OPTION) { File file = chooser.getSelectedFile(); String fileName = file.getPath(); String ext = StringUtil.getLowerExtension(fileName); if (!"png".equals(ext)) { fileName += ".png"; file = new File(fileName); } boolean doIt = true; if (file.exists()) { int i = JOptionPane.showConfirmDialog(jd, getMessage("warn_file_exist")); if (i != JOptionPane.YES_OPTION) doIt = false; } else if (!file.getParentFile().exists()) { doIt = file.getParentFile().mkdirs(); } if (doIt) { FileChannel src = null; FileChannel dest = null; try { src = new FileInputStream(imageURL.getPath()).getChannel(); dest = new FileOutputStream(fileName).getChannel(); src.transferTo(0, src.size(), dest); } catch (FileNotFoundException e1) { warn(jd, getMessage("err_no_source_file")); } catch (IOException e2) { warn(jd, getMessage("err_output_target")); } finally { try { if (src != null) src.close(); } catch (IOException e1) { } try { if (dest != null) dest.close(); } catch (IOException e1) { } src = null; dest = null; } } } }
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Code Sample 1: @Override public EntrySet read(EntrySet set) throws ReadFailedException { if (!SourceCache.contains(url)) { SSL.certify(url); try { super.setParser(Parser.detectParser(url.openStream(), url)); final PipedInputStream in = new PipedInputStream(); final PipedOutputStream forParser = new PipedOutputStream(in); new Thread(new Runnable() { public void run() { try { OutputStream out = SourceCache.startCaching(url); InputStream is = url.openStream(); byte[] buffer = new byte[100000]; while (true) { int amountRead = is.read(buffer); if (amountRead == -1) { break; } forParser.write(buffer, 0, amountRead); out.write(buffer, 0, amountRead); } forParser.close(); out.close(); SourceCache.finish(url); } catch (IOException e) { e.printStackTrace(); } } }).start(); super.setIos(in); } catch (Exception e) { throw new ReadFailedException(e); } return super.read(set); } else { try { return SourceCache.get(url).read(set); } catch (IOException e) { throw new ReadFailedException(e); } } } Code Sample 2: @Override public String fetchURL(String urlString) throws ServiceException { try { URL url = new URL(urlString); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String content = ""; String line; while ((line = reader.readLine()) != null) { content += line + "\n"; } reader.close(); return content; } catch (MalformedURLException e) { throw new ServiceException(e.getMessage()); } catch (IOException e) { throw new ServiceException(e.getMessage()); } }
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Code Sample 1: private Map<String, DomAttr> getAttributesFor(final BaseFrame frame) throws IOException { final Map<String, DomAttr> map = createAttributesCopyWithClonedAttribute(frame, "src"); final DomAttr srcAttr = map.get("src"); if (srcAttr == null) { return map; } final Page enclosedPage = frame.getEnclosedPage(); final String suffix = getFileExtension(enclosedPage); final File file = createFile(srcAttr.getValue(), "." + suffix); if (enclosedPage instanceof HtmlPage) { file.delete(); ((HtmlPage) enclosedPage).save(file); } else { final InputStream is = enclosedPage.getWebResponse().getContentAsStream(); final FileOutputStream fos = new FileOutputStream(file); IOUtils.copyLarge(is, fos); IOUtils.closeQuietly(is); IOUtils.closeQuietly(fos); } srcAttr.setValue(file.getParentFile().getName() + FILE_SEPARATOR + file.getName()); return map; } Code Sample 2: public String stringOfUrl(String addr) throws IOException { ByteArrayOutputStream output = new ByteArrayOutputStream(); URL url = new URL(addr); IOUtils.copy(url.openStream(), output); return output.toString(); }
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Code Sample 1: public void readMESHDescriptorFileIntoFiles(String outfiledir) { String inputLine, ins; String filename = getMESHdescriptorfilename(); String uid = ""; String name = ""; String description = ""; String element_of = ""; Vector treenr = new Vector(); Vector related = new Vector(); Vector synonyms = new Vector(); Vector actions = new Vector(); Vector chemicals = new Vector(); Vector allCASchemicals = new Vector(); Set CAS = new TreeSet(); Map treenr2uid = new TreeMap(); Map uid2name = new TreeMap(); String cut1, cut2; try { BufferedReader in = new BufferedReader(new FileReader(filename)); String outfile = outfiledir + "\\mesh"; BufferedWriter out_concept = new BufferedWriter(new FileWriter(outfile + "_concept.txt")); BufferedWriter out_concept_name = new BufferedWriter(new FileWriter(outfile + "_concept_name.txt")); BufferedWriter out_relation = new BufferedWriter(new FileWriter(outfile + "_relation.txt")); BufferedWriter cas_mapping = new BufferedWriter(new FileWriter(outfile + "to_cas_mapping.txt")); BufferedWriter ec_mapping = new BufferedWriter(new FileWriter(outfile + "to_ec_mapping.txt")); Connection db = tools.openDB("kb"); String query = "SELECT hierarchy_complete,uid FROM mesh_tree, mesh_graph_uid_name WHERE term=name"; ResultSet rs = tools.executeQuery(db, query); while (rs.next()) { String db_treenr = rs.getString("hierarchy_complete"); String db_uid = rs.getString("uid"); treenr2uid.put(db_treenr, db_uid); } db.close(); System.out.println("Reading in the DUIDs ..."); BufferedReader in_for_mapping = new BufferedReader(new FileReader(filename)); inputLine = getNextLine(in_for_mapping); boolean leave = false; while ((in_for_mapping != null) && (inputLine != null)) { if (inputLine.startsWith("<DescriptorRecord DescriptorClass")) { inputLine = getNextLine(in_for_mapping); cut1 = "<DescriptorUI>"; cut2 = "</DescriptorUI>"; String mesh_uid = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); if (mesh_uid.compareTo("D041441") == 0) leave = true; inputLine = getNextLine(in_for_mapping); inputLine = getNextLine(in_for_mapping); cut1 = "<String>"; cut2 = "</String>"; String mesh_name = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); uid2name.put(mesh_uid, mesh_name); } inputLine = getNextLine(in_for_mapping); } in_for_mapping.close(); BufferedReader in_ec_numbers = new BufferedReader(new FileReader("e:\\projects\\ondex\\ec_concept_acc.txt")); Set ec_numbers = new TreeSet(); String ec_line = in_ec_numbers.readLine(); while (in_ec_numbers.ready()) { StringTokenizer st = new StringTokenizer(ec_line); st.nextToken(); ec_numbers.add(st.nextToken()); ec_line = in_ec_numbers.readLine(); } in_ec_numbers.close(); tools.printDate(); inputLine = getNextLine(in); while (inputLine != null) { if (inputLine.startsWith("<DescriptorRecord DescriptorClass")) { treenr.clear(); related.clear(); synonyms.clear(); actions.clear(); chemicals.clear(); boolean id_ready = false; boolean line_read = false; while ((inputLine != null) && (!inputLine.startsWith("</DescriptorRecord>"))) { line_read = false; if ((inputLine.startsWith("<DescriptorUI>")) && (!id_ready)) { cut1 = "<DescriptorUI>"; cut2 = "</DescriptorUI>"; uid = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); inputLine = getNextLine(in); inputLine = getNextLine(in); cut1 = "<String>"; cut2 = "</String>"; name = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); id_ready = true; } if (inputLine.compareTo("<SeeRelatedList>") == 0) { while ((inputLine != null) && (inputLine.indexOf("</SeeRelatedList>") == -1)) { if (inputLine.startsWith("<DescriptorUI>")) { cut1 = "<DescriptorUI>"; cut2 = "</DescriptorUI>"; String id = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); related.add(id); } inputLine = getNextLine(in); line_read = true; } } if (inputLine.compareTo("<TreeNumberList>") == 0) { while ((inputLine != null) && (inputLine.indexOf("</TreeNumberList>") == -1)) { if (inputLine.startsWith("<TreeNumber>")) { cut1 = "<TreeNumber>"; cut2 = "</TreeNumber>"; String id = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); treenr.add(id); } inputLine = getNextLine(in); line_read = true; } } if (inputLine.startsWith("<Concept PreferredConceptYN")) { boolean prefConcept = false; if (inputLine.compareTo("<Concept PreferredConceptYN=\"Y\">") == 0) prefConcept = true; while ((inputLine != null) && (inputLine.indexOf("</Concept>") == -1)) { if (inputLine.startsWith("<CASN1Name>") && prefConcept) { cut1 = "<CASN1Name>"; cut2 = "</CASN1Name>"; String casn1 = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); String chem_name = casn1; String chem_description = ""; if (casn1.length() > chem_name.length() + 2) chem_description = casn1.substring(chem_name.length() + 2, casn1.length()); String reg_number = ""; inputLine = getNextLine(in); if (inputLine.startsWith("<RegistryNumber>")) { cut1 = "<RegistryNumber>"; cut2 = "</RegistryNumber>"; reg_number = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); } Vector chemical = new Vector(); String type = ""; if (reg_number.startsWith("EC")) { type = "EC"; reg_number = reg_number.substring(3, reg_number.length()); } else { type = "CAS"; } chemical.add(type); chemical.add(reg_number); chemical.add(chem_name); chemical.add(chem_description); chemicals.add(chemical); if (type.compareTo("CAS") == 0) { if (!CAS.contains(reg_number)) { CAS.add(reg_number); allCASchemicals.add(chemical); } } } if (inputLine.startsWith("<ScopeNote>") && prefConcept) { cut1 = "<ScopeNote>"; description = inputLine.substring(cut1.length(), inputLine.length()); } if (inputLine.startsWith("<TermUI>")) { inputLine = getNextLine(in); cut1 = "<String>"; cut2 = "</String>"; String syn = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); if (syn.indexOf("&amp;") != -1) { String syn1 = syn.substring(0, syn.indexOf("&amp;")); String syn2 = syn.substring(syn.indexOf("amp;") + 4, syn.length()); syn = syn1 + " & " + syn2; } if (name.compareTo(syn) != 0) synonyms.add(syn); } if (inputLine.startsWith("<PharmacologicalAction>")) { inputLine = getNextLine(in); inputLine = getNextLine(in); cut1 = "<DescriptorUI>"; cut2 = "</DescriptorUI>"; String act_ui = inputLine.substring(cut1.length(), inputLine.indexOf(cut2)); actions.add(act_ui); } inputLine = getNextLine(in); line_read = true; } } if (!line_read) inputLine = getNextLine(in); } String pos_tag = ""; element_of = "MESHD"; String is_primary = "0"; out_concept.write(uid + "\t" + pos_tag + "\t" + description + "\t" + element_of + "\t"); out_concept.write(is_primary + "\n"); String name_stemmed = ""; String name_tagged = ""; element_of = "MESHD"; String is_unique = "0"; int is_preferred = 1; String original_name = name; String is_not_substring = "0"; out_concept_name.write(uid + "\t" + name + "\t" + name_stemmed + "\t"); out_concept_name.write(name_tagged + "\t" + element_of + "\t"); out_concept_name.write(is_unique + "\t" + is_preferred + "\t"); out_concept_name.write(original_name + "\t" + is_not_substring + "\n"); is_preferred = 0; for (int i = 0; i < synonyms.size(); i++) { name = (String) synonyms.get(i); original_name = name; out_concept_name.write(uid + "\t" + name + "\t" + name_stemmed + "\t"); out_concept_name.write(name_tagged + "\t" + element_of + "\t"); out_concept_name.write(is_unique + "\t" + is_preferred + "\t"); out_concept_name.write(original_name + "\t" + is_not_substring + "\n"); } String rel_type = "is_r"; element_of = "MESHD"; String from_name = name; for (int i = 0; i < related.size(); i++) { String to_uid = (String) related.get(i); String to_name = (String) uid2name.get(to_uid); out_relation.write(uid + "\t" + to_uid + "\t"); out_relation.write(rel_type + "\t" + element_of + "\t"); out_relation.write(from_name + "\t" + to_name + "\n"); } rel_type = "is_a"; element_of = "MESHD"; related.clear(); for (int i = 0; i < treenr.size(); i++) { String tnr = (String) treenr.get(i); if (tnr.length() > 3) tnr = tnr.substring(0, tnr.lastIndexOf(".")); String rel_uid = (String) treenr2uid.get(tnr); if (rel_uid != null) related.add(rel_uid); else System.out.println(uid + ": No DUI found for " + tnr); } for (int i = 0; i < related.size(); i++) { String to_uid = (String) related.get(i); String to_name = (String) uid2name.get(to_uid); out_relation.write(uid + "\t" + to_uid + "\t"); out_relation.write(rel_type + "\t" + element_of + "\t"); out_relation.write(from_name + "\t" + to_name + "\n"); } if (related.size() == 0) System.out.println(uid + ": No is_a relations"); rel_type = "act"; element_of = "MESHD"; for (int i = 0; i < actions.size(); i++) { String to_uid = (String) actions.get(i); String to_name = (String) uid2name.get(to_uid); out_relation.write(uid + "\t" + to_uid + "\t"); out_relation.write(rel_type + "\t" + element_of + "\t"); out_relation.write(from_name + "\t" + to_name + "\n"); } String method = "IMPM"; String score = "1.0"; for (int i = 0; i < chemicals.size(); i++) { Vector chemical = (Vector) chemicals.get(i); String type = (String) chemical.get(0); String chem = (String) chemical.get(1); if (!ec_numbers.contains(chem) && (type.compareTo("EC") == 0)) { if (chem.compareTo("1.14.-") == 0) chem = "1.14.-.-"; else System.out.println("MISSING EC: " + chem); } String id = type + ":" + chem; String entry = uid + "\t" + id + "\t" + method + "\t" + score + "\n"; if (type.compareTo("CAS") == 0) cas_mapping.write(entry); else ec_mapping.write(entry); } } else inputLine = getNextLine(in); } System.out.println("End import descriptors"); tools.printDate(); in.close(); out_concept.close(); out_concept_name.close(); out_relation.close(); cas_mapping.close(); ec_mapping.close(); outfile = outfiledir + "\\cas"; out_concept = new BufferedWriter(new FileWriter(outfile + "_concept.txt")); out_concept_name = new BufferedWriter(new FileWriter(outfile + "_concept_name.txt")); BufferedWriter out_concept_acc = new BufferedWriter(new FileWriter(outfile + "_concept_acc.txt")); for (int i = 0; i < allCASchemicals.size(); i++) { Vector chemical = (Vector) allCASchemicals.get(i); String cas_id = "CAS:" + (String) chemical.get(1); String cas_name = (String) chemical.get(2); String cas_pos_tag = ""; String cas_description = (String) chemical.get(3); String cas_element_of = "CAS"; String cas_is_primary = "0"; out_concept.write(cas_id + "\t" + cas_pos_tag + "\t" + cas_description + "\t"); out_concept.write(cas_element_of + "\t" + cas_is_primary + "\n"); String cas_name_stemmed = ""; String cas_name_tagged = ""; String cas_is_unique = "0"; String cas_is_preferred = "0"; String cas_original_name = cas_name; String cas_is_not_substring = "0"; out_concept_name.write(cas_id + "\t" + cas_name + "\t" + cas_name_stemmed + "\t"); out_concept_name.write(cas_name_tagged + "\t" + cas_element_of + "\t"); out_concept_name.write(cas_is_unique + "\t" + cas_is_preferred + "\t"); out_concept_name.write(cas_original_name + "\t" + cas_is_not_substring + "\n"); out_concept_acc.write(cas_id + "\t" + (String) chemical.get(1) + "\t"); out_concept_acc.write(cas_element_of + "\n"); } out_concept.close(); out_concept_name.close(); out_concept_acc.close(); } catch (Exception e) { settings.writeLog("Error while reading MESH descriptor file: " + e.getMessage()); } } Code Sample 2: public static boolean copyFile(File src, File target) throws IOException { if (src == null || target == null || !src.exists()) return false; if (!target.exists()) if (!createNewFile(target)) return false; InputStream ins = new BufferedInputStream(new FileInputStream(src)); OutputStream ops = new BufferedOutputStream(new FileOutputStream(target)); int b; while (-1 != (b = ins.read())) ops.write(b); Streams.safeClose(ins); Streams.safeFlush(ops); Streams.safeClose(ops); return target.setLastModified(src.lastModified()); }
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Code Sample 1: protected URL[][] getImageLinks(final URL url) { Lexer lexer; URL[][] ret; if (null != url) { try { lexer = new Lexer(url.openConnection()); ret = extractImageLinks(lexer, url); } catch (Throwable t) { System.out.println(t.getMessage()); ret = NONE; } } else ret = NONE; return (ret); } Code Sample 2: public Vector Get() throws Exception { String query_str = BuildYahooQueryString(); if (query_str == null) return null; Vector result = new Vector(); HttpURLConnection urlc = null; try { URL url = new URL(URL_YAHOO_QUOTE + "?" + query_str + "&" + FORMAT); urlc = (HttpURLConnection) url.openConnection(); urlc.setRequestMethod("GET"); urlc.setDoOutput(true); urlc.setDoInput(true); urlc.setUseCaches(false); urlc.setAllowUserInteraction(false); urlc.setRequestProperty("Content-type", "text/html;charset=UTF-8"); if (urlc.getResponseCode() == 200) { InputStream in = urlc.getInputStream(); BufferedReader reader = null; try { reader = new BufferedReader(new InputStreamReader(in, "UTF-8")); String msg = null; while ((msg = reader.readLine()) != null) { ExchangeRate rate = ParseYahooData(msg); if (rate != null) result.add(rate); } } finally { if (reader != null) try { reader.close(); } catch (Exception e1) { } if (in != null) try { in.close(); } catch (Exception e1) { } } return result; } } finally { if (urlc != null) try { urlc.disconnect(); } catch (Exception e) { } } return null; }
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Code Sample 1: private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } Code Sample 2: private void compress(File target, Set<File> files) throws CacheOperationException, ConfigurationException { ZipOutputStream zipOutput = null; try { zipOutput = new ZipOutputStream(new BufferedOutputStream(new FileOutputStream(target))); for (File file : files) { BufferedInputStream fileInput = null; File cachePathName = new File(cacheFolder, file.getPath()); try { if (!cachePathName.exists()) { throw new CacheOperationException("Expected to add file ''{0}'' to export archive ''{1}'' (Account : {2}) but it " + "has gone missing (cause unknown). This can indicate implementation or deployment " + "error. Aborting export operation as a safety precaution.", cachePathName.getPath(), target.getAbsolutePath(), account.getOid()); } fileInput = new BufferedInputStream(new FileInputStream(cachePathName)); ZipEntry entry = new ZipEntry(file.getPath()); entry.setSize(cachePathName.length()); entry.setTime(cachePathName.lastModified()); zipOutput.putNextEntry(entry); cacheLog.debug("Added new export zip entry ''{0}''.", file.getPath()); int count, total = 0; int buffer = 2048; byte[] data = new byte[buffer]; while ((count = fileInput.read(data, 0, buffer)) != -1) { zipOutput.write(data, 0, count); total += count; } zipOutput.flush(); if (total != cachePathName.length()) { throw new CacheOperationException("Only wrote {0} out of {1} bytes when archiving file ''{2}'' (Account : {3}). " + "This could have occured either due implementation error or file I/O error. " + "Aborting archive operation to prevent a potentially corrupt export archive to " + "be created.", total, cachePathName.length(), cachePathName.getPath(), account.getOid()); } else { cacheLog.debug("Wrote {0} out of {1} bytes to zip entry ''{2}''", total, cachePathName.length(), file.getPath()); } } catch (SecurityException e) { throw new ConfigurationException("Security manager has denied r/w access when attempting to read file ''{0}'' and " + "write it to archive ''{1}'' (Account : {2}) : {3}", e, cachePathName.getPath(), target, account.getOid(), e.getMessage()); } catch (IllegalArgumentException e) { throw new CacheOperationException("Error creating ZIP archive for account ID = {0} : {1}", e, account.getOid(), e.getMessage()); } catch (FileNotFoundException e) { throw new CacheOperationException("Attempted to include file ''{0}'' in export archive but it has gone missing " + "(Account : {1}). Possible implementation error in local file cache. Aborting " + "export operation as a precaution ({2})", e, cachePathName.getPath(), account.getOid(), e.getMessage()); } catch (ZipException e) { throw new CacheOperationException("Error writing export archive for account ID = {0} : {1}", e, account.getOid(), e.getMessage()); } catch (IOException e) { throw new CacheOperationException("I/O error while creating export archive for account ID = {0}. " + "Operation aborted ({1})", e, account.getOid(), e.getMessage()); } finally { if (zipOutput != null) { try { zipOutput.closeEntry(); } catch (Throwable t) { cacheLog.warn("Unable to close zip entry for file ''{0}'' in export archive ''{1}'' " + "(Account : {2}) : {3}.", t, file.getPath(), target.getAbsolutePath(), account.getOid(), t.getMessage()); } } if (fileInput != null) { try { fileInput.close(); } catch (Throwable t) { cacheLog.warn("Failed to close input stream from file ''{0}'' being added " + "to export archive (Account : {1}) : {2}", t, cachePathName.getPath(), account.getOid(), t.getMessage()); } } } } } catch (FileNotFoundException e) { throw new CacheOperationException("Unable to create target export archive ''{0}'' for account {1) : {2}", e, target, account.getOid(), e.getMessage()); } finally { try { if (zipOutput != null) { zipOutput.close(); } } catch (Throwable t) { cacheLog.warn("Failed to close the stream to export archive ''{0}'' : {1}.", t, target, t.getMessage()); } } }
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Code Sample 1: public static void doVersionCheck(View view) { view.showWaitCursor(); try { URL url = new URL(jEdit.getProperty("version-check.url")); InputStream in = url.openStream(); BufferedReader bin = new BufferedReader(new InputStreamReader(in)); String line; String version = null; String build = null; while ((line = bin.readLine()) != null) { if (line.startsWith(".version")) version = line.substring(8).trim(); else if (line.startsWith(".build")) build = line.substring(6).trim(); } bin.close(); if (version != null && build != null) { if (jEdit.getBuild().compareTo(build) < 0) newVersionAvailable(view, version, url); else { GUIUtilities.message(view, "version-check" + ".up-to-date", new String[0]); } } } catch (IOException e) { String[] args = { jEdit.getProperty("version-check.url"), e.toString() }; GUIUtilities.error(view, "read-error", args); } view.hideWaitCursor(); } Code Sample 2: public static boolean copyFileCover(String srcFileName, String descFileName, boolean coverlay) { File srcFile = new File(srcFileName); if (!srcFile.exists()) { System.out.println("复制文件失败,源文件" + srcFileName + "不存在!"); return false; } else if (!srcFile.isFile()) { System.out.println("复制文件失败," + srcFileName + "不是一个文件!"); return false; } File descFile = new File(descFileName); if (descFile.exists()) { if (coverlay) { System.out.println("目标文件已存在,准备删除!"); if (!FileOperateUtils.delFile(descFileName)) { System.out.println("删除目标文件" + descFileName + "失败!"); return false; } } else { System.out.println("复制文件失败,目标文件" + descFileName + "已存在!"); return false; } } else { if (!descFile.getParentFile().exists()) { System.out.println("目标文件所在的目录不存在,创建目录!"); if (!descFile.getParentFile().mkdirs()) { System.out.println("创建目标文件所在的目录失败!"); return false; } } } int readByte = 0; InputStream ins = null; OutputStream outs = null; try { ins = new FileInputStream(srcFile); outs = new FileOutputStream(descFile); byte[] buf = new byte[1024]; while ((readByte = ins.read(buf)) != -1) { outs.write(buf, 0, readByte); } System.out.println("复制单个文件" + srcFileName + "到" + descFileName + "成功!"); return true; } catch (Exception e) { System.out.println("复制文件失败:" + e.getMessage()); return false; } finally { if (outs != null) { try { outs.close(); } catch (IOException oute) { oute.printStackTrace(); } } if (ins != null) { try { ins.close(); } catch (IOException ine) { ine.printStackTrace(); } } } }
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Code Sample 1: private static String getDigestPassword(String streamId, String password) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); } catch (NoSuchAlgorithmException e) { throw (RuntimeException) new IllegalStateException().initCause(e); } md.update((streamId + password).getBytes()); byte[] uid = md.digest(); int length = uid.length; StringBuilder digPass = new StringBuilder(); for (int i = 0; i < length; ) { int k = uid[i++]; int iint = k & 0xff; String buf = Integer.toHexString(iint); if (buf.length() == 1) { buf = "0" + buf; } digPass.append(buf); } return digPass.toString(); } Code Sample 2: public static String getMD5Str(String str) { MessageDigest messageDigest = null; try { messageDigest = MessageDigest.getInstance("MD5"); messageDigest.reset(); messageDigest.update(str.getBytes("UTF-8")); } catch (NoSuchAlgorithmException e) { System.out.println("NoSuchAlgorithmException caught!"); System.exit(-1); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } byte[] byteArray = messageDigest.digest(); StringBuffer md5StrBuff = new StringBuffer(); for (int i = 0; i < byteArray.length; i++) { if (Integer.toHexString(0xFF & byteArray[i]).length() == 1) md5StrBuff.append("0").append(Integer.toHexString(0xFF & byteArray[i])); else md5StrBuff.append(Integer.toHexString(0xFF & byteArray[i])); } return md5StrBuff.substring(8, 24).toString().toUpperCase(); }
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Code Sample 1: void shutdown(final boolean unexpected) { if (unexpected) { log.warn("S H U T D O W N --- received unexpected shutdown request."); } else { log.info("S H U T D O W N --- start regular shutdown."); } if (this.uncaughtException != null) { log.warn("Shutdown probably caused by the following Exception.", this.uncaughtException); } log.error("check if we need the controler listener infrastructure"); if (this.dumpDataAtEnd) { new PopulationWriter(this.population, this.network).write(this.controlerIO.getOutputFilename(FILENAME_POPULATION)); new NetworkWriter(this.network).write(this.controlerIO.getOutputFilename(FILENAME_NETWORK)); new ConfigWriter(this.config).write(this.controlerIO.getOutputFilename(FILENAME_CONFIG)); if (!unexpected && this.getConfig().vspExperimental().isWritingOutputEvents()) { File toFile = new File(this.controlerIO.getOutputFilename("output_events.xml.gz")); File fromFile = new File(this.controlerIO.getIterationFilename(this.getLastIteration(), "events.xml.gz")); IOUtils.copyFile(fromFile, toFile); } } if (unexpected) { log.info("S H U T D O W N --- unexpected shutdown request completed."); } else { log.info("S H U T D O W N --- regular shutdown completed."); } try { Runtime.getRuntime().removeShutdownHook(this.shutdownHook); } catch (IllegalStateException e) { log.info("Cannot remove shutdown hook. " + e.getMessage()); } this.shutdownHook = null; this.collectLogMessagesAppender = null; IOUtils.closeOutputDirLogging(); } Code Sample 2: public void run() { try { HttpPost httpPostRequest = new HttpPost(Feesh.device_URL); List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(); nameValuePairs.add(new BasicNameValuePair("c", "feed")); nameValuePairs.add(new BasicNameValuePair("amount", String.valueOf(foodAmount))); nameValuePairs.add(new BasicNameValuePair("type", String.valueOf(foodType))); httpPostRequest.setEntity(new UrlEncodedFormEntity(nameValuePairs)); HttpResponse httpResponse = (HttpResponse) new DefaultHttpClient().execute(httpPostRequest); HttpEntity entity = httpResponse.getEntity(); String resultString = ""; if (entity != null) { InputStream instream = entity.getContent(); resultString = convertStreamToString(instream); instream.close(); } Message msg_toast = new Message(); msg_toast.obj = resultString; toast_handler.sendMessage(msg_toast); } catch (UnsupportedEncodingException e) { e.printStackTrace(); } catch (ClientProtocolException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } }
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Code Sample 1: public ProgramMessageSymbol deleteProgramMessageSymbol(int id) throws AdaptationException { ProgramMessageSymbol pmt = null; Connection connection = null; Statement statement = null; ResultSet resultSet = null; try { String query = "SELECT * FROM ProgramMessageSymbols " + "WHERE id = " + id; connection = DriverManager.getConnection(CONN_STR); statement = connection.createStatement(); resultSet = statement.executeQuery(query); if (!resultSet.next()) { String msg = "Attempt to delete program message type " + "failed."; log.error(msg); ; throw new AdaptationException(msg); } pmt = getProgramMessageSymbol(resultSet); query = "DELETE FROM ProgramMessageSymbols " + "WHERE id = " + id; statement.executeUpdate(query); connection.commit(); } catch (SQLException ex) { try { connection.rollback(); } catch (Exception e) { } String msg = "SQLException in deleteProgramMessageSymbol"; log.error(msg, ex); throw new AdaptationException(msg, ex); } finally { try { resultSet.close(); } catch (Exception ex) { } try { statement.close(); } catch (Exception ex) { } try { connection.close(); } catch (Exception ex) { } } return pmt; } Code Sample 2: public static void main(String[] argv) { ComboPooledDataSource cpds = null; Connection c = null; try { cpds = new ComboPooledDataSource(); cpds.setDriverClass("org.postgresql.Driver"); cpds.setJdbcUrl("jdbc:postgresql://localhost/c3p0-test"); cpds.setUser("swaldman"); cpds.setPassword("test"); cpds.setMinPoolSize(5); cpds.setAcquireIncrement(5); cpds.setMaxPoolSize(20); c = cpds.getConnection(); c.setAutoCommit(false); Statement stmt = c.createStatement(); stmt.executeUpdate("CREATE TABLE pwtest_table (col1 char(5), col2 char(5))"); ResultSet rs = stmt.executeQuery("SELECT * FROM pwtest_table"); System.err.println("rs: " + rs); System.err.println("rs.getStatement(): " + rs.getStatement()); System.err.println("rs.getStatement().getConnection(): " + rs.getStatement().getConnection()); } catch (Exception e) { e.printStackTrace(); } finally { try { if (c != null) c.rollback(); } catch (Exception e) { e.printStackTrace(); } try { if (cpds != null) cpds.close(); } catch (Exception e) { e.printStackTrace(); } } }
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Code Sample 1: public static void kopirujSoubor(File vstup, File vystup) throws IOException { FileChannel sourceChannel = new FileInputStream(vstup).getChannel(); FileChannel destinationChannel = new FileOutputStream(vystup).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } Code Sample 2: private synchronized Frame addFrame(INSERT_TYPE type, File source) throws IOException { if (source == null) throw new NullPointerException("Parameter 'source' is null"); if (!source.exists()) throw new IOException("File does not exist: " + source.getAbsolutePath()); if (source.length() <= 0) throw new IOException("File is empty: " + source.getAbsolutePath()); File newLocation = new File(Settings.getPropertyString(ConstantKeys.project_dir), formatFileName(frames_.size())); if (newLocation.compareTo(source) != 0) { switch(type) { case MOVE: source.renameTo(newLocation); break; case COPY: FileChannel inChannel = new FileInputStream(source).getChannel(); FileChannel outChannel = new FileOutputStream(newLocation).getChannel(); inChannel.transferTo(0, inChannel.size(), outChannel); if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); break; } } Frame f = new Frame(newLocation); f.createThumbNail(); frames_.add(f); return f; }
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Code Sample 1: public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; } Code Sample 2: public static boolean decodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; }
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Code Sample 1: private void work(String[] args) throws Exception { String dictLocation = CONTENT_URL; String cpeContentDirName = CONTENT_DIR; String fn = dictLocation.substring(dictLocation.lastIndexOf("/") + 1); File destFile = new File(cpeContentDirName + File.separator + fn); URL url = new URL(dictLocation); URLConnection conn = url.openConnection(); conn.connect(); long lmodifiedRemote = conn.getLastModified(); boolean needToDownload = false; if (destFile.exists()) { System.out.println(destFile.getAbsolutePath() + " exists, check modification time"); long lmodifiedLocal = destFile.lastModified(); if (lmodifiedRemote > lmodifiedLocal) { System.out.println("Server file is newer, need to download"); needToDownload = true; } else { System.out.println("Local version is newer, no need to download"); } } else { System.out.println("Local version doesn't exist, need to download"); needToDownload = true; } if (needToDownload) { InputStream is = conn.getInputStream(); FileOutputStream fos = new FileOutputStream(destFile); byte[] buff = new byte[8192]; int read = 0; while ((read = is.read(buff)) > 0) { fos.write(buff, 0, read); } fos.flush(); fos.close(); is.close(); } } Code Sample 2: public static void copy(FileInputStream source, FileOutputStream dest) throws IOException { FileChannel in = null, out = null; try { in = source.getChannel(); out = dest.getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) in.close(); if (out != null) out.close(); } }
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Code Sample 1: public Controller(String m_hostname, String team, boolean m_shouldexit) throws InternalException { m_received_messages = new ConcurrentLinkedQueue<ReceivedMessage>(); m_fragmsgs = new ArrayList<String>(); m_customizedtaunts = new HashMap<Integer, String>(); m_nethandler = new CachingNetHandler(); m_drawingpanel = GLDrawableFactory.getFactory().createGLCanvas(new GLCapabilities()); m_user = System.getProperty("user.name"); m_chatbuffer = new StringBuffer(); this.m_shouldexit = m_shouldexit; isChatPaused = false; isRunning = true; m_lastbullet = 0; try { BufferedReader in = new BufferedReader(new FileReader(HogsConstants.FRAGMSGS_FILE)); String str; while ((str = in.readLine()) != null) { m_fragmsgs.add(str); } in.close(); } catch (IOException e) { e.printStackTrace(); } String newFile = PathFinder.getCustsFile(); boolean exists = (new File(newFile)).exists(); Reader reader = null; if (exists) { try { reader = new FileReader(newFile); } catch (FileNotFoundException e3) { e3.printStackTrace(); } } else { Object[] options = { "Yes, create a .hogsrc file", "No, use default taunts" }; int n = JOptionPane.showOptionDialog(m_window, "You do not have customized taunts in your home\n " + "directory. Would you like to create a customizable file?", "Hogs Customization", JOptionPane.YES_NO_OPTION, JOptionPane.QUESTION_MESSAGE, null, options, options[1]); if (n == 0) { try { FileChannel srcChannel = new FileInputStream(HogsConstants.CUSTS_TEMPLATE).getChannel(); FileChannel dstChannel; dstChannel = new FileOutputStream(newFile).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); reader = new FileReader(newFile); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } } else { try { reader = new FileReader(HogsConstants.CUSTS_TEMPLATE); } catch (FileNotFoundException e3) { e3.printStackTrace(); } } } try { m_netengine = NetEngine.forHost(m_user, m_hostname, 1820, m_nethandler); m_netengine.start(); } catch (UnknownHostException e) { e.printStackTrace(); } catch (NetException e) { e.printStackTrace(); } m_gamestate = m_netengine.getCurrentState(); m_gamestate.setInChatMode(false); m_gamestate.setController(this); try { readFromFile(reader); } catch (NumberFormatException e3) { e3.printStackTrace(); } catch (IOException e3) { e3.printStackTrace(); } catch (InternalException e3) { e3.printStackTrace(); } GraphicsEnvironment ge = GraphicsEnvironment.getLocalGraphicsEnvironment(); GraphicsDevice m_graphicsdevice = ge.getDefaultScreenDevice(); m_window = new GuiFrame(m_drawingpanel, m_gamestate); m_graphics = null; try { m_graphics = new GraphicsEngine(m_drawingpanel, m_gamestate); } catch (InternalException e1) { e1.printStackTrace(); System.exit(0); } m_drawingpanel.addGLEventListener(m_graphics); m_physics = new Physics(); if (team == null) { team = HogsConstants.TEAM_NONE; } if (!(team.toLowerCase().equals(HogsConstants.TEAM_NONE) || team.toLowerCase().equals(HogsConstants.TEAM_RED) || team.toLowerCase().equals(HogsConstants.TEAM_BLUE))) { throw new InternalException("Invalid team name!"); } String orig_team = team; Craft local_craft = m_gamestate.getLocalCraft(); if (m_gamestate.getNumCrafts() == 0) { local_craft.setTeamname(team); } else if (m_gamestate.isInTeamMode()) { if (team == HogsConstants.TEAM_NONE) { int red_craft = m_gamestate.getNumOnTeam(HogsConstants.TEAM_RED); int blue_craft = m_gamestate.getNumOnTeam(HogsConstants.TEAM_BLUE); String new_team; if (red_craft > blue_craft) { new_team = HogsConstants.TEAM_BLUE; } else if (red_craft < blue_craft) { new_team = HogsConstants.TEAM_RED; } else { new_team = Math.random() > 0.5 ? HogsConstants.TEAM_BLUE : HogsConstants.TEAM_RED; } m_gamestate.getLocalCraft().setTeamname(new_team); } else { local_craft.setTeamname(team); } } else { local_craft.setTeamname(HogsConstants.TEAM_NONE); if (orig_team != null) { m_window.displayText("You cannot join a team, this is an individual game."); } } if (!local_craft.getTeamname().equals(HogsConstants.TEAM_NONE)) { m_window.displayText("You are joining the " + local_craft.getTeamname() + " team."); } m_drawingpanel.setSize(m_drawingpanel.getWidth(), m_drawingpanel.getHeight()); m_middlepos = new java.awt.Point(m_drawingpanel.getWidth() / 2, m_drawingpanel.getHeight() / 2); m_curpos = new java.awt.Point(m_drawingpanel.getWidth() / 2, m_drawingpanel.getHeight() / 2); GuiKeyListener k_listener = new GuiKeyListener(); GuiMouseListener m_listener = new GuiMouseListener(); m_window.addKeyListener(k_listener); m_drawingpanel.addKeyListener(k_listener); m_window.addMouseListener(m_listener); m_drawingpanel.addMouseListener(m_listener); m_window.addMouseMotionListener(m_listener); m_drawingpanel.addMouseMotionListener(m_listener); m_drawingpanel.addFocusListener(new FocusAdapter() { public void focusLost(FocusEvent evt) { m_window.setMouseTrapped(false); m_window.returnMouseToCenter(); } }); m_window.addFocusListener(new FocusAdapter() { public void focusLost(FocusEvent evt) { m_window.setMouseTrapped(false); m_window.returnMouseToCenter(); } }); m_window.requestFocus(); } Code Sample 2: public void unpack(File destDirectory, boolean delete) { if (delete) delete(destDirectory); if (destDirectory.exists()) throw new ContentPackageException("Destination directory already exists."); this.destDirectory = destDirectory; this.manifestFile = new File(destDirectory, MANIFEST_FILE_NAME); try { if (zipInputStream == null) zipInputStream = new ZipInputStream(new FileInputStream(zipFile)); ZipEntry zipEntry; while ((zipEntry = zipInputStream.getNextEntry()) != null) { File destFile = new File(destDirectory, zipEntry.getName()); destFile.getParentFile().mkdirs(); if (!zipEntry.isDirectory()) { BufferedOutputStream output = new BufferedOutputStream(new FileOutputStream(destFile), BUFFER_SIZE); byte[] buffer = new byte[BUFFER_SIZE]; int length; while ((length = zipInputStream.read(buffer, 0, BUFFER_SIZE)) != -1) output.write(buffer, 0, length); output.close(); zipInputStream.closeEntry(); } } zipInputStream.close(); } catch (IOException ex) { throw new ContentPackageException(ex); } }
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Code Sample 1: public static void main(String[] args) { String inFile = "test_data/blobs.png"; String outFile = "ReadWriteTest.png"; itkImageFileReaderUC2_Pointer reader = itkImageFileReaderUC2.itkImageFileReaderUC2_New(); itkImageFileWriterUC2_Pointer writer = itkImageFileWriterUC2.itkImageFileWriterUC2_New(); reader.SetFileName(inFile); writer.SetFileName(outFile); writer.SetInput(reader.GetOutput()); writer.Update(); } Code Sample 2: public static void concatFiles(List<File> sourceFiles, File destFile) throws IOException { FileOutputStream outFile = new FileOutputStream(destFile); FileChannel outChannel = outFile.getChannel(); for (File f : sourceFiles) { FileInputStream fis = new FileInputStream(f); FileChannel channel = fis.getChannel(); channel.transferTo(0, channel.size(), outChannel); channel.close(); fis.close(); } outChannel.close(); }
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Code Sample 1: public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } Code Sample 2: private void Download(String uri) throws MalformedURLException { URL url = new URL(uri); try { bm = BitmapFactory.decodeStream(url.openConnection().getInputStream()); } catch (IOException ex) { bm = getError(); } }
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Code Sample 1: public synchronized String encrypt(String password) { try { MessageDigest md = null; md = MessageDigest.getInstance("SHA-1"); md.update(password.getBytes("UTF-8")); byte raw[] = md.digest(); byte[] hash = (new Base64()).encode(raw); return new String(hash); } catch (NoSuchAlgorithmException e) { System.out.println("Algorithm SHA-1 is not supported"); return null; } catch (UnsupportedEncodingException e) { System.out.println("UTF-8 encoding is not supported"); return null; } } Code Sample 2: public static void copyFile(File src, File dest) throws IOException { FileInputStream fis = new FileInputStream(src); FileOutputStream fos = new FileOutputStream(dest); FileChannel channelSrc = fis.getChannel(); FileChannel channelDest = fos.getChannel(); channelSrc.transferTo(0, channelSrc.size(), channelDest); fis.close(); fos.close(); }
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Code Sample 1: private void simulate() throws Exception { BufferedWriter out = null; out = new BufferedWriter(new FileWriter(outFile)); out.write("#Thread\tReputation\tAction\n"); out.flush(); System.out.println("Simulate..."); File file = new File(trsDemoSimulationfile); ObtainUserReputation obtainUserReputationRequest = new ObtainUserReputation(); ObtainUserReputationResponse obtainUserReputationResponse; RateUser rateUserRequest; RateUserResponse rateUserResponse; FileInputStream fis = new FileInputStream(file); BufferedReader br = new BufferedReader(new InputStreamReader(fis)); String call = br.readLine(); while (call != null) { rateUserRequest = generateRateUserRequest(call); try { rateUserResponse = trsPort.rateUser(rateUserRequest); System.out.println("----------------R A T I N G-------------------"); System.out.println("VBE: " + rateUserRequest.getVbeId()); System.out.println("VO: " + rateUserRequest.getVoId()); System.out.println("USER: " + rateUserRequest.getUserId()); System.out.println("SERVICE: " + rateUserRequest.getServiceId()); System.out.println("ACTION: " + rateUserRequest.getActionId()); System.out.println("OUTCOME: " + rateUserResponse.isOutcome()); System.out.println("----------------------------------------------"); assertEquals("The outcome field of the rateUser should be true: MESSAGE=" + rateUserResponse.getMessage(), true, rateUserResponse.isOutcome()); } catch (RemoteException e) { fail(e.getMessage()); } obtainUserReputationRequest.setIoi(null); obtainUserReputationRequest.setServiceId(null); obtainUserReputationRequest.setUserId(rateUserRequest.getUserId()); obtainUserReputationRequest.setVbeId(rateUserRequest.getVbeId()); obtainUserReputationRequest.setVoId(null); try { obtainUserReputationResponse = trsPort.obtainUserReputation(obtainUserReputationRequest); System.out.println("-----------R E P U T A T I O N----------------"); System.out.println("VBE: " + obtainUserReputationRequest.getVbeId()); System.out.println("VO: " + obtainUserReputationRequest.getVoId()); System.out.println("USER: " + obtainUserReputationRequest.getUserId()); System.out.println("SERVICE: " + obtainUserReputationRequest.getServiceId()); System.out.println("IOI: " + obtainUserReputationRequest.getIoi()); System.out.println("REPUTATION: " + obtainUserReputationResponse.getReputation()); System.out.println("----------------------------------------------"); assertEquals("The outcome field of the obtainUserReputation should be true: MESSAGE=" + obtainUserReputationResponse.getMessage(), true, obtainUserReputationResponse.isOutcome()); assertEquals(0.0, obtainUserReputationResponse.getReputation(), 1.0); } catch (RemoteException e) { fail(e.getMessage()); } obtainUserReputationRequest.setIoi(null); obtainUserReputationRequest.setServiceId(null); obtainUserReputationRequest.setUserId(rateUserRequest.getUserId()); obtainUserReputationRequest.setVbeId(rateUserRequest.getVbeId()); obtainUserReputationRequest.setVoId(rateUserRequest.getVoId()); try { obtainUserReputationResponse = trsPort.obtainUserReputation(obtainUserReputationRequest); System.out.println("-----------R E P U T A T I O N----------------"); System.out.println("VBE: " + obtainUserReputationRequest.getVbeId()); System.out.println("VO: " + obtainUserReputationRequest.getVoId()); System.out.println("USER: " + obtainUserReputationRequest.getUserId()); System.out.println("SERVICE: " + obtainUserReputationRequest.getServiceId()); System.out.println("IOI: " + obtainUserReputationRequest.getIoi()); System.out.println("REPUTATION: " + obtainUserReputationResponse.getReputation()); System.out.println("----------------------------------------------"); assertEquals("The outcome field of the obtainUserReputation should be true: MESSAGE=" + obtainUserReputationResponse.getMessage(), true, obtainUserReputationResponse.isOutcome()); assertEquals(0.0, obtainUserReputationResponse.getReputation(), 1.0); } catch (RemoteException e) { fail(e.getMessage()); } call = br.readLine(); } fis.close(); br.close(); out.flush(); out.close(); } Code Sample 2: private void copyFile(File source, File target) throws IOException { FileChannel srcChannel = new FileInputStream(source).getChannel(); FileChannel dstChannel = new FileOutputStream(target).getChannel(); dstChannel.transferFrom(srcChannel, 0, srcChannel.size()); srcChannel.close(); dstChannel.close(); }
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Code Sample 1: public void close() { try { if (writer != null) { BufferedReader reader; writer.close(); writer = new BufferedWriter(new FileWriter(fileName)); for (int i = 0; i < headers.size(); i++) writer.write(headers.get(i) + ","); writer.write("\n"); reader = new BufferedReader(new FileReader(file)); while (reader.ready()) writer.write(reader.readLine() + "\n"); reader.close(); writer.close(); file.delete(); } } catch (java.io.IOException e) { throw new RuntimeException(e); } } Code Sample 2: public static void downloadURLNow(URL url, File to, SHA1Sum sha1, boolean force) throws Exception { { String sep = System.getProperty("file.separator"); String folders = to.getPath(); String path = ""; for (int i = 0; i < folders.length(); i++) { path += folders.charAt(i); if (path.endsWith(sep)) { File f = new File(path); if (!f.exists()) f.mkdir(); if (!f.isDirectory()) { Out.error(URLDownloader.class, path + " is not a directory!"); return; } } } } Out.info(URLDownloader.class, "Downloading " + url.toExternalForm()); URLConnection uc = url.openConnection(); DataInputStream is = new DataInputStream(new BufferedInputStream(uc.getInputStream())); FileOutputStream os = new FileOutputStream(to); byte[] b = new byte[1024]; int fileLength = uc.getHeaderFieldInt("Content-Length", 0) / b.length; Task task = null; if (fileLength > 0) task = TaskManager.createTask(url.toExternalForm(), fileLength, "kB"); do { int c = is.read(b); if (c == -1) break; os.write(b, 0, c); if (task != null) task.advanceProgress(); } while (true); if (task != null) task.complete(); os.close(); is.close(); }
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Code Sample 1: public SOCTradeOffer makeOffer(SOCPossiblePiece targetPiece) { D.ebugPrintln("***** MAKE OFFER *****"); if (targetPiece == null) { return null; } SOCTradeOffer offer = null; SOCResourceSet targetResources = null; switch(targetPiece.getType()) { case SOCPossiblePiece.CARD: targetResources = SOCGame.CARD_SET; break; case SOCPossiblePiece.ROAD: targetResources = SOCGame.ROAD_SET; break; case SOCPossiblePiece.SETTLEMENT: targetResources = SOCGame.SETTLEMENT_SET; break; case SOCPossiblePiece.CITY: targetResources = SOCGame.CITY_SET; break; } SOCResourceSet ourResources = ourPlayerData.getResources(); D.ebugPrintln("*** targetResources = " + targetResources); D.ebugPrintln("*** ourResources = " + ourResources); if (ourResources.contains(targetResources)) { return offer; } if (ourResources.getAmount(SOCResourceConstants.UNKNOWN) > 0) { D.ebugPrintln("AGG WE HAVE UNKNOWN RESOURCES !!!! %%%%%%%%%%%%%%%%%%%%%%%%%%%%"); return offer; } SOCTradeOffer batna = getOfferToBank(targetResources); D.ebugPrintln("*** BATNA = " + batna); SOCBuildingSpeedEstimate estimate = new SOCBuildingSpeedEstimate(ourPlayerData.getNumbers()); SOCResourceSet giveResourceSet = new SOCResourceSet(); SOCResourceSet getResourceSet = new SOCResourceSet(); int batnaBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, giveResourceSet, getResourceSet, estimate); D.ebugPrintln("*** batnaBuildingTime = " + batnaBuildingTime); if (batna != null) { batnaBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, batna.getGiveSet(), batna.getGetSet(), estimate); } D.ebugPrintln("*** batnaBuildingTime = " + batnaBuildingTime); int[] rollsPerResource = estimate.getRollsPerResource(); int[] neededRsrc = new int[5]; int[] notNeededRsrc = new int[5]; int neededRsrcCount = 0; int notNeededRsrcCount = 0; for (int rsrcType = SOCResourceConstants.CLAY; rsrcType <= SOCResourceConstants.WOOD; rsrcType++) { if (targetResources.getAmount(rsrcType) > 0) { neededRsrc[neededRsrcCount] = rsrcType; neededRsrcCount++; } else { notNeededRsrc[notNeededRsrcCount] = rsrcType; notNeededRsrcCount++; } } for (int j = neededRsrcCount - 1; j >= 0; j--) { for (int i = 0; i < j; i++) { if (rollsPerResource[neededRsrc[i]] > rollsPerResource[neededRsrc[i + 1]]) { int tmp = neededRsrc[i]; neededRsrc[i] = neededRsrc[i + 1]; neededRsrc[i + 1] = tmp; } } } if (D.ebugOn) { for (int i = 0; i < neededRsrcCount; i++) { D.ebugPrintln("NEEDED RSRC: " + neededRsrc[i] + " : " + rollsPerResource[neededRsrc[i]]); } } for (int j = notNeededRsrcCount - 1; j >= 0; j--) { for (int i = 0; i < j; i++) { if (rollsPerResource[notNeededRsrc[i]] > rollsPerResource[notNeededRsrc[i + 1]]) { int tmp = notNeededRsrc[i]; notNeededRsrc[i] = notNeededRsrc[i + 1]; notNeededRsrc[i + 1] = tmp; } } } if (D.ebugOn) { for (int i = 0; i < notNeededRsrcCount; i++) { D.ebugPrintln("NOT-NEEDED RSRC: " + notNeededRsrc[i] + " : " + rollsPerResource[notNeededRsrc[i]]); } } boolean[] someoneIsSellingResource = new boolean[SOCResourceConstants.MAXPLUSONE]; for (int rsrcType = SOCResourceConstants.CLAY; rsrcType <= SOCResourceConstants.WOOD; rsrcType++) { someoneIsSellingResource[rsrcType] = false; for (int pn = 0; pn < SOCGame.MAXPLAYERS; pn++) { if ((pn != ourPlayerData.getPlayerNumber()) && (isSellingResource[pn][rsrcType])) { someoneIsSellingResource[rsrcType] = true; D.ebugPrintln("*** player " + pn + " is selling " + rsrcType); break; } } } int getRsrcIdx = neededRsrcCount - 1; while ((getRsrcIdx >= 0) && ((ourResources.getAmount(neededRsrc[getRsrcIdx]) >= targetResources.getAmount(neededRsrc[getRsrcIdx])) || (!someoneIsSellingResource[neededRsrc[getRsrcIdx]]))) { getRsrcIdx--; } if (getRsrcIdx >= 0) { D.ebugPrintln("*** getRsrc = " + neededRsrc[getRsrcIdx]); getResourceSet.add(1, neededRsrc[getRsrcIdx]); D.ebugPrintln("*** offer should be null : offer = " + offer); int giveRsrcIdx = 0; while ((giveRsrcIdx < notNeededRsrcCount) && (offer == null)) { D.ebugPrintln("*** ourResources.getAmount(" + notNeededRsrc[giveRsrcIdx] + ") = " + ourResources.getAmount(notNeededRsrc[giveRsrcIdx])); if (ourResources.getAmount(notNeededRsrc[giveRsrcIdx]) > 0) { giveResourceSet.clear(); giveResourceSet.add(1, notNeededRsrc[giveRsrcIdx]); offer = makeOfferAux(giveResourceSet, getResourceSet, neededRsrc[getRsrcIdx]); D.ebugPrintln("*** offer = " + offer); int offerBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, giveResourceSet, getResourceSet, estimate); D.ebugPrintln("*** offerBuildingTime = " + offerBuildingTime); } giveRsrcIdx++; } D.ebugPrintln("*** ourResources = " + ourResources); if (offer == null) { int giveRsrcIdx1 = 0; while ((giveRsrcIdx1 < neededRsrcCount) && (offer == null)) { D.ebugPrintln("*** ourResources.getAmount(" + neededRsrc[giveRsrcIdx1] + ") = " + ourResources.getAmount(neededRsrc[giveRsrcIdx1])); D.ebugPrintln("*** targetResources.getAmount(" + neededRsrc[giveRsrcIdx1] + ") = " + targetResources.getAmount(neededRsrc[giveRsrcIdx1])); if ((ourResources.getAmount(neededRsrc[giveRsrcIdx1]) > targetResources.getAmount(neededRsrc[giveRsrcIdx1])) && (neededRsrc[giveRsrcIdx1] != neededRsrc[getRsrcIdx])) { giveResourceSet.clear(); giveResourceSet.add(1, neededRsrc[giveRsrcIdx1]); int offerBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, giveResourceSet, getResourceSet, estimate); if ((offerBuildingTime < batnaBuildingTime) || ((batna != null) && (offerBuildingTime == batnaBuildingTime) && (giveResourceSet.getTotal() < batna.getGiveSet().getTotal()))) { offer = makeOfferAux(giveResourceSet, getResourceSet, neededRsrc[getRsrcIdx]); D.ebugPrintln("*** offer = " + offer); D.ebugPrintln("*** offerBuildingTime = " + offerBuildingTime); } } giveRsrcIdx1++; } } D.ebugPrintln("*** ourResources = " + ourResources); SOCResourceSet leftovers = ourResources.copy(); leftovers.subtract(targetResources); D.ebugPrintln("*** leftovers = " + leftovers); if (offer == null) { int giveRsrcIdx1 = 0; int giveRsrcIdx2 = 0; while ((giveRsrcIdx1 < notNeededRsrcCount) && (offer == null)) { if (ourResources.getAmount(notNeededRsrc[giveRsrcIdx1]) > 0) { while ((giveRsrcIdx2 < notNeededRsrcCount) && (offer == null)) { giveResourceSet.clear(); giveResourceSet.add(1, notNeededRsrc[giveRsrcIdx1]); giveResourceSet.add(1, notNeededRsrc[giveRsrcIdx2]); if (ourResources.contains(giveResourceSet)) { int offerBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, giveResourceSet, getResourceSet, estimate); if ((offerBuildingTime < batnaBuildingTime) || ((batna != null) && (offerBuildingTime == batnaBuildingTime) && (giveResourceSet.getTotal() < batna.getGiveSet().getTotal()))) { offer = makeOfferAux(giveResourceSet, getResourceSet, neededRsrc[getRsrcIdx]); D.ebugPrintln("*** offer = " + offer); D.ebugPrintln("*** offerBuildingTime = " + offerBuildingTime); } } giveRsrcIdx2++; } giveRsrcIdx2 = 0; while ((giveRsrcIdx2 < neededRsrcCount) && (offer == null)) { if (neededRsrc[giveRsrcIdx2] != neededRsrc[getRsrcIdx]) { giveResourceSet.clear(); giveResourceSet.add(1, notNeededRsrc[giveRsrcIdx1]); giveResourceSet.add(1, neededRsrc[giveRsrcIdx2]); if (leftovers.contains(giveResourceSet)) { int offerBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, giveResourceSet, getResourceSet, estimate); if ((offerBuildingTime < batnaBuildingTime) || ((batna != null) && (offerBuildingTime == batnaBuildingTime) && (giveResourceSet.getTotal() < batna.getGiveSet().getTotal()))) { offer = makeOfferAux(giveResourceSet, getResourceSet, neededRsrc[getRsrcIdx]); D.ebugPrintln("*** offer = " + offer); D.ebugPrintln("*** offerBuildingTime = " + offerBuildingTime); } } } giveRsrcIdx2++; } } giveRsrcIdx1++; } giveRsrcIdx1 = 0; giveRsrcIdx2 = 0; while ((giveRsrcIdx1 < neededRsrcCount) && (offer == null)) { if ((leftovers.getAmount(neededRsrc[giveRsrcIdx1]) > 0) && (neededRsrc[giveRsrcIdx1] != neededRsrc[getRsrcIdx])) { while ((giveRsrcIdx2 < notNeededRsrcCount) && (offer == null)) { giveResourceSet.clear(); giveResourceSet.add(1, neededRsrc[giveRsrcIdx1]); giveResourceSet.add(1, notNeededRsrc[giveRsrcIdx2]); if (leftovers.contains(giveResourceSet)) { int offerBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, giveResourceSet, getResourceSet, estimate); if ((offerBuildingTime < batnaBuildingTime) || ((batna != null) && (offerBuildingTime == batnaBuildingTime) && (giveResourceSet.getTotal() < batna.getGiveSet().getTotal()))) { offer = makeOfferAux(giveResourceSet, getResourceSet, neededRsrc[getRsrcIdx]); D.ebugPrintln("*** offer = " + offer); D.ebugPrintln("*** offerBuildingTime = " + offerBuildingTime); } } giveRsrcIdx2++; } giveRsrcIdx2 = 0; while ((giveRsrcIdx2 < neededRsrcCount) && (offer == null)) { if (neededRsrc[giveRsrcIdx2] != neededRsrc[getRsrcIdx]) { giveResourceSet.clear(); giveResourceSet.add(1, neededRsrc[giveRsrcIdx1]); giveResourceSet.add(1, neededRsrc[giveRsrcIdx2]); if (leftovers.contains(giveResourceSet)) { int offerBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, giveResourceSet, getResourceSet, estimate); if ((offerBuildingTime < batnaBuildingTime) || ((batna != null) && (offerBuildingTime == batnaBuildingTime) && (giveResourceSet.getTotal() < batna.getGiveSet().getTotal()))) { offer = makeOfferAux(giveResourceSet, getResourceSet, neededRsrc[getRsrcIdx]); D.ebugPrintln("*** offer = " + offer); D.ebugPrintln("*** offerBuildingTime = " + offerBuildingTime); } } } giveRsrcIdx2++; } } giveRsrcIdx1++; } } } if (offer == null) { SOCResourceSet leftovers = ourResources.copy(); leftovers.subtract(targetResources); D.ebugPrintln("*** leftovers = " + leftovers); int getRsrcIdx2 = notNeededRsrcCount - 1; while ((getRsrcIdx2 >= 0) && (!someoneIsSellingResource[neededRsrc[getRsrcIdx2]])) { getRsrcIdx2--; } while ((getRsrcIdx2 >= 0) && (offer == null)) { getResourceSet.clear(); getResourceSet.add(1, notNeededRsrc[getRsrcIdx2]); leftovers.add(1, notNeededRsrc[getRsrcIdx2]); if (offer == null) { int giveRsrcIdx1 = 0; while ((giveRsrcIdx1 < notNeededRsrcCount) && (offer == null)) { if ((leftovers.getAmount(notNeededRsrc[giveRsrcIdx1]) > 0) && (notNeededRsrc[giveRsrcIdx1] != notNeededRsrc[getRsrcIdx2])) { leftovers.subtract(1, notNeededRsrc[giveRsrcIdx1]); if (getOfferToBank(targetResources, leftovers) != null) { giveResourceSet.clear(); giveResourceSet.add(1, notNeededRsrc[giveRsrcIdx1]); int offerBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, giveResourceSet, getResourceSet, estimate); if (offerBuildingTime < batnaBuildingTime) { offer = makeOfferAux(giveResourceSet, getResourceSet, notNeededRsrc[getRsrcIdx2]); D.ebugPrintln("*** offer = " + offer); D.ebugPrintln("*** offerBuildingTime = " + offerBuildingTime); } } leftovers.add(1, notNeededRsrc[giveRsrcIdx1]); } giveRsrcIdx1++; } } if (offer == null) { int giveRsrcIdx1 = 0; while ((giveRsrcIdx1 < neededRsrcCount) && (offer == null)) { if (leftovers.getAmount(neededRsrc[giveRsrcIdx1]) > 0) { leftovers.subtract(1, neededRsrc[giveRsrcIdx1]); if (getOfferToBank(targetResources, leftovers) != null) { giveResourceSet.clear(); giveResourceSet.add(1, neededRsrc[giveRsrcIdx1]); int offerBuildingTime = getETAToTargetResources(ourPlayerData, targetResources, giveResourceSet, getResourceSet, estimate); if (offerBuildingTime < batnaBuildingTime) { offer = makeOfferAux(giveResourceSet, getResourceSet, notNeededRsrc[getRsrcIdx2]); D.ebugPrintln("*** offer = " + offer); D.ebugPrintln("*** offerBuildingTime = " + offerBuildingTime); } } leftovers.add(1, neededRsrc[giveRsrcIdx1]); } giveRsrcIdx1++; } } leftovers.subtract(1, notNeededRsrc[getRsrcIdx2]); getRsrcIdx2--; } } return offer; } Code Sample 2: public static void copy(String from_name, String to_name) throws IOException { File from_file = new File(from_name); File to_file = new File(to_name); if (!from_file.exists()) abort("FileCopy: no such source file: " + from_name); if (!from_file.isFile()) abort("FileCopy: can't copy directory: " + from_name); if (!from_file.canRead()) abort("FileCopy: source file is unreadable: " + from_name); if (to_file.isDirectory()) to_file = new File(to_file, from_file.getName()); if (to_file.exists()) { if (!to_file.canWrite()) abort("FileCopy: destination file is unwriteable: " + to_name); System.out.print("Overwrite existing file " + to_name + "? (Y/N): "); System.out.flush(); BufferedReader in = new BufferedReader(new InputStreamReader(System.in)); String response = in.readLine(); if (!response.equals("Y") && !response.equals("y")) abort("FileCopy: existing file was not overwritten."); } else { String parent = to_file.getParent(); if (parent == null) parent = System.getProperty("user.dir"); File dir = new File(parent); if (!dir.exists()) abort("FileCopy: destination directory doesn't exist: " + parent); if (dir.isFile()) abort("FileCopy: destination is not a directory: " + parent); if (!dir.canWrite()) abort("FileCopy: destination directory is unwriteable: " + parent); } FileInputStream from = null; FileOutputStream to = null; try { from = new FileInputStream(from_file); to = new FileOutputStream(to_file); byte[] buffer = new byte[4096]; int bytes_read; while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read); } finally { if (from != null) try { from.close(); } catch (IOException e) { ; } if (to != null) try { to.close(); } catch (IOException e) { ; } } }
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Code Sample 1: public static void main(String[] args) throws IOException { File inputFile = new File("D:/farrago.txt"); File outputFile = new File("D:/outagain.txt"); FileReader in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } Code Sample 2: public static void compress(File srcFile, File destFile) throws IOException { InputStream input = null; OutputStream output = null; try { input = new BufferedInputStream(new FileInputStream(srcFile)); output = new GZIPOutputStream(new FileOutputStream(destFile)); IOUtils.copyLarge(input, output); } finally { IOUtils.closeQuietly(output); IOUtils.closeQuietly(input); } }
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Code Sample 1: public void write(HttpServletRequest req, HttpServletResponse res, Object bean) throws IntrospectionException, IllegalAccessException, NoSuchMethodException, InvocationTargetException, IOException { res.setContentType(contentType); final Object r; if (HttpRpcServer.HttpRpcOutput.class.isAssignableFrom(bean.getClass())) { HttpRpcServer.HttpRpcOutput output = (HttpRpcServer.HttpRpcOutput) bean; r = output.getResult(); } else r = bean; if (r != null) { final ServletOutputStream outputStream = res.getOutputStream(); if (File.class.isAssignableFrom(r.getClass())) { File file = (File) r; InputStream in = null; try { in = new FileInputStream(file); IOUtils.copy(in, outputStream); } finally { if (in != null) in.close(); } } else if (InputStream.class.isAssignableFrom(r.getClass())) { InputStream in = null; try { in = (InputStream) r; if (ByteArrayInputStream.class.isAssignableFrom(r.getClass())) res.addHeader("Content-Length", Integer.toString(in.available())); IOUtils.copy(in, outputStream); } finally { if (in != null) in.close(); } } outputStream.flush(); } } Code Sample 2: public static void main(String[] args) throws Exception { ClassPathXmlApplicationContext appContext = new ClassPathXmlApplicationContext("camel/exec-context.xml"); CamelContext context = appContext.getBean(CamelContext.class); Exchange exchange = new DefaultExchange(context); List<String> arg = new ArrayList<String>(); arg.add("/home/sumit/derby.log"); arg.add("helios:cameltesting/"); exchange.getIn().setHeader(ExecBinding.EXEC_COMMAND_ARGS, arg); Exchange res = context.createProducerTemplate().send("direct:input", exchange); ExecResult result = (ExecResult) res.getIn().getBody(); System.out.println(result.getExitValue()); System.out.println(result.getCommand()); if (result.getStderr() != null) { IOUtils.copy(result.getStderr(), new FileOutputStream(new File("/home/sumit/error.log"))); } if (result.getStdout() != null) { IOUtils.copy(result.getStdout(), new FileOutputStream(new File("/home/sumit/out.log"))); } appContext.close(); }
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Code Sample 1: public boolean setDeleteCliente(int IDcliente) { boolean delete = false; try { stm = conexion.prepareStatement("delete clientes where IDcliente='" + IDcliente + "'"); stm.executeUpdate(); conexion.commit(); delete = true; } catch (SQLException e) { System.out.println("Error en la eliminacion del registro en tabla clientes " + e.getMessage()); try { conexion.rollback(); } catch (SQLException ee) { System.out.println(ee.getMessage()); } return delete = false; } return delete; } Code Sample 2: public static void assertEquals(String xmlpath, Object actualObject) throws Exception { InputStreamReader isr; try { isr = new FileReader(xmlpath); } catch (FileNotFoundException e) { URL url = AssertHelper.class.getClassLoader().getResource(xmlpath); if (null != url) { try { isr = new InputStreamReader(url.openStream()); } catch (Exception e1) { throw new AssertionFailedError("Unable to find output xml : " + xmlpath); } } else { throw new AssertionFailedError("Could not read output xml : " + xmlpath); } } DOMParser parser = new DOMParser(); parser.parse(new InputSource(isr)); Document document = parser.getDocument(); try { assertEqual(document.getDocumentElement(), actualObject); } catch (AssertionFailedError e) { String message = null; if (null != e.getCause()) { message = e.getCause().getMessage(); } else { message = e.getMessage(); } StringBuffer sbf = new StringBuffer(message + " \n " + xmlpath); Iterator iter = nodestack.iterator(); while (iter.hasNext()) { sbf.append(" -> " + ((Object[]) iter.next())[0]); iter.remove(); } AssertionFailedError a = new AssertionFailedError(sbf.toString()); a.setStackTrace(e.getStackTrace()); throw a; } catch (Exception e) { String message = null; if (null != e.getCause()) { message = e.getCause().getMessage(); } else { message = e.getMessage(); } StringBuffer sbf = new StringBuffer(message + " \n " + xmlpath); Iterator iter = nodestack.iterator(); while (iter.hasNext()) { sbf.append(" -> " + ((Object[]) iter.next())[0]); iter.remove(); } Exception ex = new Exception(sbf.toString()); ex.setStackTrace(e.getStackTrace()); throw ex; } }
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Code Sample 1: public void saveProjectFile(File aFile) { SimpleDateFormat sdf = new SimpleDateFormat("yyMMddHHmmss"); File destDir = new File(theProjectsDirectory, sdf.format(Calendar.getInstance().getTime())); if (destDir.mkdirs()) { File outFile = new File(destDir, "project.xml"); try { FileChannel sourceChannel = new FileInputStream(aFile).getChannel(); FileChannel destinationChannel = new FileOutputStream(outFile).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } catch (IOException e) { e.printStackTrace(); } finally { aFile.delete(); } } } Code Sample 2: public static void main(String[] args) { try { int encodeFlag = 0; if (args[0].equals("-e")) { encodeFlag = Base64.ENCODE; } else if (args[0].equals("-d")) { encodeFlag = Base64.DECODE; } String infile = args[1]; String outfile = args[2]; File fin = new File(infile); FileInputStream fis = new FileInputStream(fin); BufferedInputStream bis = new BufferedInputStream(fis); Base64.InputStream b64in = new Base64.InputStream(bis, encodeFlag | Base64.DO_BREAK_LINES); File fout = new File(outfile); FileOutputStream fos = new FileOutputStream(fout); BufferedOutputStream bos = new BufferedOutputStream(fos); byte[] buff = new byte[1024]; int read = -1; while ((read = b64in.read(buff)) >= 0) { bos.write(buff, 0, read); } bos.close(); b64in.close(); } catch (Exception e) { e.printStackTrace(); } }
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Code Sample 1: public static void main(String arg[]) { try { String readFile = arg[0]; String writeFile = arg[1]; java.io.FileInputStream ss = new java.io.FileInputStream(readFile); ManagedMemoryDataSource ms = new ManagedMemoryDataSource(ss, 1024 * 1024, "foo/data", true); javax.activation.DataHandler dh = new javax.activation.DataHandler(ms); java.io.InputStream is = dh.getInputStream(); java.io.FileOutputStream fo = new java.io.FileOutputStream(writeFile); byte[] buf = new byte[512]; int read = 0; do { read = is.read(buf); if (read > 0) { fo.write(buf, 0, read); } } while (read > -1); fo.close(); is.close(); } catch (java.lang.Exception e) { log.error(Messages.getMessage("exception00"), e); } } Code Sample 2: public static void main(String[] args) throws Exception { DES des = new DES(); StreamBlockReader reader = new StreamBlockReader(new FileInputStream("D:\\test1.txt")); StreamBlockWriter writer = new StreamBlockWriter(new FileOutputStream("D:\\test2.txt")); SingleKey key = new SingleKey(new Block(64), ""); key = new SingleKey(new Block("1111111100000000111111110000000011111111000000001111111100000000"), ""); Mode mode = new ECBDESMode(des); des.decrypt(reader, writer, key, mode); }
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Code Sample 1: @Override public void run() { long timeout = 10 * 1000L; long start = (new Date()).getTime(); try { InputStream is = socket.getInputStream(); boolean available = false; while (!available && !socket.isClosed()) { try { if (is.available() != 0) { available = true; } else { Thread.sleep(100); } } catch (Exception e) { LOG.error("Error checking socket", e); } long curr = (new Date()).getTime(); if ((curr - start) >= timeout) { break; } } if (socket.isClosed()) { } else { tmpFile = File.createTempFile("ftp", "dat", new File("./tmp")); BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(tmpFile)); IOUtils.copy(is, bos); bos.flush(); bos.close(); } String msg = FtpResponse.ReadComplete.asString() + ClientCommand.SP + "Read Complete" + ClientCommand.CRLF; List<String> list = new ArrayList<String>(); list.add(msg); ClientResponse response = new ClientResponse(list); ftpClient.notifyListeners(response); } catch (Exception e) { LOG.error("Error reading server response", e); } } Code Sample 2: @Test public void testStandardTee() throws Exception { final byte[] test = "test".getBytes(); final InputStream source = new ByteArrayInputStream(test); final ByteArrayOutputStream destination1 = new ByteArrayOutputStream(); final ByteArrayOutputStream destination2 = new ByteArrayOutputStream(); final TeeOutputStream tee = new TeeOutputStream(destination1, destination2); org.apache.commons.io.IOUtils.copy(source, tee); tee.close(); assertArrayEquals("the two arrays are equals", test, destination1.toByteArray()); assertArrayEquals("the two arrays are equals", test, destination2.toByteArray()); assertEquals("byte count", test.length, tee.getSize()); }
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Code Sample 1: public static String md5EncodeString(String s) throws UnsupportedEncodingException, NoSuchAlgorithmException { if (s == null) return null; if (StringUtils.isBlank(s)) return ""; MessageDigest algorithm = MessageDigest.getInstance("MD5"); algorithm.reset(); algorithm.update(s.getBytes("UTF-8")); byte messageDigest[] = algorithm.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < messageDigest.length; i++) { String hex = Integer.toHexString(0xFF & messageDigest[i]); if (hex.length() == 1) { hexString.append('0'); } hexString.append(hex); } return hexString.toString(); } Code Sample 2: private void unzipData(ZipFile zipfile, ZipEntry entry) { if (entry.getName().equals("backUpExternalInfo.out")) { File outputFile = new File("temp", entry.getName()); if (!outputFile.getParentFile().exists()) { outputFile.getParentFile().mkdirs(); } try { BufferedInputStream inputStream = new BufferedInputStream(zipfile.getInputStream(entry)); BufferedOutputStream outputStream = new BufferedOutputStream(new FileOutputStream(outputFile)); IOUtils.copy(inputStream, outputStream); outputStream.close(); inputStream.close(); } catch (IOException e) { throw new BackupException(e.getMessage()); } } }
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Code Sample 1: public static String[] retrieveFasta(String id) throws Exception { URL url = new URL("http://www.uniprot.org/uniprot/" + id + ".fasta"); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String header = reader.readLine(); StringBuffer seq = new StringBuffer(); String line = ""; while ((line = reader.readLine()) != null) { seq.append(line); } reader.close(); String[] first = header.split("OS="); return new String[] { id, first[0].split("\\s")[1], first[1].split("GN=")[0], seq.toString() }; } Code Sample 2: @Override protected Object doInBackground() throws Exception { ArchiveInputStream bufIn = null; FileOutputStream fileOut = null; try { bufIn = DecompressionWorker.guessStream(fileToExtract); ArchiveEntry curZip = null; int progress = 0; while ((curZip = bufIn.getNextEntry()) != null) { if (!curZip.isDirectory()) { byte[] content = new byte[(int) curZip.getSize()]; fileOut = new FileOutputStream(extractionFile.getAbsolutePath() + File.separator + curZip.getName()); for (int i = 0; i < content.length; i++) { fileOut.write(content[i]); } publish(new Integer(progress)); progress++; } } } finally { if (bufIn != null) { bufIn.close(); } } return null; }
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Code Sample 1: private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); } Code Sample 2: protected byte[] readGZippedBytes(TupleInput in) { final boolean is_compressed = in.readBoolean(); byte array[] = readBytes(in); if (array == null) return null; if (!is_compressed) { return array; } try { ByteArrayInputStream bais = new ByteArrayInputStream(array); GZIPInputStream gzin = new GZIPInputStream(bais); ByteArrayOutputStream baos = new ByteArrayOutputStream(array.length); IOUtils.copyTo(gzin, baos); gzin.close(); bais.close(); return baos.toByteArray(); } catch (IOException err) { throw new RuntimeException(err); } }
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Code Sample 1: private void generateArchetype(final IProject project, final IDataModel model, final IProgressMonitor monitor, final boolean offline) throws CoreException, InterruptedException, IOException { if (getArchetypeArtifactId(model) != null) { final Properties properties = new Properties(); properties.put("archetypeArtifactId", getArchetypeArtifactId(model)); properties.put("archetypeGroupId", getArchetypeGroupId(model)); properties.put("archetypeVersion", getArchetypeVersion(model)); String artifact = (String) model.getProperty(IMavenFacetInstallDataModelProperties.PROJECT_ARTIFACT_ID); if (artifact == null || artifact.trim().length() == 0) { artifact = project.getName(); } properties.put("artifactId", artifact); String group = (String) model.getProperty(IMavenFacetInstallDataModelProperties.PROJECT_GROUP_ID); if (group == null || group.trim().length() == 0) { group = project.getName(); } properties.put("groupId", group); properties.put("version", model.getProperty(IMavenFacetInstallDataModelProperties.PROJECT_VERSION)); final StringBuffer sb = new StringBuffer(System.getProperty("user.home")).append(File.separator); sb.append(".m2").append(File.separator).append("repository"); final String local = sb.toString(); Logger.getLog().debug("Local Maven2 repository :: " + local); properties.put("localRepository", local); if (!offline) { final String sbRepos = getRepositories(); properties.put("remoteRepositories", sbRepos); } final ILaunchManager launchManager = DebugPlugin.getDefault().getLaunchManager(); final ILaunchConfigurationType launchConfigurationType = launchManager.getLaunchConfigurationType(LAUNCH_CONFIGURATION_TYPE_ID); final ILaunchConfigurationWorkingCopy workingCopy = launchConfigurationType.newInstance(null, "Creating project using Apache Maven archetype"); File archetypePomDirectory = getDefaultArchetypePomDirectory(); try { String dfPom = getPomFile(group, artifact); ByteArrayInputStream bais = new ByteArrayInputStream(dfPom.getBytes()); File f = new File(archetypePomDirectory, "pom.xml"); OutputStream fous = null; try { fous = new FileOutputStream(f); IOUtils.copy(bais, fous); } finally { try { if (fous != null) { fous.close(); } if (bais != null) { bais.close(); } } catch (IOException e) { } } if (SiteManager.isHttpProxyEnable()) { addProxySettings(properties); } workingCopy.setAttribute(ATTR_POM_DIR, archetypePomDirectory.getAbsolutePath()); workingCopy.setAttribute(ATTR_PROPERTIES, convertPropertiesToList(properties)); String goalName = "archetype:create"; if (offline) { goalName = new StringBuffer(goalName).append(" -o").toString(); } goalName = updateGoal(goalName); workingCopy.setAttribute(ATTR_GOALS, goalName); final long timeout = org.maven.ide.eclipse.ext.Maven2Plugin.getTimeout(); TimeoutLaunchConfiguration.launchWithTimeout(monitor, workingCopy, project, timeout); monitor.setTaskName("Moving to workspace"); FileUtils.copyDirectoryStructure(new File(archetypePomDirectory, project.getName()), ArchetypePOMHelper.getProjectDirectory(project)); monitor.worked(1); performMavenInstall(monitor, project, offline); project.refreshLocal(2, monitor); } catch (final IOException ioe) { Logger.log(Logger.ERROR, "I/O exception. One probably solution is absence " + "of mvn2 archetypes or not the correct version, " + "in your local repository. Please, check existence " + "of this archetype."); Logger.getLog().error("I/O Exception arised creating mvn2 archetype", ioe); throw ioe; } finally { FileUtils.deleteDirectory(archetypePomDirectory); Logger.log(Logger.INFO, "Invoked removing of archetype POM directory"); } } monitor.worked(1); } Code Sample 2: public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } }
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Code Sample 1: public static String hashString(String sPassword) { if (sPassword == null || sPassword.equals("")) { return "empty:"; } else { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(sPassword.getBytes("UTF-8")); byte[] res = md.digest(); return "sha1:" + byte2hex(res); } catch (NoSuchAlgorithmException e) { return "plain:" + sPassword; } catch (UnsupportedEncodingException e) { return "plain:" + sPassword; } } } Code Sample 2: public static String getWebpage(String url) { String content = ""; if (!url.trim().toLowerCase().startsWith("http://")) { url = "http://" + url; } try { BufferedReader reader = new BufferedReader(new InputStreamReader(new URL(url).openStream())); String line; while ((line = reader.readLine()) != null) { content += line + "\n"; } reader.close(); } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } catch (Exception e2) { e2.printStackTrace(); } return content; }
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Code Sample 1: private byte[] _generate() throws NoSuchAlgorithmException { if (host == null) { try { seed = InetAddress.getLocalHost().toString(); } catch (UnknownHostException e) { seed = "localhost/127.0.0.1"; } catch (SecurityException e) { seed = "localhost/127.0.0.1"; } host = seed; } else { seed = host; } seed = seed + new Date().toString(); seed = seed + Long.toString(rnd.nextLong()); md = MessageDigest.getInstance(algorithm); md.update(seed.getBytes()); return md.digest(); } Code Sample 2: public static String hash(String password) { try { MessageDigest digest = MessageDigest.getInstance(digestAlgorithm); digest.update(password.getBytes(charset)); byte[] rawHash = digest.digest(); return new String(Hex.encodeHex(rawHash)); } catch (Exception e) { throw new RuntimeException(e); } }
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Code Sample 1: public static String encryptMd5(String plaintext) { String hashtext = ""; try { MessageDigest m; m = MessageDigest.getInstance("MD5"); m.reset(); m.update(plaintext.getBytes()); byte[] digest = m.digest(); BigInteger bigInt = new BigInteger(1, digest); hashtext = bigInt.toString(16); while (hashtext.length() < 32) { hashtext = "0" + hashtext; } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return hashtext; } Code Sample 2: public String md5(Value request) throws FaultException { MessageDigest md = null; try { md = MessageDigest.getInstance("MD5"); md.update(request.strValue().getBytes("UTF8")); } catch (UnsupportedEncodingException e) { throw new FaultException("UnsupportedOperation", e); } catch (NoSuchAlgorithmException e) { throw new FaultException("UnsupportedOperation", e); } int radix; if ((radix = request.getFirstChild("radix").intValue()) < 2) { radix = 16; } return new BigInteger(1, md.digest()).toString(radix); }
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Code Sample 1: public void generateReport(AllTestsResult atr, AllConvsResult acr, File nwbConvGraph) { ConvResult[] convs = acr.getConvResults(); BufferedReader reader = null; BufferedWriter writer = null; try { reader = new BufferedReader(new FileReader(nwbConvGraph)); writer = new BufferedWriter(new FileWriter(this.annotatedNWBGraph)); String line = null; while ((line = reader.readLine()) != null) { line = line.trim(); if (line.startsWith("id*int")) { writer.write(line + " isTrusted*int chanceCorrect*float isConverter*int \r\n"); } else if (line.matches(NODE_LINE)) { String[] parts = line.split(" "); String rawConvName = parts[1]; String convName = rawConvName.replaceAll("\"", ""); boolean wroteAttributes = false; for (int ii = 0; ii < convs.length; ii++) { ConvResult cr = convs[ii]; if (cr.getShortName().equals(convName)) { int trusted; if (cr.isTrusted()) { trusted = 1; } else { trusted = 0; } writer.write(line + " " + trusted + " " + FormatUtil.formatToPercent(cr.getChanceCorrect()) + " 1 " + "\r\n"); wroteAttributes = true; break; } } if (!wroteAttributes) { writer.write(line + " 1 100.0 0" + "\r\n"); } } else { writer.write(line + "\r\n"); } } } catch (IOException e) { this.log.log(LogService.LOG_ERROR, "Unable to generate Graph Report.", e); try { if (reader != null) reader.close(); } catch (IOException e2) { this.log.log(LogService.LOG_ERROR, "Unable to close graph report stream", e); } } finally { try { if (reader != null) { reader.close(); } if (writer != null) { writer.close(); } } catch (IOException e) { this.log.log(LogService.LOG_ERROR, "Unable to close either graph report reader or " + "writer.", e); e.printStackTrace(); } } } Code Sample 2: private void copyFile(File sourcefile, File targetfile) { BufferedInputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream(new FileInputStream(sourcefile)); out = new BufferedOutputStream(new FileOutputStream(targetfile)); byte[] buffer = new byte[4096]; int bytesread = 0; while ((bytesread = in.read(buffer)) >= 0) { out.write(buffer, 0, bytesread); } } catch (IOException e) { e.printStackTrace(); } finally { try { if (in != null) { in.close(); } if (out != null) { out.close(); } } catch (IOException e) { e.printStackTrace(); } } }
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Code Sample 1: public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } Code Sample 2: private void copy(File src, File dest, String name) { File srcFile = new File(src, name); File destFile = new File(dest, name); if (destFile.exists()) { if (destFile.lastModified() == srcFile.lastModified()) return; destFile.delete(); } FileChannel in = null; FileChannel out = null; try { in = new FileInputStream(srcFile).getChannel(); out = new FileOutputStream(destFile).getChannel(); in.transferTo(0, in.size(), out); } catch (IOException e) { e.printStackTrace(); } finally { try { if (in != null) in.close(); } catch (IOException e) { } try { if (out != null) out.close(); } catch (IOException e) { } } destFile.setLastModified(srcFile.lastModified()); }
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Code Sample 1: public void updateDb(int scriptNumber) throws SQLException, IOException { String pathName = updatesPackage.replace(".", "/"); InputStream in = getClass().getClassLoader().getResourceAsStream(pathName + "/" + scriptNumber + ".sql"); ByteArrayOutputStream out = new ByteArrayOutputStream(); IOUtils.copy(in, out); String script = out.toString("UTF-8"); String[] statements = script.split(";"); for (String statement : statements) { getJdbcTemplate().execute(statement); } } Code Sample 2: public File extractID3v2TagDataIntoFile(File outputFile) throws TagNotFoundException, IOException { int startByte = (int) ((MP3AudioHeader) audioHeader).getMp3StartByte(); if (startByte >= 0) { FileInputStream fis = new FileInputStream(file); FileChannel fc = fis.getChannel(); ByteBuffer bb = ByteBuffer.allocate(startByte); fc.read(bb); FileOutputStream out = new FileOutputStream(outputFile); out.write(bb.array()); out.close(); fc.close(); fis.close(); return outputFile; } throw new TagNotFoundException("There is no ID3v2Tag data in this file"); }
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Code Sample 1: private static String completeGet(String encodedURLStr) throws IOException { URL url = new URL(encodedURLStr); HttpURLConnection connection = initConnection(url); String result = getReply(url.openStream()); connection.disconnect(); return result; } Code Sample 2: public String getpage(String leurl) throws Exception { int data; StringBuffer lapage = new StringBuffer(); URL myurl = new URL(leurl); URLConnection conn = myurl.openConnection(); conn.connect(); if (!Pattern.matches("HTTP/... 2.. .*", conn.getHeaderField(0).toString())) { System.out.println(conn.getHeaderField(0).toString()); return lapage.toString(); } InputStream in = conn.getInputStream(); for (data = in.read(); data != -1; data = in.read()) lapage.append((char) data); return lapage.toString(); }
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Code Sample 1: @HttpAction(name = "map.saveOrUpdate", method = { HttpAction.Method.post }, responseType = "text/plain") @HttpAuthentication(method = { HttpAuthentication.Method.WSSE }) public String saveOrUpdate(FileItem file, User user, MapOriginal map) throws HttpRpcException { File tmpFile; GenericDAO<MapOriginal> mapDao = DAOFactory.createDAO(MapOriginal.class); try { assert (file != null); String jobid = null; if (file.getContentType().startsWith("image/")) { tmpFile = File.createTempFile("gmap", "img"); OutputStream out = new FileOutputStream(tmpFile); IOUtils.copy(file.getInputStream(), out); out.flush(); out.close(); map.setState(MapOriginal.MapState.UPLOAD); map.setUser(user); map.setMapPath(tmpFile.getPath()); map.setThumbnailUrl("/map/inproc.gif"); map.setMimeType(file.getContentType()); mapDao.saveOrUpdate(map); jobid = PoolFactory.getClientPool().put(map, TaskState.STATE_MO_FINISH, MapOverrideStrategy.class); } return jobid; } catch (IOException e) { logger.error(e); throw ERROR_INTERNAL; } catch (DAOException e) { logger.error(e); throw ERROR_INTERNAL; } } Code Sample 2: public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } }
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Code Sample 1: public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } } Code Sample 2: public void testAllowClosingInputStreamTwice() throws IOException { OutputStream outputStream = fileSystem.createOutputStream(_("hello"), OutputMode.OVERWRITE); outputStream.write(new byte[] { 1, 2, 3 }); outputStream.close(); InputStream inputStream = fileSystem.createInputStream(_("hello")); ByteArrayOutputStream buffer = new ByteArrayOutputStream(); IOUtils.copy(inputStream, buffer); inputStream.close(); inputStream.close(); }
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Code Sample 1: private static String hashWithDigest(String in, String digest) { try { MessageDigest Digester = MessageDigest.getInstance(digest); Digester.update(in.getBytes("UTF-8"), 0, in.length()); byte[] sha1Hash = Digester.digest(); return toSimpleHexString(sha1Hash); } catch (NoSuchAlgorithmException ex) { throw new RuntimeException("Hashing the password failed", ex); } catch (UnsupportedEncodingException e) { throw new RuntimeException("Encoding the string failed", e); } } Code Sample 2: public static String md5(String value) { try { MessageDigest messageDigest = MessageDigest.getInstance("MD5"); messageDigest.update(value.getBytes()); return bytesToString(messageDigest.digest()); } catch (Exception ex) { Tools.logException(Tools.class, ex, value); } return value; }
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Code Sample 1: public static boolean copy(File source, File dest) { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { e.printStackTrace(); return false; } return true; } Code Sample 2: private DataFileType[] getDataFiles(Collection<ContentToSend> contentsToSend) { DataFileType[] files = new DataFileType[contentsToSend.size()]; int fileIndex = 0; for (ContentToSend contentToSend : contentsToSend) { DataFileType dataFile = DataFileType.Factory.newInstance(); dataFile.setFilename(contentToSend.getFileName()); dataFile.setId("D" + fileIndex); dataFile.setMimeType(contentToSend.getMimeType()); dataFile.setContentType(DataFileType.ContentType.EMBEDDED_BASE_64); final StringWriter stringWriter = new StringWriter(); final OutputStream encodeStream = Base64.newEncoder(stringWriter, 0, null); final InputStream is = contentToSend.getInputStream(); try { long sizeCopied = IOUtils.copyLarge(is, encodeStream); dataFile.setSize(BigDecimal.valueOf(sizeCopied)); } catch (IOException e) { throw new RuntimeException("Failed to get input to the file to be sent", e); } finally { IOUtils.closeQuietly(encodeStream); IOUtils.closeQuietly(is); } dataFile.setStringValue(stringWriter.toString()); files[fileIndex++] = dataFile; } return files; }
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Code Sample 1: public static void decompressFile(File f) throws IOException { File target = new File(f.toString().substring(0, f.toString().length() - 3)); System.out.print("Decompressing: " + f.getName() + ".. "); long initialSize = f.length(); GZIPInputStream in = new GZIPInputStream(new FileInputStream(f)); FileOutputStream fos = new FileOutputStream(target); byte[] buf = new byte[1024]; int read; while ((read = in.read(buf)) != -1) { fos.write(buf, 0, read); } System.out.println("Done."); fos.close(); in.close(); long endSize = target.length(); System.out.println("Initial size: " + initialSize + "; Decompressed size: " + endSize); } Code Sample 2: @Override public final boolean delete() throws RecordException { if (frozen) { throw new RecordException("The object is frozen."); } Connection conn = ConnectionManager.getConnection(); LoggableStatement pStat = null; Class<? extends Record> actualClass = this.getClass(); StatementBuilder builder = null; try { builder = new StatementBuilder("delete from " + TableNameResolver.getTableName(actualClass) + " where id = :id"); Field f = FieldHandler.findField(this.getClass(), "id"); builder.set("id", FieldHandler.getValue(f, this)); pStat = builder.getPreparedStatement(conn); log.log(pStat.getQueryString()); int i = pStat.executeUpdate(); return i == 1; } catch (Exception e) { try { conn.rollback(); } catch (SQLException e1) { throw new RecordException("Error executing rollback"); } throw new RecordException(e); } finally { try { if (pStat != null) { pStat.close(); } conn.commit(); conn.close(); } catch (SQLException e) { throw new RecordException("Error closing connection"); } } }
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Code Sample 1: private boolean doStudentCreditUpdate(Double dblCAmnt, String stuID) throws Exception { Connection conn = null; Statement stmt = null; ResultSet rs = null; Boolean blOk = false; String strMessage = ""; try { conn = dbMan.getPOSConnection(); conn.setAutoCommit(false); stmt = conn.createStatement(); String host = getHostName(); String stuId = student.getStudentNumber(); String building = settings.get(DBSettings.MAIN_BUILDING); String cashier = dbMan.getPOSUser(); if (hasStudentCredit()) { stmt = conn.createStatement(); if (stmt.executeUpdate("UPDATE " + strPOSPrefix + "studentcredit set credit_amount = credit_amount + " + round2Places(dblCAmnt) + " WHERE credit_active = '1' and credit_studentid = '" + stuId + "'") == 1) { stmt.close(); stmt = conn.createStatement(); if (stmt.executeUpdate("UPDATE " + strPOSPrefix + "studentcredit set credit_lastused = NOW() where credit_active = '1' and credit_studentid = '" + stuId + "'") == 1) { stmt.close(); stmt = conn.createStatement(); if (stmt.executeUpdate("INSERT into " + strPOSPrefix + "studentcredit_log ( scl_studentid, scl_action, scl_datetime ) values( '" + stuId + "', '" + round2Places(dblCAmnt) + "', NOW() )") == 1) { stmt.close(); blOk = true; } else { strMessage = "Unable to update student credit log."; blOk = false; } } else { strMessage = "Unable to update student credit account."; blOk = false; } } else { strMessage = "Unable to update student credit account."; blOk = false; } } else { stmt = conn.createStatement(); if (stmt.executeUpdate("insert into " + strPOSPrefix + "studentcredit (credit_amount,credit_active,credit_studentid,credit_lastused) values('" + round2Places(dblCAmnt) + "','1','" + stuId + "', NOW())") == 1) { stmt.close(); stmt = conn.createStatement(); if (stmt.executeUpdate("insert into " + strPOSPrefix + "studentcredit_log ( scl_studentid, scl_action, scl_datetime ) values( '" + stuId + "', '" + round2Places(dblCAmnt) + "', NOW() )") == 1) { stmt.close(); blOk = true; } else { strMessage = "Unable to update student credit log."; blOk = false; } } else { strMessage = "Unable to create new student credit account."; blOk = false; } } if (blOk) { stmt = conn.createStatement(); if (stmt.executeUpdate("insert into " + strPOSPrefix + "creditTrans ( ctStudentNumber, ctCreditAction, ctBuilding, ctRegister, ctUser, ctDateTime ) values( '" + stuId + "', '" + round2Places(dblCAmnt) + "', '" + building + "', '" + host + "', '" + cashier + "', NOW() )") == 1) { stmt.close(); blOk = true; } else blOk = false; } if (blOk) { conn.commit(); return true; } else { conn.rollback(); throw new Exception("Error detected during credit adjustment! " + strMessage); } } catch (Exception exp) { try { conn.rollback(); } catch (SQLException sqlEx2) { System.err.println("Rollback failed: " + sqlEx2.getMessage()); return false; } finally { if (rs != null) { try { rs.close(); } catch (SQLException sqlEx) { rs = null; } if (stmt != null) { try { stmt.close(); } catch (SQLException sqlEx) { stmt = null; } catch (Exception e) { System.err.println("Exception: " + e.getMessage()); System.err.println(e); } } } } exp.printStackTrace(); throw new Exception("Error detected during credit adjustment: " + exp.getMessage()); } } Code Sample 2: private static BundleInfo[] getBundleInfoArray(String location) throws IOException { URL url = new URL(location + BUNDLE_LIST_FILE); BufferedReader br = null; List<BundleInfo> list = new ArrayList<BundleInfo>(); try { br = new BufferedReader(new InputStreamReader(url.openStream())); while (true) { String line = br.readLine(); if (line == null) { break; } int pos1 = line.indexOf('='); if (pos1 < 0) { continue; } BundleInfo info = new BundleInfo(); info.bundleSymbolicName = line.substring(0, pos1); info.location = line.substring(pos1 + 1); list.add(info); } if (!setBundleInfoName(location + BUNDLE_NAME_LIST_FILE + "_" + Locale.getDefault().getLanguage(), list)) { setBundleInfoName(location + BUNDLE_NAME_LIST_FILE, list); } return list.toArray(BUNDLE_INFO_EMPTY_ARRAY); } finally { if (br != null) { br.close(); } } }
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Code Sample 1: public static void copy(File source, File dest) throws IOException { FileChannel in = null, out = null; try { in = new FileInputStream(source).getChannel(); out = new FileOutputStream(dest).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) in.close(); if (out != null) out.close(); } } Code Sample 2: public void save(InputStream is) throws IOException { File dest = Config.getDataFile(getInternalDate(), getPhysMessageID()); OutputStream os = null; try { os = new FileOutputStream(dest); IOUtils.copyLarge(is, os); } finally { IOUtils.closeQuietly(os); IOUtils.closeQuietly(is); } }
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Code Sample 1: public File getFile(String file) { DirProperties dp; List files = new ArrayList(); for (int i = 0; i < locs.size(); i++) { dp = (DirProperties) locs.get(i); if (dp.isReadable()) { File g = new File(dp.getLocation() + slash() + file); if (g.exists()) files.add(g); } } if (files.size() == 0) { throw new UnsupportedOperationException("at least one DirProperty should get 'read=true'"); } else if (files.size() == 1) { return (File) files.get(0); } else { File fromFile = (File) files.get(files.size() - 2); File toFile = (File) files.get(files.size() - 1); byte reading[] = new byte[2024]; try { FileInputStream stream = new FileInputStream(fromFile); FileOutputStream outStr = new FileOutputStream(toFile); while (stream.read(reading) != -1) { outStr.write(reading); } } catch (FileNotFoundException ex) { getLogger().severe("FileNotFound: while copying from " + fromFile + " to " + toFile); } catch (IOException ex) { getLogger().severe("IOException: while copying from " + fromFile + " to " + toFile); } return toFile; } } Code Sample 2: @Override public String getPath() { InputStream in = null; OutputStream out = null; File file = null; try { file = File.createTempFile("java-storage_" + RandomStringUtils.randomAlphanumeric(32), ".tmp"); file.deleteOnExit(); out = new FileOutputStream(file); in = openStream(); IOUtils.copy(in, out); } catch (IOException e) { throw new RuntimeException(); } finally { IOUtils.closeQuietly(in); IOUtils.closeQuietly(out); } if (file != null && file.exists()) { return file.getPath(); } return null; }
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Code Sample 1: public boolean renameTo(Folder f) throws MessagingException, StoreClosedException, NullPointerException { String[] aLabels = new String[] { "en", "es", "fr", "de", "it", "pt", "ca", "ja", "cn", "tw", "fi", "ru", "pl", "nl", "xx" }; PreparedStatement oUpdt = null; if (!((DBStore) getStore()).isConnected()) throw new StoreClosedException(getStore(), "Store is not connected"); if (oCatg.isNull(DB.gu_category)) throw new NullPointerException("Folder is closed"); try { oUpdt = getConnection().prepareStatement("DELETE FROM " + DB.k_cat_labels + " WHERE " + DB.gu_category + "=?"); oUpdt.setString(1, oCatg.getString(DB.gu_category)); oUpdt.executeUpdate(); oUpdt.close(); oUpdt.getConnection().prepareStatement("INSERT INTO " + DB.k_cat_labels + " (" + DB.gu_category + "," + DB.id_language + "," + DB.tr_category + "," + DB.url_category + ") VALUES (?,?,?,NULL)"); oUpdt.setString(1, oCatg.getString(DB.gu_category)); for (int l = 0; l < aLabels.length; l++) { oUpdt.setString(2, aLabels[l]); oUpdt.setString(3, f.getName().substring(0, 1).toUpperCase() + f.getName().substring(1).toLowerCase()); oUpdt.executeUpdate(); } oUpdt.close(); oUpdt = null; getConnection().commit(); } catch (SQLException sqle) { try { if (null != oUpdt) oUpdt.close(); } catch (SQLException ignore) { } try { getConnection().rollback(); } catch (SQLException ignore) { } throw new MessagingException(sqle.getMessage(), sqle); } return true; } Code Sample 2: public int extract() throws Exception { int count = 0; if (VERBOSE) System.out.println("IAAE:Extractr.extract: getting ready to extract " + getArtDir().toString()); ITCFileFilter iff = new ITCFileFilter(); RecursiveFileIterator rfi = new RecursiveFileIterator(getArtDir(), iff); FileTypeDeterminer ftd = new FileTypeDeterminer(); File artFile = null; File targetFile = null; broadcastStart(); while (rfi.hasMoreElements()) { artFile = (File) rfi.nextElement(); targetFile = getTargetFile(artFile); if (VERBOSE) System.out.println("IAAE:Extractr.extract: working ont " + artFile.toString()); BufferedInputStream in = null; BufferedOutputStream out = null; try { in = new BufferedInputStream((new FileInputStream(artFile))); out = new BufferedOutputStream((new FileOutputStream(targetFile))); byte[] buffer = new byte[10240]; int read = 0; int total = 0; read = in.read(buffer); while (read != -1) { if ((total <= 491) && (read > 491)) { out.write(buffer, 492, (read - 492)); } else if ((total <= 491) && (read <= 491)) { } else { out.write(buffer, 0, read); } total = total + read; read = in.read(buffer); } } catch (Exception e) { e.printStackTrace(); broadcastFail(); } finally { in.close(); out.close(); } broadcastSuccess(); count++; } broadcastDone(); return count; }
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Code Sample 1: private void processAlignmentsFromAlignmentSource(String name, Alignment reference, String alignmentSource) throws AlignmentParserException, IllegalArgumentException, KADMOSCMDException, IOException { if (alignmentSource == null) throw new IllegalArgumentException("alignmentSource is null"); URL url; String st; BufferedReader reader; Alignment alignment; try { try { alignment = parseAlignment(alignmentSource); addAlignmentWrapper(new AlignmentWrapper(name, reference, alignmentSource, alignment)); } catch (AlignmentParserException e1) { url = new URL(alignmentSource); reader = new BufferedReader(new InputStreamReader(url.openStream())); st = ""; while (((st = reader.readLine()) != null)) { alignment = parseAlignment(st); addAlignmentWrapper(new AlignmentWrapper(name, reference, alignmentSource, alignment)); } } } catch (Exception e1) { File itemFile = new File(alignmentSource); if (itemFile.exists()) { if (itemFile.isDirectory() && !itemFile.isHidden()) { File[] files = itemFile.listFiles(); for (int i = 0; i < files.length; i++) { if (files[i].isFile() && !files[i].isHidden()) { processAlignmentsFromAlignmentSource(name, reference, files[i].getPath()); } else if (files[i].isDirectory() && !files[i].isHidden() && deepScan) { processAlignmentsFromAlignmentSource(name, reference, files[i].getPath()); } } } else if (itemFile.isFile() && !itemFile.isHidden()) { try { alignment = parseAlignment(alignmentSource); addAlignmentWrapper(new AlignmentWrapper(name, reference, alignmentSource, alignment)); } catch (Exception e2) { reader = new BufferedReader(new FileReader(alignmentSource)); st = ""; while (((st = reader.readLine()) != null)) { alignment = parseAlignment(st); addAlignmentWrapper(new AlignmentWrapper(name, reference, st, alignment)); } } } else { throw new FileNotFoundException("File " + alignmentSource + " is neither directory nor file, or it is hidden."); } } else { throw new FileNotFoundException("File " + alignmentSource + " does not exists."); } } } Code Sample 2: public File getURL(URL url) throws IOException { URLConnection conn = null; File tempFile = null; Logger l = Logger.instance(); String className = getClass().getName(); l.log(Logger.DEBUG, loggerPrefix, className + ".getURL", "GET URL " + url.toString()); try { conn = url.openConnection(); tempFile = readIntoTempFile(conn.getInputStream()); } catch (IOException ioe) { l.log(Logger.ERROR, loggerPrefix, className + ".getURL", ioe); throw ioe; } finally { conn = null; } l.log(Logger.DEBUG, loggerPrefix, className + ".getURL", "received URL"); return tempFile; }
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Code Sample 1: static String fetchURLComposeExternPackageList(String urlpath, String pkglisturlpath) { String link = pkglisturlpath + "package-list"; try { boolean relative = isRelativePath(urlpath); readPackageList((new URL(link)).openStream(), urlpath, relative); } catch (MalformedURLException exc) { return getText("doclet.MalformedURL", link); } catch (IOException exc) { return getText("doclet.URL_error", link); } return null; } Code Sample 2: public boolean copyFile(File source, File dest) { try { FileReader in = new FileReader(source); FileWriter out = new FileWriter(dest); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); return true; } catch (Exception e) { return false; } }
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Code Sample 1: private String transferWSDL(String usernameAndPassword) throws WiseConnectionException { String filePath = null; try { URL endpoint = new URL(wsdlURL); HttpURLConnection conn = (HttpURLConnection) endpoint.openConnection(); conn.setDoOutput(false); conn.setDoInput(true); conn.setUseCaches(false); conn.setRequestMethod("GET"); conn.setRequestProperty("Accept", "text/xml,application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5"); conn.setRequestProperty("Connection", "close"); if (this.password != null) { conn.setRequestProperty("Authorization", "Basic " + (new BASE64Encoder()).encode(usernameAndPassword.getBytes())); } InputStream is = null; if (conn.getResponseCode() == 200) { is = conn.getInputStream(); } else { is = conn.getErrorStream(); InputStreamReader isr = new InputStreamReader(is); StringWriter sw = new StringWriter(); char[] buf = new char[200]; int read = 0; while (read != -1) { read = isr.read(buf); sw.write(buf); } throw new WiseConnectionException("Remote server's response is an error: " + sw.toString()); } File file = new File(tmpDir, new StringBuffer("Wise").append(IDGenerator.nextVal()).append(".xml").toString()); OutputStream fos = new BufferedOutputStream(new FileOutputStream(file)); IOUtils.copyStream(fos, is); fos.close(); is.close(); filePath = file.getPath(); } catch (WiseConnectionException wce) { throw wce; } catch (Exception e) { logger.error("Failed to download wsdl from URL : " + wsdlURL); throw new WiseConnectionException("Wsdl download failed!", e); } return filePath; } Code Sample 2: private void unzipResource(final String resourceName, final File targetDirectory) throws IOException { assertTrue(resourceName.startsWith("/")); final URL resource = this.getClass().getResource(resourceName); assertNotNull("Expected '" + resourceName + "' not found.", resource); assertTrue(targetDirectory.isAbsolute()); FileUtils.deleteDirectory(targetDirectory); assertTrue(targetDirectory.mkdirs()); ZipInputStream in = null; boolean suppressExceptionOnClose = true; try { in = new ZipInputStream(resource.openStream()); ZipEntry e; while ((e = in.getNextEntry()) != null) { if (e.isDirectory()) { continue; } final File dest = new File(targetDirectory, e.getName()); assertTrue(dest.isAbsolute()); OutputStream out = null; try { out = FileUtils.openOutputStream(dest); IOUtils.copy(in, out); suppressExceptionOnClose = false; } finally { try { if (out != null) { out.close(); } suppressExceptionOnClose = true; } catch (final IOException ex) { if (!suppressExceptionOnClose) { throw ex; } } } in.closeEntry(); } suppressExceptionOnClose = false; } finally { try { if (in != null) { in.close(); } } catch (final IOException e) { if (!suppressExceptionOnClose) { throw e; } } } }
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Code Sample 1: private String SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("SHA-1"); byte[] sha1hash = new byte[40]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); sha1hash = md.digest(); return convertToHex(sha1hash); } Code Sample 2: private File magiaImagen(String titulo) throws MalformedURLException, IOException { titulo = URLEncoder.encode("\"" + titulo + "\"", "UTF-8"); setMessage("Buscando portada en google..."); URL url = new URL("http://images.google.com/images?q=" + titulo + "&imgsz=small|medium|large|xlarge"); setMessage("Buscando portada en google: conectando..."); URLConnection urlCon = url.openConnection(); urlCon.setRequestProperty("User-Agent", "MyBNavigator"); BufferedReader in = new BufferedReader(new InputStreamReader(urlCon.getInputStream(), Charset.forName("ISO-8859-1"))); String inputLine; StringBuilder sb = new StringBuilder(); while ((inputLine = in.readLine()) != null) { sb.append(inputLine); } inputLine = sb.toString(); String busqueda = "<a href=/imgres?imgurl="; setMessage("Buscando portada en google: analizando..."); while (inputLine.indexOf(busqueda) != -1) { int posBusqueda = inputLine.indexOf(busqueda) + busqueda.length(); int posFinal = inputLine.indexOf("&", posBusqueda); String urlImagen = inputLine.substring(posBusqueda, posFinal); switch(confirmarImagen(urlImagen)) { case JOptionPane.YES_OPTION: setMessage("Descargando imagen..."); URL urlImg = new URL(urlImagen); String ext = urlImagen.substring(urlImagen.lastIndexOf(".") + 1); File f = File.createTempFile("Ignotus", "." + ext); BufferedImage image = ImageIO.read(urlImg); FileOutputStream outer = new FileOutputStream(f); ImageIO.write(image, ext, outer); outer.close(); in.close(); return f; case JOptionPane.CANCEL_OPTION: in.close(); return null; default: inputLine = inputLine.substring(posBusqueda + busqueda.length()); } } return null; }
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Code Sample 1: public static String getEncodedHex(String text) { MessageDigest md = null; String encodedString = null; try { md = MessageDigest.getInstance("MD5"); md.update(text.getBytes()); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } Hex hex = new Hex(); encodedString = new String(hex.encode(md.digest())); md.reset(); return encodedString; } Code Sample 2: private static String md5(String digest, String data) throws IOException { MessageDigest messagedigest; try { messagedigest = MessageDigest.getInstance(digest); } catch (NoSuchAlgorithmException e) { throw new RuntimeException(e); } messagedigest.update(data.getBytes("ISO-8859-1")); byte[] bytes = messagedigest.digest(); StringBuilder stringbuffer = new StringBuilder(bytes.length * 2); for (int j = 0; j < bytes.length; j++) { int k = bytes[j] >>> 4 & 0x0f; stringbuffer.append(hexChars[k]); k = bytes[j] & 0x0f; stringbuffer.append(hexChars[k]); } return stringbuffer.toString(); }