instance_id stringlengths 10 57 | file_changes listlengths 1 15 | repo stringlengths 7 53 | base_commit stringlengths 40 40 | problem_statement stringlengths 11 52.5k | patch stringlengths 251 7.06M |
|---|---|---|---|---|---|
mroberge__hydrofunctions-61 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"hydrofunctions/charts.py:flow_duration",
"hydrofunctions/charts.py:cycleplot"
],
"edited_modules": [
"hydrofunctions/charts.py:flow_duration",
"hydrofunctions/charts.... | mroberge/hydrofunctions | bf1f296f4a2e31a0df9bd07860bbfa90e71e7890 | Add ability to modify the legend and titles
* HydroFunctions version: 0.1.8dev
* Python version: 3.7
### Description
Hydrofunction's built-in charts should have the ability to set a title or create a legend.
### Potential Solutions:
1) add new parameters `legend` and `title`
- `legend` default cou... | diff --git a/hydrofunctions/charts.py b/hydrofunctions/charts.py
index 8e41052..aba1b8e 100644
--- a/hydrofunctions/charts.py
+++ b/hydrofunctions/charts.py
@@ -20,7 +20,7 @@ from matplotlib.ticker import NullFormatter
import numpy as np
-def flow_duration(Qdf, xscale='logit', yscale='log', ylabel='Stream Discharg... |
mrocklin__sparse-67 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"sparse/core.py:COO._elemwise"
],
"edited_modules": [
"sparse/core.py:COO"
]
},
"file": "sparse/core.py"
}
] | mrocklin/sparse | 9be8058708127553d543a61001843e7064f885b9 | left-side np.scalar multiplication
Hi,
I noticed multiplication with `np.scalar` such as `np.float32` fails,
```python
In [1]: import numpy as np
...: import sparse
...: x = sparse.random((2, 3, 4), density=0.5)
...: x * np.float32(2.0) # This succeeds
...:
Out[1]: <COO: shape=(2, 3, 4), dtype... | diff --git a/sparse/core.py b/sparse/core.py
index e455a9d..9a28145 100644
--- a/sparse/core.py
+++ b/sparse/core.py
@@ -1,7 +1,7 @@
from __future__ import absolute_import, division, print_function
from collections import Iterable, defaultdict, deque
-from functools import reduce
+from functools import reduce, part... |
mrocklin__sparse-70 | [
{
"changes": {
"added_entities": [
"sparse/core.py:COO.__len__"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"sparse/core.py:COO"
]
},
"file": "sparse/core.py"
}
] | mrocklin/sparse | 49f64793c75f37cf137a3f86077135a22097ac0e | Minimum version of scipy
I noticed that we need at least scipy=0.19.
Can we update `requirements.txt` or work to support lower version of scipy?
| diff --git a/requirements.txt b/requirements.txt
index 6bad103..6e5129d 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,2 +1,2 @@
numpy
-scipy
+scipy >= 0.19
diff --git a/sparse/core.py b/sparse/core.py
index 9a28145..0c6dfa3 100644
--- a/sparse/core.py
+++ b/sparse/core.py
@@ -253,6 +253,29 @@ class COO(ob... |
mscroggs__symfem-181 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "setup.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
... | mscroggs/symfem | 0ee60db8756f3d0896799bdbf54b5287ddffc23e | Add as_tikz function to plots | diff --git a/.gitignore b/.gitignore
index 312cbe4..fc6fbcd 100644
--- a/.gitignore
+++ b/.gitignore
@@ -13,6 +13,4 @@ docs/_build
joss/build.sh
joss/paper.pdf
-test/test-output-*
-
_temp/
diff --git a/setup.py b/setup.py
index b13d703..ad8a0ef 100644
--- a/setup.py
+++ b/setup.py
@@ -40,7 +40,7 @@ if __name__ == ... |
mscroggs__symfem-208 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"symfem/basis_functions.py:BasisFunction.integral"
],
"edited_modules": [
"symfem/basis_functions.py:BasisFunction"
]
},
"file": "symfem/basis_functions.py"
},
{
... | mscroggs/symfem | 43fbadd94cbb4698058997fd8cccb1f76ee42bd7 | Fix rHCT element
**Describe the bug**
The rHCT element seems to be wrong once integrated. I noticed it when I tried to build the stiffness matrix for the Poisson equation using these elements.
It is clear when one tries to integrate it using symfem or sympy.
**To Reproduce**
Minimal code to reproduce the behavior... | diff --git a/CHANGELOG_SINCE_LAST_VERSION.md b/CHANGELOG_SINCE_LAST_VERSION.md
index ab4a35a..80efcc1 100644
--- a/CHANGELOG_SINCE_LAST_VERSION.md
+++ b/CHANGELOG_SINCE_LAST_VERSION.md
@@ -1,3 +1,4 @@
- Added enriched Galerkin element
- Improved plotting
- Added enriched vector Galerkin element
+- Fixed bug in integ... |
mscroggs__symfem-229 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"symfem/elements/bell.py:Bell.__init__"
],
"edited_modules": [
"symfem/elements/bell.py:Bell"
]
},
"file": "symfem/elements/bell.py"
}
] | mscroggs/symfem | 9c47d528ef4c1d08f9520ae0a8d946ced92bf0dd | Bell element is incorrect
see https://github.com/mscroggs/defelement.com/issues/224 | diff --git a/CHANGELOG_SINCE_LAST_VERSION.md b/CHANGELOG_SINCE_LAST_VERSION.md
index 1ccf031..74e4f28 100644
--- a/CHANGELOG_SINCE_LAST_VERSION.md
+++ b/CHANGELOG_SINCE_LAST_VERSION.md
@@ -4,3 +4,4 @@
- Added Alfeld-Sorokina element
- Corrected C1 and higher order C tests
- Allow element creation on non-default refe... |
msgpack__msgpack-python-105 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"msgpack/fallback.py:Unpacker.__init__",
"msgpack/fallback.py:Unpacker._read_header"
],
"edited_modules": [
"msgpack/fallback.py:Unpacker"
]
},
"file": "msgpack/... | msgpack/msgpack-python | c43fb48724049dc35c34fd389091e384dec46bb8 | msgpack.loads hangs for a long time on invalid input
Minimal reproducible example:
```
from msgpack import loads
# ---------------------- Array 32
# | ----------- Large number
# | | --- No other data
# | | |
# v v v
s = "\xdd\xff\x00... | diff --git a/.travis.yml b/.travis.yml
index b9d19c1..dad7e87 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -7,6 +7,13 @@ language: python
python:
- 2.7
+env:
+ - TOXENV=py26-c,py27-c
+ - TOXENV=py32-c,py33-c,py34-c
+ - TOXENV=py26-pure,py27-pure
+ - TOXENV=py32-pure,py33-pure,py34-pure
+ - TOXEN... |
msgpack__msgpack-python-158 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "msgpack/_version.py"
},
{
"changes": {
"added_entities": [
"msgpack/fallback.py:_check_type_strict"
],
"added_modules": [
... | msgpack/msgpack-python | c8513898e222a91ad7f6520aa8a4a5a1711cdc65 | Serialization of namedtuples
So I saw this referenced in the issue "Allow custom encoding (not character encoding but default function encoding) of unicode strings #73" and was wondering of there's a work around or any plans to implement a fix in the future.
I'm using version 0.4.6 and as far as I can tell there's ... | diff --git a/.travis.yml b/.travis.yml
index eced353..7695184 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -1,18 +1,18 @@
sudo: false
-cache:
- directories:
- - $HOME/.cache/pip
+cache: pip
language: python
python:
- - 3.5
+ - 2.7
branches:
only:
- master
env:
- - TOXENV=py27-c,py33... |
msgpack__msgpack-python-229 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"msgpack/fallback.py:StringIO.write",
"msgpack/fallback.py:Packer._pack"
],
"edited_modules": [
"msgpack/fallback.py:StringIO",
"msgpack/fallback.py:Packer"
]
... | msgpack/msgpack-python | a8d9162ca6cff6101c1f6b9547e94749c6acae96 | can't serialize bytearray
If value = bytearray(b'\x01\x87h\x05')
then packb(value, use_bin_type=True)
returns the error: can't serialize bytearray(b'\x01\x87h\x05')
Is this a known problem? | diff --git a/msgpack/_packer.pyx b/msgpack/_packer.pyx
index f24aa70..5a81709 100644
--- a/msgpack/_packer.pyx
+++ b/msgpack/_packer.pyx
@@ -10,6 +10,8 @@ from msgpack import ExtType
cdef extern from "Python.h":
int PyMemoryView_Check(object obj)
+ int PyByteArray_Check(object obj)
+ int PyByteArray_Check... |
msgpack__msgpack-python-276 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"msgpack/fallback.py:Unpacker.__init__",
"msgpack/fallback.py:Unpacker._unpack",
"msgpack/fallback.py:Packer.__init__"
],
"edited_modules": [
"msgpack/fallback.py:Unpa... | msgpack/msgpack-python | d9ec8fc905fc9ed37c86700f794adeb883b4f5ea | [RFC] "raw_as_bytes" is bad name because "raw" is legacy name
Since I had been inactive for months, I forgot new spec renamed "raw" type as "str".
Naming new option as "raw_as_bytes" is bad idea.
Luckily, I didn't release it yet.
Let's rename the option name, but what name?
It should be short and clear, and bas... | diff --git a/Makefile b/Makefile
index 6a9906c..4030080 100644
--- a/Makefile
+++ b/Makefile
@@ -18,7 +18,8 @@ serve-doc: all
.PHONY: clean
clean:
rm -rf build
- rm msgpack/*.so
+ rm -f msgpack/_packer.cpp
+ rm -f msgpack/_unpacker.cpp
rm -rf msgpack/__pycache__
rm -rf test/__pycache__
diff --git a/README.rst... |
msgpack__msgpack-python-334 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"msgpack/fallback.py:Unpacker.__init__",
"msgpack/fallback.py:Unpacker._unpack"
],
"edited_modules": [
"msgpack/fallback.py:Unpacker"
]
},
"file": "msgpack/fallb... | msgpack/msgpack-python | 3c9c6edbc88908fceb3c69ff3d6455be8b5914c8 | Option for restrict map keys
While msgpack spec doesn't prohibit any map keys, some languages allows only str as map keys.
So it's recommended for cross language compatibility.
For packer, it is useful to detect (unexpected) bin keys.
For unpacker, it is important to prevent "hashdos" attack too.
* 0.6: Add `st... | diff --git a/msgpack/_unpacker.pyx b/msgpack/_unpacker.pyx
index a5403d8..2163425 100644
--- a/msgpack/_unpacker.pyx
+++ b/msgpack/_unpacker.pyx
@@ -27,6 +27,7 @@ cdef extern from "unpack.h":
bint use_list
bint raw
bint has_pairs_hook # call object_hook with k-v pairs
+ bint strict_map... |
msgpack__msgpack-python-386 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"msgpack/fallback.py:Unpacker.__init__",
"msgpack/fallback.py:Packer.__init__"
],
"edited_modules": [
"msgpack/fallback.py:Unpacker",
"msgpack/fallback.py:Packer"
... | msgpack/msgpack-python | de320488ae494b85a03b60dd33f91b650033d775 | unpack should decode string types by default
msgpack has native text and binary types, but the default behavior of `msgpack.unpackb` of the text type is to return the still-encoded bytes, rather than the decoded text (unicode on Python 2, str on Python 3). The msgpack spec [specifies](https://github.com/msgpack/msgpac... | diff --git a/README.rst b/README.rst
index 82b6c02..f9f074f 100644
--- a/README.rst
+++ b/README.rst
@@ -37,36 +37,16 @@ Sadly, this doesn't work for upgrade install. After `pip install -U msgpack-pyt
msgpack is removed and `import msgpack` fail.
-Deprecating encoding option
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Compati... |
msgpack__msgpack-python-388 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"msgpack/fallback.py:Unpacker.read_bytes"
],
"edited_modules": [
"msgpack/fallback.py:Unpacker"
]
},
"file": "msgpack/fallback.py"
}
] | msgpack/msgpack-python | 7a8ce0f9ca910a851b6835d26b1d6970a188fa4e | Broken fallback implementation of Unpacker.read_bytes
```
>>> from msgpack import *
>>> u = Unpacker(); u.feed('x'); u.read_bytes(1)
'x'
>>> u.next()
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "msgpack/_unpacker.pyx", line 562, in msgpack._cmsgpack.Unpacker.__next__
File "... | diff --git a/msgpack/fallback.py b/msgpack/fallback.py
index 388a5ab..85a711b 100644
--- a/msgpack/fallback.py
+++ b/msgpack/fallback.py
@@ -357,7 +357,9 @@ class Unpacker(object):
return self._buffer[self._buff_i :]
def read_bytes(self, n):
- return self._read(n)
+ ret = self._read(n)
+ ... |
msgpack__msgpack-python-427 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"msgpack/fallback.py:Unpacker.read_bytes",
"msgpack/fallback.py:Unpacker._read",
"msgpack/fallback.py:Unpacker._reserve"
],
"edited_modules": [
"msgpack/fallback.py:Un... | msgpack/msgpack-python | b04690012d5d77cfe5074893686c4d55ec780300 | tell() is incorrect after read_bytes()
Using the default `._cmsgpack` implementation of an `Unpacker`, you will get the wrong answer if you call `tell()` after `read_bytes()`. Here's a simple repro:
```
import msgpack
from io import BytesIO
buf = BytesIO(b'my data')
u = msgpack.Unpacker(buf)
print(u.tell())
u.... | diff --git a/msgpack/_unpacker.pyx b/msgpack/_unpacker.pyx
index 43c93a2..4340e04 100644
--- a/msgpack/_unpacker.pyx
+++ b/msgpack/_unpacker.pyx
@@ -484,8 +484,10 @@ cdef class Unpacker(object):
nread = min(self.buf_tail - self.buf_head, nbytes)
ret = PyBytes_FromStringAndSize(self.buf + self.buf_head... |
msiemens__tinydb-46 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"tinydb/database.py:Table.__init__",
"tinydb/database.py:Table._read"
],
"edited_modules": [
"tinydb/database.py:Table"
]
},
"file": "tinydb/database.py"
}
] | msiemens/tinydb | 65c302427777434c3c01bf36eb83ab86e6323a5e | Can not handle data by integer eid
The id of the element will change to a unicode string after JSON serialization/deserialization. This causes no way to get the element by integer eid.
```python
Python 2.7.6 (default, Sep 9 2014, 15:04:36)
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.39)] on darwin
Type "he... | diff --git a/tinydb/database.py b/tinydb/database.py
index 31a7483..cdaad19 100644
--- a/tinydb/database.py
+++ b/tinydb/database.py
@@ -199,7 +199,7 @@ class Table(object):
old_ids = self._read().keys()
if old_ids:
- self._last_id = max(int(i, 10) for i in old_ids)
+ self._las... |
mtgjson__mtgjson-1148 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"mtgjson5/classes/mtgjson_card.py:MtgjsonCardObject.__lt__"
],
"edited_modules": [
"mtgjson5/classes/mtgjson_card.py:MtgjsonCardObject"
]
},
"file": "mtgjson5/classes/mt... | mtgjson/mtgjson | 141e2c73f005c0e8827584eb672f2a5a9abc2aa3 | card lists with equal (or similar) collector numbers is not sorted
following up from https://github.com/mtgjson/mtgjson/issues/1127 it seems like the card list of WCD sets gets unsorted depending on the card number -- i caught one as example but i think the numbering scheme of the whole sets might be confusing to whate... | diff --git a/mtgjson5/classes/mtgjson_card.py b/mtgjson5/classes/mtgjson_card.py
index 2af2e93..bc31bc7 100644
--- a/mtgjson5/classes/mtgjson_card.py
+++ b/mtgjson5/classes/mtgjson_card.py
@@ -238,14 +238,16 @@ class MtgjsonCardObject:
if self.number == other.number:
return self_side < other_side
... |
mtgjson__mtgjson-1228 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"mtgjson5/providers/cardmarket/monolith.py:CardMarketProvider._get_card_market_data",
"mtgjson5/providers/cardmarket/monolith.py:CardMarketProvider.generate_today_price_dict"
],
"edit... | mtgjson/mtgjson | 4df1afa057bf1fb3dec32dfe5cc2afc741885b75 | Change Cardmarket price from 1-day Average to Price Trend
I’d like to suggest replacing the current Cardmarket 1-day average price with the "Price Trend" metric. The Price Trend is the standard reference used by most EU players and traders, offering a more stable and accurate reflection of card values. Switching to the... | diff --git a/mtgjson5/providers/cardmarket/monolith.py b/mtgjson5/providers/cardmarket/monolith.py
index 2b5d7ae..a54599a 100644
--- a/mtgjson5/providers/cardmarket/monolith.py
+++ b/mtgjson5/providers/cardmarket/monolith.py
@@ -78,10 +78,12 @@ class CardMarketProvider(AbstractProvider):
for mkm_entry in data:... |
mtgjson__mtgjson-469 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "mtgjson4/__init__.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"mtgjson4/output... | mtgjson/mtgjson | b3d7bc4531bdca514dc1cf9f4ea5f6eac1104f89 | Add Pioneer support
Pioneer.json and PioneerCards.json | diff --git a/.travis.yml b/.travis.yml
index 50bff20..7335254 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -15,5 +15,4 @@ script:
- PYTHONPATH=. pytest
- black --check --diff .
- pylint mtgjson4 tests
- - mypy .
- npx eclint check $(git ls-files)
diff --git a/mtgjson4/__init__.py b/mtgjson4/__init__.py
in... |
mtgjson__mtgjson-470 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "mtgjson4/__init__.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"mtgjson4/output... | mtgjson/mtgjson | b3d7bc4531bdca514dc1cf9f4ea5f6eac1104f89 | Keyword is broken #2
The game continue ! #434
data seems broken after 38'th abilityWord | diff --git a/.travis.yml b/.travis.yml
index 50bff20..7335254 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -15,5 +15,4 @@ script:
- PYTHONPATH=. pytest
- black --check --diff .
- pylint mtgjson4 tests
- - mypy .
- npx eclint check $(git ls-files)
diff --git a/mtgjson4/__init__.py b/mtgjson4/__init__.py
in... |
munichpavel__clovek-ne-jezi-se-14 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"clovek_ne_jezi_se/agent.py:Player.roll",
"clovek_ne_jezi_se/agent.py:Player._get_roll_value",
"clovek_ne_jezi_se/agent.py:Player.roll_is_valid"
],
"edited_modules": [
... | munichpavel/clovek-ne-jezi-se | 5c6ec835076b946987ce6c28390ee5414bc86659 | Move dice roll from agent / player to game
Not sure best place to have dice roll, but there is no reason to have it along with agent definitions. | diff --git a/clovek_ne_jezi_se/agent.py b/clovek_ne_jezi_se/agent.py
index 715db04..49cd9ea 100644
--- a/clovek_ne_jezi_se/agent.py
+++ b/clovek_ne_jezi_se/agent.py
@@ -1,7 +1,7 @@
-from random import randint
+
import attr
-from .consts import EMPTY_SYMBOL, NR_OF_DICE_FACES
+from .consts import EMPTY_SYMBOL
@at... |
munichpavel__clovek-ne-jezi-se-15 | [
{
"changes": {
"added_entities": [
"clovek_ne_jezi_se/game.py:Game._set_player_leave_waiting",
"clovek_ne_jezi_se/game.py:Game.set_symbol_waiting_count",
"clovek_ne_jezi_se/game.py:Game.set_symbol_space_array"
],
"added_modules": null,
"edited_entities": [
... | munichpavel/clovek-ne-jezi-se | 0f78ee7311764ced69ec63d05d7d2ca6aa0f47cc | Remove unused methods
Like `Game.assign_to_space` | diff --git a/clovek_ne_jezi_se/game.py b/clovek_ne_jezi_se/game.py
index ad7cb84..8dc6221 100644
--- a/clovek_ne_jezi_se/game.py
+++ b/clovek_ne_jezi_se/game.py
@@ -128,7 +128,6 @@ class Move:
kind = attr.ib()
roll = attr.ib(kw_only=True, default=None)
start = attr.ib(kw_only=True, default=None, validato... |
munichpavel__clovek-ne-jezi-se-33 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"clovek_ne_jezi_se/agents.py:HumanPlayer.choose_move"
],
"edited_modules": [
"clovek_ne_jezi_se/agents.py:HumanPlayer"
]
},
"file": "clovek_ne_jezi_se/agents.py"
},
... | munichpavel/clovek-ne-jezi-se | 7e115382bc6b9b56d0173bc5a1645c4158ee84f3 | Index error during game play
My best guess is that the called `advance_edges` below is empty. Need some logic to return `None` in this case for `to_space`. Would be good to have play logging for situations like this, e.g. #16
```
---------------------------------------------------------------------------
IndexErr... | diff --git a/clovek_ne_jezi_se/agents.py b/clovek_ne_jezi_se/agents.py
index 33be7c5..8c011d8 100644
--- a/clovek_ne_jezi_se/agents.py
+++ b/clovek_ne_jezi_se/agents.py
@@ -32,5 +32,4 @@ class HumanPlayer(Player):
chosen_move_idx = int(input('Enter chosen move index: '))
res = allowed_moves[chosen_m... |
music-computing__amads-55 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"amads/algorithms/slice/salami.py:salami_slice"
],
"edited_modules": [
"amads/algorithms/slice/salami.py:salami_slice"
]
},
"file": "amads/algorithms/slice/salami.py"
... | music-computing/amads | 43ecb0422928c0b8454b95041325ce9e87e617a9 | Slice should inherit from Sequence
Thanks @diwangislucky for the suggestion! | diff --git a/amads/algorithms/slice/salami.py b/amads/algorithms/slice/salami.py
index 4827a23..ebb4401 100644
--- a/amads/algorithms/slice/salami.py
+++ b/amads/algorithms/slice/salami.py
@@ -194,10 +194,10 @@ def salami_slice(
slices.append(
Slice(
- notes=notes,
+ ... |
mutalyzer__hgvs-parser-9 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"hgvsparser/to_model.py:add_token"
],
"edited_modules": [
"hgvsparser/to_model.py:add_token"
]
},
"file": "hgvsparser/to_model.py"
}
] | mutalyzer/hgvs-parser | 035ca562875b4e9b2402147a1260686d7c676407 | 0 vs 1 offsets
I was surprised to find my locations shift -1.
A parser shouldnt make any semantic changes probably. | diff --git a/hgvsparser/to_model.py b/hgvsparser/to_model.py
index e243d36..e0f0564 100644
--- a/hgvsparser/to_model.py
+++ b/hgvsparser/to_model.py
@@ -114,7 +114,7 @@ def add_token(parent, token_type, token_value):
if isinstance(parent, dict):
if token_type == 'POSITION':
if token_value != ... |
mverleg__pyjson_tricks-67 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"json_tricks/encoders.py:pandas_encode"
],
"edited_modules": [
"json_tricks/encoders.py:pandas_encode"
]
},
"file": "json_tricks/encoders.py"
}
] | mverleg/pyjson_tricks | 7a309c9dfaf2a43987e5b580fbb30290e4d4f149 | Pandas DeprecationWarning: .ix is deprecated | diff --git a/json_tricks/encoders.py b/json_tricks/encoders.py
index 3082a8f..f6573da 100644
--- a/json_tricks/encoders.py
+++ b/json_tricks/encoders.py
@@ -316,7 +316,7 @@ def pandas_encode(obj, primitives=False):
))
repr['index'] = tuple(obj.index.values)
for k, name in enumerate(obj.columns.values):
- re... |
mvondracek__PA193_mnemonic_Slytherin-64 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pa193mnemonicslytherin/mnemoniccli.py:Config.init_parser",
"pa193mnemonicslytherin/mnemoniccli.py:action_generate",
"pa193mnemonicslytherin/mnemoniccli.py:action_recover",
"pa193... | mvondracek/PA193_mnemonic_Slytherin | a23ee44909ca5f930478e0d7ead02b4bae6a0715 | Report invalid UTF-8 sequence in input mnemonic as `EX_DATAERR = 65`
~~~
'utf-8' codec can't decode byte 0xca in position 151: invalid continuation byte
'utf-8' codec can't decode byte 0xa5 in position 85: invalid start byte
'utf-8' codec can't decode byte 0x96 in position 89: invalid start byte
'utf-8' codec c... | diff --git a/pa193mnemonicslytherin/mnemoniccli.py b/pa193mnemonicslytherin/mnemoniccli.py
index 4d27521..5774fa6 100644
--- a/pa193mnemonicslytherin/mnemoniccli.py
+++ b/pa193mnemonicslytherin/mnemoniccli.py
@@ -19,6 +19,7 @@ from binascii import unhexlify, hexlify, Error
from enum import Enum, unique
from pprint im... |
mwaskom__seaborn-1483 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/basic.py:_BasicPlotter.add_legend_data"
],
"edited_modules": [
"seaborn/basic.py:_BasicPlotter"
]
},
"file": "seaborn/basic.py"
}
] | mwaskom/seaborn | c0a6d850d29b7b8c0e3ecc8a14c76f11880fb9f9 | Improve multiple semantic legend titles
Currently the legends for lineplot (#1285) and scatterplot (#1436) don't indicate what variable each of the levels represent. I punted on this but it needs a solution. One option is to cram everything into the legend title but that's not ideal. I think doing something with legend... | diff --git a/seaborn/basic.py b/seaborn/basic.py
index c2916077..868e4749 100644
--- a/seaborn/basic.py
+++ b/seaborn/basic.py
@@ -550,8 +550,10 @@ class _BasicPlotter(object):
err = "`legend` must be 'brief', 'full', or False"
raise ValueError(err)
- keys = []
legend_kwargs ... |
mwaskom__seaborn-1727 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/relational.py:_RelationalPlotter._semantic_type"
],
"edited_modules": [
"seaborn/relational.py:_RelationalPlotter"
]
},
"file": "seaborn/relational.py"
}
] | mwaskom/seaborn | b9551aff1e2b020542a5fb610fec468b69b87c6e | Scatterplot with single-valued boolean column for Hue gives faded plot & bad legend
Using a Boolean column for hue in a scatterplot gives a plot with faded points and a legend with the same color for True and False.
:
try:
float_data = data.astype(np.float)
values = np.unique(float_data.dr... |
mwaskom__seaborn-1785 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/relational.py:_RelationalPlotter.parse_size"
],
"edited_modules": [
"seaborn/relational.py:_RelationalPlotter"
]
},
"file": "seaborn/relational.py"
}
] | mwaskom/seaborn | b9551aff1e2b020542a5fb610fec468b69b87c6e | sizes parameter for scatterplot does not accept dict with more than 2 objets
When trying to build a scatterplot with my data, I'd like to pass a dictionary to the sizes parameter, so
that I can have the same legend from one graphic to another.
If I write :
```
ax = sns.scatterplot(x="pourcents", y="sources",
... | diff --git a/seaborn/relational.py b/seaborn/relational.py
index 77bebe30..02dd6e6b 100644
--- a/seaborn/relational.py
+++ b/seaborn/relational.py
@@ -428,6 +428,10 @@ class _RelationalPlotter(object):
except TypeError:
limits = None
+ # enforce numeric data to be ... |
mwaskom__seaborn-2205 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core.py:VectorPlotter._assign_variables_wideform",
"seaborn/_core.py:VectorPlotter._assign_variables_longform"
],
"edited_modules": [
"seaborn/_core.py:VectorPlotter... | mwaskom/seaborn | 9d96d8f66c2171080794efdb591774cf05c6aa5e | longform value error should give the name of the semantic too
e.g.
```python
sns.lineplot(x="time")
```
raises
> Could not interpret input 'time'`
but something like
> Could not interpret the argument for `x`: 'time'
Would probably be more helpful... | diff --git a/seaborn/_core.py b/seaborn/_core.py
index 9c59ab04..0bf7b3ff 100644
--- a/seaborn/_core.py
+++ b/seaborn/_core.py
@@ -708,10 +708,15 @@ class VectorPlotter:
the inputs (or None when no name can be determined).
"""
- # TODO raise here if any kwarg values are not None,
- ... |
mwaskom__seaborn-2221 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core.py:SizeMapping.categorical_mapping"
],
"edited_modules": [
"seaborn/_core.py:SizeMapping"
]
},
"file": "seaborn/_core.py"
}
] | mwaskom/seaborn | ccd56351ce244b3a0268df8cb8090eb30f033e41 | categorical sizes plot now has order reversed
From the relational tutorial, on 0.11.0.dev0:
```python
sns.relplot(x="time", y="firing_rate",
hue="coherence", size="choice",
palette=palette,
kind="line", data=dots);
```
:
sizes = self.plotter._default_size_range
# For categorical sizes, use regularly-spaced linear steps
- ... |
mwaskom__seaborn-2229 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core.py:HueMapping.numeric_mapping"
],
"edited_modules": [
"seaborn/_core.py:HueMapping"
]
},
"file": "seaborn/_core.py"
},
{
"changes": {
"added... | mwaskom/seaborn | eba6a57d67e056740c156dde1d26e12bbc7a8d75 | Scatterplot fails with matplotlib==3.3.1
Matplotlib 3.3.1 has just been released and it breaks `scatterplot` (and `relplot(kind="scatter")`). The problem is the `marker=''` argument in the legend artists creation, which now raises an exception upon drawing (seems unintentional). See [https://github.com/matplotlib/matpl... | diff --git a/ci/deps_minimal.txt b/ci/deps_minimal.txt
index 021ddef1..8fed0418 100644
--- a/ci/deps_minimal.txt
+++ b/ci/deps_minimal.txt
@@ -1,4 +1,4 @@
numpy
scipy
-matplotlib!=3.3.1
+matplotlib
pandas
diff --git a/doc/docstrings/lineplot.ipynb b/doc/docstrings/lineplot.ipynb
index b4fc8a22..88a5bde9 100644
--- a... |
mwaskom__seaborn-2273 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:_DistributionPlotter.plot_bivariate_density"
],
"edited_modules": [
"seaborn/distributions.py:_DistributionPlotter"
]
},
"file": "seaborn/distr... | mwaskom/seaborn | 607ded2cd65d98a93b09418b1523de71265f360d | Lineplot CI results differ between seaborn v0.10.1 and v0.11.0 when data includes NaN values
I noticed that the lineplot CI results differ between seaborn `0.10.1` and `0.11.0` when data includes `NaN` values. Specifically, the CI results contain `NaN` values in the newer seaborn version.
Reading through the release... | diff --git a/seaborn/distributions.py b/seaborn/distributions.py
index d548c774..4fc79efc 100644
--- a/seaborn/distributions.py
+++ b/seaborn/distributions.py
@@ -1050,7 +1050,7 @@ class _DistributionPlotter(VectorPlotter):
estimator = KDE(**estimate_kws)
- if "hue" not in self.variables:
+ i... |
mwaskom__seaborn-2368 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/axisgrid.py:PairGrid.__init__",
"seaborn/axisgrid.py:PairGrid._map_diag_iter_hue",
"seaborn/axisgrid.py:PairGrid._plot_bivariate_iter_hue"
],
"edited_modules": [
... | mwaskom/seaborn | 2717408b564994002fe08f72ba2dd7e1acf359b6 | map_* methods of PairGrid broken in 0.11.0
Hi,
I discovered that the map_* methods of PairGrid seem to be broken in version 0.11.0 for user defined functions. See reproducible example below with a corrfunc defined to plot the pearson correlation value on the lower plots. The function doesn't seem to get evaluated in... | diff --git a/seaborn/axisgrid.py b/seaborn/axisgrid.py
index 04b243e7..7ab30cac 100644
--- a/seaborn/axisgrid.py
+++ b/seaborn/axisgrid.py
@@ -1207,11 +1207,19 @@ class PairGrid(Grid):
# Sort out the hue variable
self._hue_var = hue
if hue is None:
- self.hue_names = ["_nolegend_"]... |
mwaskom__seaborn-2379 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core.py:variable_type"
],
"edited_modules": [
"seaborn/_core.py:variable_type"
]
},
"file": "seaborn/_core.py"
},
{
"changes": {
"added_entities"... | mwaskom/seaborn | ae123d79ed341d352d3f29b6936c044350b75e86 | Categorical variable with numerical classes incorrectly plotted only on y axis
Dear All,
I think I may have found a bug in Seaborn categorical plotting functions.
If a DataFrame column contains numbers, and it is explicitely converted to CategoricalDType, it will be correctly treated as categorical by functions s... | diff --git a/seaborn/_core.py b/seaborn/_core.py
index cfd2a70d..0531ba63 100644
--- a/seaborn/_core.py
+++ b/seaborn/_core.py
@@ -1177,28 +1177,32 @@ class VectorPlotter:
def variable_type(vector, boolean_type="numeric"):
- """Determine whether a vector contains numeric, categorical, or dateime data.
+ """
... |
mwaskom__seaborn-2386 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core.py:VectorPlotter._assign_variables_longform"
],
"edited_modules": [
"seaborn/_core.py:VectorPlotter"
]
},
"file": "seaborn/_core.py"
}
] | mwaskom/seaborn | 4fe84d4ff25276f0ef4ea2a18d0a31741547cb0f | scatterplot throws an error when referencing int column by name
## Summary
`scatterplot` throws an error when trying to reference column by name if the column name is an int
In seaborn 0.10 and lower, I was able to pass column names to `scatterplot` that were integers (e.g. `scatterplot(data=data, x=0, y=1)`). Aft... | diff --git a/doc/releases/v0.11.1.txt b/doc/releases/v0.11.1.txt
index 0f9c2fb0..49f884b8 100644
--- a/doc/releases/v0.11.1.txt
+++ b/doc/releases/v0.11.1.txt
@@ -2,13 +2,15 @@
v0.11.1 (Unreleased)
--------------------
+- |Fix| Restored support for using tuples or numeric keys to reference fields in a long-form `da... |
mwaskom__seaborn-2417 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core.py:VectorPlotter.comp_data"
],
"edited_modules": [
"seaborn/_core.py:VectorPlotter"
]
},
"file": "seaborn/_core.py"
}
] | mwaskom/seaborn | aad96f8d2e36ceceb82a42b69aa3a8f47ef7210d | histplot with categorical values crashes with missing data, though numerical values work fine
Not sure if this is intended behaviour, but it caught me out due to the difference in handling numerical/categorical data. I note that drawing histograms of categorical data is labelled as experimental, so ignore/close if that... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index dc9ade22..4163d56c 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -4,7 +4,9 @@ v0.12.0 (Unreleased)
- |API| |Feature| |Enhancement| TODO (Flesh this out further). Increased flexibility of what can be shown by the internal... |
mwaskom__seaborn-2458 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:_DistributionPlotter.plot_rug"
],
"edited_modules": [
"seaborn/distributions.py:_DistributionPlotter"
]
},
"file": "seaborn/distributions.py"
... | mwaskom/seaborn | ba086c2096962bbffde2a8eb721b322f382f9e0e | rugplot fails with datetime data
e.g.
```python
sns.rugplot(x=np.arange("2015-01-01", "2020-01-01", dtype="datetime64[m]"))
```
```python-traceback
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-i... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index 1e688924..96944872 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -18,6 +18,8 @@ v0.12.0 (Unreleased)
- |Fix| In :func:`lineplot, allowed the `dashes` keyword to set the style of a line without mapping a `style` variable ... |
mwaskom__seaborn-2460 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:_DistributionPlotter._artist_kws",
"seaborn/distributions.py:_DistributionPlotter.plot_univariate_histogram",
"seaborn/distributions.py:_DistributionPlotter.plot... | mwaskom/seaborn | 136b462b30194f6579fd761d639118d0ceb66f55 | unfilled kdeplot ignores alpha=
It pulls `alpha` out of the kwargs and does some special handling for filled densities, but forgets to pass it back in in the unfilled case. | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index 96944872..86415a74 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -20,6 +20,8 @@ v0.12.0 (Unreleased)
- |Fix| In :func:`rugplot`, fixed a bug that prevented the use of datetime data (:pr:`2458`).
+- |Fix| In :func:`hist... |
mwaskom__seaborn-2462 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:_DistributionPlotter._resolve_multiple",
"seaborn/distributions.py:_DistributionPlotter.plot_univariate_histogram",
"seaborn/distributions.py:_DistributionPlotte... | mwaskom/seaborn | d0acb8cd8308d66cb95795e2fdad99c4220403d8 | histplot ignoring multiple= when hue argument is a numpy array or list
e.g.
```
sns.histplot(x=tips["total_bill"], hue=tips["time"].to_numpy(), multiple="dodge")
```
It works fine when passing a pandas Series directly or referencing a column in an array. | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index 82ab2a9a..6ae8da68 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -18,13 +18,17 @@ v0.12.0 (Unreleased)
- |Enhancement| In :func:`histplot`, added `stat="percent"` as an option for normalization such that bar heights sum ... |
mwaskom__seaborn-2468 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:_DistributionPlotter.plot_bivariate_histogram"
],
"edited_modules": [
"seaborn/distributions.py:_DistributionPlotter"
]
},
"file": "seaborn/dis... | mwaskom/seaborn | beb7f822895375143de396659cb562465ade25d7 | bivariate displot with kind="hist" ignores common_norm=False if hue is not assigned
Somehow similar to #2377, but for `kind='hist'` and with `common_norm=False` being ignored.
If I understand it well, passing `common_norm=False` to `sns.distplot` should produce plots with independent "z" scale. While this is the beh... | diff --git a/seaborn/distributions.py b/seaborn/distributions.py
index 0b07d687..47f59cbf 100644
--- a/seaborn/distributions.py
+++ b/seaborn/distributions.py
@@ -737,7 +737,7 @@ class _DistributionPlotter(VectorPlotter):
)
full_heights.append(sub_heights)
- common_color_norm = "hue" ... |
mwaskom__seaborn-2477 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:_DistributionPlotter.plot_univariate_histogram"
],
"edited_modules": [
"seaborn/distributions.py:_DistributionPlotter"
]
},
"file": "seaborn/di... | mwaskom/seaborn | b1dc1bc336ca2aec8308915836ec0550397e856e | shrink parameter in histplot shifts data
The smaller the value of the `shrink` parameter, the more the values in the histogram get shifted towards positive values.
`import seaborn as sns`
`import numpy as np`
`r = np.random.random(100)`
`sns.histplot(r);`
`sns.histplot(r, shrink=0.5);`
![Screen Shot 2... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index fbbc2030..b506c8fd 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -28,6 +28,8 @@ v0.12.0 (Unreleased)
- |Fix| In :func:`histplot` and :func:`kdeplot`, fixed a bug where the `multiple` was ignored when `hue` was provided a... |
mwaskom__seaborn-2504 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:_DistributionPlotter.plot_univariate_ecdf",
"seaborn/distributions.py:_DistributionPlotter._plot_single_rug"
],
"edited_modules": [
"seaborn/distribu... | mwaskom/seaborn | ba4bd0fa0a90b2bd00cb62c2b4a5e38013a73ac6 | displot(kind='ecdf',..., log_scale=True) not working
The following line of code gives an error:
```
sns.displot(kind='ecdf', data=df, x='col_1', log_scale=True)
UserWarning: Data has no positive values, and therefore cannot be log-scaled.
```
My data is all positive and kind='hist' or 'kde' works just fine... | diff --git a/seaborn/distributions.py b/seaborn/distributions.py
index b227a268..821926f1 100644
--- a/seaborn/distributions.py
+++ b/seaborn/distributions.py
@@ -57,8 +57,10 @@ multiple : {{"layer", "stack", "fill"}}
""",
log_scale="""
log_scale : bool or number, or pair of bools or numbers
- Set a log s... |
mwaskom__seaborn-2522 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:_DistributionPlotter.plot_univariate_histogram"
],
"edited_modules": [
"seaborn/distributions.py:_DistributionPlotter"
]
},
"file": "seaborn/di... | mwaskom/seaborn | 6d84f82b8edeb00963d74fa5e29b5c9fc3e7248c | histplot with small bins becames black by cluttering of rectangle edges when using x axis in log scale
### Description
When increasing the number of values on a 1D histogram, the number of bins increase and they become smaller. In general, when that happens the rectangle edges disappear so that the distribution preser... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index b506c8fd..d552f874 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -30,6 +30,8 @@ v0.12.0 (Unreleased)
- |Fix| In :func:`histplot`, fixed a bug where using `shrink` with non-discrete bins shifted bar positions inaccurately... |
mwaskom__seaborn-2566 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/axisgrid.py:pairplot",
"seaborn/axisgrid.py:jointplot"
],
"edited_modules": [
"seaborn/axisgrid.py:pairplot",
"seaborn/axisgrid.py:jointplot"
]
},
... | mwaskom/seaborn | 5ce48afa4a426af749c9c9ad2130eccc6c05b32b | Supress Warnings in library
Thanks for a great library. please suppress the warnings below.
**Example :**
`sns.pairplot(df_centroids, hue="CUST_ID_NEW",palette="bright", height=2, aspect=1)`
seaborn version : 0.11.1
matplotlib:3.2.2
```
/usr/local/lib/python3.7/dist-packages/seaborn/distributions.py:3... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index fba59d17..eee607ed 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -20,6 +20,8 @@ A paper describing seaborn was published in the `Journal of Open Source Software
- |Enhancement| In :func:`histplot`, added `stat="percent"`... |
mwaskom__seaborn-2577 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core.py:VectorPlotter.comp_data"
],
"edited_modules": [
"seaborn/_core.py:VectorPlotter"
]
},
"file": "seaborn/_core.py"
},
{
"changes": {
"added... | mwaskom/seaborn | 3750373de40e2de9854dcfeb59debf5e9ebe3913 | Multiple categorical function calls set categorical axis limits incorrectly
This pertains to the "new" categorical behavior (i.e. the updates to `stripplot` and `swarmplot` post v0.11.1 release).
```python
ax = sns.stripplot(x=["A", "B", "C"], y=[1, 3, 2])
ax = sns.stripplot(x=["E", "F"], y=[5, 2])
ax.set_xlim(-.... | diff --git a/seaborn/_core.py b/seaborn/_core.py
index c901998f..2c948393 100644
--- a/seaborn/_core.py
+++ b/seaborn/_core.py
@@ -1086,6 +1086,7 @@ class VectorPlotter:
.copy(deep=False)
.drop(["x", "y"], axis=1, errors="ignore")
)
+
for var in "yx":
... |
mwaskom__seaborn-2623 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:displot"
],
"edited_modules": [
"seaborn/distributions.py:displot"
]
},
"file": "seaborn/distributions.py"
},
{
"changes": {
"add... | mwaskom/seaborn | 9c3dba6eb0193552123eaa14fac1a90974fa24f9 | `FacetGrid` data no longer contains all columns from original input dataframe
After recently upgrading from seaborn 0.9.1 to 0.11.1, I noticed that after using `relplot` on a dataframe, the returned `FacetGrid` object only contains a transformed dataframe which makes `FacetGrid.facet_data()` return a lot less useful fo... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index bd4bc7ce..c3ff1fbe 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -32,7 +32,7 @@ A paper describing seaborn was published in the `Journal of Open Source Software
- |Feature| Added a ``refline`` method to :class:`FacetGrid... |
mwaskom__seaborn-2640 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/distributions.py:_DistributionPlotter.plot_bivariate_histogram"
],
"edited_modules": [
"seaborn/distributions.py:_DistributionPlotter"
]
},
"file": "seaborn/dis... | mwaskom/seaborn | bfb7a046183647b145ad69600901dded26aa8292 | Bivariate displot and various bin size does not work in 2D
~~~python
sns.__version__, matplotlib.__version__
('0.11.1', '3.4.2')
~~~
This works
~~~python
import seaborn as sns
titanic = sns.load_dataset("titanic")
sns.displot(
data=titanic,
x="age",
y='fare',
col="survived",
com... | diff --git a/doc/releases/v0.11.2.txt b/doc/releases/v0.11.2.txt
index 37318252..3c4ae495 100644
--- a/doc/releases/v0.11.2.txt
+++ b/doc/releases/v0.11.2.txt
@@ -36,6 +36,8 @@ This is a minor release that addresses issues in the v0.11 series and adds a sma
- |Fix| In :func:`displot`, the default alpha value now adj... |
mwaskom__seaborn-2776 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core.py:VectorPlotter.comp_data"
],
"edited_modules": [
"seaborn/_core.py:VectorPlotter"
]
},
"file": "seaborn/_core.py"
}
] | mwaskom/seaborn | bfbd6ad5b9717db42e302177d867b4a273df162b | Performance regression with duplicate index 0.11.1->0.11.2
I am using `histplot` for plotting simple histogram plots for medium sized data-sizes.
I was using `histplot` for histogram determinations in my dataset using 0.11.1 and all worked very nicely and fast.
Then upon upgrading to 0.11.2 it suddenly never fini... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index 8f843771..7e9250ba 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -16,6 +16,8 @@ A paper describing seaborn was published in the `Journal of Open Source Software
- In :func:`swarmplot`, the proportion of points that mus... |
mwaskom__seaborn-2814 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core/plot.py:Plotter._setup_split_generator"
],
"edited_modules": [
"seaborn/_core/plot.py:Plotter"
]
},
"file": "seaborn/_core/plot.py"
},
{
"changes"... | mwaskom/seaborn | 34b887325ca01033d39698c18a1d14941ef574f0 | seaborn violinplot does not work right for 'inner=points' and 'inner=box' options
When plotting a violinplot I can't get the inner='points' and inner='box' options work for the left part (Hue='Before').
![... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index 8c4d37b7..1ce2c782 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -57,10 +57,13 @@ Other updates
- |Fix| Fixed two edgecases in :func:`histplot` when only `binwidth` was provided (:pr:`2813').
-- |Fix| FacetGrid subplot... |
mwaskom__seaborn-2839 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core/plot.py:Plot.add",
"seaborn/_core/plot.py:Plotter._plot_layer"
],
"edited_modules": [
"seaborn/_core/plot.py:Layer",
"seaborn/_core/plot.py:Plot",
... | mwaskom/seaborn | 627c6c274a9a3acbca2911411a53299d963e354b | next gen version (0.12.0a1) bug: StopIteration when doing relplot with kind='box'
version: 0.12.0a1
The following code will produce StopIteration error, but works fine in stable version (e.g., 0.11.2)
```python
import seaborn as sns
import pandas as pd
tips = sns.load_dataset('tips')
sns.catplot(data=tips, y='t... | diff --git a/seaborn/_core/plot.py b/seaborn/_core/plot.py
index 56d933cb..2469df00 100644
--- a/seaborn/_core/plot.py
+++ b/seaborn/_core/plot.py
@@ -55,6 +55,7 @@ class Layer(TypedDict, total=False):
source: DataSource
vars: dict[str, VariableSpec]
orient: str
+ legend: bool
class FacetSpec(Typ... |
mwaskom__seaborn-2845 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_oldcore.py:HueMapping.__init__"
],
"edited_modules": [
"seaborn/_oldcore.py:HueMapping"
]
},
"file": "seaborn/_oldcore.py"
},
{
"changes": {
"add... | mwaskom/seaborn | de1ecf0e0d0064982ebf4f13e1b1afddd27c80ff | Two bugs in catplot with kind="swarm"
```python
sns.catplot(
tips, x="day", y="total_bill", col="time",
height=3, kind="swarm",
)
```
Issues:
- A palette is mapped to the x variable (`catplot`... | diff --git a/seaborn/_oldcore.py b/seaborn/_oldcore.py
index b23fd9fb..c9218c1f 100644
--- a/seaborn/_oldcore.py
+++ b/seaborn/_oldcore.py
@@ -93,7 +93,11 @@ class HueMapping(SemanticMapping):
data = plotter.plot_data.get("hue", pd.Series(dtype=float))
- if data.notna().any():
+ if data.isna(... |
mwaskom__seaborn-2860 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/categorical.py:_BarPlotter.__init__",
"seaborn/categorical.py:barplot",
"seaborn/categorical.py:countplot"
],
"edited_modules": [
"seaborn/categorical.py:_Bar... | mwaskom/seaborn | a48dc8f4df8d81ff8b50bdf26b6c094333f6ea8d | Barplot - cannot override width
**Version:**
0.11.1
**OS:**
Ubuntu
**Description:**
When calling `barplot(..., width=width)` a `TypeError` is raised from `matplotlib`:
`TypeError: bar() got multiple values for argument 'width'`
I think `barplot()` should either:
- raise before reaching `matplotlib` expla... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index 77b3b5b6..4711ecaa 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -51,6 +51,8 @@ Other updates
- |Enhancement| Example datasets are now stored in an OS-specific cache location (as determined by `appdirs`) rather than in t... |
mwaskom__seaborn-2863 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/axisgrid.py:jointplot"
],
"edited_modules": [
"seaborn/axisgrid.py:jointplot"
]
},
"file": "seaborn/axisgrid.py"
},
{
"changes": {
"added_entities... | mwaskom/seaborn | a48dc8f4df8d81ff8b50bdf26b6c094333f6ea8d | jointplot doesn't warn for ax= argument in seaborn 11.2
In seaborn 11.2, figure-level functions such as `catplot`, 'relplot', `displot` and `pairplot` issue a warning when an `ax=` parameter is passed:
```
UserWarning: catplot is a figure-level function and does not accept target axes. You may wish to try stripplot
... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index 77b3b5b6..6beda839 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -51,6 +51,8 @@ Other updates
- |Enhancement| Example datasets are now stored in an OS-specific cache location (as determined by `appdirs`) rather than in t... |
mwaskom__seaborn-2896 | [
{
"changes": {
"added_entities": [
"seaborn/_marks/area.py:AreaBase._postprocess_artist",
"seaborn/_marks/area.py:Area._postprocess_artist"
],
"added_modules": null,
"edited_entities": [
"seaborn/_marks/area.py:AreaBase._plot",
"seaborn/_marks/area.py:Area... | mwaskom/seaborn | 3c8447fc92e73b353202bacefc007784460b225e | Use extent clipping (and sticky edges) for Area mark
Give the `Area` mark the same behavior as we added to `Bar` in #2889 | diff --git a/doc/introduction.ipynb b/doc/introduction.ipynb
index 3fca871f..e6b32738 100644
--- a/doc/introduction.ipynb
+++ b/doc/introduction.ipynb
@@ -400,7 +400,7 @@
"cell_type": "raw",
"metadata": {},
"source": [
- "When you're ready to share or publish your work, you'll probably want to polish the... |
mwaskom__seaborn-2898 | [
{
"changes": {
"added_entities": [
"seaborn/_core/plot.py:Plot.limit",
"seaborn/_core/plot.py:Plotter._finalize_figure"
],
"added_modules": null,
"edited_entities": [
"seaborn/_core/plot.py:Plot.__init__",
"seaborn/_core/plot.py:Plot.plot",
"seabor... | mwaskom/seaborn | 3c8447fc92e73b353202bacefc007784460b225e | No easy way to set axis limits
This is a blocker for release.
Options:
- Use `norm` in the scale object (bleh)
- Have `Plot.limit` that works for any variable, working with the scale (interaction with `norm` needs definition)
- Another more general method (e.g. in `configure` that accepts `limits: dict[variable... | diff --git a/doc/introduction.ipynb b/doc/introduction.ipynb
index 3fca871f..e6b32738 100644
--- a/doc/introduction.ipynb
+++ b/doc/introduction.ipynb
@@ -400,7 +400,7 @@
"cell_type": "raw",
"metadata": {},
"source": [
- "When you're ready to share or publish your work, you'll probably want to polish the... |
mwaskom__seaborn-2915 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_compat.py:set_scale_obj"
],
"edited_modules": [
"seaborn/_compat.py:set_scale_obj"
]
},
"file": "seaborn/_compat.py"
},
{
"changes": {
"added_ent... | mwaskom/seaborn | 1524d4398d01a652c254d4c9d1c5c72a54a62d22 | Unexpected behaviour of ticks in next gen Seaborn
Hello,
Just found a potential bug in the next gen version of **seaborn**.
Expected behaviour: create a histogram with y-axis limits that go from 0 to 50.
Actual behaviour: limits of y-axis do not change.
Other possible reasons for this: I may be confused betwe... | diff --git a/doc/releases/v0.12.0.txt b/doc/releases/v0.12.0.txt
index bbeba0df..3550ce5d 100644
--- a/doc/releases/v0.12.0.txt
+++ b/doc/releases/v0.12.0.txt
@@ -94,6 +94,8 @@ Other updates
- |Fix| Improved robustness to numerical errors in :func:`kdeplot` (:pr:`2862`).
+- |Defaults| The `patch.facecolor` rc para... |
mwaskom__seaborn-3016 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/categorical.py:_PointPlotter.__init__",
"seaborn/categorical.py:_PointPlotter.draw_points",
"seaborn/categorical.py:pointplot"
],
"edited_modules": [
"seaborn... | mwaskom/seaborn | 54cab15bdacfaa05a88fbc5502a5b322d99f148e | `FacetGrid.map_dataframe` passes disallowed keyword arguments to `pointplot`
My code that used to work perfectly fine with 0.11.0 breaks with the new 0.12.0 release. The code creates a FacetGrid and then applies `pointplot()` to each of the cells as follows:
```python
...
g = sns.FacetGrid(df_fs, row="metric", col... | diff --git a/doc/whatsnew/v0.12.1.rst b/doc/whatsnew/v0.12.1.rst
index 6ba57d5b..f1ed1bb8 100644
--- a/doc/whatsnew/v0.12.1.rst
+++ b/doc/whatsnew/v0.12.1.rst
@@ -12,10 +12,12 @@ v0.12.1 (Unreleased)
- |Enhancement| Marks that sort along the orient axis (e.g. :class:`Line`) now use a stable algorithm (:pr:`3064`).
... |
mwaskom__seaborn-3056 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_marks/area.py:Band._standardize_coordinate_parameters"
],
"edited_modules": [
"seaborn/_marks/area.py:Band"
]
},
"file": "seaborn/_marks/area.py"
},
{
... | mwaskom/seaborn | 5386adc5a482ef3d0aef958ebf37d39ce0b06b88 | Consider having range mark derive min/max from data when not given
Marks that are based on min/max (i.e. Range or Band) assume that `{var}min`/`{var}max` variables are present. (Currently they fail with a pretty unhelpful error if not present, which we should generally fix). If those variables are not present, should t... | diff --git a/doc/_docstrings/objects.Band.ipynb b/doc/_docstrings/objects.Band.ipynb
index 5419a193..bcd19758 100644
--- a/doc/_docstrings/objects.Band.ipynb
+++ b/doc/_docstrings/objects.Band.ipynb
@@ -13,7 +13,7 @@
"source": [
"import seaborn.objects as so\n",
"from seaborn import load_dataset\n",
- ... |
mwaskom__seaborn-3369 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_base.py:VectorPlotter.assign_variables",
"seaborn/_base.py:VectorPlotter._assign_variables_longform"
],
"edited_modules": [
"seaborn/_base.py:VectorPlotter"
]
... | mwaskom/seaborn | af613f1db95e2ebc02810a985723f7fab19ff01c | seaborn.object: `TypeError: `x` given by both name and position` raised by polars and not by pandas
I am plotting a simple histogram from the result of a `.value_counts()`, so I just have two columns (see collapsible element)
```
┌───────────────────────────────────┬────────┐
│ source ┆ ... | diff --git a/seaborn/_base.py b/seaborn/_base.py
index 8b890252..a3861aed 100644
--- a/seaborn/_base.py
+++ b/seaborn/_base.py
@@ -11,14 +11,15 @@ import numpy as np
import pandas as pd
import matplotlib as mpl
-from ._decorators import (
+from seaborn._core.data import PlotData
+from seaborn._decorators import (
... |
mwaskom__seaborn-3440 | [
{
"changes": {
"added_entities": [
"seaborn/_base.py:VectorPlotter._get_scale_transforms"
],
"added_modules": null,
"edited_entities": [
"seaborn/_base.py:VectorPlotter.iter_data",
"seaborn/_base.py:VectorPlotter.comp_data",
"seaborn/_base.py:VectorPlotter... | mwaskom/seaborn | 23860365816440b050e9211e1c395a966de3c403 | Categorical scatter plots on symlog-scaled axis
Hi,
On the current dev version (eb2b5a2) and matplotlib 3.7.1, consider the following code that uses `stripplot` to draw two points on unscaled and symlog-scaled yaxis:
```python
import seaborn as sns
import matplotlib.pyplot as plt
x = [0.1,2]
y = [0.1,5]
fig,... | diff --git a/seaborn/_base.py b/seaborn/_base.py
index 5fbb282c..8b890252 100644
--- a/seaborn/_base.py
+++ b/seaborn/_base.py
@@ -1025,9 +1025,7 @@ class VectorPlotter:
)
# Reduce to the semantics used in this plot
- grouping_vars = [
- var for var in grouping_vars if var in s... |
mwaskom__seaborn-3451 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/relational.py:relplot"
],
"edited_modules": [
"seaborn/relational.py:relplot"
]
},
"file": "seaborn/relational.py"
}
] | mwaskom/seaborn | 3d3d715989d1a9cecc2b08fb23c695b6bb686754 | `relplot` `kind='scatter'` incompatible with `units` keyword argument
When calling `seaborn.relplot` with `kind='scatter' and passing a value for `units`, an error is raised:
```python
import seaborn as sns
from matplotlib import pyplot as plt
sns.set_theme(style="ticks")
dots = sns.load_dataset("dots")
... | diff --git a/seaborn/relational.py b/seaborn/relational.py
index e0af083d..67a5d4d9 100644
--- a/seaborn/relational.py
+++ b/seaborn/relational.py
@@ -837,9 +837,15 @@ def relplot(
kwargs.pop("ax")
# Use the full dataset to map the semantics
+ variables = dict(x=x, y=y, hue=hue, size=size, style=styl... |
mwaskom__seaborn-3452 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_base.py:HueMapping.__init__"
],
"edited_modules": [
"seaborn/_base.py:HueMapping"
]
},
"file": "seaborn/_base.py"
}
] | mwaskom/seaborn | 07711372d1b7bdd2dd30a1546bbcd1de55232165 | Warning "passing `palette` without assigning `hue`"
**Context**
Seems related to https://github.com/mwaskom/seaborn/issues/2429, but [the associated gist](https://gist.github.com/mwaskom/9937c53eeb8b9794a450bf1f20b03e2f) didn't help.
I aim to produce a `barplot` with the color varying on the continuous y-axis. It w... | diff --git a/seaborn/_base.py b/seaborn/_base.py
index 6a1c6083..f27f544d 100644
--- a/seaborn/_base.py
+++ b/seaborn/_base.py
@@ -108,6 +108,15 @@ class HueMapping(SemanticMapping):
data = plotter.plot_data.get("hue", pd.Series(dtype=float))
+ if isinstance(palette, np.ndarray):
+ msg = ... |
mwaskom__seaborn-3453 | [
{
"changes": {
"added_entities": [
"seaborn/regression.py:_RegressionPlotter._check_statsmodels"
],
"added_modules": null,
"edited_entities": [
"seaborn/regression.py:_RegressionPlotter.fit_regression"
],
"edited_modules": [
"seaborn/regression.py:_Reg... | mwaskom/seaborn | ce02525ef40f8291165d705343c7cda87981484a | `statsmodels` missing as a dependency
A normal `residplot` on the `mpg` data with `lowess=True` doesn't currently work, because `statsmodels` doesn't exist as a dependency. This is with a fresh `pip install --upgrade seaborn`.
```
---------------------------------------------------------------------------
ModuleNotF... | diff --git a/seaborn/regression.py b/seaborn/regression.py
index c6b81a17..5a16fc96 100644
--- a/seaborn/regression.py
+++ b/seaborn/regression.py
@@ -185,8 +185,18 @@ class _RegressionPlotter(_LinearPlotter):
return vals, points, cis
+ def _check_statsmodels(self):
+ """Check whether statsmodels... |
mwaskom__seaborn-3454 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/utils.py:move_legend"
],
"edited_modules": [
"seaborn/utils.py:move_legend"
]
},
"file": "seaborn/utils.py"
}
] | mwaskom/seaborn | 01fddcfa8724ff0e9aea475d9370051a0f5ef73c | Handle order in legend changes when labels are renamed
Here is a minimal example. In the second and third example the legend handles are reversed, which I think is unwanted behaviour:
```python
penguins = sns.load_dataset("penguins")
ax = sns.histplot(data=penguins, x="flipper_length_mm", hue="species")
```
![issu... | diff --git a/seaborn/utils.py b/seaborn/utils.py
index c5acc5e2..7cc804a0 100644
--- a/seaborn/utils.py
+++ b/seaborn/utils.py
@@ -460,6 +460,13 @@ def move_legend(obj, loc, **kwargs):
handles = get_legend_handles(old_legend)
labels = [t.get_text() for t in old_legend.get_texts()]
+ # Handle the case whe... |
mwaskom__seaborn-3458 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/_core/plot.py:Plotter._get_scale",
"seaborn/_core/plot.py:Plotter._setup_scales",
"seaborn/_core/plot.py:Plotter._finalize_figure"
],
"edited_modules": [
"sea... | mwaskom/seaborn | 082486d8505cee37416a855da65ff6349c7259e2 | Scale has no effect for Pair plots in next-gen interface
The `objects` interface looks great, in particular the ability to have combination pair and facet plots. However, I ran into a bug when attempting to log-scale an axis for a `pair`ed plot with `seaborn==0.12.0b2`.
**Expected behavior** (no log-scaling where no... | diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
index 6c25b01c..74efcb54 100644
--- a/.github/workflows/ci.yaml
+++ b/.github/workflows/ci.yaml
@@ -21,7 +21,7 @@ jobs:
build-docs:
runs-on: ubuntu-latest
steps:
- - uses: actions/checkout@c85c95e3d7251135ab7dc9ce3241c5835cc595a9 # v3.... |
mwaskom__seaborn-3467 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "examples/heat_scatter.py"
},
{
"changes": {
"added_entities": [
"seaborn/_base.py:VectorPlotter.add_legend_data",
"seaborn/_base... | mwaskom/seaborn | e71d95b661a069e85473ad347773d35317611486 | Legends don't represent additional visual properties
This is a meta issue replacing the following (exhaustive) list of reports:
- #2852
- #2005
- #1763
- #940
The basic issue is that artists in seaborn legends typically do not look exactly like artists in the plot in cases where additional matplotlib keyword a... | diff --git a/examples/heat_scatter.py b/examples/heat_scatter.py
index a7df620c..a8e5ee47 100644
--- a/examples/heat_scatter.py
+++ b/examples/heat_scatter.py
@@ -6,7 +6,6 @@ _thumb: .5, .5
"""
import seaborn as sns
-from seaborn._compat import get_legend_handles
sns.set_theme(style="whitegrid")
# Load the brai... |
mwaskom__seaborn-3540 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/categorical.py:catplot"
],
"edited_modules": [
"seaborn/categorical.py:catplot"
]
},
"file": "seaborn/categorical.py"
}
] | mwaskom/seaborn | 863539d71e281d88a93de64581827b166d9e2f22 | catplot with redundant hue assignment creates empty legend with title
```python
sns.catplot(tips, x="day", y="total_bill", hue="day", col="sex", row="smoker", kind="box", height=3)
```
Set `legend=False` to workaround,... | diff --git a/seaborn/categorical.py b/seaborn/categorical.py
index bb40d5d3..6b4d85da 100644
--- a/seaborn/categorical.py
+++ b/seaborn/categorical.py
@@ -409,12 +409,10 @@ class _CategoricalPlotter(VectorPlotter):
data[col] = inv(data[col])
def _configure_legend(self, ax, func, common_kws=N... |
mwaskom__seaborn-3547 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/categorical.py:catplot"
],
"edited_modules": [
"seaborn/categorical.py:catplot"
]
},
"file": "seaborn/categorical.py"
}
] | mwaskom/seaborn | 863539d71e281d88a93de64581827b166d9e2f22 | [BUG] Edge color with `catplot` with `kind=bar`
Hello,
When passing `edgecolor` to catplot for a bar, the argument doesn't reach the underlying `p.plot_bars` to generate the required output.
Currently there is a line
`edgecolor = p._complement_color(kwargs.pop("edgecolor", default), color, p._hue_map)`
is ... | diff --git a/seaborn/categorical.py b/seaborn/categorical.py
index bb40d5d3..ee537975 100644
--- a/seaborn/categorical.py
+++ b/seaborn/categorical.py
@@ -2830,7 +2830,11 @@ def catplot(
if saturation < 1:
color = desaturate(color, saturation)
- edgecolor = p._complement_color(kwargs.pop("edg... |
mwaskom__seaborn-3605 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"seaborn/categorical.py:_CategoricalPlotter._dodge"
],
"edited_modules": [
"seaborn/categorical.py:_CategoricalPlotter"
]
},
"file": "seaborn/categorical.py"
}
] | mwaskom/seaborn | 1617be03dc8f6c2977dbb31714e3ea9029ea3c9a | Boxplot errors when `dodge=True` without `hue`
Hello,
I want to report a bug when using the latest version of Seaborn. I checked with 0.12.2 there was no error.The bug is:
File "/mnt/c/Users/*****/Desktop/Gent_presentation_2023/1_Effect_of_Ti_addition/2-formation_energy/all_Tix_analysis/./boxplot.py", line 287, i... | diff --git a/seaborn/categorical.py b/seaborn/categorical.py
index 2e12141a..ab9f9680 100644
--- a/seaborn/categorical.py
+++ b/seaborn/categorical.py
@@ -392,6 +392,11 @@ class _CategoricalPlotter(VectorPlotter):
def _dodge(self, keys, data):
"""Apply a dodge transform to coordinates in place."""
+ ... |
mwclient__mwclient-289 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "examples/basic_edit.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"mwclient/clie... | mwclient/mwclient | cbf462f0f59a6a967b6d0d78d393d00fcc719883 | Site.blocks() only returns a single block
https://en.wikipedia.org/wiki/Special:Log?type=block&user=&page=MariaJaydHicky&wpdate=&tagfilter=&subtype= shows that User:MariaJaydHicky has had multiple blocks. But, the following code:
```
#!/usr/bin/env python ... | diff --git a/examples/basic_edit.py b/examples/basic_edit.py
index 43c4b00..a486047 100644
--- a/examples/basic_edit.py
+++ b/examples/basic_edit.py
@@ -36,7 +36,7 @@ text1 = u"""== [[Test page]] ==
This is a [[test]] page generated by [http://mwclient.sourceforge.org/ mwclient].
This test is done using the [[w:mw:AP... |
mwclient__mwclient-293 | [
{
"changes": {
"added_entities": [
"mwclient/client.py:Site.patrol"
],
"added_modules": null,
"edited_entities": [
"mwclient/client.py:Site.raw_call"
],
"edited_modules": [
"mwclient/client.py:Site"
]
},
"file": "mwclient/client.py"
}
] | mwclient/mwclient | 984dd51ef4e0a350bfc86654dc44276d1410bc2c | Patrol function
Hello, currently some function are commented out in the code :
```
# def block(self): TODO?
# def unblock: TODO?
# def patrol: TODO?
# def import: TODO?
```
I am very interested in the patrol function, do you plan on adding it ?
By the way, thanks for the library, it's really u... | diff --git a/mwclient/client.py b/mwclient/client.py
index f0c8f1b..1ea1dde 100644
--- a/mwclient/client.py
+++ b/mwclient/client.py
@@ -469,22 +469,23 @@ class Site(object):
ext=self.ext)
while True:
- try:
- args = {'fil... |
mwclient__mwclient-365 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"mwclient/listing.py:Category.__init__"
],
"edited_modules": [
"mwclient/listing.py:Category"
]
},
"file": "mwclient/listing.py"
},
{
"changes": {
"added_e... | mwclient/mwclient | 722fc47ddaa8b9a041ce4bc441125b50a65aa199 | When you create a page, mwclient still thinks it doesn't exist
Another one I found writing integration tests. To reproduce:
```
pg = site.pages["NonExistentPage"]
pg.exists
pg.edit("Hi I'm a new page", "create new page")
pg.exists
```
`pg.exists` will be `False` both times, when obviously it should be `True` the... | diff --git a/mwclient/listing.py b/mwclient/listing.py
index ef5780f..546d8c4 100644
--- a/mwclient/listing.py
+++ b/mwclient/listing.py
@@ -1,5 +1,5 @@
from typing import ( # noqa: F401
- Optional, Tuple, Any, Union, Iterator, Mapping, Iterable, Type
+ Optional, Tuple, Any, Union, Iterator, Mapping, Iterable, ... |
mwouts__itables-137 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"itables/sample_dfs.py:get_dict_of_test_dfs"
],
"edited_modules": [
"itables/sample_dfs.py:get_dict_of_test_dfs"
]
},
"file": "itables/sample_dfs.py"
}
] | mwouts/itables | c8316e69d9ea92b2079fe8dfb15107e8e065571e | Categorical index are sorted in the alphabetical order
Should be the categories order instead | diff --git a/docs/sample_dataframes.md b/docs/sample_dataframes.md
index 6b92dc4..7bcb355 100644
--- a/docs/sample_dataframes.md
+++ b/docs/sample_dataframes.md
@@ -78,6 +78,18 @@ show(dict_of_test_dfs["time"])
show(dict_of_test_dfs["object"])
```
+## ordered_categories
+
+```{code-cell}
+show(dict_of_test_dfs["ord... |
mwouts__itables-170 | [
{
"changes": {
"added_entities": [
"itables/datatables_format.py:convert_bigints_to_str"
],
"added_modules": [
"itables/datatables_format.py:convert_bigints_to_str"
],
"edited_entities": [
"itables/datatables_format.py:TableValuesEncoder.default",
"i... | mwouts/itables | a4a39f7463c975258ecef3ac8bc07d56ee421f3e | Not displaying large numbers (>16 digits) correctly
The issue: Large numbers only display first 16 digits, 17th digit is rounded (sometimes incorrectly) and the rest are 0s.
How to replicate:
```py
from itables import show
import pandas as pd
a = pd.DataFrame(
{
"Name": [
"Braund, Mr... | diff --git a/docs/changelog.md b/docs/changelog.md
index 880673a..cad8da5 100644
--- a/docs/changelog.md
+++ b/docs/changelog.md
@@ -1,15 +1,16 @@
ITables ChangeLog
=================
-1.5.2 (2023-03-??)
+1.5.2 (2023-03-26)
------------------
-**Added**
-- We have added a CI configuration where we test `itables` ... |
mwouts__itables-214 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"itables/javascript.py:_table_header"
],
"edited_modules": [
"itables/javascript.py:_table_header"
]
},
"file": "itables/javascript.py"
},
{
"changes": {
"... | mwouts/itables | 500d36c0009596c66e6fef88b59a29a9d219135f | html in column names
I was attempting to use itables to present units in the column name. I found that the HTML tags work well in cell values but not in table headers:
``` python
from itables import show
test_df = pd.DataFrame(
{"some_nm<sup>2</sup>": ["some val <sup>2</sup>", "<b>Bold Value</b>"]}
)
sh... | diff --git a/docs/changelog.md b/docs/changelog.md
index 1bec8a1..96145cf 100644
--- a/docs/changelog.md
+++ b/docs/changelog.md
@@ -1,6 +1,13 @@
ITables ChangeLog
=================
+1.6.3 (2023-12-10)
+------------------
+
+**Changed**
+- HTML in table columns is supported ([#213](https://github.com/mwouts/itables... |
mwouts__itables-324 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "src/itables/version.py"
}
] | mwouts/itables | a03d71c61aa7a509031d2bbdce94dd7a6642e1d2 | Deploy a sample Shiny app that uses ITables
This can be done using https://shiny.posit.co/py/docs/shinylive.html.
See also https://www.appsilon.com/post/shiny-for-python-deploy-github-pages | diff --git a/README.md b/README.md
index be1d8c5..b68df60 100644
--- a/README.md
+++ b/README.md
@@ -6,7 +6,7 @@
[](https://anaconda.org/conda-forge/itables)
[](https://pypi.python... |
mwouts__itables-352 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/itables/downsample.py:_downsample"
],
"edited_modules": [
"src/itables/downsample.py:_downsample"
]
},
"file": "src/itables/downsample.py"
},
{
"changes": {... | mwouts/itables | a3dfd990ab1081c1022c8adc3a1d0791d21072de | AssertionError because downsampled row count is odd
If the row selection is enabled and the table is downsampled, then the number of downsampled rows must be even. Otherwise `warn_if_selected_rows_are_not_visible` throws an assertion error.
I don't see a way to control the number of downsampled rows (except by using `... | diff --git a/LICENSE b/LICENSE
index 499aa22..3f76a9e 100644
--- a/LICENSE
+++ b/LICENSE
@@ -1,6 +1,6 @@
MIT License
-Copyright (c) 2019-2024 Marc Wouts
+Copyright (c) 2019-2025 Marc Wouts
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation f... |
mwouts__jupytext-1175 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/jupytext/cell_reader.py:MarkdownCellReader.find_cell_end",
"src/jupytext/cell_reader.py:DoublePercentScriptCellReader.find_cell_end"
],
"edited_modules": [
"src/jupytext/... | mwouts/jupytext | 405617f43f566de79aecde37863614715884e0e6 | Bibliography section becomes code
This is really to ask for advice about a problem I have with jupyter-book files.
For some files, I want to list ciations. The obvious way to do this, is to include a version of this Markdown cell at the end of the page (RMarkdown format) - see https://jupyterbook.org/en/stable/cont... | diff --git a/src/jupytext/cell_reader.py b/src/jupytext/cell_reader.py
index e4ea21c..738cd24 100644
--- a/src/jupytext/cell_reader.py
+++ b/src/jupytext/cell_reader.py
@@ -443,7 +443,9 @@ class MarkdownCellReader(BaseCellReader):
return i - 1, i, False
return i, i, False
... |
mwouts__jupytext-1180 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/jupytext/cell_reader.py:MarkdownCellReader.find_cell_end"
],
"edited_modules": [
"src/jupytext/cell_reader.py:MarkdownCellReader"
]
},
"file": "src/jupytext/cell_re... | mwouts/jupytext | 4a133b588bc569997b962ca98e038e91dbbf5aef | Bibliography section becomes code
This is really to ask for advice about a problem I have with jupyter-book files.
For some files, I want to list ciations. The obvious way to do this, is to include a version of this Markdown cell at the end of the page (RMarkdown format) - see https://jupyterbook.org/en/stable/cont... | diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 45e8a50..2498ce1 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -11,7 +11,10 @@ on:
paths-ignore:
- "CHANGELOG.md"
branches: [main]
- pull_request:
+ # We use pull_request_target rather than pull_request
+... |
mwouts__jupytext-1202 | [
{
"changes": {
"added_entities": [
"src/jupytext/contentsmanager.py:JupytextContentsManager._get_with_no_require_hash_argument",
"src/jupytext/contentsmanager.py:JupytextContentsManager._get_with_require_hash_argument"
],
"added_modules": null,
"edited_entities": [
... | mwouts/jupytext | f2e1b9d077f9b2abff5af109072a70b7a588a2ae | Incompatibility with jupyter_server 2.11.0
## Description
`jupyter_server` version 2.11.0 broke `JupytextContentsManager`, making jupytext unusable.
## Reproduce
1. Install both `jupytext` and `jupyter_server==2.11.0`
2. Start jupyterlab `jupyter lab` (the issue also occurs with notebook though)
3. Open the ... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 054f364..51e8de1 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,11 +1,12 @@
Jupytext ChangeLog
==================
-1.16.5-dev
-----------
+1.16.5 (2024-12-15)
+-------------------
**Fixed**
-- We have fixed a notebook corruption issue when using Jupytext with Ju... |
mwouts__jupytext-1238 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/jupytext/config.py:load_jupytext_configuration_file"
],
"edited_modules": [
"src/jupytext/config.py:load_jupytext_configuration_file"
]
},
"file": "src/jupytext/con... | mwouts/jupytext | 29a979fbe87cf2f09b5a961eadb0479d4067760d | Pair ipynb with files in subfolders one level down
I would like to pair `.ipynb` files with `.py` files according to this structure:
```
.
├── jupytext.toml
├── Alpha/
│ ├── notebooks_py/
│ │ └── notebook.py
│ └── notebook.ipynb
├── Beta/
│ ├── notebooks_py/
│ │ └── notebook.py
│ └── notebo... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index a577ff6..09e9b56 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -6,9 +6,11 @@ Jupytext ChangeLog
**Fixed**
- We have fixed a typo when `build_jupytext_contents_manager_class` can't be imported ([#1162](https://github.com/mwouts/jupytext/issues/1162))
+- Some dependenc... |
mwouts__jupytext-1366 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/jupytext/cli.py:jupytext_single_file",
"src/jupytext/cli.py:exec_command",
"src/jupytext/cli.py:pipe_notebook"
],
"edited_modules": [
"src/jupytext/cli.py:jupytex... | mwouts/jupytext | ef6afaaa032edea57c8867949b47335463a2321f | Quiet option ignored for --pipe option
Using `--pipe `always prints
```[jupytext] Executing python ...```
statements, ignoring the `-q` option. | diff --git a/CHANGELOG.md b/CHANGELOG.md
index aa68c85f..0a3e6312 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,11 +7,14 @@ Jupytext ChangeLog
**Changed**
- Jupytext's default contents manager is now derived from the asynchronous AsyncLargeFileManager. Thanks to [Darshan Poudel](https://github.com/Darshan808) fo... |
mwouts__jupytext-368 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"jupytext/cell_reader.py:MarkdownCellReader"
]
},
"file": "jupytext/cell_reader.py"
}
] | mwouts/jupytext | 4d6bef1c6cc78111ce1b3560b07965332c0c951c | .md round-tripping Broken on %%python3 magic
Just noticed this in a notebook that uses `%%python3` magic to demonstrate code execution in separate cells.
If I'm editing a markdown file in Jupyter notebook UI under Jupytext, if I have a code cell:
```
%%python3
a = 1
print(a)
```
if I save the file and then... | diff --git a/HISTORY.rst b/HISTORY.rst
index 9508d62..2cc996b 100644
--- a/HISTORY.rst
+++ b/HISTORY.rst
@@ -28,6 +28,7 @@ Release History
- Fixed an inconsistent round trip (code cell with ``"cat"`` being converted to a markdown cell) in the ``py:light`` format (#339)
- ``jupytext --test textfile.ext`` now really co... |
mwouts__jupytext-372 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cell_reader.py:BaseCellReader.__init__",
"jupytext/cell_reader.py:BaseCellReader.find_cell_content",
"jupytext/cell_reader.py:ScriptCellReader.uncomment_code_and_magics",
... | mwouts/jupytext | 20586e5cde0f3502478e5492ccdf04b96687ee00 | Escape IPython's magic help ("?" and "??")
Getting help in a code cell with something like `float?` or `float??` runs in the notebook but fails in the generated .py file. It would be nice to consider this IPython magic and to comment it out in the .py (which otherwise fails to run, or which makes the automatic convers... | diff --git a/HISTORY.rst b/HISTORY.rst
index aabe4f5..04c4a5e 100644
--- a/HISTORY.rst
+++ b/HISTORY.rst
@@ -15,6 +15,7 @@ Release History
- Markdown and raw cells can be quoted with triple quotes in the ``py:percent`` format. And Markdown cells can start with just ``# %% [md]`` (#305)
- The light format uses ``# + [... |
mwouts__jupytext-380 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "jupytext/header.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/metadata... | mwouts/jupytext | c189035ff88a02408a512115bd589b2c28606ba8 | Jupytext should not remove metadata from the YAML header in text files
The file `funnel-charts.md` contains a `plotly` entry in the YAML header, but a round trip in Jupytext [removes it](https://github.com/mwouts/plotly.py-docs/commit/335c5d1ceea263d36da2cfe895fcf3c6b901feeb#diff-79a654256c6b0d4336e702730725dc0c).
I... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 8194baf..832e40b 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -13,8 +13,9 @@
- The light format uses `# + [markdown]` rather than the previous `cell_type` metadata to identify markdown cells with metadata (#356)
- Explicit Markdown cells in the light format `# + [mark... |
mwouts__jupytext-420 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cli.py:jupytext_single_file"
],
"edited_modules": [
"jupytext/cli.py:jupytext_single_file"
]
},
"file": "jupytext/cli.py"
}
] | mwouts/jupytext | 65a47b0908a76e692c27b8c9679fe6a95ec8fe35 | Argument --test fails if run on different jupytext versions
`jupytext --test --to ipynb FILE.py` fails with:
```diff
[jupytext] Reading FILE.py
--- expected
+++ actual
@@ -5,7 +5,7 @@
# extension: .py
# format_name: light
# format_version: '1.5'
-# jupytext_version: 1.3.0
+# j... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index c33b2fb..df8a3d6 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -2,7 +2,8 @@
------------------
**Fixed**
-- Code cells in the Markdown format can contain triple backticks inside multiline strings (#419)
+- Code cells in the Markdown format can contain triple backtic... |
mwouts__jupytext-425 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cell_to_text.py:BaseCellExporter.__init__",
"jupytext/cell_to_text.py:LightScriptCellExporter.is_code"
],
"edited_modules": [
"jupytext/cell_to_text.py:BaseCellExpor... | mwouts/jupytext | 3a6512d8ee2141ff21b1f476b5d683267f4f8720 | how to get rid of jupytext_version in the notebook metadata
Hey there
as the tile has it, my use case would require to get rid of `jupytext_version` in my notebooks metadata
for some time I have been successfully running in a mode where `language_info` is stripped from said notebook metadata (actually it's kind o... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 60088d9..af4397d 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,11 +1,12 @@
-1.3.3 (2020-01-??)
+1.3.3 (2020-01-27)
------------------
**Added**
- Jupytext has a logo! Many thanks to Kyle Kelley for contributing the actual logo (#423), and to Chris Holdgraf for su... |
mwouts__jupytext-430 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cli.py:jupytext_single_file",
"jupytext/cli.py:pipe_notebook"
],
"edited_modules": [
"jupytext/cli.py:jupytext_single_file",
"jupytext/cli.py:pipe_notebook"
... | mwouts/jupytext | 0dec43d03be1144f042d28cb8f91ebe2378669d8 | Jupytext --to script uses the same destination extension for all the notebooks
Running `jupytext --to script NotebookExamples\*\*\*.ipynb` on [dotnet\interactive](https://github.com/dotnet/interactive/) only produces `.cs` files, when we would have expected `.cs`, `.fs` and `.ps1` files. | diff --git a/jupytext/cli.py b/jupytext/cli.py
index 2b250fe..dff62c1 100644
--- a/jupytext/cli.py
+++ b/jupytext/cli.py
@@ -315,7 +315,7 @@ def jupytext_single_file(nb_file, args, log):
# Compute actual extension when using script/auto, and update nb_dest if necessary
dest_fmt = args.to
if dest_fmt and ... |
mwouts__jupytext-439 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "jupytext/magics.py"
}
] | mwouts/jupytext | 7fd991f2dd402a900c40cb385e7bfc586790094e | exclamation mark not correctly handled
I am using
```bash
pip freeze | grep jupytext
jupytext==1.2.4
```
and the following MWE file (say `Untitled.md`)
```markdown
try:
!echo jo
except:
pass
```
(which is intended to be run as a jupyter notebook inside a jupyter server using the jupytext extension, ... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index e325459..90ac8aa 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,6 +7,7 @@
**Fixed**
- `jupytext --to script *.ipynb` now computes the script extension for each notebook (#428)
- Fix shebang handling for languages with non-# comments, by Jonas Bushart (#434)
+- Inde... |
mwouts__jupytext-470 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/formats.py:long_form_one_format",
"jupytext/formats.py:validate_one_format"
],
"edited_modules": [
"jupytext/formats.py:long_form_one_format",
"jupytext/form... | mwouts/jupytext | cf676abf3255b59c786e8632f9f7b639e0bc53ab | jupytext.write doesn't error if `fmt` is unknown, but the output file has a known extension
Just playing around with MyST -> ipynb -> MyST right now. The ipynb syncing works beautifully! I love it
I am having a hard time getting MyST code cells to render as `ipynb` code cells.
E.g., this markdown:
````
---
j... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index fd5cfe3..45aa942 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -6,6 +6,7 @@
**Fixed**
- Fixed the CLI example for not commenting out magic commands: `--opt comment_magics=false`. In addition, most of the `jupytext` commands in `using-cli.md` are now tested! (#465)
+-... |
mwouts__jupytext-472 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/stringparser.py:StringParser.read_line"
],
"edited_modules": [
"jupytext/stringparser.py:StringParser"
]
},
"file": "jupytext/stringparser.py"
}
] | mwouts/jupytext | 271fa1cf8b17a8b3a62dccca8bb8124e755449a0 | Wrong cell separation when creating .ipynb from .py
Let's say I work in a notebook file, paired to a `.py` file, and write one function per cell.
When I re-generate the `.ipynb` notebook from the `.py` file I have noticed that some functions now live in the same cell.
This is best illustrated by the images below.... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 45aa942..f22230e 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,6 +7,7 @@
**Fixed**
- Fixed the CLI example for not commenting out magic commands: `--opt comment_magics=false`. In addition, most of the `jupytext` commands in `using-cli.md` are now tested! (#465)
- `... |
mwouts__jupytext-573 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "jupytext/config.py"
}
] | mwouts/jupytext | 69a75ba5d18eb35f457048058a07d924a19c2eeb | Jupytext's MyBinder link is broken
The MyBinder launch fails. Apparently it's trying to parse `jupytext.py` as a configuration file when converting the `get_started.md` notebook :smile:
+- Fixed MyBinder - `jupytext.py` is not a configuration file (#559, #567)
1.5.1 (2020-07-05)
diff --git a/jupy... |
mwouts__jupytext-581 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cell_reader.py:DoublePercentScriptCellReader.__init__"
],
"edited_modules": [
"jupytext/cell_reader.py:DoublePercentScriptCellReader"
]
},
"file": "jupytext/ce... | mwouts/jupytext | a8992b01db6d9c0133d8d3dc3175c597e8028f51 | Hide metadata header in markdown
Is it possible, or would it be possible to hide the metedata header added when reading and writing to markdown?
For example, this is the header on one markdown document:
```markdown
---
jupyter:
jupytext:
text_representation:
extension: .md
format_name: mar... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index eb0fa98..66fba58 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,10 +3,12 @@
**Added**
- Activated GitHub code scanning alerts
+- New option `hide_notebook_metadata` to encapsulate the notebook metadata in an HTML comment (#527)
**Changed**
- Install Jupytext fr... |
mwouts__jupytext-582 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cell_reader.py:DoublePercentScriptCellReader.__init__"
],
"edited_modules": [
"jupytext/cell_reader.py:DoublePercentScriptCellReader"
]
},
"file": "jupytext/ce... | mwouts/jupytext | a8992b01db6d9c0133d8d3dc3175c597e8028f51 | Black interferes with py:percent format in indented code blocks.
I am having an issue where py:percent notebooks that have cells divided within an if statement get destroyed by black when using --pipe black
```
# %%
if __name__ == '__main__':
print(1)
# %%
print(2)
```
gets reformatted into the f... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index eb0fa98..732c405 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,6 +7,7 @@
**Changed**
- Install Jupytext from source on MyBinder to avoid cache issues (#567)
- Skip the tests that execute a notebook on Windows to avoid timeout issues (#489)
+- The `# %%` cell marker... |
mwouts__jupytext-585 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cli.py:exec_command",
"jupytext/cli.py:pipe_notebook"
],
"edited_modules": [
"jupytext/cli.py:exec_command",
"jupytext/cli.py:pipe_notebook"
]
},
... | mwouts/jupytext | d3be2bf839c25e8ce5195bf42407b438910b9086 | Running isort on Jupytext notebooks represented as scripts break some cells
This is related to #446 - It would be great to be able to run `isort` easily on a Jupytext notebook, however ATM it does not work that well.
Indeed, `isort` seems to move the comments preceding an `import` together with the import. Thus, wh... | diff --git a/.github/workflows/continuous-integration-conda.yml b/.github/workflows/continuous-integration-conda.yml
index f779772..68d356b 100644
--- a/.github/workflows/continuous-integration-conda.yml
+++ b/.github/workflows/continuous-integration-conda.yml
@@ -60,6 +60,8 @@ jobs:
conda install mock --fre... |
mwouts__jupytext-588 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "jupytext/magics.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules"... | mwouts/jupytext | 213acee31cb2d36b8ad36aa80dcd0f49ab922e48 | Black has syntax error with valid iPython magic when using --pipe
To reproduce:
This occurs on `black, version 19.10b0` and 'jupytext==1.5.2'. When --sync a notebook to py:percent format using the following command:
```bash
jupytext --update-metadata '{"jupytext":{"notebook_metadata_filter":"all", "cell_metadata... | diff --git a/.github/workflows/continuous-integration-conda.yml b/.github/workflows/continuous-integration-conda.yml
index 68d356b..a16fa4f 100644
--- a/.github/workflows/continuous-integration-conda.yml
+++ b/.github/workflows/continuous-integration-conda.yml
@@ -65,7 +65,8 @@ jobs:
conda install autopep8 -... |
mwouts__jupytext-608 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cell_to_text.py:BaseCellExporter.__init__"
],
"edited_modules": [
"jupytext/cell_to_text.py:BaseCellExporter"
]
},
"file": "jupytext/cell_to_text.py"
},
{
... | mwouts/jupytext | 1f355fec4fa3a29b6d6a78f00dee27b05017d613 | configure magic conversion is seamless
%%configure magic code conversion is not seamless, for example:
```
%%configure -f
{"executorMemory": "3072M", "executorCores": 4, "numExecutors":10}
```
gets transformed to python code & r code
```
# %%configure -f
{"executorMemory": "3072M", "executorCores": 4, "numExe... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 95dfc5a..f65d2a0 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,10 +7,12 @@
- New option `root_level_metadata_as_raw_cell`. Set it to `False` if you don't want to see root level metadata
of R Markdown notebooks as a raw cell in Jupyter (#415)
- New option `doxygen_e... |
mwouts__jupytext-609 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cell_to_text.py:BaseCellExporter.__init__"
],
"edited_modules": [
"jupytext/cell_to_text.py:BaseCellExporter"
]
},
"file": "jupytext/cell_to_text.py"
},
{
... | mwouts/jupytext | 2cee128f047fcfd6626f3eb123eebee05c89e6e9 | Set-formats on fresh text file based on configuration
This is an extension of a related issue #485.
I would like to be able to set the format on a fresh text file or modify the text file based on the current configuration (local if available else global) without specifying the argument to `--set-formats`.
For ex... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 5cd3a5d..e32faed 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,8 +7,10 @@
- New option `root_level_metadata_as_raw_cell`. Set it to `False` if you don't want to see root level metadata
of R Markdown notebooks as a raw cell in Jupyter (#415)
- New option `doxygen_eq... |
mwouts__jupytext-612 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"jupytext/cli.py:parse_jupytext_args",
"jupytext/cli.py:jupytext",
"jupytext/cli.py:jupytext_single_file"
],
"edited_modules": [
"jupytext/cli.py:parse_jupytext_args",... | mwouts/jupytext | 6d64247188ec612a17f9b4570019a508a7f149a8 | Be able to specify --execute run_path from CLI
So I have some ipynb files that only work if run the root of my project, but there doesn't seem to be an easy way to specify that the run_path should be the CWD instead of the path of input path or output path of the arguments. The only way to get something like this behav... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 4dcc24b..b4b63aa 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,4 +1,4 @@
-1.6.0-dev (2020-08-??)
+1.6.0 (2020-08-??)
----------------------
**Added**
@@ -14,6 +14,7 @@ of R Markdown notebooks as a raw cell in Jupyter (#415)
- Warn if 'Include Metadata' is off whe... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.