instance_id stringlengths 10 57 | file_changes listlengths 1 15 | repo stringlengths 7 53 | base_commit stringlengths 40 40 | problem_statement stringlengths 11 52.5k | patch stringlengths 251 7.06M |
|---|---|---|---|---|---|
Bogdanp__django_dramatiq-170 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"django_dramatiq/management/commands/rundramatiq.py:Command.add_arguments"
],
"edited_modules": [
"django_dramatiq/management/commands/rundramatiq.py:Command"
]
},
"file... | Bogdanp/django_dramatiq | e005c31684efd38cf7ffa82bcea3d82161e313b1 | `rundramatiq` thread count defaults to `CPU_COUNT`
If an explicit thread count is not supplied to `rundramatiq`, it defaults to `CPU_COUNT`. This is inconsistent with the `dramatiq` cli, which is `8`. This seems like a sensible default, as the threads param is threads _per process_. Should the `rundramatiq` default be ... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 3d3c397..c5629bb 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -6,6 +6,25 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
## Unreleased
+### Chang... |
BouchardLab__process_nwb-17 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"process_nwb/wavelet_transform.py:wavelet_transform",
"process_nwb/wavelet_transform.py:store_wavelet_transform"
],
"edited_modules": [
"process_nwb/wavelet_transform.py:wavel... | BouchardLab/process_nwb | 19704f1cb5a03187366910d83164346d1c75fcd9 | Add ability to just calculate and save HG. | diff --git a/docs/source/introduction.rst b/docs/source/introduction.rst
index 1c1e025..283bb73 100644
--- a/docs/source/introduction.rst
+++ b/docs/source/introduction.rst
@@ -8,3 +8,12 @@ Processing ECoG stored in the NWB format
ECoG data stored in the Neurodata Without Borders (NWB) format. It
contains low-level s... |
BrandonLMorris__auacm-cli-11 | [
{
"changes": {
"added_entities": [
"src/auacm/competition.py:get_one_comp",
"src/auacm/competition.py:_cid_from_name"
],
"added_modules": [
"src/auacm/competition.py:get_one_comp",
"src/auacm/competition.py:_cid_from_name"
],
"edited_entities": [
... | BrandonLMorris/auacm-cli | 5c13a4843e281aa1470d2bd28fe39c07f4e39e92 | List recent and ongoing competitions
A `comp[etition]` command that will simply list (chronologically) the recent and ongoing competitions. | diff --git a/src/auacm/competition.py b/src/auacm/competition.py
index f2d9561..794f8a4 100644
--- a/src/auacm/competition.py
+++ b/src/auacm/competition.py
@@ -1,6 +1,6 @@
"""Subcommands related to competitions"""
-import auacm, requests, textwrap
+import auacm, requests, textwrap, argparse
from datetime import da... |
BurnzZ__scrapy-loader-upkeep-3 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"scrapy_loader_upkeep/loader.py:ItemLoader.get_selector_values",
"scrapy_loader_upkeep/loader.py:ItemLoader.write_to_stats"
],
"edited_modules": [
"scrapy_loader_upkeep/loader... | BurnzZ/scrapy-loader-upkeep | 0b36309d1c9ea814e097e06e9d7220cfef6e6f9e | Allow paths to be named
When having several amounts of xpaths for each field, is really difficult to determine which one was added firsts, specially when there are different workflows on the code.
To make easier the task to identify the paths on the stats, it would be great if we could name them. For example:
```... | diff --git a/README.rst b/README.rst
index 6fb0e87..3112d48 100644
--- a/README.rst
+++ b/README.rst
@@ -58,8 +58,8 @@ This only works for the following ``ItemLoader`` methods:
- ``add_xpath()``
- ``replace_xpath()``
-Spider Example
-~~~~~~~~~~~~~~
+Basic Spider Example
+~~~~~~~~~~~~~~~~~~~~
This is taken fr... |
CDCgov__PyRenew-482 | [
{
"changes": {
"added_entities": [
"pyrenew/math.py:_positive_ints_like",
"pyrenew/math.py:neg_MGF",
"pyrenew/math.py:neg_MGF_del_r",
"pyrenew/math.py:r_approx_from_R"
],
"added_modules": [
"pyrenew/math.py:_positive_ints_like",
"pyrenew/math.py:... | CDCgov/PyRenew | bbaf1b9b629d861ba534dd5b4c5693f84676bfe8 | Add infection initialization at stable age distribution given R | diff --git a/pyrenew/math.py b/pyrenew/math.py
index db94200..b8bfd74 100755
--- a/pyrenew/math.py
+++ b/pyrenew/math.py
@@ -12,6 +12,146 @@ from jax.typing import ArrayLike
from pyrenew.distutil import validate_discrete_dist_vector
+def _positive_ints_like(vec: ArrayLike) -> jnp.ndarray:
+ """
+ Given an ar... |
CDCgov__cfa-viral-lineage-model-51 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"linmod/data.py:main"
],
"edited_modules": [
"linmod/data.py:main"
]
},
"file": "linmod/data.py"
},
{
"changes": {
"added_entities": [
"linmod/eval... | CDCgov/cfa-viral-lineage-model | 060d63ef58c3d6ed310c15593aad0475df4a1f43 | Syncing lineages between model and eval data
I'm looking at the pair of `model.csv` and `eval.csv` for a 2022-01-01 forecast date, and the evaluation data has one more lineage than the model data, namely `22C`. We need to make sure that the set of lineages is consistent across modeling and evaluation.
Part of the aw... | diff --git a/README.md b/README.md
index 5580414..95758a3 100644
--- a/README.md
+++ b/README.md
@@ -57,17 +57,6 @@ Rows are uniquely identified by `(fd_offset, division, lineage, sample_index)`.
- [ ] (9) Study more on how to set priors on the logit scale to induce priors on the probability simplex
- [ ] (10) Does o... |
CLOVER-energy__CLOVER-96 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/clover/simulation/storage.py:get_electric_battery_storage_profile"
],
"edited_modules": [
"src/clover/simulation/storage.py:get_electric_battery_storage_profile"
]
},
... | CLOVER-energy/CLOVER | 38b1c3e63dc6fb3db8f1406fa8f32db8b39cc71c | Prioitise self-generation bug
### Describe the bug
When running CLOVER, there are two possible flows for how the code selects its source of power, which are set within the `scenario_inputs.yaml` file:
- `prioiritise_self_generation: true`, where CLOVER should attempt to get power from the solar and storage first,
- ... | diff --git a/src/clover/simulation/storage.py b/src/clover/simulation/storage.py
index 9b4a58a..44061d6 100644
--- a/src/clover/simulation/storage.py
+++ b/src/clover/simulation/storage.py
@@ -640,16 +640,43 @@ def get_electric_battery_storage_profile( # pylint: disable=too-many-locals, to
grid_energy = p... |
CMakePP__CMinx-151 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/cminx/aggregator.py:DefinitionCommand.__init__",
"src/cminx/aggregator.py:DocumentationAggregator.__init__",
"src/cminx/aggregator.py:DocumentationAggregator.process_function",
... | CMakePP/CMinx | ea6d33ebc88237c5f2dd3a1d166d7bc4b078223f | Add a regex filter for parameter names to make longer names more readable
**Is your feature request related to a problem? Please describe.**
A regex filter was requested in discussions for https://github.com/CMakePP/CMakeTest/issues/5
| diff --git a/docs/source/developer/api.rst b/docs/source/developer/api.rst
index a397b37..e836a7e 100644
--- a/docs/source/developer/api.rst
+++ b/docs/source/developer/api.rst
@@ -25,10 +25,12 @@ Python Modules
.. autosummary::
:toctree: .autosummary
-
- cminx.rstwriter
- cminx.documenter
cminx.aggregat... |
CODAIT__exchange-metadata-converter-25 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"metadata_converter/apply.py:replace"
],
"edited_modules": [
"metadata_converter/apply.py:replace"
]
},
"file": "metadata_converter/apply.py"
},
{
"changes": {
... | CODAIT/exchange-metadata-converter | a5432d877fe947a12c169d2d84c22e034d555289 | Support optional properties
Currently all `{{...}}` placeholders in https://github.com/CODAIT/exchange-metadata-converter/tree/main/templates are considered to be required and therefore each placeholder input file must define them. Annotations would solve this issue. Investigate what it takes to support something like ... | diff --git a/metadata_converter/apply.py b/metadata_converter/apply.py
index f20d451..34cd14f 100644
--- a/metadata_converter/apply.py
+++ b/metadata_converter/apply.py
@@ -16,6 +16,8 @@
from argparse import ArgumentParser
from pathlib import Path
from ruamel.yaml import YAML
+from ruamel.yaml.tokens import CommentT... |
CODAIT__exchange-metadata-converter-38 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "setup.py"
}
] | CODAIT/exchange-metadata-converter | c306552b0a2fc25f868cfc7daee7b26a1c99f31b | Non-compliant metadata.name in the generated DLF YAML
The `metadata.name` in the generated DLF YAML does not comply with the Kubernetes spec for DNS-1123 subdomain names.
```JSON
{
"kind": "Status",
"apiVersion": "v1",
"metadata": {},
"status": "Failure",
"message": "Dataset.com.ie.ibm.hpsys \"Fina... | diff --git a/setup.py b/setup.py
index 1e62eb5..afb9bf4 100644
--- a/setup.py
+++ b/setup.py
@@ -22,7 +22,7 @@ with open('README.md') as readme:
setup(
name='exchange-metadata-converter',
packages=find_packages(),
- version='0.0.8',
+ version='0.0.9',
license='Apache-2.0',
description='exchange metadata ... |
CORE-GATECH-GROUP__serpent-tools-100 | [
{
"changes": {
"added_entities": [
"serpentTools/objects/containers.py:isNonNeg",
"serpentTools/objects/containers.py:HomogUniv.__str__",
"serpentTools/objects/containers.py:BranchContainer.hasDays"
],
"added_modules": [
"serpentTools/objects/containers.py:isNon... | CORE-GATECH-GROUP/serpent-tools | 433d55710b85805c9dee609ad77f81bc3c202b72 | Universes from branching file can be stored with negative burnup
## Summary of issue
The burnup values in coefficient files can be negative, indicating units of days, not MWd/kgU
[Link to SERPENT coef card](http://serpent.vtt.fi/mediawiki/index.php/Input_syntax_manual#coef_.28coefficient_matrix_definition.29). This l... | diff --git a/docs/examples/Branching.rst b/docs/examples/Branching.rst
index 32e10ca..7544198 100644
--- a/docs/examples/Branching.rst
+++ b/docs/examples/Branching.rst
@@ -1,3 +1,9 @@
+.. |branchReader| replace:: :py:class:`~serpentTools.parsers.branching.BranchingReader`
+
+.. |branchContainer| replace:: :py:class:`~... |
CORE-GATECH-GROUP__serpent-tools-141 | [
{
"changes": {
"added_entities": [
"serpentTools/objects/containers.py:HomogUniv.reshaped"
],
"added_modules": null,
"edited_entities": [
"serpentTools/objects/containers.py:HomogUniv.__init__",
"serpentTools/objects/containers.py:HomogUniv.addData"
],
... | CORE-GATECH-GROUP/serpent-tools | d96de5b0f4bc4c93370cf508e0ea89701054ff41 | [Feature] Auto-reshape scattering matrices for homogenized universes
Implement a setting that will automatically reshape scattering matrices for homogenized universes. This should be done in such a way that both the BranchingReader and ResultsReader honor this request.
Possibly a setting like `xs.reshapeScatter`? | diff --git a/docs/defaultSettings.rst b/docs/defaultSettings.rst
index aa16202..8893098 100644
--- a/docs/defaultSettings.rst
+++ b/docs/defaultSettings.rst
@@ -206,6 +206,19 @@ If true, store the infinite medium cross sections.
Type: bool
+.. _xs-reshapeScatter:
+
+---------------------
+``xs.reshapeScatter``... |
CORE-GATECH-GROUP__serpent-tools-154 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"serpentTools/objects/containers.py:HomogUniv.numGroups",
"serpentTools/objects/containers.py:HomogUniv.numMicroGroups"
],
"edited_modules": [
"serpentTools/objects/containers... | CORE-GATECH-GROUP/serpent-tools | 911894d67eb9677c4430a1aee91e9d1461ffc44b | [BUG] number of groups stored as a float; causes reshape scatter matrices to fail
## Summary of issue
The `addData` routine stores the number of energy groups as a float. This causes numpy to fail during the reshaping of scattering matrices.
## Code for reproducing the issue
```
import serpentTools
from serpentToo... | diff --git a/serpentTools/objects/containers.py b/serpentTools/objects/containers.py
index 8c30e1b..bcc9103 100644
--- a/serpentTools/objects/containers.py
+++ b/serpentTools/objects/containers.py
@@ -35,8 +35,8 @@ for xsSpectrum, xsType in product({'INF', 'B1'},
for xx in range(SCATTER_ORDERS)... |
CORE-GATECH-GROUP__serpent-tools-220 | [
{
"changes": {
"added_entities": [
"serpentTools/messages.py:addHandler",
"serpentTools/messages.py:removeHandler",
"serpentTools/messages.py:DictHandler.__init__",
"serpentTools/messages.py:DictHandler.flush",
"serpentTools/messages.py:DictHandler.close",
"... | CORE-GATECH-GROUP/serpent-tools | 9429173b3a7a42bad6e4e0b791f8456f99eb606a | Determine and implement a way to test our message/logging systems
Working on the comparison feature, I realize we don't have a way to ensure that our logging system is actually logging what we want. This is more relevant for the testing the comparison utilities, and making sure that we are correctly notifying the user ... | diff --git a/docs/develop/logging.rst b/docs/develop/logging.rst
index 8f36e03..c5c061c 100644
--- a/docs/develop/logging.rst
+++ b/docs/develop/logging.rst
@@ -31,3 +31,10 @@ or removed in the future.
.. autofunction:: serpentTools.messages.willChange
+
+Custom Handlers
+===============
+
+.. autoclass:: serpentT... |
CORE-GATECH-GROUP__serpent-tools-243 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"serpentTools/parsers/results.py:ResultsReader._storeUnivData"
],
"edited_modules": [
"serpentTools/parsers/results.py:ResultsReader"
]
},
"file": "serpentTools/parsers/... | CORE-GATECH-GROUP/serpent-tools | 67846baca60f959ac92bdf208e6f1c6744688890 | [BUG] ResultsReader fails when only group constants are requested
## Summary of issue
When restricting the scope of the variables extracted from the results file to only group constants, the reader fails.
It is also worth noting that, when non-group constant data are requested as well, 'ABS_KEFF' and 'INF_FLX', fo... | diff --git a/serpentTools/parsers/results.py b/serpentTools/parsers/results.py
index d46a7fd..095cb6c 100644
--- a/serpentTools/parsers/results.py
+++ b/serpentTools/parsers/results.py
@@ -183,9 +183,10 @@ class ResultsReader(XSReader):
"""Process universes' data"""
brState = self._getBUstate() # obt... |
CORE-GATECH-GROUP__serpent-tools-288 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"serpentTools/parsers/results.py:ResultsReader._storeResData",
"serpentTools/parsers/results.py:ResultsReader._getBUstate",
"serpentTools/parsers/results.py:ResultsReader.getUniv"
]... | CORE-GATECH-GROUP/serpent-tools | 1c730ef70c6f9ce98247e1d8b935d3bb98366e4a | Universes in results reader are not zero-indexed
## Summary of issue
The first index for universes is 1, likely taken directly from the result file burnup index. This misconstrues some of the style and pythonicness of the layout, as python arrays start at 0.
## Code for reproducing the issue
Read a result file wit... | diff --git a/docs/changelog.rst b/docs/changelog.rst
index dd57dbc..90d13c3 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -39,6 +39,15 @@ Next
The API for the |branchCollector| may be subject to change
through revisions until ``0.7.0``
+Incompatible API Changes
+------------------------
+
+* |ho... |
CORE-GATECH-GROUP__serpent-tools-289 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"serpentTools/objects/base.py:DetectorBase"
]
},
"file": "serpentTools/objects/base.py"
},
{
"changes": {
"added_entities": null,
"added_mo... | CORE-GATECH-GROUP/serpent-tools | 85f47bd559fdc8b1bef3bdea7d64db4a1c5b6271 | [API] Detector tallies of a single bin are difficult to work with
## Summary of issue
When using a detector w/ a single bin, e.g. one group flux, the bin data in the output file is a single bin. Rather than a proper array, these are floats cast into array form. Indexing doesn't work, but you can get the "values" by co... | diff --git a/docs/changelog.rst b/docs/changelog.rst
index 90d13c3..f7dec84 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -47,6 +47,9 @@ Incompatible API Changes
burnup step was one. All burnup indices are now decreased by
one. Similarly, if no burnup was present in the file, the
values of burnup... |
CORE-GATECH-GROUP__serpent-tools-306 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"serpentTools/utils/core.py:str2vec"
],
"edited_modules": [
"serpentTools/utils/core.py:str2vec"
]
},
"file": "serpentTools/utils/core.py"
}
] | CORE-GATECH-GROUP/serpent-tools | fb197b44d97ef3ae24d95662dcbdeb1cd9e9694e | BUG ADFs in results file fail in numeric conversion
## Summary of issue
When reading a file with assembly discontinuity factors (ADFs), there is a string that serpentTools attempts to convert to a vector. This causes a ValueError
## Code for reproducing the issue
Add the following code to a section of a result file
... | diff --git a/serpentTools/utils/core.py b/serpentTools/utils/core.py
index e56468e..c1b35ad 100644
--- a/serpentTools/utils/core.py
+++ b/serpentTools/utils/core.py
@@ -4,7 +4,7 @@ Core utilities
from re import compile
-from numpy import array, ndarray
+from numpy import array, ndarray, fromiter
# Regular exp... |
CORE-GATECH-GROUP__serpent-tools-321 | [
{
"changes": {
"added_entities": [
"serpentTools/objects/containers.py:_BranchContainerUnivDict.__getitem__",
"serpentTools/objects/containers.py:_BranchContainerUnivDict.get"
],
"added_modules": [
"serpentTools/objects/containers.py:_BranchContainerUnivDict"
],
... | CORE-GATECH-GROUP/serpent-tools | b3f3c39609319985f7047dd6fed52654e285cd0b | Support for non-integer named universes for branching reader
## Summary of issue
Serpent 2 allows universe names to be quite generic string literals. However, the branching reader of serpentTools only seems to support universe names that are integers.
This seems to be related to the int conversion on line 113 of ... | diff --git a/docs/changelog.rst b/docs/changelog.rst
index 706620d..97aee8a 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -21,6 +21,16 @@ Bug fixes
---------
* Tally data for detectors with time-bins are properly handled - :issue:`312`
+* Support for generic string universe names for |BranchingReader|... |
CORE-GATECH-GROUP__serpent-tools-346 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"serpentTools/parsers/results.py:ResultsReader.__init__",
"serpentTools/parsers/results.py:ResultsReader._read",
"serpentTools/parsers/results.py:ResultsReader._getBUstate",
"serp... | CORE-GATECH-GROUP/serpent-tools | 09a5feab5b95f98aef4f7dc7b07edbf8e458f955 | BUG Burnup and day values wrong for results with multiple gcu, no burnup
## Summary of issue
When reading a result file with multiple homogenized universes and no burnup, the homogenized universes have incorrect values of burnup and days.
## Code for reproducing the issue
Reading a file with four homogenized univ... | diff --git a/docs/changelog.rst b/docs/changelog.rst
index 2c68415..5e70766 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -13,6 +13,12 @@ Next
* |HomogUniv| objects no longer automatically convert data to arrays
* Serpent 2.1.31 is the default version for :ref:`serpentVersion` setting
+Bug Fixes
+----... |
CORE-GATECH-GROUP__serpent-tools-377 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"serpentTools/parsers/detector.py:DetectorReader._read"
],
"edited_modules": [
"serpentTools/parsers/detector.py:DetectorReader"
]
},
"file": "serpentTools/parsers/detec... | CORE-GATECH-GROUP/serpent-tools | 3d11b98046c48eb8a1c625e1dd534bc3af0a7be6 | BUG DetectorReader misses detectors that start with and contain identical names
## Summary of issue
A colleague has a detector file with the following energy dependent detectors: `spectrum`, `spectrumA`, and `spectrumB`. The DetectorReader fails to capture the later two detectors, and messes up the data stored on `spe... | diff --git a/docs/changelog.rst b/docs/changelog.rst
index e651937..3862113 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -6,6 +6,18 @@
Changelog
=========
+.. _v0.9.2:
+
+0.9.2
+=====
+
+.. _v0.9.2-bugs:
+
+Bug Fixes
+---------
+
+* Detector reader can handle sequential detectors with very similar
+ ... |
CORE-GATECH-GROUP__serpent-tools-412 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"serpentTools/parsers/depletion.py:DepletionReader._addMetadata"
],
"edited_modules": [
"serpentTools/parsers/depletion.py:DepletionReader"
]
},
"file": "serpentTools/pa... | CORE-GATECH-GROUP/serpent-tools | a69471eb211a18768aa55c695be906e006b4b4a6 | BUG ResultsReader drops last digit of scalar data
## Summary of issue
When reading a result file, we expect scalar data to have a space between the last digit and the colon due to
https://github.com/CORE-GATECH-GROUP/serpent-tools/blob/dd886ff2b2cd19e8dc681245134cef8815d61f31/serpentTools/utils/core.py#L14 and https:... | diff --git a/serpentTools/parsers/depletion.py b/serpentTools/parsers/depletion.py
index aa730d8..6e5e05a 100644
--- a/serpentTools/parsers/depletion.py
+++ b/serpentTools/parsers/depletion.py
@@ -262,7 +262,7 @@ class DepletionReader(DepPlotMixin, MaterialReader):
if varName == 'NAMES':
... |
CORE-GATECH-GROUP__serpent-tools-447 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "serpentTools/settings.py"
}
] | CORE-GATECH-GROUP/serpent-tools | f7eb3e1c843f7d2506fe7ffa378584d7602a3bb9 | ENH Support Serpent 2.1.32
**Is your feature request related to a problem? Please describe.**
Warning messages like
```
WARN SERPENT Serpent 2.1.32 found in godiva_res.m, but version 2.1.31 is defined in settings
Attemping to read anyway. Please report strange behaviors/failures to developers.
```
(also a typo)... | diff --git a/docs/variableGroups.rst b/docs/variableGroups.rst
index 8b2fd56..723a8a5 100644
--- a/docs/variableGroups.rst
+++ b/docs/variableGroups.rst
@@ -30,19 +30,227 @@ variable names converted to ``mixedCaseNames``. This conversion is done
to fit the style of the project and reduce a few keystrokes for accessing... |
CORE-GATECH-GROUP__serpent-tools-456 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"serpentTools/objects/xsdata.py:XSData.__init__"
],
"edited_modules": [
"serpentTools/objects/xsdata.py:XSData"
]
},
"file": "serpentTools/objects/xsdata.py"
},
{
... | CORE-GATECH-GROUP/serpent-tools | e8cd0943cafd7f1cbc5f5a74fabf652097a12777 | Can't Parse Cross Section Data From Serpent 2.1.32
## Summary of issue
I am getting `ValueError: Unidentifiable entry` when trying to load my `*_xs0.m` file, because `serpentTools` doesn't know what to do with entries suffixed by `pspec`. These appear to be new to Serpent 2.1.32, and the code runs fine when I manuall... | diff --git a/docs/changelog.rst b/docs/changelog.rst
index 5f652a4..5da1ed1 100644
--- a/docs/changelog.rst
+++ b/docs/changelog.rst
@@ -16,6 +16,10 @@ Changelog
.. _v0.9.4:
+0.9.4rc1
+========
+* Support for reading ``pspec`` fields in xsplot files
+
:release-tag:`0.9.4rc0`
====================
diff --git a/s... |
CS-SI__eodag-1108 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway._prune_providers_list"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
]
},
"file": "eodag/api/core.py"
},
{
... | CS-SI/eodag | e619c88de826047b8f46f4485ca5537a58e60678 | move external python apis and server to extras_require
Get external python apis out of `install_requires` (`usgs`, `ecmwf-api-client`), in order to keep `eodag` core as light as possible. Also move server mode the same way.
Raise a well formatted error message if the external api is needed:
```
Access to ECMWF dat... | diff --git a/README.rst b/README.rst
index 0eff4243..441dd1c6 100644
--- a/README.rst
+++ b/README.rst
@@ -84,6 +84,9 @@ And with ``conda`` from the `conda-forge channel <https://anaconda.org/conda-for
conda install -c conda-forge eodag
+Please note that EODAG comes with a minimal set of dependencies. If you wa... |
CS-SI__eodag-1262 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/apis/usgs.py:UsgsApi.query"
],
"edited_modules": [
"eodag/plugins/apis/usgs.py:UsgsApi"
]
},
"file": "eodag/plugins/apis/usgs.py"
}
] | CS-SI/eodag | f7efdd09236091864c16b46822730cf1b97317c9 | USGS Search by ID lists many products instead of just the matching one
When I try to use `eodag.search` method with setting the `id` parameter, it lists many (millions) of products instead of just the product matching the ID, and the only work around I found is to iterate through all the pages and look for the matching... | diff --git a/eodag/plugins/apis/usgs.py b/eodag/plugins/apis/usgs.py
index 2e552f0b..d4ecf61f 100644
--- a/eodag/plugins/apis/usgs.py
+++ b/eodag/plugins/apis/usgs.py
@@ -172,11 +172,39 @@ class UsgsApi(Api):
max_results=items_per_page,
starting_number=(1 + (page - 1) * items_per_page)... |
CS-SI__eodag-1271 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/apis/usgs.py:UsgsApi.query",
"eodag/plugins/apis/usgs.py:UsgsApi.download"
],
"edited_modules": [
"eodag/plugins/apis/usgs.py:UsgsApi"
]
},
"file"... | CS-SI/eodag | 97b7b6f881714b4c40029a174c2539085cd50868 | rename camelCase parameters and methods
Rename:
- `sortBy` to `sortby`
- `orderDownload` to `order_download`
- `orderDownloadStatus` to `order_download_status` | diff --git a/docs/notebooks/api_user_guide/4_search.ipynb b/docs/notebooks/api_user_guide/4_search.ipynb
index c131f344..ac416c2b 100644
--- a/docs/notebooks/api_user_guide/4_search.ipynb
+++ b/docs/notebooks/api_user_guide/4_search.ipynb
@@ -2140,14 +2140,14 @@
"cell_type": "markdown",
"metadata": {},
"sou... |
CS-SI__eodag-1338 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/download/http.py:HTTPDownload.order_download"
],
"edited_modules": [
"eodag/plugins/download/http.py:HTTPDownload"
]
},
"file": "eodag/plugins/download/ht... | CS-SI/eodag | 1a1a40f4c4ec7d7672aa917fa0d6a28326df25da | Raise an error when a request to a backend provider fails
When a request to a provider such as cop_ads fails because of a malformed request (e.g. providing a date range with an end date before the start date), eodag logs the error, which may be unnotified by the user. Instead it should raise an error. | diff --git a/docs/plugins_reference/auth.rst b/docs/plugins_reference/auth.rst
index 8f4b0206..fbad669f 100644
--- a/docs/plugins_reference/auth.rst
+++ b/docs/plugins_reference/auth.rst
@@ -9,6 +9,8 @@ Multiple authentication plugins can be defined per provider under ``auth``, ``se
using *matching settings* :attr:`~e... |
CS-SI__eodag-1357 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway._search_by_id",
"eodag/api/core.py:EODataAccessGateway._do_search"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
... | CS-SI/eodag | cdee784fa2d227c8e908610422140188df4ed142 | Support geodes provider
Support geodes provider : https://geodes.cnes.fr/migration-de-peps-vers-geodes/
Deprecate peps provider
Add geodes provider
| diff --git a/docs/getting_started_guide/providers.rst b/docs/getting_started_guide/providers.rst
index 55b28631..d3bc844e 100644
--- a/docs/getting_started_guide/providers.rst
+++ b/docs/getting_started_guide/providers.rst
@@ -23,6 +23,7 @@ Products from the following providers are made avaiable through ``eodag``:
S... |
CS-SI__eodag-1536 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/config.py:provider_config_init"
],
"edited_modules": [
"eodag/config.py:provider_config_init"
]
},
"file": "eodag/config.py"
}
] | CS-SI/eodag | b7cc06e19025e5bbf14e28a0975f1749e21e9be3 | Geodes & Geodes_s3 have the same key in pre release 3.1.0b2
**Describe the bug**
- The latest pre-release adds geodes_s3 for internal access the CNES data lake
- The latest provider config uses the same key
```
- geodes:
priority: # Lower value means lower priority (Default: 0)
search: # Search parameters conf... | diff --git a/eodag/config.py b/eodag/config.py
index 0ceb1f1f..db5ae7a0 100644
--- a/eodag/config.py
+++ b/eodag/config.py
@@ -779,6 +779,7 @@ def provider_config_init(
and provider_config.search.type
in [
"StacSearch",
+ "StacListAssets",
"Stat... |
CS-SI__eodag-1551 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/apis/usgs.py:UsgsApi.authenticate"
],
"edited_modules": [
"eodag/plugins/apis/usgs.py:UsgsApi"
]
},
"file": "eodag/plugins/apis/usgs.py"
}
] | CS-SI/eodag | 643cb3c0e6228ebf83ba01bf38a80b05162a7ab4 | deprecated usgs login endpoint to login-token endpoint
The current `login` endpoint, which is used for authentication within the API, will be deprecated in February of 2025. Users are encouraged to create one or more M2M Application Tokens and to transition to using the `login-token` endpoint in lieu of the current `lo... | diff --git a/docs/_static/params_mapping_extra.csv b/docs/_static/params_mapping_extra.csv
index c048a7cf..ba9cdbb3 100644
--- a/docs/_static/params_mapping_extra.csv
+++ b/docs/_static/params_mapping_extra.csv
@@ -1,17 +1,14 @@
parameter,cop_ads,cop_cds,cop_dataspace,cop_ewds,cop_marine,creodias,dedt_lumi,earth_searc... |
CS-SI__eodag-190 | [
{
"changes": {
"added_entities": [
"eodag/api/core.py:EODataAccessGateway.search_iter_page",
"eodag/api/core.py:EODataAccessGateway.search_all",
"eodag/api/core.py:EODataAccessGateway._prepare_search"
],
"added_modules": null,
"edited_entities": [
"eodag/a... | CS-SI/eodag | af9afc8f4e21f6af129c10a1763fb560ac0dfbe2 | Search for all the products matching some criteria with a given provider
We have had a lot of discussions on a private GitLab instance before we moved to GitHub about how to search/download all the products matching some criteria.
The problems we observed with the current API were:
* The method `search` returns a t... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 4655c3e3..6b84203c 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -59,6 +59,10 @@ logger = logging.getLogger("eodag.core")
# pagination defaults
DEFAULT_PAGE = 1
DEFAULT_ITEMS_PER_PAGE = 20
+# Default maximum number of items per page requested by se... |
CS-SI__eodag-200 | [
{
"changes": {
"added_entities": [
"eodag/api/core.py:EODataAccessGateway.search_iter_page",
"eodag/api/core.py:EODataAccessGateway.search_all",
"eodag/api/core.py:EODataAccessGateway._prepare_search"
],
"added_modules": null,
"edited_entities": [
"eodag/a... | CS-SI/eodag | af9afc8f4e21f6af129c10a1763fb560ac0dfbe2 | Improve the signature of setup_logging
Which is currently
```python
def setup_logging(**kwargs):
```
while:
```python
def setup_logging(verbose=None):
```
would be more explicit.
To make it exactly backwards compatible we'd need to raise a KeyError if called with `setup_logging()`. I don't expect anyone to r... | diff --git a/CHANGES.rst b/CHANGES.rst
index 59bcdfc1..9998e581 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -1,6 +1,11 @@
Release history
---------------
+2.2.0 (2021-xx-xx)
+++++++++++++++++++
+
+- More explicit signature for ``setup_logging``, fixes `GH-197 <https://github.com/CS-SI/eodag/issues/197>`_
+
2.1.1... |
CS-SI__eodag-201 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.guess_product_type"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
]
},
"file": "eodag/api/core.py"
}
] | CS-SI/eodag | ab1c1054e802d7a25980c331eb19a1c48f1ffc53 | guess_product_type doesn't return all the matching products
The method `Searcher.search()` of *whoosh* [accepts a `limit` parameter](https://whoosh.readthedocs.io/en/latest/searching.html#the-searcher-object) that can be set to `None` to get all the results. By default `limit` is set to 10. I think we should set `limit... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 6b84203c..31a214cd 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -428,7 +428,7 @@ class EODataAccessGateway(object):
kwargs[search_key]
)
if results is None:
- results = searche... |
CS-SI__eodag-204 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.guess_product_type"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
]
},
"file": "eodag/api/core.py"
},
{
"... | CS-SI/eodag | ab1c1054e802d7a25980c331eb19a1c48f1ffc53 | Add to the search command the ability to search for all the products matching some criteria
The API will soon get a `search_all` method that will allow to collect at once all the products from a provider that match a set of criteria. The CLI should also benefit from this enhancement. I suggest that we add a `--all` opt... | diff --git a/CHANGES.rst b/CHANGES.rst
index 59bcdfc1..9998e581 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -1,6 +1,11 @@
Release history
---------------
+2.2.0 (2021-xx-xx)
+++++++++++++++++++
+
+- More explicit signature for ``setup_logging``, fixes `GH-197 <https://github.com/CS-SI/eodag/issues/197>`_
+
2.1.1... |
CS-SI__eodag-228 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/download/aws.py:AwsDownload.download"
],
"edited_modules": [
"eodag/plugins/download/aws.py:AwsDownload"
]
},
"file": "eodag/plugins/download/aws.py"
}
... | CS-SI/eodag | fec965f791a74dbf658e0833e1507b7ac950d09d | Sentinel SAFE / non-SAFE product types distinction
All providers do not provide Sentinel products in SAFE format, which means for example that searching `S2_MSI_L1C` products on `peps` or `astraea_eod` can return products packaged differently, and differently formatted ids.
We should add more product types to be abl... | diff --git a/eodag/plugins/download/aws.py b/eodag/plugins/download/aws.py
index 84fc9ea9..2f0b132d 100644
--- a/eodag/plugins/download/aws.py
+++ b/eodag/plugins/download/aws.py
@@ -163,6 +163,12 @@ class AwsDownload(Download):
def download(self, product, auth=None, progress_callback=None, **kwargs):
"""... |
CS-SI__eodag-244 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.download"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
]
},
"file": "eodag/api/core.py"
},
{
"changes": ... | CS-SI/eodag | 0632e4147f26119bea43e0672f6d06e75d216a20 | Inconsistent filepaths returned by the download methods
`download_all` returns for instance:
```python
['/home/maxime/TRAVAIL/06_EODAG/01_eodag/eodag/docs/notebooks/api_user_guide/eodag_workspace_download/S2A_MSIL1C_20201229T110451_N0209_R094_T31TCL_20201229T131620/S2A_MSIL1C_20201229T110451_N0209_R094_T31TCL_2020122... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 6efceb2a..1e91f5d9 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -47,6 +47,7 @@ from eodag.utils import (
_deprecated,
get_geometry_from_various,
makedirs,
+ uri_to_path,
)
from eodag.utils.exceptions import (
NoMatchingProduc... |
CS-SI__eodag-248 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.guess_product_type",
"eodag/api/core.py:EODataAccessGateway._prepare_search",
"eodag/api/core.py:EODataAccessGateway.download"
],
"edite... | CS-SI/eodag | 0632e4147f26119bea43e0672f6d06e75d216a20 | Kwargs passed to guess a product type are propagated
A search made with the following criteria guesses that it should use the product type `S2_MSI_L1C`:
```python
from eodag import EODataAccessGateway
dag = EODataAccessGateway()
dag.set_preferred_provider("peps")
search_criteria = {
'start': '2021-03-01',
'e... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 6efceb2a..556d03c9 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -47,6 +47,7 @@ from eodag.utils import (
_deprecated,
get_geometry_from_various,
makedirs,
+ uri_to_path,
)
from eodag.utils.exceptions import (
NoMatchingProduc... |
CS-SI__eodag-249 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/download/base.py:Download._finalize"
],
"edited_modules": [
"eodag/plugins/download/base.py:Download"
]
},
"file": "eodag/plugins/download/base.py"
}
] | CS-SI/eodag | 84aac9405cd346a366e7499d043e1e6959a66f30 | Default behaviour for extracting products
I've just used `eodag-sentinelsat` and was surprised to see I had to set the `extract` parameter to a value (True or False). Before that, I never set this value and it seems to me that products were always extracted.
Currently in providers.yml:
* usgs: true
* aws_eos: (irr... | diff --git a/eodag/plugins/download/base.py b/eodag/plugins/download/base.py
index bfcb8ac1..46632f7d 100644
--- a/eodag/plugins/download/base.py
+++ b/eodag/plugins/download/base.py
@@ -199,7 +199,7 @@ class Download(PluginTopic):
"""
extract = kwargs.pop("extract", None)
extract = (
- ... |
CS-SI__eodag-253 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.guess_product_type",
"eodag/api/core.py:EODataAccessGateway._prepare_search",
"eodag/api/core.py:EODataAccessGateway.download"
],
"edite... | CS-SI/eodag | 0632e4147f26119bea43e0672f6d06e75d216a20 | download_all removes the products contained by the passed SearchResult
The items of a `SearchResult` (it could also just be a list of `EOProduct`) passed to `download_all` can get cleared by the method. I observed this behaviour with downloading products from *peps*. If it is the intended behaviour, it should be well d... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 6efceb2a..556d03c9 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -47,6 +47,7 @@ from eodag.utils import (
_deprecated,
get_geometry_from_various,
makedirs,
+ uri_to_path,
)
from eodag.utils.exceptions import (
NoMatchingProduc... |
CS-SI__eodag-254 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.guess_product_type",
"eodag/api/core.py:EODataAccessGateway._prepare_search",
"eodag/api/core.py:EODataAccessGateway.download"
],
"edite... | CS-SI/eodag | 0632e4147f26119bea43e0672f6d06e75d216a20 | Error while downloading a quicklook in a directory where the product has already been downloaded and extracted
It might be an edge case but I got caught by this one.
```
Traceback (most recent call last):
File "/home/maxime/TRAVAIL/06_EODAG/01_eodag/eodag/snippet_quicklook_peps.py", line 20, in <module>
pro... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 6efceb2a..556d03c9 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -47,6 +47,7 @@ from eodag.utils import (
_deprecated,
get_geometry_from_various,
makedirs,
+ uri_to_path,
)
from eodag.utils.exceptions import (
NoMatchingProduc... |
CS-SI__eodag-257 | [
{
"changes": {
"added_entities": [
"eodag/api/product/metadata_mapping.py:MetadataFormatter.convert_datetime_to_timestamp_milliseconds"
],
"added_modules": null,
"edited_entities": [
"eodag/api/product/metadata_mapping.py:MetadataFormatter.convert_utc_to_timestamp_millise... | CS-SI/eodag | d18287d37a7deb98457d7068402218983150c7f8 | ISO8601 formatted time fails on some providers
Time formatted using ISO8601 (`yyyy-MM-ddThh:mm:ss.SSSZ`) fails for some providers like `sobloo` or `astraea_eod`, when `yyyy-MM-ddThh:mm:ss` is ok.
Fix is needed to make both work | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 25fe07bb..8cd4814c 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -487,9 +487,13 @@ class EODataAccessGateway(object):
:param raise_errors: When an error occurs when searching, if this is set to
True, the error ... |
CS-SI__eodag-260 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.guess_product_type",
"eodag/api/core.py:EODataAccessGateway._prepare_search",
"eodag/api/core.py:EODataAccessGateway.download"
],
"edite... | CS-SI/eodag | 0632e4147f26119bea43e0672f6d06e75d216a20 | providers chaining for search
Actually, if a productType is not available for a provider, eodag will use the first matching provider with the highest priority.
We can keep this behavior, and add the `search(providers=["theia"])` feature (see also #163 ).
- this code will still look for products in the 1st available... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 6efceb2a..92e4b6f5 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -47,6 +47,7 @@ from eodag.utils import (
_deprecated,
get_geometry_from_various,
makedirs,
+ uri_to_path,
)
from eodag.utils.exceptions import (
NoMatchingProduc... |
CS-SI__eodag-367 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/product/metadata_mapping.py:MetadataFormatter.convert_to_rounded_wkt",
"eodag/api/product/metadata_mapping.py:MetadataFormatter.convert_to_bounds_lists",
"eodag/api/product/met... | CS-SI/eodag | 3963758fc5fda86da4799a26eb64fbc610c444da | implement STAC API Query fragment
For STAC providers, STAC API Item Search has limited filtering capabilities (`collections`, `ids`, `bbox` / `intersects`, `datetime`).
However, it does not contain a formalized way to filter based on arbitrary fields in an Item. For example, there is no way to express the filter *"`... | diff --git a/docs/_static/params_mapping_extra.csv b/docs/_static/params_mapping_extra.csv
index b677c5ad..cf6647c4 100644
--- a/docs/_static/params_mapping_extra.csv
+++ b/docs/_static/params_mapping_extra.csv
@@ -10,7 +10,7 @@ herbaceousCover,,,:green:`queryable metadata`,,,,,,,,,
iceCover,,,:green:`queryable metada... |
CS-SI__eodag-380 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway._do_search"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
]
},
"file": "eodag/api/core.py"
}
] | CS-SI/eodag | 6e6e6890a52ac8ad4d0f989f41a726b35d9cf5d8 | prevent mixed results between earth_search and earth_search_cog
See #362 .
@GriffinBabe pointed out that if we omit to specify the product type when searching on `earth_search_cog`, we get also results from `earth_search` that cannot be downloaded with the wrong download plugin:
```py
from eodag import EODataAcces... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 0ce2f7fe..7d5d039b 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -17,6 +17,7 @@
# limitations under the License.
import logging
import os
+import re
import shutil
from operator import itemgetter
@@ -1055,6 +1056,31 @@ class EODataAccessGateway(... |
CS-SI__eodag-381 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.download_all"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
]
},
"file": "eodag/api/core.py"
},
{
"change... | CS-SI/eodag | df05c353836883546e47db4057123ac501e003c6 | download_all callback
**[Original report](https://bitbucket.org/geostorm/eodag/issue/121) by me.**
----------------------------------------
When using download_all, provide the availability to launch a callback when each individual download in finished
| diff --git a/docs/api_reference/utils.rst b/docs/api_reference/utils.rst
index dec68622..315bf26f 100644
--- a/docs/api_reference/utils.rst
+++ b/docs/api_reference/utils.rst
@@ -10,9 +10,10 @@ Logging
.. automodule:: eodag.utils.logging
:members:
-Progress callback
+Callbacks
-----------------
+.. autofuncti... |
CS-SI__eodag-405 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/download/aws.py:AwsDownload.download",
"eodag/plugins/download/aws.py:AwsDownload.check_manifest_file_list",
"eodag/plugins/download/aws.py:AwsDownload.finalize_s2_safe_pro... | CS-SI/eodag | d9f16f411fdf5eb6ad752f984782dd06ed882dc8 | finalize_s2_safe_product: Fails when missing manifest.safe
When downloading some products on `earth_search`, I have a problem when converting the product format to `.SAFE`:
![2022-02-22_14h48_... | diff --git a/eodag/plugins/download/aws.py b/eodag/plugins/download/aws.py
index 3202c76a..fe7d3573 100644
--- a/eodag/plugins/download/aws.py
+++ b/eodag/plugins/download/aws.py
@@ -253,11 +253,17 @@ class AwsDownload(Download):
bucket_names_and_prefixes = [self.get_bucket_name_and_prefix(product)]
... |
CS-SI__eodag-458 | [
{
"changes": {
"added_entities": [
"eodag/api/search_result.py:SearchResult.filter_online"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"eodag/api/search_result.py:SearchResult"
]
},
"file": "eodag/api/search_result.py"
}
] | CS-SI/eodag | 909354f089a3e08e810a194a10ce54858b26e6f6 | Avoid trying to order an OFFLINE product
From @remi-braun in https://github.com/CS-SI/eodag/issues/214
> Maybe add the LTA order as a parameter, as it is not needed in every usecase (sometimes, sb just want to download everything he can without triggering any LTA retrieval)
LTA: Long Term Archive
The `HTTPDown... | diff --git a/docs/api_reference/searchresult.rst b/docs/api_reference/searchresult.rst
index cb845cfe..7957cf0b 100644
--- a/docs/api_reference/searchresult.rst
+++ b/docs/api_reference/searchresult.rst
@@ -22,6 +22,7 @@ Crunch
SearchResult.filter_latest_by_name
SearchResult.filter_overlap
SearchResult.filt... |
CS-SI__eodag-490 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/product/_product.py:EOProduct.download"
],
"edited_modules": [
"eodag/api/product/_product.py:EOProduct"
]
},
"file": "eodag/api/product/_product.py"
}
] | CS-SI/eodag | 0a782d7f476a993170f7d60c006be09b4cfa2b47 | progress bar and int id
If product id is an integer, it makes download progress bar crash:
```py
>>> from eodag import EODataAccessGateway ... | diff --git a/eodag/api/product/_product.py b/eodag/api/product/_product.py
index 683870ba..45162a1f 100644
--- a/eodag/api/product/_product.py
+++ b/eodag/api/product/_product.py
@@ -282,7 +282,7 @@ class EOProduct(object):
# update units as bar may have been previously used for extraction
pro... |
CS-SI__eodag-508 | [
{
"changes": {
"added_entities": [
"eodag/plugins/apis/usgs.py:UsgsApi.authenticate"
],
"added_modules": null,
"edited_entities": [
"eodag/plugins/apis/usgs.py:UsgsApi.query",
"eodag/plugins/apis/usgs.py:UsgsApi.download",
"eodag/plugins/apis/usgs.py:UsgsA... | CS-SI/eodag | b57fc768c1a08e1e255b8fa44b3785255bc8ca23 | Add S2_MSI_L1C productType to the USGS provider
When trying to download Sentinel2 images using the USGS provider, the "S2_MSI_L1C" product type is not recognized, even though it is available using the earth explorer website.
It would be great to add this one (and more precisely in my case I'd like that because I onl... | diff --git a/eodag/plugins/apis/usgs.py b/eodag/plugins/apis/usgs.py
index 5a7162bd..ecf1b113 100644
--- a/eodag/plugins/apis/usgs.py
+++ b/eodag/plugins/apis/usgs.py
@@ -19,6 +19,7 @@ import copy
import logging
import shutil
import tarfile
+import zipfile
import requests
from jsonpath_ng.ext import parse
@@ -35... |
CS-SI__eodag-524 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/download/aws.py:AwsDownload.get_bucket_name_and_prefix"
],
"edited_modules": [
"eodag/plugins/download/aws.py:AwsDownload"
]
},
"file": "eodag/plugins/dow... | CS-SI/eodag | 58335e728fff5b98bd85b96fead271429773a593 | Capella Bucket Download issue
**Bucket Issue**
Hi there, I'm trying to download Capella's Open data from
[this stac index]](https://www.stacindex.org/catalogs/capella-space-open-data#/BrVjRL9LGRjg8ipuaKLhdHr1kD4sbvyd8QTYGwbMTTtkR4fzPd4yeiApxyrQkiq/LGziSG3zruu42mUQkBqrXkRPLdBZyfQ9WBqmakLW8v6Q2jtwGXLNgDPJyeVfFR6XkZHa8... | diff --git a/eodag/plugins/download/aws.py b/eodag/plugins/download/aws.py
index e27ffe9c..e5d9d2a9 100644
--- a/eodag/plugins/download/aws.py
+++ b/eodag/plugins/download/aws.py
@@ -34,7 +34,12 @@ from eodag.api.product.metadata_mapping import (
properties_from_xml,
)
from eodag.plugins.download.base import Dow... |
CS-SI__eodag-545 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.download"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
]
},
"file": "eodag/api/core.py"
}
] | CS-SI/eodag | 837c127b5068fd87a99b875206b95d44e48fdb50 | accepts all file URI formats
EODAG should support `file:/path/to/file` formatting the same way it already supports `file:///path/to/file`.
See https://datatracker.ietf.org/doc/html/rfc8089#appendix-B | diff --git a/eodag/api/core.py b/eodag/api/core.py
index cd5d696b..a88a3212 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -1708,7 +1708,7 @@ class EODataAccessGateway(object):
If the metadata mapping for ``downloadLink`` is set to something that can be
interpreted as a link on a
l... |
CS-SI__eodag-554 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/search/qssearch.py:QueryStringSearch.do_search"
],
"edited_modules": [
"eodag/plugins/search/qssearch.py:QueryStringSearch"
]
},
"file": "eodag/plugins/se... | CS-SI/eodag | 12e3cdc83bb46a2384b2821e28833b0fdb15c799 | Connection timeout bug in search API
**Describe the bug**
No result from provider 'creodias' due to an error during the search.
`urllib3.exceptions.ConnectTimeoutError: (<urllib3.connection.HTTPSConnection object at 0x7f0614fa07f0>, 'Connection to finder.creodias.eu timed out. (connect timeout=5)')`
Timeout er... | diff --git a/eodag/plugins/search/qssearch.py b/eodag/plugins/search/qssearch.py
index f349b760..a9625b53 100644
--- a/eodag/plugins/search/qssearch.py
+++ b/eodag/plugins/search/qssearch.py
@@ -597,8 +597,7 @@ class QueryStringSearch(Search):
"instance:".format(self.provider, self.__class__.__name... |
CS-SI__eodag-566 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/download/http.py:HTTPDownload._download_assets"
],
"edited_modules": [
"eodag/plugins/download/http.py:HTTPDownload"
]
},
"file": "eodag/plugins/download/... | CS-SI/eodag | 9af685574aa465456bca01f245b830b324db2c5c | http asset filesize using GET method
Following #542, in `HTTPDownload` try getting asset filesize from header while downloading with GET method if the filesize could not be obtained with HEAD method (`total_size == 0`). Implement something like:
```py
if total_size == 0:
asset_size = parse_header(asset_content_d... | diff --git a/eodag/plugins/download/http.py b/eodag/plugins/download/http.py
index 58fe8a89..9b9b66ba 100644
--- a/eodag/plugins/download/http.py
+++ b/eodag/plugins/download/http.py
@@ -252,6 +252,9 @@ class HTTPDownload(Download):
assets_urls = [
a["href"] for a in getattr(product, "assets", {})... |
CS-SI__eodag-576 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/download/aws.py:AwsDownload.download"
],
"edited_modules": [
"eodag/plugins/download/aws.py:AwsDownload"
]
},
"file": "eodag/plugins/download/aws.py"
},... | CS-SI/eodag | 73e95cb6407329faf860cb775e1dd61838e6a2c4 | NITF files are not downloaded
**Describe the bug**
I don't know if its intended, but some STAC catalog have.... .ntf files 🙄, and eodag doesn't download them
For example, all [SICD Capella products](https://www.stacindex.org/catalogs/capella-space-open-data#/item/2fCZzY4MUXqhFCKQyCHq5xs9yKEtav6SUMVtn8XotXoG3UL99iGK... | diff --git a/eodag/plugins/download/aws.py b/eodag/plugins/download/aws.py
index e5d9d2a9..8c28dcce 100644
--- a/eodag/plugins/download/aws.py
+++ b/eodag/plugins/download/aws.py
@@ -19,7 +19,6 @@
import logging
import os
import re
-import shutil
from pathlib import Path
import boto3
@@ -36,6 +35,7 @@ from eodag... |
CS-SI__eodag-586 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/product/_product.py:EOProduct.register_downloader"
],
"edited_modules": [
"eodag/api/product/_product.py:EOProduct"
]
},
"file": "eodag/api/product/_product.p... | CS-SI/eodag | 3465afe00a492e73bfd517f19c409ba21196f85f | percent variables parsing error in product location
If product location contains some percent variables, it may conflict with `register_downloader()` internal parsing mechanism and raise:
```
Traceback (most recent call last):
File "/usr/local/lib/python3.8/dist-packages/eodag/api/core.py", line 1474, in _do_searc... | diff --git a/eodag/api/product/_product.py b/eodag/api/product/_product.py
index 777b3026..a0a3d78c 100644
--- a/eodag/api/product/_product.py
+++ b/eodag/api/product/_product.py
@@ -221,15 +221,30 @@ class EOProduct(object):
"""
self.downloader = downloader
self.downloader_auth = authenticat... |
CS-SI__eodag-588 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/authentication/token.py:TokenAuth.authenticate"
],
"edited_modules": [
"eodag/plugins/authentication/token.py:TokenAuth"
]
},
"file": "eodag/plugins/authe... | CS-SI/eodag | c91cba779c1913985640b99e2c019c9c000bb4a0 | TokenAuth should raise AuthenticationError
In `TokenAuth`, catch `RequestException` the same way as it was done for https://github.com/CS-SI/eodag/pull/555 and redirect to an `AuthenticationError` | diff --git a/eodag/plugins/authentication/header.py b/eodag/plugins/authentication/header.py
index 48d27cf9..0913296d 100644
--- a/eodag/plugins/authentication/header.py
+++ b/eodag/plugins/authentication/header.py
@@ -22,7 +22,7 @@ from eodag.plugins.authentication import Authentication
class HTTPHeaderAuth(Authe... |
CS-SI__eodag-592 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/product/metadata_mapping.py:MetadataFormatter.convert_csv_list"
],
"edited_modules": [
"eodag/api/product/metadata_mapping.py:MetadataFormatter"
]
},
"file": ... | CS-SI/eodag | 870580e4565e533838a1b3c1b2acd2edd335de11 | Add keywords to discovered product types
Automatically add default keywords to discovered product types to help finding them using [guess_product_type()](https://eodag.readthedocs.io/en/stable/api_reference/core.html#eodag.api.core.EODataAccessGateway.guess_product_type).
See also [Guess a product type documentation]... | diff --git a/eodag/api/product/metadata_mapping.py b/eodag/api/product/metadata_mapping.py
index e449a643..3f014290 100644
--- a/eodag/api/product/metadata_mapping.py
+++ b/eodag/api/product/metadata_mapping.py
@@ -302,7 +302,10 @@ def format_metadata(search_param, *args, **kwargs):
@staticmethod
de... |
CS-SI__eodag-616 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/product/metadata_mapping.py:properties_from_json"
],
"edited_modules": [
"eodag/api/product/metadata_mapping.py:properties_from_json"
]
},
"file": "eodag/api/... | CS-SI/eodag | 4a0d68987de913040e0ba16f9fe1d00cd10fe6e5 | onda search optimize with expand=Metadata
Avoid per-product metadata query using https://catalogue.onda-dias.eu/dias-catalogue/Products?$expand=Metadata link documented in
https://www.onda-dias.eu/cms/knowledge-base/odata-querying-products-showing-all-metadata-together-with-their-properties/.
Use a new `ODataV4Sea... | diff --git a/docs/_static/params_mapping_opensearch.csv b/docs/_static/params_mapping_opensearch.csv
index 3e98c49f..053fe5dc 100644
--- a/docs/_static/params_mapping_opensearch.csv
+++ b/docs/_static/params_mapping_opensearch.csv
@@ -8,7 +8,7 @@ antennaLookDirection,,,,,,,,,metadata only,,,,metadata only,
archivingCe... |
CS-SI__eodag-634 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/utils/__init__.py:flatten_top_directories"
],
"edited_modules": [
"eodag/utils/__init__.py:flatten_top_directories"
]
},
"file": "eodag/utils/__init__.py"
}
] | CS-SI/eodag | 69d24e856d04abbf44a81786b67cc26e98d43ee5 | flatten_top_directories on single file
The following error is raised when trying to use `flatten_top_directories()` on a directory containing a single file or when downloading a product having a single asset and the download plugin configured with `flatten_top_dirs: true`:
```
Traceback (most recent call last):
Fi... | diff --git a/eodag/utils/__init__.py b/eodag/utils/__init__.py
index 35841aaf..d968c733 100644
--- a/eodag/utils/__init__.py
+++ b/eodag/utils/__init__.py
@@ -1148,6 +1148,9 @@ def flatten_top_directories(nested_dir_root, common_subdirs_path=None):
subpaths_list = [p for p in Path(nested_dir_root).glob("**/*")... |
CS-SI__eodag-645 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/plugins/authentication/token.py:TokenAuth.validate_config_credentials",
"eodag/plugins/authentication/token.py:TokenAuth.authenticate"
],
"edited_modules": [
"eodag/plu... | CS-SI/eodag | 216edc2a7e22676ecfcbc77b71795fc319cb3dc4 | 404 error when trying to download mundi OFFLINE product
```py
from eodag import EODataAccessGateway
dag = EODataAccessGateway()
prods, _ = dag.search(productType="S2_MSI_L1C", start="2019-01-01", end="2019-02-01")
print("storageStatus: %s" % prods[0].properties["storageStatus"])
dag.download(prods[0])
```
output... | diff --git a/eodag/plugins/authentication/token.py b/eodag/plugins/authentication/token.py
index 9419f85c..75151f22 100644
--- a/eodag/plugins/authentication/token.py
+++ b/eodag/plugins/authentication/token.py
@@ -36,6 +36,11 @@ class TokenAuth(Authentication):
self.config.auth_uri = self.config.auth_uri.... |
CS-SI__eodag-751 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/rest/utils.py:download_stac_item_by_id"
],
"edited_modules": [
"eodag/rest/utils.py:download_stac_item_by_id"
]
},
"file": "eodag/rest/utils.py"
}
] | CS-SI/eodag | 92a537f7811a06f336712de6b8c07a9b80cf6de6 | Impossible to download data with providers using api plugin in REST mode
In REST mode, when a provider does not get the download plugin, data download fails with the following error :
`AttributeError: 'ProviderConfig' object has no attribute 'download'`
| diff --git a/eodag/rest/utils.py b/eodag/rest/utils.py
index de5d168a..e9955275 100644
--- a/eodag/rest/utils.py
+++ b/eodag/rest/utils.py
@@ -589,8 +589,6 @@ def download_stac_item_by_id(catalogs, item_id, provider=None):
product = search_product_by_id(item_id, product_type=catalogs[0])[0]
- eodag_api.prov... |
CS-SI__eodag-756 | [
{
"changes": {
"added_entities": [
"eodag/plugins/authentication/keycloak.py:KeycloakOIDCPasswordAuth.validate_config_credentials"
],
"added_modules": null,
"edited_entities": [
"eodag/plugins/authentication/keycloak.py:KeycloakOIDCPasswordAuth.authenticate"
],
... | CS-SI/eodag | c38d36ec0be2c490d04060030c10726ecf327972 | better document how to guess a product type
see https://github.com/CS-SI/eodag/issues/242#issuecomment-877068032
- [x] Add more examples showing how to guess the product type in https://eodag.readthedocs.io/en/latest/notebooks/api_user_guide/4_search.html#Guess-a-product-type
- [x] Link the `guess_product_type()` met... | diff --git a/docker/stac-server.dockerfile b/docker/stac-server.dockerfile
index 543e1ea8..f7fb4b6c 100644
--- a/docker/stac-server.dockerfile
+++ b/docker/stac-server.dockerfile
@@ -65,7 +65,7 @@ RUN chmod +x /eodag/run-stac-server.sh
# add user
RUN addgroup --system user \
- && adduser --system --group user
+ ... |
CS-SI__eodag-757 | [
{
"changes": {
"added_entities": [
"eodag/plugins/authentication/keycloak.py:KeycloakOIDCPasswordAuth.validate_config_credentials"
],
"added_modules": null,
"edited_entities": [
"eodag/plugins/authentication/keycloak.py:KeycloakOIDCPasswordAuth.authenticate"
],
... | CS-SI/eodag | c38d36ec0be2c490d04060030c10726ecf327972 | downloadLink usage for STAC providers
Implement a way to use `downloadLink` if specified, to dowload a product coming from a STAC provider
- [ ] remove or set `downloadLink` to `None` by default on STAC providers
- [ ] if `downloadLink` exists, first try using it before downloading all assets
`ignore_assets` can... | diff --git a/docker/stac-server.dockerfile b/docker/stac-server.dockerfile
index 543e1ea8..f7fb4b6c 100644
--- a/docker/stac-server.dockerfile
+++ b/docker/stac-server.dockerfile
@@ -65,7 +65,7 @@ RUN chmod +x /eodag/run-stac-server.sh
# add user
RUN addgroup --system user \
- && adduser --system --group user
+ ... |
CS-SI__eodag-763 | [
{
"changes": {
"added_entities": [
"eodag/plugins/authentication/keycloak.py:KeycloakOIDCPasswordAuth.validate_config_credentials"
],
"added_modules": null,
"edited_entities": [
"eodag/plugins/authentication/keycloak.py:KeycloakOIDCPasswordAuth.authenticate"
],
... | CS-SI/eodag | c38d36ec0be2c490d04060030c10726ecf327972 | [URGENT] Unable to download products from CreoDIAS due to authentification change
**Describe the bug**
When searching for Sentinel-1 GRD products with CreoDIAS as a provider, the `download` command returns an error.
It seems than CreoDIAS has recently updated their website (see new website "[CreoDIAS 2.0](https://c... | diff --git a/docs/getting_started_guide/configure.rst b/docs/getting_started_guide/configure.rst
index 7c2b22ad..2193594a 100644
--- a/docs/getting_started_guide/configure.rst
+++ b/docs/getting_started_guide/configure.rst
@@ -246,3 +246,62 @@ Or with the CLI:
-p S2_MSI_L1C \
--storage... |
CS-SI__eodag-790 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.search",
"eodag/api/core.py:EODataAccessGateway._search_by_id",
"eodag/api/core.py:EODataAccessGateway._prepare_search"
],
"edited_modul... | CS-SI/eodag | 9acf017451f71c5488011f3add086a9936cfffc8 | [eodag-server] setting provider parameter in a request, default this provider as preferred for future requests
**Describe the bug**
A clear and concise description of what the bug is.
You first request a product type from a specific provider to EODAG Server.
This provider is set as the preferred one for all future... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 0d589122..9b394f4a 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -832,6 +832,7 @@ class EODataAccessGateway(object):
end=None,
geom=None,
locations=None,
+ provider=None,
**kwargs,
):
"""Look fo... |
CS-SI__eodag-795 | [
{
"changes": {
"added_entities": [
"eodag/rest/server.py:list_queryables",
"eodag/rest/server.py:list_collection_queryables"
],
"added_modules": [
"eodag/rest/server.py:list_queryables",
"eodag/rest/server.py:list_collection_queryables"
],
"edited_en... | CS-SI/eodag | 2eb52b8300e3859712c74412a97d15181865ce97 | server mode queryables
Add queryables, available through `/queryables` and `/collections/<PRODUCT_TYPE>/queryables`.
See https://github.com/radiantearth/stac-api-spec/blob/master/fragments/filter/README.md#queryables for documentation and https://planetarycomputer.microsoft.com/api/stac/v1/collections/sentinel-2-l2a... | diff --git a/eodag/rest/server.py b/eodag/rest/server.py
index 57cc4381..541da3a8 100755
--- a/eodag/rest/server.py
+++ b/eodag/rest/server.py
@@ -18,11 +18,12 @@
import io
import logging
import os
+import re
import traceback
from contextlib import asynccontextmanager
from distutils import dist
from json.decoder... |
CS-SI__eodag-802 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.search",
"eodag/api/core.py:EODataAccessGateway.search_iter_page",
"eodag/api/core.py:EODataAccessGateway.search_all",
"eodag/api/core.py:EO... | CS-SI/eodag | 4b1397bfdc79b0b9be0be3fc825df40949f4acae | prevent authentication during search preparation
Following https://github.com/CS-SI/eodag/pull/753, authentication is performed for all providers needing auth for search in `_prepare_search()`.
Only auth plugin should be passed as argument, and authentication should be performed before search for the given provider. | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 9b394f4a..bff4f2cc 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -20,6 +20,7 @@ import os
import re
import shutil
from operator import itemgetter
+from typing import List
import geojson
import pkg_resources
@@ -45,6 +46,7 @@ from eodag.config i... |
CS-SI__eodag-836 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/config.py:load_default_config",
"eodag/config.py:load_config"
],
"edited_modules": [
"eodag/config.py:load_default_config",
"eodag/config.py:load_config"
... | CS-SI/eodag | db336ebe9e3359bc3549e546948ef59c54b632ae | configure providers.yml path
Implement a way to configure where `providers.yml` is located.
- through a environment variable | diff --git a/docs/getting_started_guide/configure.rst b/docs/getting_started_guide/configure.rst
index c7814106..ac0559c5 100644
--- a/docs/getting_started_guide/configure.rst
+++ b/docs/getting_started_guide/configure.rst
@@ -20,10 +20,10 @@ for products in a provider's catalog, how to download products, etc. However,... |
CS-SI__eodag-918 | [
{
"changes": {
"added_entities": [
"eodag/plugins/download/http.py:HTTPDownload._check_product_filename"
],
"added_modules": null,
"edited_entities": [
"eodag/plugins/download/http.py:HTTPDownload.orderDownload",
"eodag/plugins/download/http.py:HTTPDownload.order_... | CS-SI/eodag | 4286d132c8500c968a82445c2e3509216c4a1e65 | staging status in server mode download
When downloading an OFFLINE product in server mode, use min values for `wait` and `time` and return a 202 status until product is available | diff --git a/eodag/plugins/download/http.py b/eodag/plugins/download/http.py
index 140f1e12..c1b03a36 100644
--- a/eodag/plugins/download/http.py
+++ b/eodag/plugins/download/http.py
@@ -130,7 +130,7 @@ class HTTPDownload(Download):
product: EOProduct,
auth: Optional[AuthBase] = None,
**kwarg... |
CS-SI__eodag-927 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.__init__"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
]
},
"file": "eodag/api/core.py"
}
] | CS-SI/eodag | 72e7a48eba23f7debb89903f31d67555b53fcbce | EODataAccessGateway constructor fails on AWS Lambda
**Describe the bug**
`makedirs` [invocation](https://github.com/CS-SI/eodag/blob/develop/eodag/api/core.py#L98) within the EODataAccessGateway constructor causes `OSError: [Errno 30] Read-only file system` when run on AWS Lambda
**Code To Reproduce**
CLI comman... | diff --git a/docs/_static/product_types_information.csv b/docs/_static/product_types_information.csv
index 21b10020..61464555 100644
--- a/docs/_static/product_types_information.csv
+++ b/docs/_static/product_types_information.csv
@@ -28,10 +28,10 @@ CLMS_GLO_GDMP_333M,"Gross dry matter Productivity (GDMP) is an indica... |
CS-SI__eodag-961 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/rest/stac.py:StacItem.__get_item_list"
],
"edited_modules": [
"eodag/rest/stac.py:StacItem"
]
},
"file": "eodag/rest/stac.py"
}
] | CS-SI/eodag | 0dcc36d255600669d69fd757f7af6d20e5a4faf1 | eodag-authenticated and origin raw assets both available in server mode
In server mode, once #721 is done, make available both eodag-authenticated and origin raw assets using https://github.com/stac-extensions/alternate-assets:
```json
{
"features": [
{
"id": "some-product",
"assets": {
"B01":... | diff --git a/eodag/rest/stac.py b/eodag/rest/stac.py
index 4114e3c5..8f84ddea 100644
--- a/eodag/rest/stac.py
+++ b/eodag/rest/stac.py
@@ -275,20 +275,28 @@ class StacItem(StacCommon):
"href"
] = f"{without_arg_url}?{urlencode(query_dict, doseq=True)}"
- # add origin a... |
CS-SI__eodag-987 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"eodag/api/core.py:EODataAccessGateway.list_queryables"
],
"edited_modules": [
"eodag/api/core.py:EODataAccessGateway"
]
},
"file": "eodag/api/core.py"
},
{
"cha... | CS-SI/eodag | fe2a51497fa806f856e9bbb4e3911e7c78dad17e | convert timeout type when loaded from environment variable
Following #973,
```py
import os
from eodag import EODataAccessGateway
os.environ["EODAG__HYDROWEB_NEXT__SEARCH__TIMEOUT"] = "10"
dag = EODataAccessGateway()
dag.search_all(productType="HYDROWEB_RIVERS")
```
raises
```
Traceback (most recent call la... | diff --git a/eodag/api/core.py b/eodag/api/core.py
index 5bd91ddc..a7a08e78 100644
--- a/eodag/api/core.py
+++ b/eodag/api/core.py
@@ -83,6 +83,7 @@ from eodag.utils.exceptions import (
from eodag.utils.stac_reader import fetch_stac_items
if TYPE_CHECKING:
+ from pydantic.fields import FieldInfo
from shapel... |
CSCfi__beacon-python-26 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "beacon_api/__init__.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"beacon_api/ap... | CSCfi/beacon-python | 49539e81197255007a6978c102b4a7eb1cf16b9f | Differentiate wildcard results
#### Proposed solution
Currently in a wildcard search it is difficult to differentiate between wildcard results, as illustrated.
The idea is to add values in the `info` key to ... | diff --git a/beacon_api/__init__.py b/beacon_api/__init__.py
index f20f8a5..42894f9 100644
--- a/beacon_api/__init__.py
+++ b/beacon_api/__init__.py
@@ -28,4 +28,4 @@ __org_address__ = 'empty'
__org_welcomeUrl__ = 'https://www.csc.fi/'
__org_contactUrl__ = 'empty'
__org_logoUrl__ = 'https://www.csc.fi/documents/1018... |
CSCfi__swift-browser-ui-20 | [
{
"changes": {
"added_entities": [
"swift_browser_ui/middlewares.py:return_error_response"
],
"added_modules": [
"swift_browser_ui/middlewares.py:return_error_response"
],
"edited_entities": [
"swift_browser_ui/middlewares.py:error_middleware"
],
... | CSCfi/swift-browser-ui | 316d76f77f93701289188d0d461d4fc30fdccf96 | Failure to retrieve containers after switching to a a project with no containers
#### Describe the bug
Failure to retrieve containers after switching to a a project with no containers
#### To Reproduce
Steps to reproduce the behaviour:
1. Log in
2.1 If there is a project with some containers available switch to ... | diff --git a/swift_browser_ui/middlewares.py b/swift_browser_ui/middlewares.py
index 3a857ab8..3f08bf77 100644
--- a/swift_browser_ui/middlewares.py
+++ b/swift_browser_ui/middlewares.py
@@ -5,41 +5,40 @@ from aiohttp import web
from .settings import setd
+def return_error_response(error_code):
+ """Return the ... |
CSCfi__swift-browser-ui-21 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "docs/source/conf.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules... | CSCfi/swift-browser-ui | 316d76f77f93701289188d0d461d4fc30fdccf96 | Failure to retrieve containers after switching to a a project with no containers
#### Describe the bug
Failure to retrieve containers after switching to a a project with no containers
#### To Reproduce
Steps to reproduce the behaviour:
1. Log in
2.1 If there is a project with some containers available switch to ... | diff --git a/docs/source/conf.py b/docs/source/conf.py
index 861c746a..c2766881 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -28,7 +28,7 @@ copyright = f'{current_year}, CSC Developers'
author = 'CSC Developers'
# The full version, including alpha/beta/rc tags
-version = release = '0.3.2'
+version ... |
CTFd__ctfcli-148 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"ctfcli/cli/challenges.py:ChallengeCommand.push",
"ctfcli/cli/challenges.py:ChallengeCommand.pull"
],
"edited_modules": [
"ctfcli/cli/challenges.py:ChallengeCommand"
]
... | CTFd/ctfcli | 26bcec897fcc1f5f23c8117e2a225a130a8b0dea | Support Buildkit drivers for image builds
[Buildkit drivers](https://docs.docker.com/build/drivers/) offer a lot of additional features over the default `docker` driver, like multi-arch images and remote builders.
They could be supported by moving tag/push to `docker build --push`, depending on docker buildx which b... | diff --git a/ctfcli/cli/challenges.py b/ctfcli/cli/challenges.py
index b56525c..51755e6 100644
--- a/ctfcli/cli/challenges.py
+++ b/ctfcli/cli/challenges.py
@@ -1,3 +1,4 @@
+import contextlib
import logging
import os
import subprocess
@@ -203,167 +204,253 @@ class ChallengeCommand:
click.secho(f"Could not p... |
CWorthy-ocean__C-Star-219 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cstar/base/input_dataset.py:InputDataset.__init__"
],
"edited_modules": [
"cstar/base/input_dataset.py:InputDataset"
]
},
"file": "cstar/base/input_dataset.py"
},
{... | CWorthy-ocean/C-Star | 3d82b4914f32520568a752924e0ac3cb4252b71d | Avoid copying and modifying a yaml on-disk
> The method first calls `InputDataset.get()` on the yaml file itself, as usual, making a local copy.
Is this a good pattern to enshrine? The whole point of separating the concept of a "case" from a "blueprint" was that the blueprint is the on-disk serialisation format for ... | diff --git a/cstar/base/input_dataset.py b/cstar/base/input_dataset.py
index cd96d80..b60e69d 100644
--- a/cstar/base/input_dataset.py
+++ b/cstar/base/input_dataset.py
@@ -51,11 +51,15 @@ class InputDataset(ABC):
"""
self.source: DataSource = DataSource(location=location, file_hash=file_hash)
- ... |
CWorthy-ocean__C-Star-226 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cstar/base/utils.py:_get_hash_from_checkout_target"
],
"edited_modules": [
"cstar/base/utils.py:_get_hash_from_checkout_target"
]
},
"file": "cstar/base/utils.py"
}
] | CWorthy-ocean/C-Star | 70c35baf4e6664de208500686b5a0a9c1af22e73 | ValueError: supplied checkout_target does not appear to be a valid reference for this repository
Running the first two cells of the example notebook gives
```python
---------------------------------------------------------------------------
ValueError Traceback (most recent call last... | diff --git a/cstar/base/utils.py b/cstar/base/utils.py
index a9078e1..d87d0e1 100644
--- a/cstar/base/utils.py
+++ b/cstar/base/utils.py
@@ -1,5 +1,6 @@
import re
import hashlib
+import warnings
import subprocess
from pathlib import Path
@@ -109,10 +110,9 @@ def _get_hash_from_checkout_target(repo_url: str, check... |
CWorthy-ocean__C-Star-227 | [
{
"changes": {
"added_entities": [
"cstar/base/additional_code.py:AdditionalCode.checkout_target"
],
"added_modules": null,
"edited_entities": [
"cstar/base/additional_code.py:AdditionalCode.__init__"
],
"edited_modules": [
"cstar/base/additional_code.... | CWorthy-ocean/C-Star | 70c35baf4e6664de208500686b5a0a9c1af22e73 | Git information should be read-only
I’m able to alter properties like `roms_base_model.checkout_hash` by assigning to them, when they should probably be read-only properties
| diff --git a/cstar/base/additional_code.py b/cstar/base/additional_code.py
index 1499840..fb3264e 100644
--- a/cstar/base/additional_code.py
+++ b/cstar/base/additional_code.py
@@ -71,7 +71,7 @@ class AdditionalCode:
"""
self.source: DataSource = DataSource(location)
self.subdir: str = subdir... |
Cadair__parfive-146 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"parfive/downloader.py:Downloader._format_results",
"parfive/downloader.py:Downloader._get_http",
"parfive/downloader.py:Downloader._get_ftp"
],
"edited_modules": [
"p... | Cadair/parfive | 293133c9c3d50fdcc90e01b0a9dad8049fc6cd91 | Propagate the URL which is associated with each file path through to the Results object
It would be useful if the `Results` object had a property which mapped input URL to output filename, as the filename is normally provided by the `Content-Disposition` headers on the download request, so is not known to the user at t... | diff --git a/parfive/downloader.py b/parfive/downloader.py
index 540d2b6..4b3a6fe 100644
--- a/parfive/downloader.py
+++ b/parfive/downloader.py
@@ -319,7 +319,8 @@ class Downloader:
elif isinstance(res, Exception):
raise res
else:
- results.append(res)
+ ... |
Cadair__parfive-73 | [
{
"changes": {
"added_entities": [
"parfive/downloader.py:Downloader.simple_download"
],
"added_modules": null,
"edited_entities": [
"parfive/downloader.py:Downloader._get_http",
"parfive/downloader.py:Downloader._http_download_worker"
],
"edited_modul... | Cadair/parfive | ad816aab60ed6a44f916d853fe89ee54c6ac3762 | Add a class method for quick download
If you have an iterable of URLs it should be easy to download all of them in one go, at the moment you have to instantiate `Downloader` call `enqueue_file` for each URL and then call `download`.
It would be nice to add a classmethod which looks like this:
```python
@classmetho... | diff --git a/docs/index.rst b/docs/index.rst
index ee5ad91..1fb093c 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -40,6 +40,11 @@ A simple example is::
dl.enqueue_file("http://data.sunpy.org/sample-data/predicted-sunspot-radio-flux.txt", path="./")
files = dl.download()
+It's also possible to download a l... |
Cadair__parfive-8 | [
{
"changes": {
"added_entities": [
"parfive/downloader.py:Downloader.queued_downloads"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"parfive/downloader.py:Downloader"
]
},
"file": "parfive/downloader.py"
}
] | Cadair/parfive | 349aeab485279d5156500e87654ffff5c3fbbe63 | Way to find number of queued files
It would be nice if `Downloader` could have an attribute that is the number of files queued for download. (just starting to play with this for HelioPy) | diff --git a/parfive/downloader.py b/parfive/downloader.py
index 90e7f52..0c13d2d 100644
--- a/parfive/downloader.py
+++ b/parfive/downloader.py
@@ -89,6 +89,14 @@ class Downloader:
self.http_tokens.put_nowait(Token(i + 1))
self.ftp_tokens.put_nowait(Token(i + 1))
+ @property
+ def que... |
California-Planet-Search__radvel-348 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"radvel/prior.py:EccentricityPrior.__init__"
],
"edited_modules": [
"radvel/prior.py:EccentricityPrior"
]
},
"file": "radvel/prior.py"
}
] | California-Planet-Search/radvel | e4847e576aafc91a30956efc6eeb91e419ac460e | Using a list in EccentricityPrior raises TypeError
Hi,
When using a list to initialize `EccentricityPrior`, I get the following error:
```python
----> 1 radvel.prior.EccentricityPrior([1, 2])
~/astro/radvel/radvel/prior.py in __init__(self, num_planets, upperlims)
96
97 if type(upperlims) == f... | diff --git a/radvel/prior.py b/radvel/prior.py
index b60ff71..eb1d934 100644
--- a/radvel/prior.py
+++ b/radvel/prior.py
@@ -89,10 +89,10 @@ class EccentricityPrior(Prior):
if type(num_planets) == int:
self.planet_list = range(1, num_planets+1)
- npl = len(self.planet_list)
+ ... |
CartoDB__cartoframes-1093 | [
{
"changes": {
"added_entities": [
"cartoframes/data/observatory/category.py:Category.geographies"
],
"added_modules": null,
"edited_entities": [
"cartoframes/data/observatory/category.py:Category.datasets"
],
"edited_modules": [
"cartoframes/data/obse... | CartoDB/cartoframes | a95185bcde797044d5ac10a7ad4cd8a13e87e492 | Catalog by smart classes
Pandas implementation of the catalog doesn't work pretty well because of these two main issues:
- Cannot implement a full extension of the classes without corner cases: https://github.com/CartoDB/cartoframes/issues/1032
- The logic of the classes is delegated to the user and it makes quit... | diff --git a/cartoframes/data/observatory/category.py b/cartoframes/data/observatory/category.py
index 50a36bb6..20b62dc8 100644
--- a/cartoframes/data/observatory/category.py
+++ b/cartoframes/data/observatory/category.py
@@ -1,5 +1,9 @@
from __future__ import absolute_import
+from cartoframes.data.observatory.repo... |
CartoDB__cartoframes-1105 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "cartoframes/data/observatory/__init__.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
... | CartoDB/cartoframes | 73b03157e292b89c8736750883ffce5bd3322380 | Small tweaks to catalog
[x] 1. Return slug at every object with slug. For example, Dataset.slug doesn't work but it appears at dataset.to_dict. We talked about removing slug for the model but I'm regretting it after I've played a little bit with the library.
[x] 2. Dataset.to_dict(): remove summary_jsonb.
[x] 3... | diff --git a/CHANGELOG.md b/CHANGELOG.md
index 980b6e94..113591ed 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -8,10 +8,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
## [Unreleased]
## Added
- Add nested filters for catalog search (#1038, #1069)
+- Get list of catalog enti... |
CartoDB__cartoframes-1272 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"cartoframes/data/observatory/catalog/entity.py:CatalogEntity"
]
},
"file": "cartoframes/data/observatory/catalog/entity.py"
}
] | CartoDB/cartoframes | d42dbbf8f907a6e7e561a7330586bda624f42ddb | [Guides] Discovery of financial data
Include a financial dataset discovery in the Discovery guide. Change title to `Looking for demographics and financial data in the US in the catalog` and include a MC dataset discovery. | diff --git a/cartoframes/data/observatory/catalog/entity.py b/cartoframes/data/observatory/catalog/entity.py
index 8cbe3202..95ce73a5 100644
--- a/cartoframes/data/observatory/catalog/entity.py
+++ b/cartoframes/data/observatory/catalog/entity.py
@@ -33,7 +33,7 @@ class CatalogEntity(ABC):
id_field = 'id'
_... |
CartoDB__cartoframes-241 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cartoframes/context.py:CartoContext.write",
"cartoframes/context.py:CartoContext.map"
],
"edited_modules": [
"cartoframes/context.py:CartoContext"
]
},
"file": ... | CartoDB/cartoframes | a694cfa6e9f7ff39954ef5045649eb2518632338 | include voyager as a basemap option
e.g.,
```
https://cartodb-basemaps-a.global.ssl.fastly.net/rastertiles/voyager_nolabels/{z}/{x}/{y}.png
``` | diff --git a/cartoframes/context.py b/cartoframes/context.py
index e5885a97..c88bee6f 100644
--- a/cartoframes/context.py
+++ b/cartoframes/context.py
@@ -18,7 +18,7 @@ from carto.sql import SQLClient, BatchSQLClient
from carto.exceptions import CartoException
from .credentials import Credentials
-from .utils impor... |
CartoDB__cartoframes-319 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cartoframes/context.py:CartoContext._geom_type"
],
"edited_modules": [
"cartoframes/context.py:CartoContext"
]
},
"file": "cartoframes/context.py"
},
{
"changes... | CartoDB/cartoframes | 8dcdd8361140d6e087c7301042bd5ba9dc475001 | null column values in styling not handled correctly
Dataset is earthquakes and styling for both color and size is ramp of magnitude (5 bins, equal interval). Null values in the column used for styling are being colored as though they are in the highest color bin using CARTOframes.
:
query=layer.orig_query,
geoms=','.join(g['geom_type'] for g in resp['rows']),... |
CartoDB__cartoframes-368 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cartoframes/layer.py:QueryLayer._setup"
],
"edited_modules": [
"cartoframes/layer.py:QueryLayer"
]
},
"file": "cartoframes/layer.py"
}
] | CartoDB/cartoframes | 6977ce422f9c1ac4e45f70d10438c36b34f52bd9 | extra conditional shows up in cartocss for category torque maps
It maybe happening in others... | diff --git a/cartoframes/layer.py b/cartoframes/layer.py
index f3173cb8..6ddaa641 100644
--- a/cartoframes/layer.py
+++ b/cartoframes/layer.py
@@ -408,7 +408,7 @@ class QueryLayer(AbstractLayer):
]).format(col=self.color, query=self.orig_query)
agg_func = '\'CDB_Math_Mode(cf_value_{})\... |
CartoDB__cartoframes-379 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cartoframes/layer.py:BaseMap.__init__"
],
"edited_modules": [
"cartoframes/layer.py:BaseMap"
]
},
"file": "cartoframes/layer.py"
}
] | CartoDB/cartoframes | 86069f44058986062a2af21ef1f6690864784596 | Update basemap URLs
Basemap URL domains have fastly.net (e.g. here: https://github.com/CartoDB/cartoframes/blob/master/cartoframes/layer.py#L63), this should be replaced by basemaps.cartocdn.com in whole code and tests:
* Old: https://cartodb-basemaps-{s}.global.ssl.fastly.net/
* New: https://{s}.basemaps.cartocdn.co... | diff --git a/cartoframes/layer.py b/cartoframes/layer.py
index 6ddaa641..49143e33 100644
--- a/cartoframes/layer.py
+++ b/cartoframes/layer.py
@@ -60,9 +60,7 @@ class BaseMap(AbstractLayer):
self.source = source
self.labels = labels
- stem = 'https://cartodb-basemaps-{s}.global.ssl.fastly.net... |
CartoDB__cartoframes-445 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cartoframes/credentials.py:Credentials.__init__",
"cartoframes/credentials.py:Credentials._norm_creds",
"cartoframes/credentials.py:Credentials.base_url"
],
"edited_modules":... | CartoDB/cartoframes | b45ab4800eef0ef114ad707887833fd028b54b5a | add base url validation on `https` to ensure all requests occur as expected
`POST api/v1/imports` forwards to `GET api/v1/imports` if the base url is not `https`. This causes some unexpected behaviors and perplexing errors, so we need to add base url validation to ensure all the services work as expected. We can bundle... | diff --git a/README.rst b/README.rst
index a5839a12..7f985b28 100644
--- a/README.rst
+++ b/README.rst
@@ -110,7 +110,7 @@ Get table from CARTO, make changes in pandas, sync updates with CARTO:
.. code:: python
import cartoframes
- # `base_url`s are of the form `http://{username}.carto.com/` for most users
+... |
CartoDB__cartoframes-523 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"cartoframes/context.py:CartoContext._send_batches",
"cartoframes/context.py:CartoContext._set_schema",
"cartoframes/context.py:_dtypes2pg",
"cartoframes/context.py:_pg2dtypes",
... | CartoDB/cartoframes | 8a4341ab6fa63cb8b4f3ac14327cd2670daaa5e1 | don't try to update schema if only columns are cartodb_id / the_geom and/or the_geom_webmercator
If a dataset is written to carto with `CartoContext.write`, the schema will be updated using `alter table alter column` statements. But if the only columns are carto utility columns the_geom and cartodb_id, this schema-upda... | diff --git a/.gitignore b/.gitignore
index 1c419964..963aa610 100644
--- a/.gitignore
+++ b/.gitignore
@@ -32,6 +32,8 @@ wheels/
*.egg-info/
.installed.cfg
*.egg
+Pipfile
+Pipfile.lock
# Swap files
.*.sw[nop]
@@ -40,3 +42,4 @@ wheels/
CARTOCREDS.json
SITEKEY.txt
test/secret.json
+examples/scratch/*
diff --git... |
Ch00k__ffmpy-85 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"ffmpy/ffmpy.py:FFmpeg.__init__",
"ffmpy/ffmpy.py:FFmpeg.run"
],
"edited_modules": [
"ffmpy/ffmpy.py:FFmpeg"
]
},
"file": "ffmpy/ffmpy.py"
}
] | Ch00k/ffmpy | fbe56cb67b317b4457a932c99716ac306fac76f6 | [Feature] Replace subprocess.Popen with psutil.Popen
This is more so to gauge interest in this feature. The `psutil` library is used for finding process information (such as CPU / memory usage) and overall system information. It also provides a wrapper to `subprocess.Popen` in their own `psutil.Popen` that makes tracki... | diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 534b3bb..c3f51c0 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -47,8 +47,10 @@ jobs:
architecture: x64
- run: |
pip install "cryptography<44.0.0" poetry # cryptography 44.0.0 is not compatible ... |
CharJon__GeCO-104 | [
{
"changes": {
"added_entities": [
"geco/mips/scheduling/generic.py:late_tasks_formulation",
"geco/mips/scheduling/generic.py:heinz_formulation"
],
"added_modules": [
"geco/mips/scheduling/generic.py:late_tasks_formulation",
"geco/mips/scheduling/generic.py:hein... | CharJon/GeCO | 23d2fb0889249b003af9dda267e64d7d22f27c89 | More scheduling generators (Hookers c-instances)
Hooker lists additional parameters for generating scheduling instances [here](http://public.tepper.cmu.edu/jnh/instances.htm).
- [ ] c-instances generator
- [ ] check c-instance generation against supplied files (e.g. are the correct ranges [a,b] listed)
| diff --git a/geco/mips/scheduling/generic.py b/geco/mips/scheduling/generic.py
index b695be6..b4919e0 100644
--- a/geco/mips/scheduling/generic.py
+++ b/geco/mips/scheduling/generic.py
@@ -1,6 +1,225 @@
import itertools
from networkx.utils import py_random_state
+from pyscipopt import scip
+
+
+def late_tasks_formu... |
CharJon__GeCO-11 | [
{
"changes": {
"added_entities": [
"geco/mips/facility_location.py:cornuejols_instance",
"geco/mips/facility_location.py:cornuejols_instance_params"
],
"added_modules": [
"geco/mips/facility_location.py:cornuejols_instance",
"geco/mips/facility_location.py:cornu... | CharJon/GeCO | d39ca20573da84b79d58315c7f17e125b24470ff | Make facility location compliant to develop.md
For this the parameter generator needs to be split from the mip generator. | diff --git a/geco/mips/facility_location.py b/geco/mips/facility_location.py
index 7139f3e..e02f2ab 100644
--- a/geco/mips/facility_location.py
+++ b/geco/mips/facility_location.py
@@ -6,7 +6,12 @@ from networkx.utils import py_random_state
@py_random_state(3)
-def capacitated_facility_location(n_customers, n_faci... |
CharJon__GeCO-19 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"geco/mips/facility_location.py:cornuejols_instance_params"
],
"edited_modules": [
"geco/mips/facility_location.py:cornuejols_instance_params"
]
},
"file": "geco/mips/fa... | CharJon/GeCO | e8cf0c229ca7c16edd61d6d2a97df1c9f343ef3d | mips.max_cut: Add tests if seeding works as intended.
There should be some testcases that ensure different seeds are creating different instances. | diff --git a/geco/mips/facility_location.py b/geco/mips/facility_location.py
index 8675a33..f11fb20 100644
--- a/geco/mips/facility_location.py
+++ b/geco/mips/facility_location.py
@@ -93,7 +93,7 @@ def capacitated_facility_location(
return model
-@py_random_state(3)
+@py_random_state(-1)
def cornuejols_insta... |
CharJon__GeCO-83 | [
{
"changes": {
"added_entities": [
"geco/mips/miplib/base.py:Loader._successful_response"
],
"added_modules": null,
"edited_entities": [
"geco/mips/miplib/base.py:Loader._generate_path_for_instance",
"geco/mips/miplib/base.py:Loader._download_instance"
],
... | CharJon/GeCO | 67ae9b29a921e033312dfd30022beed224f2316e | Expand loader functionality to allow downloads from older miplib libraries
Some instances did rotate out of the current miplib completely. To reproduce experiments of older papers it would be nice to be able do download instances from [2010](http://miplib2010.zib.de/miplib2010.php) and [2003](http://miplib2010.zib.de/m... | diff --git a/geco/mips/miplib/base.py b/geco/mips/miplib/base.py
index d0c3cc0..f110683 100644
--- a/geco/mips/miplib/base.py
+++ b/geco/mips/miplib/base.py
@@ -1,11 +1,16 @@
import tempfile
-from urllib.request import urlretrieve
+from urllib.request import urlretrieve, urlopen
+from urllib.error import URLError
imp... |
CharJon__GeCO-9 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"geco/mips/facility_location.py:capacitated_facility_location"
],
"edited_modules": [
"geco/mips/facility_location.py:capacitated_facility_location"
]
},
"file": "geco/m... | CharJon/GeCO | 1d6c60958173ef26b28d5d6288b1cfa120664d48 | Avoid side effects when using random numbers.
Networkx decorator might be usefull. See e.g. [here](https://networkx.org/documentation/stable/reference/randomness.html). | diff --git a/geco/mips/facility_location.py b/geco/mips/facility_location.py
index ec8c2d4..7139f3e 100644
--- a/geco/mips/facility_location.py
+++ b/geco/mips/facility_location.py
@@ -2,8 +2,10 @@ import itertools
import numpy as np
import pyscipopt as scip
+from networkx.utils import py_random_state
+@py_rand... |
CharJon__GeCO-92 | [
{
"changes": {
"added_entities": [
"geco/mips/miplib/base.py:benchmark_instances",
"geco/mips/miplib/base.py:easy_instances",
"geco/mips/miplib/base.py:hard_instances",
"geco/mips/miplib/base.py:open_instances",
"geco/mips/miplib/base.py:custom_list"
],
... | CharJon/GeCO | 0f31ba4453c1037a28ad2f86580e2f5000a26369 | Add convenience wrapper for miplib.
A function to easily get all (easy, hard, open) instances that are (or are not) part of the benchmark set would be nice to have. | diff --git a/geco/mips/miplib/base.py b/geco/mips/miplib/base.py
index 881f9cf..87f27b1 100644
--- a/geco/mips/miplib/base.py
+++ b/geco/mips/miplib/base.py
@@ -3,15 +3,10 @@ from urllib.request import urlretrieve, urlopen
from urllib.error import URLError
import pyscipopt as scip
import os
+import pandas as pd
... |
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