instance_id stringlengths 10 57 | file_changes listlengths 1 15 | repo stringlengths 7 53 | base_commit stringlengths 40 40 | problem_statement stringlengths 11 52.5k | patch stringlengths 251 7.06M |
|---|---|---|---|---|---|
Parquery__icontract-168 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"icontract/_checkers.py:_find_self",
"icontract/_checkers.py:_decorate_with_invariants",
"icontract/_checkers.py:add_invariant_checks"
],
"edited_modules": [
"icontrac... | Parquery/icontract | cb64cef40abccd3b212ca14987244e71782ee146 | Invariant on subclass of generic Mapping produces ValueError
An `invariant` decorator on a subclass of a generic `typing.Mapping` class produces a `ValueError`. Using Python 3.8.5 and icontract 2.3.7.
Example file `foo.py`:
``` python
from icontract import invariant
from typing import Dict, Iterator, Mapping
... | diff --git a/README.rst b/README.rst
index 80615a0..927040a 100644
--- a/README.rst
+++ b/README.rst
@@ -164,7 +164,8 @@ We consider the following methods to be "public":
* All methods not prefixed with ``_``
* All magic methods (prefix ``__`` and suffix ``__``)
-Class methods can not observe the invariant since th... |
Parquery__icontract-170 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"icontract/_recompute.py:Visitor"
]
},
"file": "icontract/_recompute.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
... | Parquery/icontract | 38968d2d4b79f44522417f40e9d8cfd6b5762870 | Violating contract with f-string produces NotImplementedError
An f-string in a lambda expression in a contract produces a `NotImplementedError` from `incontract._recompute` when a call violates the contract. A call that conforms to the contract does not produce the error. Using Python 3.8.5 and icontract 2.3.7.
E... | diff --git a/icontract/_recompute.py b/icontract/_recompute.py
index 00faac1..0427994 100644
--- a/icontract/_recompute.py
+++ b/icontract/_recompute.py
@@ -88,6 +88,44 @@ class Visitor(ast.NodeVisitor):
self.recomputed_values[node] = node.value
return node.value
+ if sys.version_info >= ... |
Parquery__icontract-172 | [
{
"changes": {
"added_entities": [
"icontract/_checkers.py:_decorate_new_with_invariants"
],
"added_modules": [
"icontract/_checkers.py:_decorate_new_with_invariants"
],
"edited_entities": [
"icontract/_checkers.py:add_invariant_checks"
],
"edite... | Parquery/icontract | e23b0df674b18842f38a1da4e1835c9217c7c84a | Invariant on subclass of NamedTuple produces TypeError
An `invariant` decorator on a subclass of `typing.NamedTuple` produces a `TypeError`. Using Python 3.8.5 and icontract 2.3.7.
Example file `foo.py`:
``` python
from typing import NamedTuple
from icontract import invariant
@invariant(lambda self: self.fir... | diff --git a/icontract/_checkers.py b/icontract/_checkers.py
index 83fa17b..90d4a44 100644
--- a/icontract/_checkers.py
+++ b/icontract/_checkers.py
@@ -441,6 +441,32 @@ def _find_self(param_names: List[str], args: Tuple[Any, ...], kwargs: Dict[str,
return kwargs["self"]
+def _decorate_new_with_invariants(new_... |
Parquery__icontract-176 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"icontract/_checkers.py:_kwargs_from_call",
"icontract/_checkers.py:decorate_with_checker"
],
"edited_modules": [
"icontract/_checkers.py:_kwargs_from_call",
"icontrac... | Parquery/icontract | 021f478672e480372d277d45384e3e65d1639d1a | *args and **kwargs not supported
Given the following code snippet:
```py
from icontract import require
def test_args():
@require(lambda *args: args)
def args(*args, **kwargs):
pass
args(0, x=0)
def test_kwargs():
@require(lambda **kwargs: kwargs)
def args(*args, **kwargs):
... | diff --git a/README.rst b/README.rst
index 9fb69cb..db5af98 100644
--- a/README.rst
+++ b/README.rst
@@ -639,6 +639,78 @@ Here is an example of the error given as a callable:
If you left ``enabled`` argument to its default ``__debug__``, the contract will *not* be verified in
``-O`` mode.)
+Variable Positio... |
Parquery__icontract-187 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"icontract/_checkers.py:add_invariant_checks"
],
"edited_modules": [
"icontract/_checkers.py:add_invariant_checks"
]
},
"file": "icontract/_checkers.py"
}
] | Parquery/icontract | 8d7639edb5fe2bb305e214203dc2fb8b3207fa9d | KeyError in contract caused by staticmethod and class invariant
```Python
from icontract import invariant
@invariant(lambda self: all(" " not in part for part in self.parts))
class ID:
def __init__(self, identifier: str) -> None:
self.parts = identifier.split(self.separator())
@staticmethod
... | diff --git a/README.rst b/README.rst
index d5660c1..08b5f1f 100644
--- a/README.rst
+++ b/README.rst
@@ -29,8 +29,9 @@ It also gives a base for a flourishing of a wider ecosystem:
`Hypothesis <https://hypothesis.readthedocs.io/en/latest/>`_ strategies based on the contracts,
* together with IDE integrations suc... |
Parquery__icontract-292 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "icontract/__init__.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"icontract/_che... | Parquery/icontract | 8edda0dd0a5c38977e4becb1502a9b9e7cd36524 | Feature request: immediate invariant evaluation.
Hi,
Very much taken by your library's functionality: much appreciated!
I would like to request an (perhaps optional?) feature for immediate evaluation of invariants (optional because, no doubt, this incurs a runtime penalty).
At the moment, as per [the documenta... | diff --git a/docs/source/api.rst b/docs/source/api.rst
index ed55e79..06e81de 100644
--- a/docs/source/api.rst
+++ b/docs/source/api.rst
@@ -45,3 +45,7 @@ DBC
ViolationError
--------------
.. autoclass:: ViolationError
+
+InvariantCheckEvent
+-------------------
+.. autoclass:: InvariantCheckEvent
\ No newline at en... |
Parquery__icontract-297 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"icontract/_checkers.py:add_invariant_checks"
],
"edited_modules": [
"icontract/_checkers.py:add_invariant_checks"
]
},
"file": "icontract/_checkers.py"
},
{
"ch... | Parquery/icontract | 577b5031e0542d4960745051b8138b1a861b1bd2 | Invariant of a subclass applies to its base
Invariants of subclasses affect their base classes, as well as sibling classes.
Here is a example to reproduce the problem:
```
from icontract import invariant
@invariant(lambda: True)
class Base:
pass
@invariant(lambda: False)
class Derived(Base):
pass... | diff --git a/icontract/_checkers.py b/icontract/_checkers.py
index efb445f..5e18a67 100644
--- a/icontract/_checkers.py
+++ b/icontract/_checkers.py
@@ -1213,7 +1213,7 @@ def add_invariant_checks(cls: ClassT) -> None:
# We need to ignore __repr__ to prevent endless loops when generating error messages.
... |
Parquery__icontract-94 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"icontract/_checkers.py:_walk_decorator_stack",
"icontract/_checkers.py:find_checker",
"icontract/_checkers.py:_Old.__getattr__",
"icontract/_checkers.py:decorate_with_checker",
... | Parquery/icontract | 5fec74799dfbd7813d86a90a2dba79ba78a312cf | require decorator removes type annotations for mypy
```
$ cat ic.py
from icontract import require
@require(lambda x: x > 0)
def f1(x: int): return x
def f2(x: int): return 0
f1("this is wrong")
f2("this is too")
$ mypy ic.py
ic.py:9: error: Argument 1 to "f2" has incompatible type "str"... | diff --git a/icontract/_checkers.py b/icontract/_checkers.py
index 3e7e6d6..30ab186 100644
--- a/icontract/_checkers.py
+++ b/icontract/_checkers.py
@@ -4,6 +4,7 @@ import inspect
from typing import Callable, Any, Iterable, Optional, Tuple, List, Mapping, MutableMapping, Dict
import icontract._represent
+from icont... |
Parquery__pyicontract-lint-25 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"icontract_lint/__init__.py:output_verbose"
],
"edited_modules": [
"icontract_lint/__init__.py:output_verbose"
]
},
"file": "icontract_lint/__init__.py"
},
{
"ch... | Parquery/pyicontract-lint | 388bc70a37d046379f0496f6d3eed7b33d5dcdc0 | Running pyicontract-lint without linting errors should notify success
Hi @mristin , it's me again :)
Just an enhancement proposal: when I got the package to run I had no linting errors and therefore the package would not give any output, even in `--verbose` mode. I had to run it with `--verbose json` mode to get the f... | diff --git a/icontract_lint/__init__.py b/icontract_lint/__init__.py
index b35a405..8639113 100644
--- a/icontract_lint/__init__.py
+++ b/icontract_lint/__init__.py
@@ -2,6 +2,7 @@
import collections
import enum
import json
+import os
import pathlib
import re
import sys
@@ -589,9 +590,10 @@ def output_verbose(err... |
Parquery__pyicontract-lint-28 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"icontract_lint/__init__.py:_LintVisitor._infer_decorator",
"icontract_lint/__init__.py:_LintVisitor.visit_FunctionDef"
],
"edited_modules": [
"icontract_lint/__init__.py:_Lin... | Parquery/pyicontract-lint | 76ece692dac02dd926a5c1c30fd5933899ffeefc | Error linting file w/o icontract
I'm trying out icontract and this linter. I get a fatal error in [this file](https://github.com/pymor/pymor/blob/contracts_type-hints/src/pymor/algorithms/rules.py)
[pip freeze output](https://github.com/Parquery/pyicontract-lint/files/5429910/freeze.txt)
```
pyicontract-lint ./src... | diff --git a/icontract_lint/__init__.py b/icontract_lint/__init__.py
index 8639113..9dced7a 100644
--- a/icontract_lint/__init__.py
+++ b/icontract_lint/__init__.py
@@ -351,25 +351,6 @@ class _LintVisitor(_AstroidVisitor):
else:
raise NotImplementedError("Unhandled pytype: {}".format(pytype))
- ... |
Parquery__pyicontract-lint-35 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"icontract_lint/__init__.py:_LintVisitor._verify_snapshot_decorator"
],
"edited_modules": [
"icontract_lint/__init__.py:ErrorID",
"icontract_lint/__init__.py:_LintVisitor"
... | Parquery/pyicontract-lint | ceacf96c6a59173b0f9b0611403c7f6315377963 | Snapshot capture function expects at most one argument
The docs show how you can use snapshots to capture multiple arguments and combine them into one set. However when I try the same idea the code runs without error, but the linter throws the error:
```Snapshot capture function expects at most one argument, but got... | diff --git a/icontract_lint/__init__.py b/icontract_lint/__init__.py
index 0b9a53d..d4f2312 100644
--- a/icontract_lint/__init__.py
+++ b/icontract_lint/__init__.py
@@ -35,6 +35,7 @@ class ErrorID(enum.Enum):
SNAPSHOT_INVALID_ARG = "snapshot-invalid-arg"
SNAPSHOT_WO_CAPTURE = "snapshot-wo-capture"
SNAPSH... |
Parquery__pylddwrap-13 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"lddwrap/__init__.py:_cmd_output_parser"
],
"edited_modules": [
"lddwrap/__init__.py:_cmd_output_parser"
]
},
"file": "lddwrap/__init__.py"
}
] | Parquery/pylddwrap | b13a44564ec9cee8f623c5a26d888dfd8fa26ca8 | pylddwrap 1.1.0 fails to handle statically linked libraries
I have noticed that with the latest release of 1.1.0, the `lddwrap.list_dependencies` fails when using it on a statically linked library:
```
my_static_lib.so:
statically linked
```
with the error message:
> RuntimeError: Unexpected mem ad... | diff --git a/lddwrap/__init__.py b/lddwrap/__init__.py
index d1a2d87..520bc07 100644
--- a/lddwrap/__init__.py
+++ b/lddwrap/__init__.py
@@ -252,10 +252,18 @@ def _cmd_output_parser(cmd_out: str) -> List[Dependency]:
"""
dependencies = [] # type: List[Dependency]
- for line in [
- line.strip(... |
Parquery__swagger-to-141 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"swagger_to/intermediate.py:_recursively_strip_descriptions"
],
"edited_modules": [
"swagger_to/intermediate.py:_recursively_strip_descriptions"
]
},
"file": "swagger_to... | Parquery/swagger-to | d0427c9f56e0a30a04e0777eb874954c99f1c90a | ValueError: Expected the value in a schema to be a string, but got: <class 'swagger_to.swagger.RawDict'>
if definitions properties has name with description, will cause this issue
```
DeviceDefineInfoRes:
type: object
discriminator: ''
properties:
createPerson:
type: string
cre... | diff --git a/swagger_to/intermediate.py b/swagger_to/intermediate.py
index c4dc496..8a26b91 100644
--- a/swagger_to/intermediate.py
+++ b/swagger_to/intermediate.py
@@ -432,12 +432,7 @@ def _recursively_strip_descriptions(schema_dict: MutableMapping[str, Any]) -> Mu
new_schema_dict = collections.OrderedDict() # t... |
Parquery__temppathlib-12 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"temppathlib/__init__.py:TmpDirIfNecessary.__init__",
"temppathlib/__init__.py:TmpDirIfNecessary.__enter__"
],
"edited_modules": [
"temppathlib/__init__.py:TmpDirIfNecessary"
... | Parquery/temppathlib | 21fd2b96fb2fb13c4e64d5bf2783327b11bafe4e | Support `prefix` option also with `TmpDirIfNecessary`?
Maybe `TmpDirIfNecessary` should also support the `prefix` option, to give a temporary directory a certain prefix (if no directory is provided already? | diff --git a/pylint.rc b/pylint.rc
index a70a9ba..9ecb8f0 100644
--- a/pylint.rc
+++ b/pylint.rc
@@ -7,5 +7,5 @@ generated-members=bottle\.request\.forms\.decode,bottle\.request\.query\.decode
max-line-length=120
[MESSAGES CONTROL]
-disable=too-few-public-methods,abstract-class-little-used,len-as-condition,bad-cont... |
PaulSchweizer__flowpipe-127 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"flowpipe/node.py:FunctionNode.__call__",
"flowpipe/node.py:FunctionNode._initialize"
],
"edited_modules": [
"flowpipe/node.py:FunctionNode"
]
},
"file": "flowpi... | PaulSchweizer/flowpipe | 06cade8408791fde0ab422c19d5d8e73facbc234 | Add sub output plugs through Node decorator
This should be made possible:
```python
@Node(outputs=["out.a", "out.b"])
MyNode():
pass
```
Resulting in a node like this:
```
+-----------+
| MyNode |
+-----------+
| out %
| out.a o
| out.b o
+-----------+
``` | diff --git a/flowpipe/node.py b/flowpipe/node.py
index 7fc825d..a9671e9 100644
--- a/flowpipe/node.py
+++ b/flowpipe/node.py
@@ -436,8 +436,13 @@ class FunctionNode(INode):
metadata = copy.deepcopy(self.metadata)
metadata.update(kwargs.pop("metadata", {}))
graph = kwargs.pop('graph', 'default... |
PedalPi__PluginsManager-11 | [
{
"changes": {
"added_entities": [
"pluginsmanager/mod_host/mod_host.py:ModHost.__del__",
"pluginsmanager/mod_host/mod_host.py:ModHost._remove_pedalboard"
],
"added_modules": null,
"edited_entities": [
"pluginsmanager/mod_host/mod_host.py:ModHost.on_current_pedalb... | PedalPi/PluginsManager | 749de55874f446519f7ebd01aacef38d1b810bb0 | Connections with sys_effect doesn't work
For test https://gist.github.com/SrMouraSilva/f7a3904f3984bcaec7e15c60039bc3c3
# Error 1
## Description
```python
> sys_effect.outputs[0].connect(reverb.inputs[0])
Traceback (most recent call last):
File "<input>", line 1, in <module>
File "/home/paulo/PycharmProj... | diff --git a/Readme.rst b/Readme.rst
index 4502fd9..b6ebb43 100644
--- a/Readme.rst
+++ b/Readme.rst
@@ -136,10 +136,7 @@ Connecting *mode one*:
.. code-block:: python
- # For connect output system effects, use
- pedalboard.connections.append(Connection(sys_effect.outputs[0], reverb.inputs[0]))
- # Instea... |
PedestrianDynamics__PedPy-162 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pedpy/methods/velocity_calculator.py:compute_mean_velocity_per_frame",
"pedpy/methods/velocity_calculator.py:compute_voronoi_velocity",
"pedpy/methods/velocity_calculator.py:compute_pass... | PedestrianDynamics/PedPy | c67fc318d407fcec8bf718de500cce143682c3fb | Compute the individual velocity outside the mean functions
Same procedure as for the individual Voronoi polygons, it makes more sense to compute these data beforehand and then pass it to the mean functions to avoid unnecessary computations. | diff --git a/jpsreport.ipynb b/jpsreport.ipynb
index 5549b13..0f4a888 100644
--- a/jpsreport.ipynb
+++ b/jpsreport.ipynb
@@ -490,12 +490,16 @@
"mean_area_speeds = {}\n",
"\n",
"for name, trajectory in trajectories.items():\n",
- " mean_area_speed, individual_speed_area = compute_mean_velocity_per_f... |
PedestrianDynamics__PedPy-249 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "pedpy/__init__.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pedpy/io/trajector... | PedestrianDynamics/PedPy | 136146bd80f0f9dd7a638b9854541de092abdc13 | Better error handling for jupedsim sqlite file import
Add checks to verify if the file is in the expected format and give understandable feedback to the user | diff --git a/pedpy/__init__.py b/pedpy/__init__.py
index df8ecda..b105c16 100644
--- a/pedpy/__init__.py
+++ b/pedpy/__init__.py
@@ -67,11 +67,13 @@ __all__ = [
"MeasurementLine",
"WalkableArea",
"TrajectoryData",
+ "LoadTrajectoryError",
"TrajectoryUnit",
"load_trajectory",
"load_traje... |
PedestrianDynamics__PedPy-278 | [
{
"changes": {
"added_entities": [
"pedpy/data/geometry.py:_polygon_from_wkt",
"pedpy/data/geometry.py:_polygon_from_shapely",
"pedpy/data/geometry.py:_polygon_from_coordinates"
],
"added_modules": [
"pedpy/data/geometry.py:_polygon_from_wkt",
"pedpy/dat... | PedestrianDynamics/PedPy | 7954f4954c8701d20ed5a966b21acfcd86eefa74 | Create WalkableArea from GeometryCollection
Currently `WalkableArea`s can only be created from `shapely.Polygon`-types and their wkt representation. As JuPedSim uses `shapely.GeometryCollection` as their geometry exchange format, including such types, would make the usage in simulation contexts easier.
**GeometryCol... | diff --git a/pedpy/data/geometry.py b/pedpy/data/geometry.py
index dcedfbc..0541438 100644
--- a/pedpy/data/geometry.py
+++ b/pedpy/data/geometry.py
@@ -1,7 +1,8 @@
"""Module handling the geometrical environment of the analysis."""
from dataclasses import dataclass
-from typing import Any, List, Optional
+from numb... |
PedestrianDynamics__PedPy-376 | [
{
"changes": {
"added_entities": [
"pedpy/methods/method_utils.py:_compute_crossing_frames"
],
"added_modules": [
"pedpy/methods/method_utils.py:_compute_crossing_frames"
],
"edited_entities": [
"pedpy/methods/method_utils.py:compute_frame_range_in_area",
... | PedestrianDynamics/PedPy | daba718f4a771a7164da08cd09878a201513208e | compute_crossing_frames may count multiple crossings when movement ends on line
Opposite of what the definition of the method (description and code comment) says, when the movement of a pedestrian ends on the line it counts as crossed.
**To reproduce:**
```python
import numpy as np
import pandas as pd
from ped... | diff --git a/pedpy/methods/method_utils.py b/pedpy/methods/method_utils.py
index 59e2cca..722052a 100644
--- a/pedpy/methods/method_utils.py
+++ b/pedpy/methods/method_utils.py
@@ -6,7 +6,7 @@ import logging
from collections import defaultdict
from dataclasses import dataclass
from enum import Enum, auto
-from typin... |
PennChopMicrobiomeProgram__PhylogeneticProfiler-4 | [
{
"changes": {
"added_entities": [
"phyloprofilerlib/main.py:Metaphlan.revise_output"
],
"added_modules": null,
"edited_entities": [
"phyloprofilerlib/main.py:Metaphlan.run"
],
"edited_modules": [
"phyloprofilerlib/main.py:Metaphlan"
]
},
... | PennChopMicrobiomeProgram/PhylogeneticProfiler | fc368fcef164305e45513d27d592f0118229ec0e | Sum of proportions should equal 1
MetaPhlan prints the proportions for each level of the taxonomy, which results in the sum of proportions being (number of ranks) * 100. This kind of output is difficult for us to use downstream. It would be better for us to have the full taxonomic assignment at the species level only... | diff --git a/phyloprofilerlib/main.py b/phyloprofilerlib/main.py
index c7ba473..4105c14 100644
--- a/phyloprofilerlib/main.py
+++ b/phyloprofilerlib/main.py
@@ -52,7 +52,25 @@ class Metaphlan(object):
def run(self, R1, R2, out_dir):
command = self.make_command(R1, R2)
- subprocess.check_call(comm... |
PennChopMicrobiomeProgram__illqc-17 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"illqclib/main.py:Trimmomatic.make_command"
],
"edited_modules": [
"illqclib/main.py:Trimmomatic"
]
},
"file": "illqclib/main.py"
}
] | PennChopMicrobiomeProgram/illqc | bc504d4c93300db446ab7b70cb0660f682d07687 | Cannot configure setting for sliding window
Python needs a tuple value for this setting, but JSON does not support tuple types. Suggest converting to value tuple before line 70:
https://github.com/PennChopMicrobiomeProgram/illqc/blob/master/illqclib/main.py#L70 | diff --git a/illqclib/main.py b/illqclib/main.py
index e8503bf..396d282 100644
--- a/illqclib/main.py
+++ b/illqclib/main.py
@@ -67,7 +67,7 @@ class Trimmomatic(object):
"ILLUMINACLIP:%s:2:30:10:8:true" % self._adapter_fp,
"LEADING:%d" % self.config["leading"],
"TRAILING:%d" % sel... |
PennLINC__CuBIDS-382 | [
{
"changes": {
"added_entities": [
"cubids/cubids.py:get_entity_value",
"cubids/cubids.py:build_path"
],
"added_modules": [
"cubids/cubids.py:get_entity_value",
"cubids/cubids.py:build_path"
],
"edited_entities": [
"cubids/cubids.py:CuBIDS.ch... | PennLINC/CuBIDS | 61fed301bec324d36449dfa2bcef0c4dd3698a41 | `cubids-apply` adds extra leading zero to run entity
In my case, it tried to rename `sub-03_ses-1_task-rest_acq-multiecho_run-02_echo-1_part-mag_bold.nii.gz` to `sub-03_ses-1_task-rest_acq-multiechoVARIANTNumVolumes_run-002_bold.nii.gz`. Note the shift from one leading zero to two.
This seems to be due to this secti... | diff --git a/cubids/cubids.py b/cubids/cubids.py
index 0959919..158e97d 100644
--- a/cubids/cubids.py
+++ b/cubids/cubids.py
@@ -469,55 +469,19 @@ class CuBIDS(object):
-----
This is the function I need to spend the most time on, since it has entities hardcoded.
"""
+ new_path = build_... |
PennLINC__CuBIDS-432 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cubids/utils.py:assign_variants"
],
"edited_modules": [
"cubids/utils.py:assign_variants"
]
},
"file": "cubids/utils.py"
}
] | PennLINC/CuBIDS | 6e8726ec17f45e83e5997c5defb8d2d8ecbdc78b | Include variant cluster number/centroid or value in variant renaming recommendations
## Summary
<!--What would you like changed/added and why?-->
I think it would be informative to include the variant's value in the proposed acquisition value.
For example, if you had two echo time variants: one with EchoTimes ranging f... | diff --git a/cubids/utils.py b/cubids/utils.py
index 4eeefb2..a6be9b4 100644
--- a/cubids/utils.py
+++ b/cubids/utils.py
@@ -485,6 +485,10 @@ def format_params(param_group_df, config, modality):
``'derived_params'`` is a dictionary of dictionaries, where keys are modalities.
The modality-wise dictionary's key... |
PennLINC__CuBIDS-438 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cubids/utils.py:assign_variants"
],
"edited_modules": [
"cubids/utils.py:assign_variants"
]
},
"file": "cubids/utils.py"
}
] | PennLINC/CuBIDS | df31e94bdd3d76a7d096e4f91439ebbe7e668594 | Clarify difference between cluster numbers and actual values in variant names
Variant acquisition fields now have values in them since #432 was merged, which is great, but it made me realize that it might not be clear that some of the values are cluster numbers and others are actual values. For example, we might see `a... | diff --git a/cubids/utils.py b/cubids/utils.py
index ee9bb77..c0f1ab5 100644
--- a/cubids/utils.py
+++ b/cubids/utils.py
@@ -951,7 +951,7 @@ def assign_variants(summary, rename_cols):
cluster_val = 0
if cluster_val != dom_entity_set[f"Cluster_{col}"]:
- ... |
PennLINC__CuBIDS-442 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cubids/utils.py:_entities_to_entity_set",
"cubids/utils.py:assign_variants"
],
"edited_modules": [
"cubids/utils.py:_entities_to_entity_set",
"cubids/utils.py:assign_... | PennLINC/CuBIDS | 41c80c4b368ed3e909d4c02b12d7fcf672831bd8 | Place datatype at beginning, and acquisition at end, of entity strings
## Summary
<!--What would you like changed/added and why?-->
Request by @sattertt to improve readability of the TSVs.
| diff --git a/cubids/utils.py b/cubids/utils.py
index 3f1e416..128b0fa 100644
--- a/cubids/utils.py
+++ b/cubids/utils.py
@@ -112,8 +112,35 @@ def _entities_to_entity_set(entities):
This is a set of entities to ignore in the entity set.
The constant may be modified by the CuBIDS class, which will remove "sessi... |
PennLINC__xcp_d-1065 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"xcp_d/cli/combineqc.py:main"
],
"edited_modules": [
"xcp_d/cli/combineqc.py:main"
]
},
"file": "xcp_d/cli/combineqc.py"
},
{
"changes": {
"added_entities"... | PennLINC/xcp_d | 3563e9e8605553bd345636033237e601e77f6de9 | Rename ALFF and ReHo outputs based on BEP 012
## Summary
<!--What would you like changed/added and why?-->
In BEP 012 (see https://github.com/bids-standard/bids-specification/pull/519), they use `_stat-<reho|alff>_boldmap` instead of `_<alff|reho>`.
| diff --git a/docs/outputs.rst b/docs/outputs.rst
index c7984bc..986bcdb 100644
--- a/docs/outputs.rst
+++ b/docs/outputs.rst
@@ -9,23 +9,25 @@ The *XCP-D* outputs are written out in BIDS format and consist of three main pa
.. admonition:: A note on BIDS compliance
- *XCP-D* attempts to follow the BIDS specifica... |
PennLINC__xcp_d-1073 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"xcp_d/utils/atlas.py:copy_atlas"
],
"edited_modules": [
"xcp_d/utils/atlas.py:copy_atlas"
]
},
"file": "xcp_d/utils/atlas.py"
},
{
"changes": {
"added_ent... | PennLINC/xcp_d | 6ed41b0505f575237faba7bdc14bcf41b1f3a8ea | Error in finding parcellation atlases when running pipeline in parallel
## Summary
<!--What is the nature of the bug?-->
Now the output atlases folder is moved out of the subject directory, which is very reasonable. But for some unknown reason, when running pipeline for several subjects in parallel, some sub-tasks ... | diff --git a/xcp_d/utils/atlas.py b/xcp_d/utils/atlas.py
index 3e39d5a..561973b 100644
--- a/xcp_d/utils/atlas.py
+++ b/xcp_d/utils/atlas.py
@@ -160,6 +160,24 @@ def get_atlas_cifti(atlas):
def copy_atlas(name_source, in_file, output_dir, atlas):
"""Copy atlas file to output directory.
+ Parameters
+ ----... |
PennLINC__xcp_d-1075 | [
{
"changes": {
"added_entities": [
"xcp_d/interfaces/bids.py:CopyAtlas._run_interface"
],
"added_modules": [
"xcp_d/interfaces/bids.py:_CopyAtlasInputSpec",
"xcp_d/interfaces/bids.py:_CopyAtlasOutputSpec",
"xcp_d/interfaces/bids.py:CopyAtlas"
],
"edi... | PennLINC/xcp_d | f9a597d3093609c37532c6e62c569dde39e0a974 | Processing native-resolution runs with different voxel sizes will fail
## Summary
<!--What is the nature of the bug?-->
When processing multiple runs in the same standard space (MNI152NLin2009cAsym) with the native BOLD resolution, if the different runs have different native resolutions (in this case, 1.625 x 1.625 x... | diff --git a/xcp_d/interfaces/bids.py b/xcp_d/interfaces/bids.py
index 06e1c18..bfdc4bc 100644
--- a/xcp_d/interfaces/bids.py
+++ b/xcp_d/interfaces/bids.py
@@ -1,8 +1,12 @@
"""Adapted interfaces from Niworkflows."""
+import os
+import shutil
from json import loads
from pathlib import Path
+import nibabel as nb
... |
PennLINC__xcp_d-1088 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"xcp_d/utils/bids.py:write_dataset_description",
"xcp_d/utils/bids.py:_make_xcpd_uri"
],
"edited_modules": [
"xcp_d/utils/bids.py:write_dataset_description",
"xcp_d/ut... | PennLINC/xcp_d | 9fe66035990564ef9b3fa5d95aa979b3c2273a16 | Replace `bids:xcp_d:` BIDS URIs with `bids::`
## Summary
<!--What would you like changed/added and why?-->
`bids::` is a protected case for the dataset in which the URI is defined (i.e., the XCP-D derivatives dataset).
| diff --git a/xcp_d/utils/bids.py b/xcp_d/utils/bids.py
index 0938f70..0e2b6c0 100644
--- a/xcp_d/utils/bids.py
+++ b/xcp_d/utils/bids.py
@@ -733,11 +733,6 @@ def write_dataset_description(fmri_dir, xcpd_dir, custom_confounds_folder=None):
dset_desc["DatasetLinks"]["preprocessed"] = str(fmri_dir)
- if "xcp_d... |
PennLINC__xcp_d-1114 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"xcp_d/interfaces/censoring.py:GenerateConfounds._run_interface"
],
"edited_modules": [
"xcp_d/interfaces/censoring.py:GenerateConfounds"
]
},
"file": "xcp_d/interfaces/... | PennLINC/xcp_d | d3487107f6efc58056d656c5ba3d89336e5fc59b | Modified motion filter parameters are not reflected in the boilerplate or metadata
## Summary
<!--What is the nature of the bug?-->
The function `motion_regression_filter` will automatically adjust the motion filter parameters `band_stop_min` and `band_stop_max` if either is above the Nyquist frequency for the data (... | diff --git a/xcp_d/interfaces/censoring.py b/xcp_d/interfaces/censoring.py
index 4532f78..05c4fb0 100644
--- a/xcp_d/interfaces/censoring.py
+++ b/xcp_d/interfaces/censoring.py
@@ -14,7 +14,12 @@ from nipype.interfaces.base import (
traits,
)
-from xcp_d.utils.confounds import _infer_dummy_scans, load_confound_... |
PennLINC__xcp_d-1172 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"xcp_d/cli/parser.py:_build_parser",
"xcp_d/cli/parser.py:_validate_parameters"
],
"edited_modules": [
"xcp_d/cli/parser.py:_build_parser",
"xcp_d/cli/parser.py:_valid... | PennLINC/xcp_d | 2f6f9b8939262490362173dc215db6d350d01ef5 | Filter number is not correct with the commond
## Summary
The filter number in the commond, CITATION, and json file is not equal.
## Additional details
<!--Please fill in the following details-->
- xcp_d version: v0.7.1rc5
- Docker version: None
- Singularity version: 1.3.0-1.el7
### What were you trying to d... | diff --git a/.versions.json b/.versions.json
index 5b7faa1..c8f6ec5 100644
--- a/.versions.json
+++ b/.versions.json
@@ -26,6 +26,8 @@
"0.6.0": "Temporal filtering may have reintroduced variance from nuisance regression.",
"0.6.1": "Temporal filtering may have reintroduced variance from nuisance regression.",
... |
PennLINC__xcp_d-1232 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"xcp_d/cli/parser.py:_build_parser",
"xcp_d/cli/parser.py:_validate_parameters"
],
"edited_modules": [
"xcp_d/cli/parser.py:_build_parser",
"xcp_d/cli/parser.py:_valid... | PennLINC/xcp_d | 8ca5fbca6ae3fa950efff441f0f35169401bc106 | Add `--mode none` option
## Summary
<!--What would you like changed/added and why?-->
Request from Damien Fair: support a "none" mode where lots of things are required and not set by the mode.
| diff --git a/docs/workflows.rst b/docs/workflows.rst
index 9c7425a..e38e862 100644
--- a/docs/workflows.rst
+++ b/docs/workflows.rst
@@ -35,6 +35,9 @@ based on recommended processing pipelines for different studies.
XCP-D can be run in one of three modes: ``linc``, ``abcd``, or ``hbcd``.
Each mode is designed by a di... |
PennLINC__xcp_d-1244 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"xcp_d/interfaces/nilearn.py:DenoiseCifti._run_interface",
"xcp_d/interfaces/nilearn.py:DenoiseNifti._run_interface"
],
"edited_modules": [
"xcp_d/interfaces/nilearn.py:Denois... | PennLINC/xcp_d | 84ee283db5d41240020368591ae95eeaa610fbca | Support voxel-wise regressors
## Summary
I'm looking forward to getting [`fMRIPost-rapidtide`](https://github.com/nipreps/fmripost-rapidtide) working, and that will produce voxel-wise regressors.
## Additional details
We'll need to modify the denoising function to loop over voxels. Nilearn has no plans to supp... | diff --git a/pyproject.toml b/pyproject.toml
index f2312c3..ea9e6e5 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -28,7 +28,7 @@ dependencies = [
"nibabel >= 3.2.1",
"nilearn == 0.10.4", # 0.10.2 raises error with compcor from fMRIPrep 23
"nipype ~= 1.8.5",
- "nireports ~= 23.2.1",
+ "nirepo... |
PennLINC__xcp_d-1300 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"xcp_d/cli/parser.py:_build_parser"
],
"edited_modules": [
"xcp_d/cli/parser.py:_build_parser"
]
},
"file": "xcp_d/cli/parser.py"
},
{
"changes": {
"added_... | PennLINC/xcp_d | e842748676a94f181d8281c4e281d497aa3c43d0 | Possible bug in DCANBoldProc that may or may not be relevant to XCP-D
@cindyhfls noticed a possible bug in our code base for DCANBoldProc. Our team is going to check it out soon. I wanted to share in case the issue is present in XCP-D as well!
See: https://github.com/DCAN-Labs/dcan_bold_processing/issues/28 | diff --git a/xcp_d/cli/parser.py b/xcp_d/cli/parser.py
index b229afe..1c97449 100644
--- a/xcp_d/cli/parser.py
+++ b/xcp_d/cli/parser.py
@@ -373,7 +373,15 @@ This parameter is used in conjunction with ``motion-filter-order`` and ``band-st
dest="motion_filter_order",
default=4,
type=int,
- ... |
PennLINC__xcp_d-1433 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"xcp_d/utils/bids.py:collect_data"
],
"edited_modules": [
"xcp_d/utils/bids.py:collect_data"
]
},
"file": "xcp_d/utils/bids.py"
}
] | PennLINC/xcp_d | d9ca3ade1438326d898a1b7cbffed00ee12e9483 | Native-space T2w is collected even when no T1w-space T2w is available
## Summary
<!--What is the nature of the bug?-->
Tim Hendrickson noticed that T2w images were being collected and used in the executive summary even when the T1w was the primary anatomical modality (i.e., transforms to standard spaces used the T1w, n... | diff --git a/xcp_d/utils/bids.py b/xcp_d/utils/bids.py
index e6cc6ff..eeeda7a 100644
--- a/xcp_d/utils/bids.py
+++ b/xcp_d/utils/bids.py
@@ -271,45 +271,51 @@ def collect_data(
raise FileNotFoundError('No T1w or T2w files found.')
elif t1w_files and t2w_files:
LOGGER.warning('Both T1w and T2w fou... |
PennLINC__xcp_d-782 | [
{
"changes": {
"added_entities": [
"xcp_d/cli/parser_utils.py:_restricted_float"
],
"added_modules": [
"xcp_d/cli/parser_utils.py:_restricted_float"
],
"edited_entities": null,
"edited_modules": null
},
"file": "xcp_d/cli/parser_utils.py"
},
{
... | PennLINC/xcp_d | 39f949ee09164e09527e680427121607f6d43d5d | Make coverage threshold configurable
## Summary
<!--What would you like changed/added and why?-->
In #757, we add a 50% coverage threshold and start to write out coverage files for each of the atlases. We want to allow users to set the coverage threshold themselves, so we need to make it a parameter that users can de... | diff --git a/xcp_d/cli/parser_utils.py b/xcp_d/cli/parser_utils.py
index 3591aad..04b876e 100644
--- a/xcp_d/cli/parser_utils.py
+++ b/xcp_d/cli/parser_utils.py
@@ -76,6 +76,19 @@ def _float_or_auto(string, is_parser=True):
return floatarg
+def _restricted_float(x):
+ """From https://stackoverflow.com/a/121... |
PennyLaneAI__pennylane-1168 | [
{
"changes": {
"added_entities": [
"pennylane/_device.py:Device.shot_vector"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"pennylane/_device.py:Device"
]
},
"file": "pennylane/_device.py"
}
] | PennyLaneAI/pennylane | 0021c3feecf16745c70418ea5444197731c7943f | Please expose device._shot_vector via public property
This is a features request: Please expose the shot vector via some public and documented property of the device. Thank you!
This is inspired by me needing to predict the output shape of certain QNodes and in case of a non trivial shot vector and all observables b... | diff --git a/pennylane/_device.py b/pennylane/_device.py
index b1697ef14..d07080323 100644
--- a/pennylane/_device.py
+++ b/pennylane/_device.py
@@ -264,6 +264,33 @@ class Device(abc.ABC):
"Shots must be a single non-negative integer or a sequence of non-negative integers."
)
+ @prope... |
PennyLaneAI__pennylane-1319 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"pennylane/devices/default_qubit.py:DefaultQubit"
]
},
"file": "pennylane/devices/default_qubit.py"
},
{
"changes": {
"added_entities": null,
... | PennyLaneAI/pennylane | b8ea0de26dbecdb67d8e08959d0cbd2c57f3ebb7 | [unitaryhack] Add the CPhase operation
*This issue has been tagged for contributions during [unitaryHACK](https://unitaryfund.github.io/unitaryhack/participating-projects.html)*
**Context**
We would like to define a new diagonal operation called `CPhase`, see [further details here](https://qiskit.org/documentation/... | diff --git a/.github/CHANGELOG.md b/.github/CHANGELOG.md
index 3aafaae7c..d457c9037 100644
--- a/.github/CHANGELOG.md
+++ b/.github/CHANGELOG.md
@@ -1,6 +1,8 @@
# Release 0.16.0-dev (development release)
<h3>New features since last release</h3>
+* Added CPhase operation as an alias for ControlledPhaseShift operatio... |
PennyLaneAI__pennylane-1320 | [
{
"changes": {
"added_entities": [
"pennylane/ops/qubit.py:Toffoli.decomposition"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"pennylane/ops/qubit.py:Toffoli"
]
},
"file": "pennylane/ops/qubit.py"
}
] | PennyLaneAI/pennylane | 6a2cf0a72303718b78abe4426822655b5db79b93 | [unitaryhack] Define decomposition for `qml.Toffoli`
*This issue has been tagged for contributions during [unitaryHACK](https://unitaryfund.github.io/unitaryhack/participating-projects.html)*
Each PennyLane operation defines a decomposition. The decomposition of an operation is an ordered list of other operations. A... | diff --git a/.github/CHANGELOG.md b/.github/CHANGELOG.md
index b15e59151..3aafaae7c 100644
--- a/.github/CHANGELOG.md
+++ b/.github/CHANGELOG.md
@@ -2,6 +2,9 @@
<h3>New features since last release</h3>
+* The `qml.Toffoli` operation now has a decomposition over elementary gates.
+ [(#1320)](https://github.com/Pe... |
PennyLaneAI__pennylane-1325 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/utils.py:inv"
],
"edited_modules": [
"pennylane/utils.py:inv"
]
},
"file": "pennylane/utils.py"
}
] | PennyLaneAI/pennylane | 9777f09ca265074531dde26e38c1322c72381c39 | [unitaryhack] Deprecate `qml.inv`
*This issue has been tagged for contributions during [unitaryHACK](https://unitaryfund.github.io/unitaryhack/participating-projects.html)*
Currently, PennyLane has two functions for inverting quantum operations:
* [`qml.inv()`](https://github.com/PennyLaneAI/pennylane/blob/4ece39... | diff --git a/.github/CHANGELOG.md b/.github/CHANGELOG.md
index 912f61439..b15e59151 100644
--- a/.github/CHANGELOG.md
+++ b/.github/CHANGELOG.md
@@ -159,6 +159,9 @@ random_mat2 = rng.standard_normal(3, requires_grad=False)
<h3>Improvements</h3>
+* The `qml.inv()` function is now deprecated with a warning to use th... |
PennyLaneAI__pennylane-1329 | [
{
"changes": {
"added_entities": [
"pennylane/ops/qubit.py:SWAP.decomposition"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"pennylane/ops/qubit.py:SWAP"
]
},
"file": "pennylane/ops/qubit.py"
}
] | PennyLaneAI/pennylane | 2107490ba0ea196b62656d89bff7bc5b8a4205a0 | [unitaryhack] Define decomposition for `qml.SWAP`
*This issue has been tagged for contributions during [unitaryHACK](https://unitaryfund.github.io/unitaryhack/participating-projects.html)*
Each PennyLane operation defines a decomposition. The decomposition of an operation is an ordered list of other operations. Appl... | diff --git a/.github/CHANGELOG.md b/.github/CHANGELOG.md
index 8e0e26687..912f61439 100644
--- a/.github/CHANGELOG.md
+++ b/.github/CHANGELOG.md
@@ -2,6 +2,8 @@
<h3>New features since last release</h3>
+* The `qml.SWAP` operation now has a decomposition over elementary gates. [(#1329)](https://github.com/PennyLan... |
PennyLaneAI__pennylane-1353 | [
{
"changes": {
"added_entities": [
"pennylane/circuit_graph.py:is_returned_observable",
"pennylane/circuit_graph.py:CircuitGraph.max_simultaneous_measurements"
],
"added_modules": [
"pennylane/circuit_graph.py:is_returned_observable"
],
"edited_entities": [
... | PennyLaneAI/pennylane | 305279a39a1d70a49ff89b4d09644e62d65e735c | Drawing fails for (a) qubit-wise commuting observables, and (b) QNodes with no operations
Consider the following minimal example in which a QNode returns multiple qubit wise commuting obeservables:
```python
import networkx
import pennylane as qml
from pennylane import expval, PauliX, PauliY, PauliZ
dev = qml.... | diff --git a/.github/CHANGELOG.md b/.github/CHANGELOG.md
index c0a68ec87..a2d4b3f1f 100644
--- a/.github/CHANGELOG.md
+++ b/.github/CHANGELOG.md
@@ -322,6 +322,9 @@ random_mat2 = rng.standard_normal(3, requires_grad=False)
<h3>Bug fixes</h3>
+* Fixes drawing QNodes that contain multiple measurements on a single wi... |
PennyLaneAI__pennylane-1357 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/channel.py:AmplitudeDamping._kraus_matrices",
"pennylane/ops/channel.py:GeneralizedAmplitudeDamping._kraus_matrices",
"pennylane/ops/channel.py:PhaseDamping._kraus_matrices... | PennyLaneAI/pennylane | be3c88d320ee48a0f3fb761c981356137de20027 | Noise channels do not validate parameter values, leading to errors
#### Issue description
Description of the issue - include code snippets and screenshots here
if relevant. You may use the following template below
* *Expected behavior:* Raise an error showing that the probability (or sum of probabilities) are no... | diff --git a/.github/CHANGELOG.md b/.github/CHANGELOG.md
index bf107144e..4a3c53850 100644
--- a/.github/CHANGELOG.md
+++ b/.github/CHANGELOG.md
@@ -2,6 +2,9 @@
<h3>New features since last release</h3>
+* Added validation for noise channel parameters. Invalid noise parameters now
+ raise a `ValueError`. [(#1357)]... |
PennyLaneAI__pennylane-1405 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/grouping/group_observables.py:group_observables"
],
"edited_modules": [
"pennylane/grouping/group_observables.py:group_observables"
]
},
"file": "pennylane/gr... | PennyLaneAI/pennylane | abeeae3e8e085fa2802ebb63acf0a042cccbd67f | Hamiltonians created via addition produce incorrect results with `ExpvalCost(optimize=True)`
Good afternoon,
I was having problem with vqe when I set the flag: optmize = True . I noticed that there were errors when entering Hamiltonians of the form Z1@Z2 + Z2@Z1. We know it is the same as 2.Z1.Z2 but the optimizer se... | diff --git a/.github/CHANGELOG.md b/.github/CHANGELOG.md
index a04d061aa..249848161 100644
--- a/.github/CHANGELOG.md
+++ b/.github/CHANGELOG.md
@@ -503,6 +503,10 @@ random_mat2 = rng.standard_normal(3, requires_grad=False)
<h3>Bug fixes</h3>
+* Fixes a bug where multiple identical Hamiltonian terms will produce a... |
PennyLaneAI__pennylane-1411 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/operation.py:Operator.__copy__"
],
"edited_modules": [
"pennylane/operation.py:Operator"
]
},
"file": "pennylane/operation.py"
}
] | PennyLaneAI/pennylane | dedf69442b2492df52f723c1c55020f16545ef2d | Copying `qml.ControlledQubitUnitary`
The `Operator` base class defines a `__copy__` method for operators. For almost all `Operator`'s, this method works fine to duplicate a given instance.
But `qml.ControlledQubitUnitary` has a more complicated set of data, and copying it does not work fully.
```python
import p... | diff --git a/.github/CHANGELOG.md b/.github/CHANGELOG.md
index 1ee7f40da..8c8c3da30 100644
--- a/.github/CHANGELOG.md
+++ b/.github/CHANGELOG.md
@@ -577,6 +577,9 @@ random_mat2 = rng.standard_normal(3, requires_grad=False)
<h3>Bug fixes</h3>
+* Fixes a bug where a copy of `qml.ControlledQubitUnitary` was non-funct... |
PennyLaneAI__pennylane-2525 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/qubit/matrix_ops.py:DiagonalQubitUnitary._controlled"
],
"edited_modules": [
"pennylane/ops/qubit/matrix_ops.py:DiagonalQubitUnitary"
]
},
"file": "pennyl... | PennyLaneAI/pennylane | b0ab9be2a9ff8e64c4a264936f4945f490bf375d | [BUG] The `_controlled` method of `DiagonalQubitUnitary` returns the wrong operation
### Expected behavior
`DiagonalQubitUnitary(D, wires=wires)._controlled(control=control)` queues the controlled version of the `DiagonalQubitUnitary`, controlled by the wires `control`, which should again be a `DiagonalQubitUnitary` w... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 3b07fae6c..62e070a86 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -47,6 +47,12 @@
<h3>Deprecations</h3>
+<h3>Bug fixes</h3>
+
+* Fixes a bug in `DiagonalQubitUnitary._controlled` where an invalid o... |
PennyLaneAI__pennylane-2543 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/_qubit_device.py:QubitDevice.adjoint_jacobian"
],
"edited_modules": [
"pennylane/_qubit_device.py:QubitDevice"
]
},
"file": "pennylane/_qubit_device.py"
},
... | PennyLaneAI/pennylane | 55381d38adab411d5a44027260a9626abf6e464d | [BUG] Adjoint and backpropagation differentiation gives different results for custom qml.Hermitian observables
### Expected behavior
A QML model with a custom `qml.Hermitian` observable should give the identical results when trained with either adjoint differentiation or backprop differentiation methods.
### Actual b... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 588621e9d..e233745f1 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -12,6 +12,9 @@
<h3>Improvements</h3>
+* Introduced an `operations_only` argument to the `tape.get_parameters` method.
+ [(#2543)](... |
PennyLaneAI__pennylane-2601 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/templates/embeddings/basis.py:BasisEmbedding.__init__"
],
"edited_modules": [
"pennylane/templates/embeddings/basis.py:BasisEmbedding"
]
},
"file": "pennylane... | PennyLaneAI/pennylane | 5c25a2504ef5ffa59c02397d0ef36bb704313a9c | int to qml.BasisEmbedding
### Feature details
Currently, to use `BasisEmbedding` we have to pass a list with the bits [0,1,0,0] for example to put a PauliX gate in the second qubit. It would be nice to be able to pass an integer number like:
```python
qml.BasisEmbedding(4, wires = range(4))
```
This result wou... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 4630e2225..1a65e5b7e 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -104,6 +104,9 @@
* Sparse Hamiltonians representation has changed from COOrdinate (COO) to Compressed Sparse Row (CSR) format. The CSR ... |
PennyLaneAI__pennylane-2603 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/operation.py:Observable.__add__"
],
"edited_modules": [
"pennylane/operation.py:Observable"
]
},
"file": "pennylane/operation.py"
},
{
"changes": {
... | PennyLaneAI/pennylane | 2b07d22cfcc6406ba28e5c647062340b240a4ee5 | Support adding observable to scalar `0`?
### Feature details
It would be nice to be able to do the following:
```
H = sum([qml.PauliX(i) for i in range(10)])
```
The issue here is that `sum` naturally starts at integer 0 but there's no way to add observables to an integer 0. Philosophically it seems valid to u... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index e32411a68..c12f9fd9d 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -4,6 +4,14 @@
<h3>New features since last release</h3>
+* Support adding `Observable` objects to the integer `0`.
+ [(#2603)](http... |
PennyLaneAI__pennylane-2649 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"pennylane/devices/default_qubit.py:DefaultQubit"
]
},
"file": "pennylane/devices/default_qubit.py"
},
{
"changes": {
"added_entities": null,
... | PennyLaneAI/pennylane | c6e7ca6714cf8f11b373fc8f8e13b0681b222a07 | Adding `IsingXY` operation
### **Context**
We would like to define a new operation called IsingXY, as [defined in the PennyLane-Braket plugin](https://amazon-braket-pennylane-plugin-python.readthedocs.io/en/latest/code/api/braket.pennylane_plugin.XY.html).
### **Steps to take**
**Adding the operation**
- A... | diff --git a/doc/introduction/operations.rst b/doc/introduction/operations.rst
index 3facaa3f4..e1ac06ae0 100644
--- a/doc/introduction/operations.rst
+++ b/doc/introduction/operations.rst
@@ -155,6 +155,7 @@ Parametrized gates
~pennylane.U2
~pennylane.U3
~pennylane.IsingXX
+ ~pennylane.IsingXY
~... |
PennyLaneAI__pennylane-2654 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "pennylane/ops/qubit/parametric_ops.py"
},
{
"changes": {
"added_entities": [
"pennylane/utils.py:__getattr__"
],
"added_modu... | PennyLaneAI/pennylane | 5d83fdf36fa83b74479cb54db51c03c0df16d8fc | Remove `qml.utils.expand`
### Feature details
It seems that the utility function `qml.utils.expand` is no longer used anywhere as of #2609.
It therefore could be removed. A differentiable, more up-to-date version is available in `qml.operation.expand_matrix`.
### Implementation
_No response_
### How important woul... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 2942673a7..068935a9a 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -665,6 +665,9 @@
* The `qml.queuing.Queue` class is now removed.
[(#2599)](https://github.com/PennyLaneAI/pennylane/pull/2599)
+* ... |
PennyLaneAI__pennylane-2668 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/drawer/tape_mpl.py:tape_mpl"
],
"edited_modules": [
"pennylane/drawer/tape_mpl.py:tape_mpl"
]
},
"file": "pennylane/drawer/tape_mpl.py"
},
{
"changes"... | PennyLaneAI/pennylane | 189de280e93a6c0921948d2941647cea3e0f2f08 | Have control state of qubits visible in the circuit drawing
### Feature details
When using a controlled gate with custom control values, the drawing of the circuit does not represent this. The control values correctly show up in the mpl figure.
Example:
```
dev = qml.device('default.qubit',wires=4, shots=100)
@qml... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 30ebfd728..8600b0912 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -309,6 +309,9 @@
* The performance of building sparse Hamiltonians has been improved by accumulating the sparse representation of coeff... |
PennyLaneAI__pennylane-2947 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/functions/equal.py:equal"
],
"edited_modules": [
"pennylane/ops/functions/equal.py:equal"
]
},
"file": "pennylane/ops/functions/equal.py"
}
] | PennyLaneAI/pennylane | ee190b3a7644a47574ee64e4d68487b8c8521259 | [BUG] `qml.equal` ignore in-place inversion
Currently, we have:
```
>>> qml.equal(qml.RX(1.0, wires=0), qml.RX(1.0, wires=0).inv())
True
```
If two operations are inverses of each other, they should not be equal. | diff --git a/doc/releases/changelog-0.25.0.md b/doc/releases/changelog-0.25.0.md
index 1696b9060..3a49b7bd4 100644
--- a/doc/releases/changelog-0.25.0.md
+++ b/doc/releases/changelog-0.25.0.md
@@ -710,6 +710,9 @@ of operators.
<h3>Bug fixes 🐞</h3>
+* Fixes `qml.equal` so that operators with different inverse prop... |
PennyLaneAI__pennylane-2964 | [
{
"changes": {
"added_entities": [
"pennylane/ops/identity.py:Identity.compute_sparse_matrix"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"pennylane/ops/identity.py:Identity"
]
},
"file": "pennylane/ops/identity.py"
},
{
... | PennyLaneAI/pennylane | 754f2c978cba83a83ba7117df1b930d1512ea333 | Add sparse matrix representations for Pauli Operators
While the Pauli operators (`PauliX`, `PauliY`, `PauliZ`, `Identity`) themselves are fairly dense, they are often multiplied together to form large tensors. To assist with the formation of sparse matrices for large combination operations, we should add sparse matrice... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index cbe4b45ba..f16ecddac 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -112,6 +112,9 @@
>>> qml.simplify(adj_op)
RX(-1, wires=[0])
```
+
+* Added `sparse_matrix()` support for single qubit observa... |
PennyLaneAI__pennylane-3024 | [
{
"changes": {
"added_entities": [
"pennylane/transforms/optimization/optimization_utils.py:_singular_quat_to_zyz",
"pennylane/transforms/optimization/optimization_utils.py:_regular_quat_to_zyz"
],
"added_modules": [
"pennylane/transforms/optimization/optimization_utils... | PennyLaneAI/pennylane | 3306eddbf2822c4de958d75519d2e4a235c54dc5 | [BUG] `single_qubit_fusion` returns wrong angles for specific case
### Expected behavior
The tape transform `single_qubit_fusion` always performs valid transforms, not changing the action of the tape.
### Actual behavior
For the following specific case, the transform reports wrong angles. Having tracked this d... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index b9b27cf98..79dd35847 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -304,6 +304,10 @@
<h3>Bug fixes</h3>
+* Fixes a bug where the tape transform `single_qubit_fusion` computed wrong rotation angles
+... |
PennyLaneAI__pennylane-3033 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "pennylane/grouping/__init__.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"penny... | PennyLaneAI/pennylane | 29acf0d15698802b19249d23178e5fcdf123f51b | [BUG] `qml.is_commuting` breaks with `Tensor` operators.
If we try to check commutation of `Tensor` objects with `qml.is_commuting`, we get:
```
>>> qml.is_commuting(qml.PauliX(0) @ qml.PauliX(1), qml.PauliX(0) @ qml.PauliY(2))
----> 1 qml.is_commuting(qml.PauliX(0) @ qml.PauliX(1), qml.PauliX(0) @ qml.PauliY(2)... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index c03562076..00b0bdecc 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -418,6 +418,9 @@
`~/math/matrix_manipulation.py`
[(#3008)](https://github.com/PennyLaneAI/pennylane/pull/3008)
+* `qml.grouping.... |
PennyLaneAI__pennylane-3057 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/op_math/exp.py:Exp.matrix"
],
"edited_modules": [
"pennylane/ops/op_math/exp.py:Exp"
]
},
"file": "pennylane/ops/op_math/exp.py"
}
] | PennyLaneAI/pennylane | f09e09a7bdb1b37ff5f1f9197ea6e8bbe135ead9 | [BUG] Matrix method of `qml.exp` doesn't utilize `wire_order`
### Expected behavior
Matrix method of `qml.exp` should utilize `wire_order` in calculating both `diagonalizing_mat` and `eigenval_mat`.
### Actual behavior
Since `qml.eigvals` doesn't support `wire_order` currently, the matrix method of `qml.exp` skips... | diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index bcb981d48..2cfedfce7 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -18,4 +18,3 @@ repos:
hooks:
- id: black
exclude: ^doc/
- language_version: python3.8
diff --git a/doc/releases/changelog-0.26.0.md b/doc/... |
PennyLaneAI__pennylane-3104 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/transforms/transpile.py:transpile"
],
"edited_modules": [
"pennylane/transforms/transpile.py:transpile"
]
},
"file": "pennylane/transforms/transpile.py"
}
] | PennyLaneAI/pennylane | ea559f96d226a4cae248ce17d9afb33bb8b5a35f | [BUG] qml.transforms.transpile does not work with MultiRZ
### Expected behavior
qml.transforms.transpile does not add SWAP gates for MultiRZ operations between 2 qubits and just ignores it. This might be due to MultiRZ being able to act on more than 2 qubits at a time. However, it's currently the only way to add RZZ... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 7425dbcea..89991a3b0 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -99,6 +99,9 @@ keyword argument when using `GellMann`, which determines which of the 8 Gell-Man
<h3>Bug fixes</h3>
+* Fixed the `qm... |
PennyLaneAI__pennylane-3181 | [
{
"changes": {
"added_entities": [
"pennylane/ops/qubit/observables.py:Hermitian._validate_input"
],
"added_modules": null,
"edited_entities": [
"pennylane/ops/qubit/observables.py:Hermitian.__init__",
"pennylane/ops/qubit/observables.py:Hermitian.compute_matrix"
... | PennyLaneAI/pennylane | 9c04eef9bd7f40072c6d6131a39f10a29331505f | [BUG] Error when multiplying certain Hamiltonian observables
### Expected behavior
I've been playing around with the different observable types in Pennylane and noticed we do support multiplying Hamiltonians together, both from tensor products of Paulis and from Hermitian observables:
```py
import pennylane as qml... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 21471d126..158ac49c3 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -86,6 +86,9 @@ keyword argument when using `GellMann`, which determines which of the 8 Gell-Man
<h3>Improvements</h3>
+* The matrix... |
PennyLaneAI__pennylane-3182 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/queuing.py:QueuingManager.stop_recording"
],
"edited_modules": [
"pennylane/queuing.py:QueuingManager"
]
},
"file": "pennylane/queuing.py"
}
] | PennyLaneAI/pennylane | d82ffc493e87271184a2b31992a39c8aa36d9b6e | [BUG] Inline transforms vs. Decorator transforms
### Expected behavior
This script:
```
def circuit(circuit_param):
qml.RY(circuit_param, wires=0)
qml.Hadamard(wires=0)
qml.T(wires=0)
def noise(noise_param, wires):
qml.CRX(noise_param, wires=[0,1])
qml.CNOT(wires=[1,0])
dev = qm... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index e2beb942c..fcc47fcc3 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -206,6 +206,9 @@ keyword argument when using `GellMann`, which determines which of the 8 Gell-Man
* Fixed a bug where `qml.math.fidelit... |
PennyLaneAI__pennylane-3206 | [
{
"changes": {
"added_entities": [
"pennylane/ops/qubit/matrix_ops.py:ControlledQubitUnitary.control_values"
],
"added_modules": null,
"edited_entities": [
"pennylane/ops/qubit/matrix_ops.py:ControlledQubitUnitary.pow",
"pennylane/ops/qubit/matrix_ops.py:Controlle... | PennyLaneAI/pennylane | 43cb8bf7d4e8753b6e717224504bd4222e3b7ef9 | [BUG] Incorrect control values in `ControlledQubitUnitary.pow()`
### Expected behavior
For some integer `x` and 2x2 unitary matrix `mat`, using `ControlledQubitUnitary.pow()` has the following expected behaviour:
```pycon
>>> op = qml.ControlledQubitUnitary(mat, control_wires=[0, 1], wires=2, control_values="00")
>... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 2949050b8..5d9832fe5 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -140,6 +140,9 @@ keyword argument when using `GellMann`, which determines which of the 8 Gell-Man
* New `null.qubit` device. The `nul... |
PennyLaneAI__pennylane-3266 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/devices/default_qubit.py:DefaultQubit.expval"
],
"edited_modules": [
"pennylane/devices/default_qubit.py:DefaultQubit"
]
},
"file": "pennylane/devices/default... | PennyLaneAI/pennylane | 83b1da0dcbda3012af26f1885d025118dbaaf2a5 | [BUG] Wires are not checked when computing the `expval` of a `Hamiltonian` with `shots=None`
### Expected behavior
The attached code should raise the error:
```
pennylane.wires.WireError: Did not find some of the wires (0, 1) on device with wires (0,).
```
### Actual behavior
It runs and returns an incorrec... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index ed8709038..a19551983 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -667,6 +667,10 @@ Users can specify the control wires as well as the values to control the operati
* Fixed a bug where `qml.BasisEmbedd... |
PennyLaneAI__pennylane-3278 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/qubit/observables.py:SparseHamiltonian.__init__"
],
"edited_modules": [
"pennylane/ops/qubit/observables.py:SparseHamiltonian"
]
},
"file": "pennylane/ops... | PennyLaneAI/pennylane | 2420bf35aeca8e3c8ef343d593e9b117671e09c8 | [BUG] Issue with expval of SparseH not building correct sized matrix
### Expected behavior
The following example should run to completion:
```python
import pennylane as qml
dev = qml.device("default.qubit", wires=4)
@qml.qnode(dev, diff_method="parameter-shift")
def circuit(p):
qml.PauliX(0)
return qm... | diff --git a/doc/releases/changelog-0.27.0.md b/doc/releases/changelog-0.27.0.md
index e7f2db581..853c0da7a 100644
--- a/doc/releases/changelog-0.27.0.md
+++ b/doc/releases/changelog-0.27.0.md
@@ -592,6 +592,9 @@
<h3>Bug fixes</h3>
+* `qml.SparseHamiltonian` now validates the size of the input matrix.
+ [(#3278)]... |
PennyLaneAI__pennylane-3381 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/transforms/insert_ops.py:insert"
],
"edited_modules": [
"pennylane/transforms/insert_ops.py:insert"
]
},
"file": "pennylane/transforms/insert_ops.py"
}
] | PennyLaneAI/pennylane | 25071c8c7d577b9016af21b28ac1ae8363b5bb3a | [BUG] Inline transforms vs. Decorator transforms
### Expected behavior
This script:
```
def circuit(circuit_param):
qml.RY(circuit_param, wires=0)
qml.Hadamard(wires=0)
qml.T(wires=0)
def noise(noise_param, wires):
qml.CRX(noise_param, wires=[0,1])
qml.CNOT(wires=[1,0])
dev = qm... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index d571ddc3f..d72f80ad2 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -101,7 +101,11 @@
[(#3302)](https://github.com/PennyLaneAI/pennylane/pull/3302)
* A representation has been added to the `Molecule... |
PennyLaneAI__pennylane-3477 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/qubit/matrix_ops.py:QubitUnitary.compute_decomposition"
],
"edited_modules": [
"pennylane/ops/qubit/matrix_ops.py:QubitUnitary"
]
},
"file": "pennylane/op... | PennyLaneAI/pennylane | d06c9c197dd6745e0056a94c8cdd419b4c0b6bfa | Implement decomposition of `QubitUnitary` with parameter broadcasting
### Feature details
When using a broadcasted unitary matrix in `QubitUnitary` (possible as of #2609), the `decomposition` is not defined yet.
This can be implemented but may not be entirely straightforward.
### Implementation
To implement this fe... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 0df4dd3a6..5fe8e4fbd 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -303,6 +303,11 @@
the optional `use_grouping` attribute.
[(#3456)](https://github.com/PennyLaneAI/pennylane/pull/3456)
+* Update... |
PennyLaneAI__pennylane-3483 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/op_math/prod.py:prod"
],
"edited_modules": [
"pennylane/ops/op_math/prod.py:prod"
]
},
"file": "pennylane/ops/op_math/prod.py"
},
{
"changes": {
... | PennyLaneAI/pennylane | 6b8e970d4cc6eaf70dc1b59b47086689f3b2c474 | Add `lazy=True` keyword argument to `qml.s_prod`, `qml.prod`, and `qml.op_sum`
Currently, `qml.pow` and `qml.adjoint` both have a keyword argument `lazy=True` that indicates whether or not to perform some basic simplification steps:
```
>>> qml.adjoint(qml.PauliX(0), lazy=True)
Adjoint(PauliX(wires=[0]))
>>> qml.... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index aed8a4a2c..0570aa7a9 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -409,6 +409,9 @@
the optional `use_grouping` attribute.
[(#3456)](https://github.com/PennyLaneAI/pennylane/pull/3456)
+* Add the... |
PennyLaneAI__pennylane-3624 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/math/is_independent.py:_get_random_args"
],
"edited_modules": [
"pennylane/math/is_independent.py:_get_random_args"
]
},
"file": "pennylane/math/is_independen... | PennyLaneAI/pennylane | efe3c077efdd366121fd8eee322250cf498a5653 | [BUG] qml.chem.molecular_hamiltonian sets random number generator seed
### Expected behavior
When using the argument `shots=100` to a device one expects variation in the output. This variation depends on the random number generator that is used internally in the device.
Setting on controlling the seed of the RNG i... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index fc59a61f5..6adf859bb 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -160,13 +160,22 @@
from the queue instead of updating their metadata to have an `"owner"`.
[(#3282)](https://github.com/PennyLaneA... |
PennyLaneAI__pennylane-3753 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/_qubit_device.py:QubitDevice._permute_wires",
"pennylane/_qubit_device.py:QubitDevice.marginal_prob",
"pennylane/_qubit_device.py:QubitDevice.expval",
"pennylane/_qubit... | PennyLaneAI/pennylane | 162472fe896f727ceadc72c4fce11626f7eff7f8 | [BUG] Confusing behavior with the `wires` argument of `qml.probs`
### Expected behavior
Consider a case where where a device's wires are ordered as `[2,0,1]` and we'd like to get the probabilities associated with these wires in the order `[0,1,2]`. That is, if a `qml.PauliX(wires=[0])` operation is applied, I would ex... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 9e8f3e39f..560da79ca 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -718,6 +718,10 @@
* Redirect `qml.math.ndim` to `jnp.ndim` when using it on a jax tensor.
[(#3730)](https://github.com/PennyLaneAI/p... |
PennyLaneAI__pennylane-3921 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/measurements/sample.py:SampleMP.shape",
"pennylane/measurements/sample.py:SampleMP._shape_new"
],
"edited_modules": [
"pennylane/measurements/sample.py:SampleMP"
... | PennyLaneAI/pennylane | 4a001137d469c3163fadc9f64554e3e9384fd342 | [BUG] `Sample` does not work with jitting when a subset of wires are used
### Expected behavior
`qml.sample` works without errors when a circuit with parameters is jitted and a subset of the circuit wires are specified in the call to `qml.sample`.
### Actual behavior
An exception is raised due to a mismatch be... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 56d423515..b86cd9fda 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -197,6 +197,9 @@
(~2e-8) in the computed dipole moment values, resulting from the new [PySCF 2.2.0](https://github.com/pyscf/pyscf/re... |
PennyLaneAI__pennylane-3983 | [
{
"changes": {
"added_entities": [
"pennylane/ops/op_math/evolution.py:Evolution.data",
"pennylane/ops/op_math/evolution.py:Evolution.__copy__"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"pennylane/ops/op_math/evolution.py:Evoluti... | PennyLaneAI/pennylane | 60c39bdd9ca245df78e7cc5a900228a0f870b356 | [BUG] Composite operator parameters are not trainable
### Expected behavior
The parameters of composite ops are trainable (just like the 1st-generation Tensor and Hamiltonians).
### Actual behavior
They are not trainable.
### Additional information
This is because composite operators put their parameters in vanill... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 32a1ddcfa..74af67582 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -158,8 +158,9 @@
* `retworkx` has been renamed to `rustworkx` to accomodate the change in name for the package.
[(#3975)](https://gi... |
PennyLaneAI__pennylane-4161 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/pauli/utils.py:are_identical_pauli_words"
],
"edited_modules": [
"pennylane/pauli/utils.py:are_identical_pauli_words"
]
},
"file": "pennylane/pauli/utils.py"
... | PennyLaneAI/pennylane | 2886e28476ac5410b491e8d782ceecc71e430d87 | [BUG] Wrong expectation value of Hamiltonian with return qml.expval(H)
### Expected behavior
Expected to get the same expectation value of a qml.Hamiltonian no matter
1. how the operators and the corresponding coefficient are ordered when it was constructed.
2. applied the grouping method ('QWC') or not.
### A... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 36cd9cb70..3018521fe 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -178,6 +178,10 @@
* Removes a patch in `interfaces/autograd.py` that checks for the `strawberryfields.gbs` device. That device
is p... |
PennyLaneAI__pennylane-4251 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/devices/default_qubit.py:DefaultQubit.expval"
],
"edited_modules": [
"pennylane/devices/default_qubit.py:DefaultQubit"
]
},
"file": "pennylane/devices/default... | PennyLaneAI/pennylane | ffafa34bc4d684fde732ede081346e317bdbe3a3 | [BUG] Issue with the gradients of the expectation value of an operator
### Expected behavior
Hi, I'm trying to compute the gradient of the circuit with respect to the parameters on the operator $\theta_{i,i+1}(\sigma^+_i\sigma^-_{i+1} + \sigma^+_{i+1}\sigma^-_i)$ where $\theta$ is my variable. When I compute the expec... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index b4de43a35..07084e2f4 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -438,6 +438,9 @@
An if conditional was intended to prevent divide by zero errors but the division was by the sine of the argument so ... |
PennyLaneAI__pennylane-4295 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/drawer/mpldrawer.py:MPLDrawer.ctrl"
],
"edited_modules": [
"pennylane/drawer/mpldrawer.py:MPLDrawer"
]
},
"file": "pennylane/drawer/mpldrawer.py"
}
] | PennyLaneAI/pennylane | 6e0d11a8025007f4295b78733e318bd343710c5a | [BUG] draw_mpl misses controls for multi-target-wire ops with interspersed wires
### Expected behavior
All control and target wires are indicated in some way, or the draw function fails.
### Actual behavior
The control wire sandwiched between target wires is hidden behind a box drawing, For example, the attached ima... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 7667e77f5..5c4a4b0d9 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -14,6 +14,11 @@
<h3>Bug fixes 🐛</h3>
+* Raise a warning if control indicators are hidden when calling `qml.draw_mpl`
+ [(#4295)](... |
PennyLaneAI__pennylane-4343 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/pulse/hardware_hamiltonian.py:HardwareHamiltonian.__add__"
],
"edited_modules": [
"pennylane/pulse/hardware_hamiltonian.py:HardwareHamiltonian"
]
},
"file": "... | PennyLaneAI/pennylane | c627a5df976d4205520ba9614b93daeb1a9c535c | [BUG] `sum` not working with hardware Hamiltonians (transmons and rydberg)
### Expected behavior
Working with hardware Hamiltonians, we add them together with similar syntax to `H = H_interaction + H_drive`. Often, we repeatedly add terms manually, e.g., `H_drive += qml.pulse.transmon_drive(amplitude, phase, freq, wir... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 93c39b88d..ef846119c 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -13,6 +13,10 @@
<h3>Improvements 🛠</h3>
+* `HardwareHamiltonian`s can now be summed with `int` or `float`.
+ A sequence of `Hardw... |
PennyLaneAI__pennylane-4366 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/operation.py:Observable._obs_data"
],
"edited_modules": [
"pennylane/operation.py:Observable"
]
},
"file": "pennylane/operation.py"
},
{
"changes": {
... | PennyLaneAI/pennylane | d17e6d92e3f3ef631a346295151978e4bac39466 | [BUG] op_math adding two GellMann observables doesn't treat them as different Hermitians
### Expected behavior
```
>>> gell_1 = qml.GellMann(wires=0, index=3)
>>> gell_2 = qml.GellMann(wires=0, index=8)
>>> ham_added = gell_1 + gell_2
>>> print(type(ham_added))
<class 'pennylane.ops.qubit.hamiltonian.Hamiltonian'... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index a8d591446..5232b802c 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -137,6 +137,11 @@
* `default.qutrit` now supports all qutrit operations used with `qml.adjoint`.
[(#4348)](https://github.com/PennyL... |
PennyLaneAI__pennylane-4421 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/optimize/qnspsa.py:QNSPSAOptimizer._get_overlap_tape"
],
"edited_modules": [
"pennylane/optimize/qnspsa.py:QNSPSAOptimizer"
]
},
"file": "pennylane/optimize/q... | PennyLaneAI/pennylane | e9fb43b96093bf4205881c2370b33828a6e2a8c5 | [BUG] `qml.QNSPSAOptimizer` includes `op.adjoint` instead of `qml.adjoint(op)` in source
### Expected behavior
Circuit that includes `qml.RandomLayers` and uses `qml.QNSPSAOptimizer` executes normally.
### Actual behavior
Execution raises `AdjointUndefinedError`. Other optimizers execute fine.
### Additiona... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index bb4a9d4b8..2a9141cd3 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -196,6 +196,9 @@
`Tensor.sparse_matrix()`, it is recommended to use the `wire_order` keyword argument over `wires`.
[(#4424)](htt... |
PennyLaneAI__pennylane-4441 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/operation.py:Operator.__sub__"
],
"edited_modules": [
"pennylane/operation.py:Operator"
]
},
"file": "pennylane/operation.py"
}
] | PennyLaneAI/pennylane | e3e85aa82df2a811ad59b11215a3d22a8f6f1c01 | [BUG] Unexpected behaviour with operator subtraction and `.simplify()`
### Expected behavior
I am trying to combine Pauli strings using addition/subtraction and tensor products. Subtracting operators from each other and simplifying the result should be possible. For example,
```
>>> H1 = qml.PauliZ(0)
>>> H2 = ... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 8a9ccee85..4a9add0c3 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -311,6 +311,9 @@ array([False, False])
and `var` measurements.
[(#4426)](https://github.com/PennyLaneAI/pennylane/pull/4426)
+* ... |
PennyLaneAI__pennylane-4540 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/functions/bind_new_parameters.py:bind_new_parameters",
"pennylane/ops/functions/bind_new_parameters.py:bind_new_parameters_hamiltonian"
],
"edited_modules": [
"... | PennyLaneAI/pennylane | 6fae4e77ab73a330cd28eb237cd3b7ed712f4dac | [BUG] pennylane.tape.Unwarp does not unwrap Hamiltonian coefficients
### Expected behavior
`qml.tape.unwrap` convert all ArrayBox in a tape to usual arrays.
### Actual behavior
Coefficients of the `Hamiltonian` object instance (accessible via `ham.coeffs`) are not unwrapped.
### Additional information
_N... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index ea10f7a9b..2f805d618 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -66,6 +66,9 @@
<h3>Bug fixes 🐛</h3>
+* `convert_to_numpy_parameters` now uses `qml.ops.functions.bind_new_parameters`. This reinit... |
PennyLaneAI__pennylane-4663 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/data/data_manager/foldermap.py:FolderMapView.find"
],
"edited_modules": [
"pennylane/data/data_manager/foldermap.py:FolderMapView"
]
},
"file": "pennylane/dat... | PennyLaneAI/pennylane | 4c3ab729c0715c0a78a0e9b3454a650f0e7e7096 | [BUG] `qml.data.load()` fails when using 'full' parameter value
### Expected behavior
`qml.data.load('qspin',sysname='Heisenberg',periodicity='open',lattice='full',layout='2x2')`
Should return the Heisenberg dataset corresponding to the `open` periodicity, `rectangular` lattice, and `2x2` layout.
### Actual beha... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 1ac65dd07..b904b6e4a 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -210,6 +210,9 @@
still a `_qfunc_output` property on `QNode` instances.
[(#4651)](https://github.com/PennyLaneAI/pennylane/pull/46... |
PennyLaneAI__pennylane-4697 | [
{
"changes": {
"added_entities": [
"pennylane/ops/op_math/controlled.py:_is_single_qubit_special_unitary"
],
"added_modules": [
"pennylane/ops/op_math/controlled.py:_is_single_qubit_special_unitary"
],
"edited_entities": [
"pennylane/ops/op_math/controlled.p... | PennyLaneAI/pennylane | 39c996ac3f5bf97c87ae0cb3f3b8ba29b5955001 | Decomposition of multi-controlled RZ not supported[BUG]
### Expected behavior
Should be able to decompose a multi-controlled RZ gate:
```python
import pennylane as qml
dev = qml.device("default.qubit", wires=[0,1,2])
decomposition = qml.ctrl(qml.RZ(0, wires=[0]), control=[1,2]).decomposition()
@qml.qnode(dev)
... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 0220304d1..cd0d2c9a3 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -198,6 +198,9 @@
<h3>Improvements 🛠</h3>
+* Multi-controlled operations with a single qubit special unitary target can now automat... |
PennyLaneAI__pennylane-4993 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/_qubit_device.py:QubitDevice.expval",
"pennylane/_qubit_device.py:QubitDevice.var"
],
"edited_modules": [
"pennylane/_qubit_device.py:QubitDevice"
]
},
... | PennyLaneAI/pennylane | 974ab77bfdb488ad11c2a4241b6940b7d4bf53c4 | [BUG] qubit device expval method doesn't work with batch and BasisStateProjector
### Expected behavior
When utilizing a qubit device with batch processing, expval output, and BasisStateProjector, the probabilities need to be correctly indexed in the good dimension.
### Actual behavior
When utilizing a qubit device w... | diff --git a/doc/releases/changelog-0.34.0.md b/doc/releases/changelog-0.34.0.md
index 21d33279a..2d64b8c32 100644
--- a/doc/releases/changelog-0.34.0.md
+++ b/doc/releases/changelog-0.34.0.md
@@ -708,7 +708,10 @@
[(#4951)](https://github.com/PennyLaneAI/pennylane/pull/4951)
* `MPLDrawer` does not add the bonus s... |
PennyLaneAI__pennylane-5063 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/op_math/sprod.py:SProd.__init__"
],
"edited_modules": [
"pennylane/ops/op_math/sprod.py:SProd"
]
},
"file": "pennylane/ops/op_math/sprod.py"
},
{
... | PennyLaneAI/pennylane | f854611abc354f480a3b04894f0956fb4d3d3b8e | [Bug] qml.equal return False unexpectedly
Encountered this problem in https://github.com/PennyLaneAI/pennylane/pull/5051 for creating a `qml.commutator` function.
Even though the result from computing the commutator seems the same, `qml.equal` returns `False` when checking with the true result. Really not clear what... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 3cec643ed..96ee5ab67 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -35,10 +35,11 @@
* A new `pennylane.workflow` module is added. This module now contains `qnode.py`, `execution.py`, `set_shots.py`, `ja... |
PennyLaneAI__pennylane-5256 | [
{
"changes": {
"added_entities": [
"pennylane/measurements/counts.py:CountsMP.process_counts",
"pennylane/measurements/counts.py:CountsMP._map_counts",
"pennylane/measurements/counts.py:CountsMP._include_all_outcomes",
"pennylane/measurements/counts.py:_remove_unobserved_ou... | PennyLaneAI/pennylane | 9d54b1caddc239c0884b0de116f0322b80b622c2 | Implement `CountsMP.process_counts`
# Context
Currently, our sample-based measurement processes that inherit from `SampleMeasurement` implement a [process_samples](https://github.com/PennyLaneAI/pennylane/blob/a05ae286c5925e0c881099cea751193d368779fc/pennylane/measurements/measurements.py#L535) method. This method i... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 2a70356a3..445064a36 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -114,6 +114,9 @@
* `qml.transforms.split_non_commuting` will now work with single-term operator arithmetic.
[(#5314)](https://github... |
PennyLaneAI__pennylane-5407 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/pauli/pauli_arithmetic.py:PauliSentence.to_mat"
],
"edited_modules": [
"pennylane/pauli/pauli_arithmetic.py:PauliSentence"
]
},
"file": "pennylane/pauli/pauli... | PennyLaneAI/pennylane | 45f8e75834e6d7a649421cb19776ff4ea2dd5d1b | [Bug] `PauliSentence.to_mat(wire_order)` cannot handle Identities with wires
```python
PauliSentence({PauliWord({}): 1.}).to_mat([0, 1])
```
```pycon
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
Cell In[4]... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 0759bc717..2012081bb 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -264,9 +264,13 @@
* We no longer perform unwanted dtype promotion in the `pauli_rep` of `SProd` instances when using tensorflow.
[(#... |
PennyLaneAI__pennylane-5439 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/optimize/qnspsa.py:QNSPSAOptimizer.__init__",
"pennylane/optimize/qnspsa.py:QNSPSAOptimizer._step_core",
"pennylane/optimize/qnspsa.py:QNSPSAOptimizer._post_process_tensor",
... | PennyLaneAI/pennylane | 05e266d387f6a09a26090d764ad6904bc538bf1b | [BUG] `QNSPSAOptimizer` with Autograd changes differentiable parameters type to vanilla NumPy array
### Expected behavior
Updating parameters with `opt = qml.QNSPSAOptimizer` should not change the type of the parameters.
### Actual behavior
The parameters change from `<class 'pennylane.numpy.tensor.tensor'>` to `<cl... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index d1f17ae1d..621b094b7 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -291,6 +291,9 @@
<h3>Bug fixes 🐛</h3>
+* The `QNSPSAOptimizer` now properly handles differentiable parameters, resulting in being ... |
PennyLaneAI__pennylane-5455 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/qubit/hamiltonian.py:Hamiltonian.__matmul__"
],
"edited_modules": [
"pennylane/ops/qubit/hamiltonian.py:Hamiltonian"
]
},
"file": "pennylane/ops/qubit/ham... | PennyLaneAI/pennylane | 8327ffa0e2a262ed2f33b458c4d252cf3047e062 | [BUG] Hamiltonians defined using operator arithmetic queuing extra gates
### Expected behavior
When defining
```
dev = qml.device('default.qubit', wires = [0,1])
def H(alpha, beta):
coeffs = [alpha, beta]
ops = [qml.PauliX(0) @ qml.PauliX(1),qml.PauliZ(0) @ qml.PauliZ(1)]
return qml.dot(coeffs,ops)
... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 621b094b7..5356fa8a7 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -291,6 +291,9 @@
<h3>Bug fixes 🐛</h3>
+* Using `@` with legacy Hamiltonian instances now properly de-queues the previously existin... |
PennyLaneAI__pennylane-5538 | [
{
"changes": {
"added_entities": [
"pennylane/ops/functions/equal.py:_equal_hilbert_schmidt"
],
"added_modules": [
"pennylane/ops/functions/equal.py:_equal_hilbert_schmidt"
],
"edited_entities": null,
"edited_modules": null
},
"file": "pennylane/ops/fu... | PennyLaneAI/pennylane | d03216e6ce5407a7f28489aa4d4b23a9c4345fac | [BUG] `qml.equal` does not work with `qml.HilbertSchmidt`
### Expected behavior
Equal ops are detected to be equal
### Actual behavior
Equal ops are reported to be different
### Additional information
The culprit is `v_tape` in the hyperparameters.
### Source code
```shell
u_tape = qml.tape.QuantumScript([qml.Ha... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 6291af1df..8681fe6af 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -390,6 +390,9 @@
<h3>Bug fixes 🐛</h3>
+* (In)equality of `qml.HilbertSchmidt` instances is now reported correctly by `qml.equal`.
... |
PennyLaneAI__pennylane-5582 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/devices/null_qubit.py:NullQubit.preprocess"
],
"edited_modules": [
"pennylane/devices/null_qubit.py:NullQubit"
]
},
"file": "pennylane/devices/null_qubit.py"
... | PennyLaneAI/pennylane | ea0107d15a2794dbe7772d89edd18a99b9b1e664 | [BUG] `null.qubit` no longer plays nicely with custom operations
### Expected behavior
``` py
import pennylane as qml
from pennylane.resource.error import ErrorOperation
class IssueErrorOp(ErrorOperation):
def __init__(self, phase, wires):
self.phase = phase
super().__init__(phase, wires=... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index a1d7cae39..7d475e151 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -543,6 +543,9 @@
<h3>Bug fixes 🐛</h3>
+* `null.qubit` now automatically supports any operation without a decomposition.
+ [(#5582... |
PennyLaneAI__pennylane-5716 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/templates/layers/strongly_entangling.py:StronglyEntanglingLayers.compute_decomposition"
],
"edited_modules": [
"pennylane/templates/layers/strongly_entangling.py:StronglyEn... | PennyLaneAI/pennylane | 85ff62b9c9218f523ef7ff0535cde7cbf55ebb7b | Issue when using batched data on StronglyEntanglingLayers template.[BUG]
### Expected behavior
I want to use the StronglyEntanglingLayers template to process batched data. the shape of the data is like [batch_size, layers, wires, 3].
### Actual behavior
Some errors happened:
```
.../pennylane/templates/layers/st... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index bd4e5f0ff..9d88744ff 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -144,6 +144,9 @@
<h3>Bug fixes 🐛</h3>
+* The decomposition of `StronglyEntanglingLayers` is now compatible with broadcasting.
+ [... |
PennyLaneAI__pennylane-5725 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/op_math/controlled.py:create_controlled_op"
],
"edited_modules": [
"pennylane/ops/op_math/controlled.py:create_controlled_op"
]
},
"file": "pennylane/ops/... | PennyLaneAI/pennylane | fdca35219255946ca8dd5dcd8a15d9fedbc5d034 | [BUG] `defer_measurements` does not work with `qml.cond` applied to controlled gates
### Expected behavior
`qml.cond` can be applied to any valid `Operation` and `defer_measurements` can deal with the resulting operation as well.
### Actual behavior
Using `qml.cond` on a controlled operation and deferring measuremen... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 052a8975c..bd4e5f0ff 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -9,6 +9,9 @@
<h3>Improvements 🛠</h3>
+* `ctrl` now works with tuple-valued `control_values` when applied to any already controlled... |
PennyLaneAI__pennylane-5761 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/devices/default_qubit.py:_supports_adjoint",
"pennylane/devices/default_qubit.py:DefaultQubit.supports_derivatives"
],
"edited_modules": [
"pennylane/devices/defaul... | PennyLaneAI/pennylane | f318ec44fd717434854a87b8d67197c9b0672089 | [BUG] Adjoint method does not respect global wires return types
### Expected behavior
Found by @Shiro-Raven:
The adjoint method _validation_ takes the same wires into account for measurements as forward execution unrelated to the adjoint method.
### Actual behavior
An error is raised.
### Additional information
... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 489fd740d..a7d698c73 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -190,6 +190,9 @@
<h3>Bug fixes 🐛</h3>
+* The validation of the adjoint method in `DefaultQubit` correctly handles device wires now... |
PennyLaneAI__pennylane-5781 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/devices/default_qubit.py:adjoint_state_measurements"
],
"edited_modules": [
"pennylane/devices/default_qubit.py:adjoint_state_measurements"
]
},
"file": "penn... | PennyLaneAI/pennylane | c1cd0829df15f4d1eca110032e50a2b487bfe1e1 | [BUG] Specs does not take into account transforms
### Expected behavior
Transformes applied to a QNode should influence the values output by `qml.specs()`.
### Actual behavior
Very similar to the (now fixed) bug https://github.com/PennyLaneAI/pennylane/issues/5275, this does not seem to happen.
### Additional infor... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index e28571f3d..f76d6850b 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -269,6 +269,9 @@
* The qchem docs are updated with the new qchem improvements.
[(#5758)](https://github.com/PennyLaneAI/pennylane/pu... |
PennyLaneAI__pennylane-5793 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "pennylane/ops/qutrit/__init__.py"
},
{
"changes": {
"added_entities": [
"pennylane/ops/qutrit/channel.py:QutritChannel.__init__",
... | PennyLaneAI/pennylane | 8a51dda34ddc50a4ad303eb9cf46226dedf4a84d | Add a QutritChannel operation
### Feature details
Version 0.36 of PennyLane includes a [`"default.qutrit.mixed"`](https://docs.pennylane.ai/en/latest/code/api/pennylane.devices.default_qutrit_mixed.DefaultQutritMixed.html) device that is capable of simulating [qutrit systems](https://pennylane.ai/qml/demos/tutorial_... | diff --git a/doc/introduction/operations.rst b/doc/introduction/operations.rst
index ac7e23efc..bb978640d 100644
--- a/doc/introduction/operations.rst
+++ b/doc/introduction/operations.rst
@@ -509,6 +509,7 @@ Qutrit noisy channels
~pennylane.QutritDepolarizingChannel
~pennylane.QutritAmplitudeDamping
~pe... |
PennyLaneAI__pennylane-5831 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/op_math/exp.py:Exp.simplify"
],
"edited_modules": [
"pennylane/ops/op_math/exp.py:Exp"
]
},
"file": "pennylane/ops/op_math/exp.py"
}
] | PennyLaneAI/pennylane | d65f671326b71bd9e755a157ec913af31888934b | [BUG] `qml.simplify` removes information regarding `num_steps` from `Exp`
### Expected behavior
``` py
>>> op1 = qml.exp(qml.Z(0) + 1.2*qml.Z(1), -1.2j, num_steps=2)
>>> qml.simplify(op1).num_steps
2
```
### Actual behavior
``` py
>>> op1 = qml.exp(qml.Z(0) + 1.2*qml.Z(1), -1.2j, num_steps=2)
>>> qml.simplify(... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 12959fa66..8c23238f7 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -369,6 +369,9 @@
* Fixed a bug where `split_non_commuting` raises an error when the circuit contains measurements of observables that a... |
PennyLaneAI__pennylane-5835 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/identity.py:Identity.pow"
],
"edited_modules": [
"pennylane/ops/identity.py:Identity"
]
},
"file": "pennylane/ops/identity.py"
},
{
"changes": {
... | PennyLaneAI/pennylane | 45f8d4a3456d2a669da37b77342b58def94e00fa | [BUG] `qml.Adjoint` and `qml.Pow` do not commute when exponent is fractional
### Expected behavior
Taking the `qml.adjoint()` of a powered-operator, i.e. an operator resulting from `qml.pow`, returns the same result whether we use `lazy=True` or `lazy=False` in `qml.adjoint()`.
### Actual behavior
Setting the flag `... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 17acd824f..6c89bfe1c 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -323,6 +323,10 @@
<h3>Bug fixes 🐛</h3>
+* Fixes a bug where fractional powers and adjoints of operators were commuted, which is
+ ... |
PennyLaneAI__pennylane-5846 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/qaoa/layers.py:_diagonal_terms",
"pennylane/qaoa/layers.py:cost_layer",
"pennylane/qaoa/layers.py:mixer_layer"
],
"edited_modules": [
"pennylane/qaoa/layers... | PennyLaneAI/pennylane | 2252d453cfeb62f8aafc454a9513a87f614db533 | [BUG] QAOA layers incorrectly forbid `Sum` observables
### Expected behavior
A `Sum` observable should be treated just like a legacy hamiltonian object or a new `LinearCombination` object.
### Actual behavior
The `QAOA` layers manually raise an error during a validation step, forbidding `Sum` and other multi-term op... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 25cefac72..5b2896486 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -326,6 +326,9 @@
<h3>Bug fixes 🐛</h3>
+* `qml.qaoa.cost_layer` and `qml.qaoa.mixer_layer` can now be used with `Sum` operators.
+ ... |
PennyLaneAI__pennylane-5851 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/ops/functions/equal.py:_equal_operators"
],
"edited_modules": [
"pennylane/ops/functions/equal.py:_equal_operators"
]
},
"file": "pennylane/ops/functions/equa... | PennyLaneAI/pennylane | 9b3060fd56e1e65a0d69a27b8a13583ce716a538 | [BUG] Incorrect answers from qml.var due to sum hashing
### Expected behavior
Given some circuit like this,
```
dev = qml.device("default.qubit", wires=3)
@qml.qnode(dev)
def circuit_separated():
qml.RX(np.pi / 3, 0)
qml.RZ(np.pi / 3, 0)
return [
qml.var(qml.Z(0)), qml.var(qml.X(0))
... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index f944e02b5..847bcf3d6 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -341,6 +341,10 @@
<h3>Bug fixes 🐛</h3>
+* Fixes a bug where `Sum`'s with repeated identical operations ended up with the same hash... |
PennyLaneAI__pennylane-5857 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/transforms/core/transform_dispatcher.py:TransformDispatcher._qfunc_transform"
],
"edited_modules": [
"pennylane/transforms/core/transform_dispatcher.py:TransformDispatcher"... | PennyLaneAI/pennylane | cc954890bfd49b5173bddcd3015069d52b619412 | Broadcast Expand Prevents Torchlayer from detecting Inputs Argument
### Expected behavior
The torchlayer should be created successfully without any errors. This works fine if the broadcast expand function decorator "@qml.transforms.broadcast_expand" is commented out from the minimal code provided.
### Actual beha... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index 11e431fa3..19dcc314a 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -264,6 +264,9 @@
* `qml.qchem.molecular_dipole` function is added for calculating the dipole operator using "dhf" and "openfermion" bac... |
PennyLaneAI__pennylane-5860 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pennylane/gradients/hadamard_gradient.py:_expval_hadamard_grad"
],
"edited_modules": [
"pennylane/gradients/hadamard_gradient.py:_expval_hadamard_grad"
]
},
"file": "pe... | PennyLaneAI/pennylane | 248a808a35419caa2b89e4379e2fb3edd11f549b | [BUG] hadamard gradient does not work with wires-broadcasted measurements
### Expected behavior
I would expect `hadamard_grad` to be interchangeable with `param_shift` in cases where there is no explicit error
### Actual behavior
Output gradient is simply `array([0.])`
### Additional information
_No response_
###... | diff --git a/doc/releases/changelog-dev.md b/doc/releases/changelog-dev.md
index e3641f9a5..a9de6a1b3 100644
--- a/doc/releases/changelog-dev.md
+++ b/doc/releases/changelog-dev.md
@@ -415,6 +415,9 @@
<h3>Bug fixes 🐛</h3>
+* Fixes a bug where `hadamard_grad` returned a wrong shape for `qml.probs()` without wires.... |
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