instance_id stringlengths 10 57 | file_changes listlengths 1 15 | repo stringlengths 7 53 | base_commit stringlengths 40 40 | problem_statement stringlengths 11 52.5k | patch stringlengths 251 7.06M |
|---|---|---|---|---|---|
dag-hammarskjold-library__dlx-368 | [
{
"changes": {
"added_entities": [
"dlx/marc/__init__.py:Auth.resolve_ambiguous"
],
"added_modules": null,
"edited_entities": [
"dlx/marc/__init__.py:Marc.resolve_ambiguous",
"dlx/marc/__init__.py:Auth.xlookup_multi"
],
"edited_modules": [
"dlx... | dag-hammarskjold-library/dlx | 0e791ba9d4e2763bc95a812581f573cc205cd314 | Resolving ambiguous authority string values
For use in importing records where the xref for authority controlled fields is not provided. The source auth record needs to be determined given only a string value(s), if possible | diff --git a/dlx/marc/__init__.py b/dlx/marc/__init__.py
index 8935438..59e3e8b 100644
--- a/dlx/marc/__init__.py
+++ b/dlx/marc/__init__.py
@@ -1375,10 +1375,6 @@ class Marc(object):
#### de-serializations
- @classmethod
- def resolve_ambiguous(cls, subfields):
- pass
-
def from_mij(self, st... |
dag-hammarskjold-library__dlx-375 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/marc/query.py:WildcardRegex.__init__",
"dlx/marc/query.py:Query.from_string"
],
"edited_modules": [
"dlx/marc/query.py:WildcardRegex",
"dlx/marc/query.py:Query"
... | dag-hammarskjold-library/dlx | b7ffeca39f46756062e8018a2f9033b7deb97a2e | Logical field wildcard serarch bugfix
The search is not working properly matching strings at the beginning of the value, i.e. `author:german*`. Addresses https://github.com/dag-hammarskjold-library/dlx-rest/issues/1522 | diff --git a/dlx/marc/query.py b/dlx/marc/query.py
index 9d32951..ec80b96 100644
--- a/dlx/marc/query.py
+++ b/dlx/marc/query.py
@@ -15,7 +15,7 @@ class InvalidQueryString(Exception):
class WildcardRegex(Regex):
# for differentiating regex to run against text index vs actual value
def __init__(self, string=N... |
dag-hammarskjold-library__dlx-377 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/marc/query.py:Query.from_string"
],
"edited_modules": [
"dlx/marc/query.py:Query"
]
},
"file": "dlx/marc/query.py"
},
{
"changes": {
"added_entities":... | dag-hammarskjold-library/dlx | 6373cacd941dfeec2c59cf67ee6b4a3c9108e84b | Fix NOT wildcard search
No records should be returned that contain the value in the NOT term
Addresses https://github.com/dag-hammarskjold-library/dlx-rest/issues/1518 | diff --git a/dlx/marc/query.py b/dlx/marc/query.py
index ec80b96..e03499c 100644
--- a/dlx/marc/query.py
+++ b/dlx/marc/query.py
@@ -130,7 +130,13 @@ class Query():
# regex
if isinstance(value, Regex):
- matches = DB.handle[f'_index_{tag}'].find({'subfields.value':... |
dag-hammarskjold-library__dlx-382 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/marc/query.py:WildcardRegex.__init__",
"dlx/marc/query.py:Query.from_string"
],
"edited_modules": [
"dlx/marc/query.py:WildcardRegex",
"dlx/marc/query.py:Query"
... | dag-hammarskjold-library/dlx | 9d309b174ca75aa3e4d7054667bcb81ef4b28d75 | Wildcard search bugs
Regressions introduced in #377 | diff --git a/dlx/marc/query.py b/dlx/marc/query.py
index e03499c..f5b8d4c 100644
--- a/dlx/marc/query.py
+++ b/dlx/marc/query.py
@@ -15,7 +15,7 @@ class InvalidQueryString(Exception):
class WildcardRegex(Regex):
# for differentiating regex to run against text index vs actual value
def __init__(self, string=N... |
dag-hammarskjold-library__dlx-386 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/util.py:Table.serialize"
],
"edited_modules": [
"dlx/util.py:Table"
]
},
"file": "dlx/util.py"
}
] | dag-hammarskjold-library/dlx | 917d2361e5f6c11a0a4a70917fb13d07d4fec1e9 | Double quotes in CSV serialization not properly escaped
Bug here https://github.com/dag-hammarskjold-library/dlx/blob/917d2361e5f6c11a0a4a70917fb13d07d4fec1e9/dlx/util.py#L120 | diff --git a/dlx/util.py b/dlx/util.py
index 940bc29..37de978 100644
--- a/dlx/util.py
+++ b/dlx/util.py
@@ -114,10 +114,10 @@ class Table():
for field in self.header:
if value := record.get(field):
- if separator in value or value[0] == '"' or value[-1] == '"'... |
dag-hammarskjold-library__dlx-402 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/scripts/init_indexes.py:run"
],
"edited_modules": [
"dlx/scripts/init_indexes.py:run"
]
},
"file": "dlx/scripts/init_indexes.py"
},
{
"changes": {
"ad... | dag-hammarskjold-library/dlx | 5bdb082b8296696afc9c7398822bce8438f59b1e | Handle repeated subfields in CSV/TSV export
Currently, in cases of fields with repeated subfield codes, only one of the subfields makes it into the serialization. This is due to the tabular nature of the serialization.
- [ ] Concatenate the values of repeated subfields into one string joined by a separator i.e. ";" ... | diff --git a/dlx/scripts/init_indexes.py b/dlx/scripts/init_indexes.py
index 7d99357..ad89d0e 100644
--- a/dlx/scripts/init_indexes.py
+++ b/dlx/scripts/init_indexes.py
@@ -56,7 +56,7 @@ def run():
collation=Config.marc_index_default_collation
)
)
- indexes.append(col.creat... |
dag-hammarskjold-library__dlx-438 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/marc/__init__.py:Marc.commit",
"dlx/marc/__init__.py:Marc.delete",
"dlx/marc/__init__.py:Auth.heading_field",
"dlx/marc/__init__.py:Auth.list_attached",
"dlx/marc/__i... | dag-hammarskjold-library/dlx | fbcdb244752ece01002e7ba73074f88a2bbcb311 | Update bib record when tag in linked auth changes
Adresses https://github.com/dag-hammarskjold-library/dlx-rest/issues/1262 | diff --git a/dlx/marc/__init__.py b/dlx/marc/__init__.py
index dd8bde5..1a1d638 100644
--- a/dlx/marc/__init__.py
+++ b/dlx/marc/__init__.py
@@ -854,6 +854,7 @@ class Marc(object):
return ' '.join(all_text)
except Exception as err:
LOGGER.exception(err)
+ ra... |
dag-hammarskjold-library__dlx-447 | [
{
"changes": {
"added_entities": [
"dlx/marc/__init__.py:History.__init__",
"dlx/marc/__init__.py:History.from_query",
"dlx/marc/__init__.py:History.find_deleted",
"dlx/marc/__init__.py:History.deleted_by_date",
"dlx/marc/__init__.py:BibHistory.__init__",
"d... | dag-hammarskjold-library/dlx | aa23dfa94855472021b84ce3db49aed315309af1 | Search history using marc query documents
For finding deleted records and searching within revisions | diff --git a/dlx/marc/__init__.py b/dlx/marc/__init__.py
index 13505bb..58440ab 100644
--- a/dlx/marc/__init__.py
+++ b/dlx/marc/__init__.py
@@ -1,13 +1,13 @@
"""dlx.marc"""
-import time, re, json, threading, copy
+import time, re, json, threading, copy, typing
from collections import Counter
-from datetime import ... |
dag-hammarskjold-library__dlx-457 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"dlx/config.py:Config"
]
},
"file": "dlx/config.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities... | dag-hammarskjold-library/dlx | f63f1da04d5392875266b95923970783fef485bb | Add a "user" field to file data
Create a field in the file data to record a username of the file uploader | diff --git a/dlx/config.py b/dlx/config.py
index cb37c56..ba81b44 100644
--- a/dlx/config.py
+++ b/dlx/config.py
@@ -288,6 +288,9 @@ class Config():
# the collation used in the MDB CE indexes on the bibs and auths collections
marc_index_default_collation = {'locale': 'en', 'strength': 1, 'numericOrdering': Tr... |
dag-hammarskjold-library__dlx-466 | [
{
"changes": {
"added_entities": [
"dlx/marc/__init__.py:Datafield.delete_subfield"
],
"added_modules": null,
"edited_entities": [
"dlx/marc/__init__.py:Marc.get_subfields",
"dlx/marc/__init__.py:Datafield.get_values"
],
"edited_modules": [
"dl... | dag-hammarskjold-library/dlx | 8cc574be85dfae5ef58c6a1e06334ba0966a128b | Enable Marc.get_values to return all subfield values if no subfield is specified | diff --git a/dlx/marc/__init__.py b/dlx/marc/__init__.py
index ace6197..e6aaf89 100644
--- a/dlx/marc/__init__.py
+++ b/dlx/marc/__init__.py
@@ -594,7 +594,7 @@ class Marc(object):
def get_values(self, tag, *codes, **kwargs):
if tag[:2] == '00':
return [field.value for field in self.get_field... |
dag-hammarskjold-library__dlx-469 | [
{
"changes": {
"added_entities": [
"dlx/marc/__init__.py:Datafield.delete_subfield"
],
"added_modules": null,
"edited_entities": [
"dlx/marc/__init__.py:Marc.get_subfields",
"dlx/marc/__init__.py:Marc.commit",
"dlx/marc/__init__.py:Datafield.get_values"
... | dag-hammarskjold-library/dlx | 0e62948c78b653afae5e9c3f63fea84f2f70f6a1 | Bump version to v1.4.20
Clean up/prevent pseudo text index _id field null values and trailing spaces
The tailing spaces happen when a subfield in an auth heading field is deleted. null subfield values in the the collections no longer occur, but some are left over from previous functionality and can disrupt search. | diff --git a/dlx/marc/__init__.py b/dlx/marc/__init__.py
index ace6197..d90cf38 100644
--- a/dlx/marc/__init__.py
+++ b/dlx/marc/__init__.py
@@ -594,7 +594,7 @@ class Marc(object):
def get_values(self, tag, *codes, **kwargs):
if tag[:2] == '00':
return [field.value for field in self.get_field... |
dag-hammarskjold-library__dlx-508 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/marc/__init__.py:MarcSet.sort_table_header"
],
"edited_modules": [
"dlx/marc/__init__.py:MarcSet"
]
},
"file": "dlx/marc/__init__.py"
}
] | dag-hammarskjold-library/dlx | 0c44bf62c67b76c67ca2011a82c1f8ce8a9b035a | Table serialization fails when tag group has 10+ instances
Regex needs to be updated here
https://github.com/dag-hammarskjold-library/dlx/blob/0c44bf62c67b76c67ca2011a82c1f8ce8a9b035a/dlx/marc/__init__.py#L147 | diff --git a/README.md b/README.md
index c8a7ddd..457894c 100644
--- a/README.md
+++ b/README.md
@@ -32,15 +32,15 @@ query = Query.from_string("245__a:'Title' AND 245__b:'subtitle'")
# construct a more specific query using a `Condition`
query = Query(
- Condition('245', {'a': 'Title', 'b': 'subtitle'})
+ Conditi... |
dag-hammarskjold-library__dlx-512 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/marc/query.py:Query.from_string"
],
"edited_modules": [
"dlx/marc/query.py:Query"
]
},
"file": "dlx/marc/query.py"
}
] | dag-hammarskjold-library/dlx | 117817f3321b71ef5061a84aaf99877f514ecb1c | Regex in querystrings not properly matching beginning of strings
The following regex in querystrings does not return the proper results: `520:/corn/`. Whereas this search does: `520:/.*corn/`. These should both return the same results.
Adresses https://github.com/dag-hammarskjold-library/dlx-rest/issues/1643 | diff --git a/dlx/marc/query.py b/dlx/marc/query.py
index 47abc1b..b3cf408 100644
--- a/dlx/marc/query.py
+++ b/dlx/marc/query.py
@@ -109,9 +109,7 @@ class Query():
'''Returns: dlx.query.Condition'''
# fully qualified syntax
- match = re.match(r'(\d{3})(.)(.)([a-z0-9]):... |
dag-hammarskjold-library__dlx-522 | [
{
"changes": {
"added_entities": [
"dlx/marc/__init__.py:Marc.from_table",
"dlx/marc/__init__.py:Marc.from_csv"
],
"added_modules": null,
"edited_entities": [
"dlx/marc/__init__.py:MarcSet.sort_table_header"
],
"edited_modules": [
"dlx/marc/__i... | dag-hammarskjold-library/dlx | fa26fb035eeac985e6f68a170916c0a2e66e3615 | Implement Marc.from_table and Marc.from_csv
Currently de-seriazation of tabular data exists for MarcSet, but into individual Marc objects.
`.from_table` is for data in the form of abstracted tabular data. `.from_csv` should parse a CSV string into a table object, and then the table object can convert to a Marc object... | diff --git a/dlx/marc/__init__.py b/dlx/marc/__init__.py
index 56fa524..63659f9 100644
--- a/dlx/marc/__init__.py
+++ b/dlx/marc/__init__.py
@@ -1,6 +1,6 @@
"""dlx.marc"""
-import time, re, json, threading, copy, typing
+import time, re, json, csv, threading, copy, typing
from collections import Counter
from datet... |
dag-hammarskjold-library__dlx-523 | [
{
"changes": {
"added_entities": [
"dlx/marc/__init__.py:Marc.from_table",
"dlx/marc/__init__.py:Marc.from_csv"
],
"added_modules": null,
"edited_entities": [
"dlx/marc/__init__.py:MarcSet.sort_table_header",
"dlx/marc/__init__.py:Marc.get_value"
],
... | dag-hammarskjold-library/dlx | fa26fb035eeac985e6f68a170916c0a2e66e3615 | Marc.get_value() returns None if subfield is not in first instance of tag
For example a record with the below fields will return None on bib.get_value('069', 'b). It should return "Test2".
```
=069 \\$aTest1
=069 \\$bTest2
```
| diff --git a/dlx/marc/__init__.py b/dlx/marc/__init__.py
index 56fa524..968aa7d 100644
--- a/dlx/marc/__init__.py
+++ b/dlx/marc/__init__.py
@@ -1,6 +1,6 @@
"""dlx.marc"""
-import time, re, json, threading, copy, typing
+import time, re, json, csv, threading, copy, typing
from collections import Counter
from datet... |
dag-hammarskjold-library__dlx-524 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/marc/__init__.py:MarcSet.from_table",
"dlx/marc/__init__.py:MarcSet.from_xml_raw",
"dlx/marc/__init__.py:MarcSet.from_xml",
"dlx/marc/__init__.py:MarcSet.to_table",
"... | dag-hammarskjold-library/dlx | 437508ae10eb43ed8cb08c095c48aedf231a96b7 | Don't add 001 to seriazliations if there is no record ID
New and temporary records don't have record IDs. In serialization to MRK, a 001 field with a value of None is being added to these records. The field should not be added at all. | diff --git a/dlx/marc/__init__.py b/dlx/marc/__init__.py
index 968aa7d..7948e91 100644
--- a/dlx/marc/__init__.py
+++ b/dlx/marc/__init__.py
@@ -171,14 +171,12 @@ class MarcSet():
value = table.index[temp_id][field_name]
# parse the column header into tag, code and pl... |
dag-hammarskjold-library__dlx-534 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx/marc/__init__.py:MarcSet.from_table"
],
"edited_modules": [
"dlx/marc/__init__.py:MarcSet"
]
},
"file": "dlx/marc/__init__.py"
},
{
"changes": {
"adde... | dag-hammarskjold-library/dlx | aef49b3814de5d0bed103e5642fa3d8ab0ba96ed | Table column header parse bug
The regex here is not accounting for "0" in the header name. This causes headers with "0" in the field place to throw an error on parse. i.e. `10.650$a`
https://github.com/dag-hammarskjold-library/dlx/blob/9fbb8e0d976be285258b2c5470579e9da23697b5/dlx/marc/__init__.py#L174 | diff --git a/dlx/marc/__init__.py b/dlx/marc/__init__.py
index 67bbc89..b9c4741 100644
--- a/dlx/marc/__init__.py
+++ b/dlx/marc/__init__.py
@@ -171,7 +171,7 @@ class MarcSet():
value = table.index[temp_id][field_name]
# parse the column header into tag, code and plac... |
dag-hammarskjold-library__dlx-dl-123 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx_dl/scripts/export/__init__.py:_561"
],
"edited_modules": [
"dlx_dl/scripts/export/__init__.py:_561"
]
},
"file": "dlx_dl/scripts/export/__init__.py"
},
{
"c... | dag-hammarskjold-library/dlx-dl | f59613566132915e35ca8fe19ef7e41eb552a322 | Set a language for fft created using field 561
add the language to the fft filed when importing a files using a uri as an identifier. Just like here: https://github.com/dag-hammarskjold-library/dlx-dl/blob/6a6aa2cb377b676761cae6607ef59e2f0264b478/dlx_dl/scripts/export/__init__.py#L537C18-L537C46 | diff --git a/dlx_dl/scripts/export/__init__.py b/dlx_dl/scripts/export/__init__.py
index e5fdcdc..bd80fbe 100644
--- a/dlx_dl/scripts/export/__init__.py
+++ b/dlx_dl/scripts/export/__init__.py
@@ -392,6 +392,7 @@ def _561(bib):
latest = sorted(files, key=lambda x: x.timestamp, reverse=True)[0]
... |
dag-hammarskjold-library__dlx-dl-172 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dlx_dl/scripts/sync/__init__.py:run",
"dlx_dl/scripts/sync/__init__.py:get_records_by_date",
"dlx_dl/scripts/sync/__init__.py:compare_and_update",
"dlx_dl/scripts/sync/__init__.p... | dag-hammarskjold-library/dlx-dl | 64a31dbbcde6faba84f0333a78ff15f2d41483e1 | Bump version to v1.2.11 | diff --git a/dlx_dl/scripts/sync/__init__.py b/dlx_dl/scripts/sync/__init__.py
index b255fd5..17a5d92 100644
--- a/dlx_dl/scripts/sync/__init__.py
+++ b/dlx_dl/scripts/sync/__init__.py
@@ -93,7 +93,13 @@ def get_args(**kwargs):
return parser.parse_args()
-def run(**kwargs):
+def run(**kwargs) -> int:
+ ... |
dalibo__pgtoolkit-120 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pgtoolkit/service.py:Service.__init__"
],
"edited_modules": [
"pgtoolkit/service.py:Service"
]
},
"file": "pgtoolkit/service.py"
}
] | dalibo/pgtoolkit | a431f15e0d084437bb4f0e17e53cb95f94b42dc4 | Service produces syntax error in service file
### Service produces syntax error in service file
```
pg_pass = parse_pgpass(HOMEPGPASS)
for line in pg_pass:
_service = Service(
name=f"{line.database}-{line.username}",
parameters={
"dbname": line.database,
"host": lin... | diff --git a/pgtoolkit/service.py b/pgtoolkit/service.py
index 0b1dbd3..1cd97ef 100644
--- a/pgtoolkit/service.py
+++ b/pgtoolkit/service.py
@@ -120,10 +120,12 @@ class Service(dict[str, Parameter]):
'mydb'
>>> myservice.user = 'myuser'
>>> list(sorted(myservice.items()))
- [('dbname', 'mydb'), ('host... |
dalibo__pgtoolkit-156 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pgtoolkit/conf.py:parse_value"
],
"edited_modules": [
"pgtoolkit/conf.py:parse_value"
]
},
"file": "pgtoolkit/conf.py"
}
] | dalibo/pgtoolkit | 5c45afe24123a1813a62b8abe2759fca83fdc0ae | Boolean values should be accepted even if upper-cased
Only the lower-cased variant are considered for boolean conversion:
https://github.com/dalibo/pgtoolkit/blob/5c45afe24123a1813a62b8abe2759fca83fdc0ae/pgtoolkit/conf.py#L260
While the PG doc states it should be case insensitive:
https://www.postgresql.org... | diff --git a/pgtoolkit/conf.py b/pgtoolkit/conf.py
index c72ad7d..76389f4 100644
--- a/pgtoolkit/conf.py
+++ b/pgtoolkit/conf.py
@@ -257,10 +257,10 @@ def parse_value(raw: str) -> Value:
kwargs = {arg: int(m.group("number"))}
return timedelta(**kwargs)
- if raw in ("true", "yes", "on"):
+ if r... |
dalito__ucumvert-25 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/ucumvert/ucum_pint.py:UcumToPintTransformer.simple_unit"
],
"edited_modules": [
"src/ucumvert/ucum_pint.py:UcumToPintTransformer"
]
},
"file": "src/ucumvert/ucum_pi... | dalito/ucumvert | 67f4b5b29003ec362d6094f022b4776b9d3b857a | Bad conversion : milli international unit per liter
Hi, I think there is a problem when converting a IU with a prefix to a Pint unit:
Input : `m[IU]/L` (from the UCUM examples list, #403)
- Expected output : `milliinternational_unit / liter`
- Actual output : `meter * international_unit / liter`
Note that `k[IU... | diff --git a/src/ucumvert/ucum_pint.py b/src/ucumvert/ucum_pint.py
index 7d1efc2..b6d31ef 100644
--- a/src/ucumvert/ucum_pint.py
+++ b/src/ucumvert/ucum_pint.py
@@ -152,7 +152,12 @@ class UcumToPintTransformer(Transformer):
def simple_unit(self, args):
# print("DBGsu>", repr(args), len(args))
if ... |
damnever__fmt-16 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"fmt/fmt.py:Expression.__init__",
"fmt/fmt.py:Parser._parse_node_str"
],
"edited_modules": [
"fmt/fmt.py:Expression",
"fmt/fmt.py:Parser"
]
},
"file": "f... | damnever/fmt | 12cc50185a8ff90db1ac17f862568a4780fee774 | datetime format
- `f('{datetime(1994, 11, 6, 0, 0, 0):%Y-%m-%d %H:%M:%S}')`
- `f('{(lambda: datetime(1994, 11, 6, 0, 0, 0))():%Y-%m-%d %H:%M:%S}')` | diff --git a/fmt/fmt.py b/fmt/fmt.py
index 019eab3..8344646 100644
--- a/fmt/fmt.py
+++ b/fmt/fmt.py
@@ -104,7 +104,7 @@ class Expression(Node):
def __init__(self, expr, fmt, name='name'):
self._expr = expr
self._name = name
- self._fmt = fmt.replace(expr, name).replace(' ', '')
+ s... |
dandi__dandi-cli-1415 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/dandiapi.py:BaseRemoteAsset.get_content_url",
"dandi/dandiapi.py:RemoteZarrEntry.get_download_file_iter"
],
"edited_modules": [
"dandi/dandiapi.py:BaseRemoteAsset",
... | dandi/dandi-cli | 2cafb50d896ee8eeb27641b19cfd407c395202e6 | Use a dedicated URL-handling library
There are various places in the code that would benefit from the use of a modern URL-handling library, such as [furl](https://github.com/gruns/furl), [purl](https://github.com/codeinthehole/purl), or [yarl](https://github.com/aio-libs/yarl). These include:
* [x] [`is_same_url()`... | diff --git a/dandi/dandiapi.py b/dandi/dandiapi.py
index 95960825..a7169c3a 100644
--- a/dandi/dandiapi.py
+++ b/dandi/dandiapi.py
@@ -14,13 +14,13 @@ import re
from time import sleep, time
from types import TracebackType
from typing import TYPE_CHECKING, Any, Dict, List, Optional
-from urllib.parse import quote_plu... |
dandi__dandi-cli-1467 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/cli/cmd_download.py:download"
],
"edited_modules": [
"dandi/cli/cmd_download.py:download"
]
},
"file": "dandi/cli/cmd_download.py"
},
{
"changes": {
... | dandi/dandi-cli | c0b64d594fe5f251cff4fb3caf14872c4a6d28ad | download: add --keep-leading-path|-k or some mode for `--download`
Inspired by
- https://github.com/dandi/dandi-archive/issues/1981
ATM whenever we download an asset, we download file into current directory (besides if path is a glob as I showed in https://github.com/dandi/dandi-archive/issues/1981). That makes it... | diff --git a/dandi/cli/cmd_download.py b/dandi/cli/cmd_download.py
index 7a9ebeff..32c1ff66 100644
--- a/dandi/cli/cmd_download.py
+++ b/dandi/cli/cmd_download.py
@@ -100,6 +100,15 @@ Download files or entire folders from DANDI.
default="all",
show_default=True,
)
+@click.option(
+ "--preserve-tree",
+ ... |
dandi__dandi-cli-1482 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/metadata/util.py:extract_species"
],
"edited_modules": [
"dandi/metadata/util.py:extract_species"
]
},
"file": "dandi/metadata/util.py"
}
] | dandi/dandi-cli | 5faa18a46ffb8dfc1217eb8664200acdd3cb0631 | failed to extract metadata: UnboundLocalError: local variable 'value' referenced before assignment
When trying to upload a dataset, I get a number of errors regarding a local variable "value" and a failure to extract metadata.
Traceback below
```
Traceback (most recent call last):
File "/home/nrsc/.local/lib... | diff --git a/dandi/metadata/util.py b/dandi/metadata/util.py
index d3f8f95b..23f82b24 100644
--- a/dandi/metadata/util.py
+++ b/dandi/metadata/util.py
@@ -474,7 +474,7 @@ def extract_species(metadata: dict) -> models.SpeciesType | None:
break
if value_id is None:
raise ValueEr... |
dandi__dandi-cli-209 | [
{
"changes": {
"added_entities": [
"dandi/cli/cmd_download.py:ChoiceList.__init__",
"dandi/cli/cmd_download.py:ChoiceList.convert",
"dandi/cli/cmd_download.py:ChoiceList.get_metavar"
],
"added_modules": [
"dandi/cli/cmd_download.py:ChoiceList"
],
"ed... | dandi/dandi-cli | 59f8d905f8ec603947092bc0475b63edb77c8189 | download: add an option to not download the entire dandiset
the UX problem is that we do allow to download an arbitrary directory, files, etc.
We need an option for a download at dandiset level to not download individual assets, and just get the `dandiset.yaml`.
@satra thinks about `--no-assets` option.
Could ... | diff --git a/dandi/cli/cmd_download.py b/dandi/cli/cmd_download.py
index 32b1b481..e44e1c7d 100644
--- a/dandi/cli/cmd_download.py
+++ b/dandi/cli/cmd_download.py
@@ -4,6 +4,29 @@ import click
from .base import devel_option, map_to_click_exceptions
+class ChoiceList(click.ParamType):
+ name = "choice-list"
+
+ ... |
dandi__dandi-cli-330 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "dandi/cli/cmd_download.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_m... | dandi/dandi-cli | 37498360bb5190963eae88bbff126b035a283ea0 | Interface new implementation (API server) in dandi-cli top-level interfaces
A decision was made in https://github.com/dandi/dandi-cli/pull/283 to aim to get `master` in a shape to support interaction with both current girder-based deployed dandiarchive **and** WiP https://github.com/dandi/dandi-api implementations with... | diff --git a/DEVELOPMENT.md b/DEVELOPMENT.md
index 51f7fdf6..c9312dae 100644
--- a/DEVELOPMENT.md
+++ b/DEVELOPMENT.md
@@ -42,7 +42,7 @@ development command line options.
All those options would otherwise be hidden from the user visible (`--help`)
interface, unless this env variable is set to non-empty value
--... |
dandi__dandi-cli-377 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/dandiarchive.py:navigate_url",
"dandi/dandiarchive.py:_dandi_url_parser.parse"
],
"edited_modules": [
"dandi/dandiarchive.py:navigate_url",
"dandi/dandiarchive.... | dandi/dandi-cli | 351bd29572d274698b52547f81ca5c1de2a42467 | dandi-api: improve download functionality
TODOs
- [x] add support for downloading a specific folder (that was disabled)
- [x] replace hardcoded to consider "draft" to be the "latest version" . We should remove that and allow for version to be left unspecified, and then DandiAPIClient code handle it properly (get the ... | diff --git a/dandi/dandiarchive.py b/dandi/dandiarchive.py
index 854a1547..8cb0c4eb 100644
--- a/dandi/dandiarchive.py
+++ b/dandi/dandiarchive.py
@@ -46,25 +46,34 @@ def navigate_url(url):
args = asset_id, asset_type
elif server_type == "api":
client = DandiAPIClient(server_url)
+ if asse... |
dandi__dandi-cli-535 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/dandiarchive.py:navigate_url",
"dandi/dandiarchive.py:_dandi_url_parser.parse"
],
"edited_modules": [
"dandi/dandiarchive.py:navigate_url",
"dandi/dandiarchive.... | dandi/dandi-cli | cebdf8614f0dac72d4cc04f29ad0e547eb2ab765 | ls: provide ability to list individual asset from a download url
ATM:
```
$> dandi ls -f json_pp https://api.dandiarchive.org/api/dandisets/000003/versions/draft/assets/0a748f90-d497-4a9c-822e-9c63811db412/download/
2021-04-06 12:20:16,926 [ INFO] Logs saved in /home/yoh/.cache/dandi-cli/log/20210406162015Z-19639... | diff --git a/dandi/dandiarchive.py b/dandi/dandiarchive.py
index 3729a092..81c0f6b8 100644
--- a/dandi/dandiarchive.py
+++ b/dandi/dandiarchive.py
@@ -51,7 +51,7 @@ def navigate_url(url):
asset_id["version"] = r["most_recent_version"]["version"]
args = (asset_id["dandiset_id"], asset_id["version"]... |
dandi__dandi-cli-555 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/dandiarchive.py:_dandi_url_parser.parse"
],
"edited_modules": [
"dandi/dandiarchive.py:_dandi_url_parser"
]
},
"file": "dandi/dandiarchive.py"
}
] | dandi/dandi-cli | b8bb48d890f6af6ad769637f42d9fba41478bfe4 | downloading multiple assets using paths does not work
two issues here:
- [ ] download for path does not work
- [ ] error logs should perhaps give instructions on how to expand error details. (for example use `-l DEBUG` and then copy and paste the entire log information)
```
$ dandi download 'https://api.dandiarch... | diff --git a/dandi/dandiarchive.py b/dandi/dandiarchive.py
index 5f56eacc..55e1f7d8 100644
--- a/dandi/dandiarchive.py
+++ b/dandi/dandiarchive.py
@@ -198,12 +198,22 @@ class _dandi_url_parser:
re.compile(
rf"{server_grp}(?P<asset_type>dandiset)s/{dandiset_id_grp}"
r"/vers... |
dandi__dandi-cli-565 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/dandiarchive.py:_dandi_url_parser.parse"
],
"edited_modules": [
"dandi/dandiarchive.py:_dandi_url_parser"
]
},
"file": "dandi/dandiarchive.py"
},
{
"chang... | dandi/dandi-cli | 6a5f285c74d8b398f6860b43a270ac1382a65709 | automate switching to `-i dandi-api` via `dandiarchive.org/server-info` information
ATM that one reports
```json
{
"version": "1.0.0",
"cli-minimal-version": "0.6.0",
"cli-bad-versions": [],
"services": {
"girder": {
"url": "https://girder.dandiarchive.org"
},
"webui": {
"url": "https://gui.dandiarchive.org"... | diff --git a/dandi/dandiarchive.py b/dandi/dandiarchive.py
index 8a097af6..f50280df 100644
--- a/dandi/dandiarchive.py
+++ b/dandi/dandiarchive.py
@@ -139,6 +139,7 @@ class _dandi_url_parser:
# - server_type:
# - 'girder' - underlying requests should go to girder server
# - 'api' - the "n... |
dandi__dandi-cli-582 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/cli/base.py:devel_debug_option"
],
"edited_modules": [
"dandi/cli/base.py:devel_debug_option"
]
},
"file": "dandi/cli/base.py"
},
{
"changes": {
"ad... | dandi/dandi-cli | e564fdb3a964f5170f67e48b0ff9034794f4ca0d | codespell the code base
works like charm:
```shell
$> codespell dandi
dandi/_version.py:280: unparseable ==> unparsable
dandi/download.py:100: Activites ==> Activities
dandi/models.py:438: alpha-numeric ==> alphanumeric
dandi/utils.py:112: tollerance ==> tolerance
dandi/utils.py:121: tollerance ==> tolerance
da... | diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 5cbea257..4e3fa019 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -18,3 +18,8 @@ repos:
hooks:
- id: isort
exclude: ^(dandi/_version\.py|dandi/due\.py|versioneer\.py)$
+- repo: https://github.com/codespell... |
dandi__dandi-cli-63 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/utils.py:find_files"
],
"edited_modules": [
"dandi/utils.py:find_files"
]
},
"file": "dandi/utils.py"
}
] | dandi/dandi-cli | 21b8505d8aedbdb2f764a727ca7a98e5c36da31e | hidden resource fork files break organize command on mac with external drive
Nac users with an external drive are likely to have hidden "resource fork" files that have the prefix "`._`". These files are invisible and can normally be safely ignored, but they break the organize command. These files are difficult for mac ... | diff --git a/dandi/utils.py b/dandi/utils.py
index a437d3ad..421dafb2 100644
--- a/dandi/utils.py
+++ b/dandi/utils.py
@@ -224,6 +224,7 @@ def find_files(
regex,
paths=os.curdir,
exclude=None,
+ exclude_dotfiles=True,
exclude_vcs=True,
exclude_datalad=False,
dirs=False,
@@ -268,6 +269,7... |
dandi__dandi-cli-96 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandi/validate.py:validate_dandi_nwb"
],
"edited_modules": [
"dandi/validate.py:validate_dandi_nwb"
]
},
"file": "dandi/validate.py"
}
] | dandi/dandi-cli | 2f45a2782cc0a6ba525c4c52d13f9bd6b3f91dc5 | validate: crashes if file is not read ok
```shell
(git-annex)lena:~/proj/dandi/nwb-datasets[master]bendichter/Gao2018
$> dandi validate *nwb
anm00314746_2015-10-20 09:36:04 (1).nwb: ok
anm00314746_2015-10-21 11:25:41 (1).nwb: ok
anm00314746_2015-10-22 15:17:38 (1).nwb: ok
anm00314756_2015-10-20 19:42:1... | diff --git a/dandi/validate.py b/dandi/validate.py
index a614bb7a..ff038262 100644
--- a/dandi/validate.py
+++ b/dandi/validate.py
@@ -51,7 +51,10 @@ def validate_dandi_nwb(filepath):
"""Provide validation of .nwb file regarding requirements we impose
"""
# make sure that we have some basic metadata fiel... |
dandi__dandi-schema-236 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dandischema/models.py:Contributor.ensure_contact_person_has_email"
],
"edited_modules": [
"dandischema/models.py:Contributor"
]
},
"file": "dandischema/models.py"
},
... | dandi/dandi-schema | dc15401c895f12186491247533587313a88c010f | Add a top-level `$schema` field to the generated JSON Schemata
The JSON Schema spec is frequently updated (sometimes introducing backwards incompatibilities), and so we should [declare the JSON Schema version ("dialect") used by our schemata via a top-level `$schema` field](https://github.com/dandi/dandi-schema/issues/... | diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index c79e46e..8fbbe97 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -2,14 +2,14 @@
# See https://pre-commit.com/hooks.html for more hooks
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
- rev: v4.6.0
+ rev: ... |
danielfernau__unifi-protect-video-downloader-380 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"protect_archiver/cli/download.py:download"
],
"edited_modules": [
"protect_archiver/cli/download.py:download"
]
},
"file": "protect_archiver/cli/download.py"
},
{
... | danielfernau/unifi-protect-video-downloader | 69006566fe747aef597472e7b67c74e27777554e | Ignores one of the times
passing in --start="2020-08-29 18:24:55-0400" --end="2020-08-29 18:26:55-0400" and instead I get video from 2020-08-29 18:24:55-0400 to 2020-08-29 19:00:00-0400
but it seems to randomly (I cannot figure out the pattern...) where it will peg the start time to the hour vs the time I passed in... | diff --git a/poetry.lock b/poetry.lock
index 1ff9710..f04e2ad 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
[[package]]
... |
danielgtaylor__python-betterproto-495 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"src/betterproto/__init__.py:Message.to_pydict"
],
"edited_modules": [
"src/betterproto/__init__.py:Message"
]
},
"file": "src/betterproto/__init__.py"
}
] | danielgtaylor/python-betterproto | aad7d2ad769fa26a90cc3572320e17093d3b7d48 | TypeError in to_pydict with optional fields
See https://github.com/danielgtaylor/python-betterproto/issues/475#issuecomment-1512296041
<details>
<summary>Outdated</summary>
I am using betterproto to load a ton of messages at once from a binary file, however this operation is very slow so I wanted to cache/parse ... | diff --git a/src/betterproto/__init__.py b/src/betterproto/__init__.py
index 82a5b14..40be27f 100644
--- a/src/betterproto/__init__.py
+++ b/src/betterproto/__init__.py
@@ -1373,6 +1373,9 @@ class Message(ABC):
value = [i.to_pydict(casing, include_default_values) for i in value]
... |
danielgtaylor__python-betterproto-551 | [
{
"changes": {
"added_entities": [
"src/betterproto/lib/google/protobuf/__init__.py:Struct.from_dict",
"src/betterproto/lib/google/protobuf/__init__.py:Struct.to_dict"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"src/betterproto/li... | danielgtaylor/python-betterproto | b8a091ae7055dd949d193695a06c9536ad51eea8 | Struct, Value well know type not supported
https://developers.google.com/protocol-buffers/docs/reference/csharp/class/google/protobuf/well-known-types/struct
These should map to `dict[str, any]` and `any` | diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index e59aac8..8f8b545 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -16,12 +16,12 @@ jobs:
fail-fast: false
matrix:
os: [Ubuntu, MacOS, Windows]
- python-version: ['3.7', '3.8', '3.9', '3.10', '3.11... |
danielgtaylor__python-betterproto-594 | [
{
"changes": {
"added_entities": null,
"added_modules": [
"src/betterproto/__init__.py:_types_UnionType"
],
"edited_entities": [
"src/betterproto/__init__.py:Message._get_field_default_gen"
],
"edited_modules": [
"src/betterproto/__init__.py:Message"
... | danielgtaylor/python-betterproto | 5fdd0bb24fc43091599a2284a948fc06e1a55edb | pydantic option broken
### Summary
Instantiating messages generated with pydantic option throws exceptions.
### Protobuf schema
```proto
syntax = "proto3";
package prototest.v1;
message One {
uint32 message = 1;
}
message Two {
string message = 1;
}
message Message {
oneof message {
... | diff --git a/src/betterproto/__init__.py b/src/betterproto/__init__.py
index 050f414..cbafc83 100644
--- a/src/betterproto/__init__.py
+++ b/src/betterproto/__init__.py
@@ -62,6 +62,13 @@ if TYPE_CHECKING:
SupportsWrite,
)
+if sys.version_info >= (3, 10):
+ from types import UnionType as _types_Union... |
danjac__pyramid_storage-54 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"pyramid_storage/gcloud.py:GoogleCloudStorage.save_file"
],
"edited_modules": [
"pyramid_storage/gcloud.py:GoogleCloudStorage"
]
},
"file": "pyramid_storage/gcloud.py"
... | danjac/pyramid_storage | ad4946eb84d90add50835c34727a01d251ea3a36 | Switch to boto3 for Amazon S3 backend
https://github.com/boto/boto3
See https://github.com/danjac/pyramid_storage/blob/a3fe9f6c00b1032e198b53e69eef0a28f06ec5c6/pyramid_storage/s3.py#L62-L65
| diff --git a/docs/index.rst b/docs/index.rst
index 7ae5c8a..4cc981f 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -84,7 +84,7 @@ Setting Default Description
**aws.access_key** **required** AWS access key
**aws.secret_key** **required** AWS secret key
**... |
danvk__webdiff-180 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"webdiff/unified_diff.py:read_codes",
"webdiff/unified_diff.py:add_replaces",
"webdiff/unified_diff.py:diff_to_codes"
],
"edited_modules": [
"webdiff/unified_diff.py:C... | danvk/webdiff | e8a72fbaff7908eea0dd25a6275bf42aa08e8b4e | Show diffhunk headers
`git diff` and GitHub's UI show headers on diffhunks to give you some context, typically the name of the containing function:
```
@@ -218,7 +208,7 @@ class CustomHTTPRequestHandler(BaseHTTPRequestHandler):
```
<img width="1479" alt="image" src="https://github.com/danvk/webdiff/assets/98301... | diff --git a/ts/CodeDiff.tsx b/ts/CodeDiff.tsx
index af43419..ddb15aa 100644
--- a/ts/CodeDiff.tsx
+++ b/ts/CodeDiff.tsx
@@ -104,6 +104,7 @@ export function CodeDiff(props: {filePair: FilePair, diffOptions: Partial<DiffOp
}
})().catch(e => {
alert('Unable to get diff!');
+ console.error(e);
... |
dapr__python-sdk-272 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dapr/actor/runtime/_reminder_data.py:ActorReminderData.as_dict"
],
"edited_modules": [
"dapr/actor/runtime/_reminder_data.py:ActorReminderData"
]
},
"file": "dapr/actor... | dapr/python-sdk | 04d838965344608f6021621995c50a1a5548f5a3 | ReminderData does not honours period value
## Expected Behavior
When registering an Actor's reminder it should honour the `period` argument's value, allowing us to schedule reminders.
## Actual Behavior
when receive_reminder() is called, `period` argument contains the `due_time` 'svalue. Also, reminder is ca... | diff --git a/dapr/actor/runtime/_reminder_data.py b/dapr/actor/runtime/_reminder_data.py
index 2fcddfd..62cd202 100644
--- a/dapr/actor/runtime/_reminder_data.py
+++ b/dapr/actor/runtime/_reminder_data.py
@@ -74,7 +74,7 @@ class ActorReminderData:
return {
'reminderName': self._reminder_name,
... |
dapr__python-sdk-293 | [
{
"changes": {
"added_entities": [
"dapr/clients/grpc/_response.py:InvokeMethodResponse.json",
"dapr/clients/grpc/_response.py:BindingResponse.json",
"dapr/clients/grpc/_response.py:StateResponse.json",
"dapr/clients/grpc/_response.py:BulkStateItem.json"
],
"add... | dapr/python-sdk | 33e7d48ffbed9b175ff095d18247f328e990d4ca | Support default json serializer in DaprClient and add .json helper
## Describe the proposal
In [the convenient layer spec](https://github.com/dapr/python-sdk/issues/67), DaprClient doesn't have the default json serializer, but let users to handle JSON serialization. Like the other python pkgs, such as flask, request... | diff --git a/dapr/clients/grpc/_response.py b/dapr/clients/grpc/_response.py
index 383a67a..d037a3f 100644
--- a/dapr/clients/grpc/_response.py
+++ b/dapr/clients/grpc/_response.py
@@ -20,6 +20,8 @@ from dapr.clients.grpc._helpers import (
unpack,
)
+import json
+
class DaprResponse:
"""A base class for... |
dapr__python-sdk-400 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dapr/clients/__init__.py:DaprClient.invoke_method"
],
"edited_modules": [
"dapr/clients/__init__.py:DaprClient"
]
},
"file": "dapr/clients/__init__.py"
},
{
"ch... | dapr/python-sdk | d783ed2538bac6b464a5f1678b202e9edf69d7c8 | invoke_binding call shouldn't require the data parameter | diff --git a/dapr/clients/__init__.py b/dapr/clients/__init__.py
index fb4d223..c871e5f 100644
--- a/dapr/clients/__init__.py
+++ b/dapr/clients/__init__.py
@@ -89,7 +89,7 @@ class DaprClient(DaprGrpcClient):
self,
app_id: str,
method_name: str,
- data: Union[bytes, str... |
dapr__python-sdk-402 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dapr/clients/http/dapr_invocation_http_client.py:DaprInvocationHttpClient.invoke_method_async"
],
"edited_modules": [
"dapr/clients/http/dapr_invocation_http_client.py:DaprInvocation... | dapr/python-sdk | c57b872bcd263c5a856b8b0caf3e0075cde4fd92 | DaprInvocationHttpClient should correctly populate headers in InvokeMethodResponse
## Expected Behavior
DaprInvocationHttpClient should correctly populate headers in InvokeMethodResponse
## Actual Behavior
DaprInvocationHttpClient does not correctly populate headers in InvokeMethodResponse
## Steps to R... | diff --git a/dapr/clients/http/dapr_invocation_http_client.py b/dapr/clients/http/dapr_invocation_http_client.py
index 97b6020..623df62 100644
--- a/dapr/clients/http/dapr_invocation_http_client.py
+++ b/dapr/clients/http/dapr_invocation_http_client.py
@@ -97,8 +97,12 @@ class DaprInvocationHttpClient:
... |
dapr__python-sdk-692 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dapr/clients/health.py:DaprHealth.wait_until_ready"
],
"edited_modules": [
"dapr/clients/health.py:DaprHealth"
]
},
"file": "dapr/clients/health.py"
}
] | dapr/python-sdk | 9021b952c686dec424cda07023e8df4e5feb978b | [BUG] DAPR_HEALTH_TIMEOUT as environment variable is not converted to numerical value
## Expected Behavior
When passing `DAPR_HEALTH_TIMEOUT` as environment variable it should be converted to a numerical value.
## Actual Behavior
docker container with env `DAPR_HEALTH_TIMEOUT=30`
```timestamp="2024-03-22... | diff --git a/dapr/clients/health.py b/dapr/clients/health.py
index 120b559..e3daec7 100644
--- a/dapr/clients/health.py
+++ b/dapr/clients/health.py
@@ -28,7 +28,7 @@ class DaprHealth:
headers = {USER_AGENT_HEADER: DAPR_USER_AGENT}
if settings.DAPR_API_TOKEN is not None:
headers[DAPR_API_... |
darosior__python-bip32-10 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"bip32/bip32.py:BIP32.get_extended_pubkey_from_path"
],
"edited_modules": [
"bip32/bip32.py:BIP32"
]
},
"file": "bip32/bip32.py"
}
] | darosior/python-bip32 | b3f6696229bada1089f06ec095b3d650276c0d7b | Can't derive master xpubs
```python
if _hardened_index_in_path(path):
for index in path:
if index & HARDENED_INDEX:
key, chaincode = \
_derive_hardened_private_child(key, chaincode, index)
else:
ke... | diff --git a/bip32/bip32.py b/bip32/bip32.py
index e66103d..b48af98 100644
--- a/bip32/bip32.py
+++ b/bip32/bip32.py
@@ -84,6 +84,7 @@ class BIP32:
if isinstance(path, str):
path = _deriv_path_str_to_list(path)
chaincode, key = self.master_chaincode, self.master_privkey
+ pubkey = ... |
dask__dask-10159 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/config.py:update",
"dask/config.py:update_defaults"
],
"edited_modules": [
"dask/config.py:update",
"dask/config.py:update_defaults"
]
},
"file": "... | dask/dask | e3aa15e54600659ddc1b7139143a70ef1c1c05c6 | `config.update_defaults` doesn't replace previous default values
The `update_defaults` function doesn't quite do what the name implies, because it doesn't actually override values that were previously set as defaults:
```python
In [1]: import dask.config
In [2]: len(dask.config.defaults)
Out[2]: 1
In [3]: dask... | diff --git a/dask/config.py b/dask/config.py
index c3a1836a7..6aee66f17 100644
--- a/dask/config.py
+++ b/dask/config.py
@@ -79,7 +79,12 @@ def canonical_name(k: str, config: dict) -> str:
return k
-def update(old: dict, new: Mapping, priority: Literal["old", "new"] = "new") -> dict:
+def update(
+ old: dic... |
dask__dask-1024 | [
{
"changes": {
"added_entities": [
"dask/array/reductions.py:_tree_reduce",
"dask/array/reductions.py:make_arg_reduction"
],
"added_modules": [
"dask/array/reductions.py:_tree_reduce",
"dask/array/reductions.py:make_arg_reduction"
],
"edited_entities... | dask/dask | 09bda79a79acc261f31a446425efc5dd2fb42b9a | dask.array.argmin fails on 3D input
```
In [29]: da.from_array(np.random.randn(2, 3, 4), chunks=(2, 3, 4)).argmin(axis=0).compute()
---------------------------------------------------------------------------
IndexError Traceback (most recent call last)
<ipython-input-29-b25ac117010d> ... | diff --git a/dask/array/reductions.py b/dask/array/reductions.py
index 3f05e1628..a29003285 100644
--- a/dask/array/reductions.py
+++ b/dask/array/reductions.py
@@ -1,12 +1,12 @@
from __future__ import absolute_import, division, print_function
from functools import partial, wraps
-from itertools import product
+fro... |
dask__dask-1028 | [
{
"changes": {
"added_entities": [
"dask/array/reductions.py:nanarg_agg",
"dask/array/reductions.py:_nanargmin",
"dask/array/reductions.py:_nanargmax"
],
"added_modules": [
"dask/array/reductions.py:nanarg_agg",
"dask/array/reductions.py:_nanargmin",
... | dask/dask | 6dc9229362f2d3b1dfa466a8a63831c3c832b4be | da.nanargmax fails when it encounters an all-NaN slice in a chunk
Follow up on #776
```
In [1]: import numpy as np
In [2]: import dask.array as da
In [3]: x = np.array([[1.0, np.nan], [np.nan, 2.0]])
In [4]: da.nanmax(da.from_array(x, chunks=1), axis=1).compute()
/Users/shoyer/miniconda/envs/dask-dev/lib/... | diff --git a/dask/array/reductions.py b/dask/array/reductions.py
index a29003285..c0b12cd08 100644
--- a/dask/array/reductions.py
+++ b/dask/array/reductions.py
@@ -466,6 +466,13 @@ def arg_agg(func, argfunc, data, axis=None, **kwargs):
return _arg_combine(data, axis, argfunc, keepdims=False)[0]
+def nanarg_ag... |
dask__dask-10380 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "dask/array/stats.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/cli.py:_reg... | dask/dask | 85c99bc20abc382774cfb6e5bf5f2db76ac09378 | CLI registration can fail with bad submodule
If a package registers an entry point for the CLI but the entrypoint is broken or not importable the CLI cannot work at all.
This is a little hard to create an MRE for but I seeing this with `dask-ctl` when updating `textual` to a more recent version. Ther error comes fro... | diff --git a/dask/array/stats.py b/dask/array/stats.py
index e5ec8c320..0b0480bae 100644
--- a/dask/array/stats.py
+++ b/dask/array/stats.py
@@ -144,8 +144,48 @@ def ttest_rel(a, b, axis=0, nan_policy="propagate"):
return delayed(Ttest_relResult, nout=2)(t, prob)
-@derived_from(scipy.stats)
def chisquare(f_ob... |
dask__dask-10509 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/config.py:update"
],
"edited_modules": [
"dask/config.py:update"
]
},
"file": "dask/config.py"
}
] | dask/dask | d86545992a7b81fc92a8bd63e0f02c6d95419585 | Breaking change of dask config schema
https://github.com/dask/dask/pull/10456 introduced a breaking change to the dask config schema by changing `admin.traceback.shorten` from type dict/object to a list/array.
Depending on how configs are managed this can cause critical startup failures of servers.
One way I foun... | diff --git a/dask/config.py b/dask/config.py
index 1ba48faee..e1ea81e83 100644
--- a/dask/config.py
+++ b/dask/config.py
@@ -126,7 +126,7 @@ def update(
k = canonical_name(k, old)
if isinstance(v, Mapping):
- if k not in old or old[k] is None:
+ if k not in old or old[k] is Non... |
dask__dask-10695 | [
{
"changes": {
"added_entities": [
"dask/dataframe/__init__.py:_dask_expr_enabled",
"dask/dataframe/__init__.py:raise_not_implemented_error"
],
"added_modules": [
"dask/dataframe/__init__.py:_dask_expr_enabled",
"dask/dataframe/__init__.py:raise_not_implemented_... | dask/dask | 51f90b62bee920bdd84e9c210fcddbea6c7c43a0 | Add a `.__wrapped__` (or similar) attribute for `@dask.delayed`-decorated functions
It would be nice if the `@dask.delayed`-decorated function had an attribute that could be called to return the undecorated function. Drawing inspiration from the widely used [`functools.wraps()`](https://docs.python.org/3/library/functo... | diff --git a/.github/workflows/label-prs.yml b/.github/workflows/label-prs.yml
index b27f957d9..834bbcd32 100644
--- a/.github/workflows/label-prs.yml
+++ b/.github/workflows/label-prs.yml
@@ -6,7 +6,7 @@ jobs:
label:
runs-on: ubuntu-latest
steps:
- - uses: actions/labeler@v4.3.0
+ - uses: actions/la... |
dask__dask-10705 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/dataframe/multi.py:_split_partition"
],
"edited_modules": [
"dask/dataframe/multi.py:_split_partition"
]
},
"file": "dask/dataframe/multi.py"
},
{
"changes... | dask/dask | dc59297482a1402ebd4f15bd8cfbdc5e80039468 | Unstable grouping result when calling groupby apply on merged dask dataframes with missing values
Merging two dataframes together can result in missing values, espeically when doing an outer join. Using `groupby` + `apply` on such merged results seems to produce unstable result especially when grouping by columns of no... | diff --git a/dask/dataframe/multi.py b/dask/dataframe/multi.py
index 82d43f315..a46530fd2 100644
--- a/dask/dataframe/multi.py
+++ b/dask/dataframe/multi.py
@@ -1412,7 +1412,15 @@ def _split_partition(df, on, nsplits):
# add a "_partitions" column to perform the split.
if not isinstance(on, _Frame):
... |
dask__dask-10738 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/dataframe/core.py:_Frame._drop_duplicates_shuffle",
"dask/dataframe/core.py:_Frame.shuffle",
"dask/dataframe/core.py:DataFrame.merge",
"dask/dataframe/core.py:DataFrame.join... | dask/dask | 31b26dfa4bf15f23a7070155ac67e6ba285de76f | Deprecate ``shuffle`` keyword in favour of ``shuffle_method`` for DataFrame methods
dask-expr already changed the shuffle keyword to be a bit more explicit, we should deprecate this here to enforce when moving over
Get us consistent with the config option as well | diff --git a/dask/dataframe/core.py b/dask/dataframe/core.py
index 7cddc42d9..e1e7904a4 100644
--- a/dask/dataframe/core.py
+++ b/dask/dataframe/core.py
@@ -84,6 +84,7 @@ from dask.utils import (
M,
OperatorMethodMixin,
_deprecated,
+ _deprecated_kwarg,
apply,
derived_from,
funcname,
@@... |
dask__dask-10743 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/dataframe/core.py:_Frame._drop_duplicates_shuffle",
"dask/dataframe/core.py:_Frame.shuffle",
"dask/dataframe/core.py:DataFrame.merge",
"dask/dataframe/core.py:DataFrame.join... | dask/dask | 74e898f0ec712e8317ba86cc3b9d18b6b9922be0 | Deprecate fastparquet engine for read_parquet to enable switch to dask-expr
dask-expr will only support ``engine="pyarrow"``, so we should deprecate this here to allow users time to switch the engine before we switch to dask-expr or at least know that this change is coming. | diff --git a/continuous_integration/environment-3.10.yaml b/continuous_integration/environment-3.10.yaml
index 25a7bf2b1..7b8ee6ef0 100644
--- a/continuous_integration/environment-3.10.yaml
+++ b/continuous_integration/environment-3.10.yaml
@@ -27,7 +27,7 @@ dependencies:
- numpy=1.23
- pandas=1.5
- flask
- -... |
dask__dask-10750 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/dataframe/shuffle.py:sort_values",
"dask/dataframe/shuffle.py:set_index"
],
"edited_modules": [
"dask/dataframe/shuffle.py:sort_values",
"dask/dataframe/shuffle.... | dask/dask | 6d5b994cb58f295c27bd888de0f67c83ed568d3d | Deprecate ``npartitions="auto"`` for set_index and sort_values
The docs state that this makes a decision based on memory use
> If ‘auto’ then decide by memory use.
But that's just wrong
```
if npartitions == "auto":
repartition = True
npartitions = max(100, df.npartitions)
```
This i... | diff --git a/dask/dataframe/shuffle.py b/dask/dataframe/shuffle.py
index 270df6da4..663e18a1a 100644
--- a/dask/dataframe/shuffle.py
+++ b/dask/dataframe/shuffle.py
@@ -166,6 +166,11 @@ def sort_values(
return df.map_partitions(sort_function, **sort_kwargs)
if npartitions == "auto":
+ warnings.wa... |
dask__dask-10754 | [
{
"changes": {
"added_entities": [
"dask/dataframe/core.py:Series._view"
],
"added_modules": null,
"edited_entities": [
"dask/dataframe/core.py:Series.view",
"dask/dataframe/core.py:_convert_to_numeric"
],
"edited_modules": [
"dask/dataframe/co... | dask/dask | 3a91f5ea706d7acc2e836031b430e25d89402091 | Deprecate Series.view
Same as the others, that's deprecated in pandas for 3.0 so we can move ahead with it already
| diff --git a/dask/dataframe/core.py b/dask/dataframe/core.py
index e1e7904a4..9ac54c8ae 100644
--- a/dask/dataframe/core.py
+++ b/dask/dataframe/core.py
@@ -4652,8 +4652,17 @@ Dask Name: {name}, {layers}""".format(
token="monotonic_decreasing",
)
+ @_deprecated(
+ message=(
+ ... |
dask__dask-10765 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/core.py:validate_key"
],
"edited_modules": [
"dask/core.py:validate_key"
]
},
"file": "dask/core.py"
}
] | dask/dask | 63b6bb84015975c8466e80d1d498a293835ae936 | Exception from `validate_key` is misleading for composite keys
When validating a key tuple with an invalid component, the exception is currently not helpful for identifying the problem and might even be misleading:
```python
import numpy as np
from dask.core import validate_key
validate_key((1, np.int64(2), 3))
... | diff --git a/dask/core.py b/dask/core.py
index ef75ca563..e00e4fb8a 100644
--- a/dask/core.py
+++ b/dask/core.py
@@ -218,9 +218,26 @@ def iskey(key: object) -> bool:
def validate_key(key: object) -> None:
- """Validate the format of a dask key."""
- if not iskey(key):
- raise TypeError(f"Unexpected ke... |
dask__dask-10784 | [
{
"changes": {
"added_entities": [
"dask/base.py:_distributed_available"
],
"added_modules": [
"dask/base.py:_distributed_available"
],
"edited_entities": [
"dask/base.py:get_scheduler"
],
"edited_modules": [
"dask/base.py:get_scheduler"
... | dask/dask | b934d2db6dc5f3a467f6f12754999aebbf486417 | Deprecate compute keyword for set_index
This is only relevant if you have a disk based shuffle and I don't really know what the advantage of the keyword would be.
It seems like something that we should clean up | diff --git a/dask/base.py b/dask/base.py
index 465339336..bf06debce 100644
--- a/dask/base.py
+++ b/dask/base.py
@@ -14,7 +14,7 @@ import warnings
from collections import OrderedDict
from collections.abc import Callable, Hashable, Iterator, Mapping
from concurrent.futures import Executor
-from contextlib import cont... |
dask__dask-10796 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/dataframe/core.py:_determine_split_out_shuffle",
"dask/dataframe/core.py:_Frame.drop_duplicates",
"dask/dataframe/core.py:Index.drop_duplicates"
],
"edited_modules": [
... | dask/dask | 3e9ae492934e133547e5eaec5020186fad39898a | Deprecate axis in GroupBy cumulative transformers
Deprecate axis in
- cumsum
- cumprod
- cumcount
and please skip tests that test this behaviour for dask-expr | diff --git a/dask/dataframe/core.py b/dask/dataframe/core.py
index 67e829a52..6f58192a3 100644
--- a/dask/dataframe/core.py
+++ b/dask/dataframe/core.py
@@ -197,9 +197,9 @@ def _concat(args, ignore_index=False):
)
-def _determine_split_out_shuffle(shuffle, split_out):
+def _determine_split_out_shuffle(shuffle_... |
dask__dask-10800 | [
{
"changes": {
"added_entities": [
"dask/dataframe/core.py:_dummy_numpy_dispatcher"
],
"added_modules": [
"dask/dataframe/core.py:_dummy_numpy_dispatcher"
],
"edited_entities": [
"dask/dataframe/core.py:_Frame._cum_agg",
"dask/dataframe/core.py:Serie... | dask/dask | 3b502f1923bfe50a31fa1e6fd605f7942a2227af | Deprecate legacy keywords from reductions
Some of those keywords were part of pandas ages ago (before 1.0 was released), so we should rip them out while moving over to dask-expr
dtype keyword:
- sum
- prod
- product
- mean
- var
- std
- cumsum
- cumprod
out keyword:
- sum
- prod
- product
- max
-... | diff --git a/dask/dataframe/core.py b/dask/dataframe/core.py
index 6f58192a3..79091a18d 100644
--- a/dask/dataframe/core.py
+++ b/dask/dataframe/core.py
@@ -7,7 +7,7 @@ from functools import partial, wraps
from numbers import Integral, Number
from operator import getitem
from pprint import pformat
-from typing impor... |
dask__dask-10803 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"dask/dataframe/core.py:_Frame"
]
},
"file": "dask/dataframe/core.py"
}
] | dask/dask | 981c95b117df662e67c05d91a9d0e56e80b5a0c4 | Deprecate axis keyword in rolling
https://pandas.pydata.org/docs/dev/reference/api/pandas.DataFrame.rolling.html
pandas deprecated the arg as well | diff --git a/dask/dataframe/core.py b/dask/dataframe/core.py
index 79091a18d..ca09cb9c8 100644
--- a/dask/dataframe/core.py
+++ b/dask/dataframe/core.py
@@ -2158,6 +2158,7 @@ Dask Name: {name}, {layers}"""
else:
return lambda self, other: elemwise(op, self, other)
+ @_deprecated_kwarg("axis",... |
dask__dask-10812 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/routines.py:tensordot"
],
"edited_modules": [
"dask/array/routines.py:tensordot"
]
},
"file": "dask/array/routines.py"
}
] | dask/dask | 7373f4b80a6b1764fc6ab2a9726373207a92b2f4 | `dask.array.tensordot` bug: negative values in argument `axes` give wrong results.
**Describe the issue**:
While `numpy.tensordot` accepts negative axes, negative axes in `dask.array.tensordot` give wrong results.
**Minimal Complete Verifiable Example**:
```python
import numpy as np
import dask.array as da
... | diff --git a/dask/array/routines.py b/dask/array/routines.py
index 4780f71d7..a56e9179b 100644
--- a/dask/array/routines.py
+++ b/dask/array/routines.py
@@ -345,6 +345,7 @@ def tensordot(lhs, rhs, axes=2):
if concatenate:
return intermediate
else:
+ left_axes = [ax if ax >= 0 else lhs.ndim + a... |
dask__dask-10827 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/dataframe/__init__.py:raise_not_implemented_error"
],
"edited_modules": [
"dask/dataframe/__init__.py:raise_not_implemented_error"
]
},
"file": "dask/dataframe/__i... | dask/dask | e72f93e4942fbc4cc70170cf1192e3dd0a69275a | Deprecate convert_dtype in apply
deprecated in pandas, so lets rip it out now before we move to dask-expr | diff --git a/dask/dataframe/__init__.py b/dask/dataframe/__init__.py
index b247c4b76..0f64a152d 100644
--- a/dask/dataframe/__init__.py
+++ b/dask/dataframe/__init__.py
@@ -14,67 +14,82 @@ def _dask_expr_enabled() -> bool:
if _dask_expr_enabled():
- from dask_expr import (
- DataFrame,
- Index,
- ... |
dask__dask-10846 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"dask/dataframe/core.py:_Frame"
]
},
"file": "dask/dataframe/core.py"
},
{
"changes": {
"added_entities": null,
"added_modules": null,
... | dask/dask | 16da9a1ed19a2f63cedb9176d1b49c2ccab51786 | Deprecate method and limit from fillna
both of them are deprecated in pandas, so lets remove before we switch to dask-expr
Also lets deprecated downcast from bfill, ffill and fillna | diff --git a/dask/dataframe/core.py b/dask/dataframe/core.py
index ca09cb9c8..e5b5a40bb 100644
--- a/dask/dataframe/core.py
+++ b/dask/dataframe/core.py
@@ -1880,6 +1880,7 @@ Dask Name: {name}, {layers}"""
else:
return self
+ @_deprecated_kwarg("method", None, comment="Use ffill or bfill inst... |
dask__dask-10888 | [
{
"changes": {
"added_entities": [
"dask/array/routines.py:_isnonzero"
],
"added_modules": [
"dask/array/routines.py:_isnonzero"
],
"edited_entities": [
"dask/array/routines.py:isnonzero"
],
"edited_modules": [
"dask/array/routines.py:isn... | dask/dask | 83368b58da67d5847dccf02a5c5fdfe5bb59ab6e | Tests for dummy data generation failing
Looks like there are some tests failing for the dummy data generation
https://dask.github.io/dask/test_short_report.html
https://github.com/dask/dask/actions/runs/7650514559/job/20846717103 | diff --git a/continuous_integration/environment-3.10.yaml b/continuous_integration/environment-3.10.yaml
index d917a0781..82f301b36 100644
--- a/continuous_integration/environment-3.10.yaml
+++ b/continuous_integration/environment-3.10.yaml
@@ -23,7 +23,7 @@ dependencies:
- pytest-xdist
- moto<5
# Optional dep... |
dask__dask-10921 | [
{
"changes": {
"added_entities": [
"dask/cli.py:config_set",
"dask/cli.py:save_config"
],
"added_modules": [
"dask/cli.py:config_set",
"dask/cli.py:save_config"
],
"edited_entities": [
"dask/cli.py:config_get",
"dask/cli.py:config_lis... | dask/dask | 76b255e3f3b8b116b6046d03105e3ceae40386b6 | Deprecation warning is pretty intense
```python
In [1]: import dask
In [2]: import dask.dataframe
<ipython-input-2-1d704cbd4e0a>:1: DeprecationWarning: The current Dask DataFrame implementation is deprecated.
In a future release, Dask DataFrame will use new implementation that
contains several improvements inclu... | diff --git a/dask/cli.py b/dask/cli.py
index 5ec92e209..f28ea1f33 100644
--- a/dask/cli.py
+++ b/dask/cli.py
@@ -1,11 +1,12 @@
from __future__ import annotations
+import pathlib
import warnings
from functools import reduce
import click
import importlib_metadata
-from yaml import dump
+import yaml
import das... |
dask__dask-10959 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/_compatibility.py:entry_points"
],
"edited_modules": [
"dask/_compatibility.py:entry_points"
]
},
"file": "dask/_compatibility.py"
},
{
"changes": {
... | dask/dask | 9531ebe9e8481333f6ae35091b85fd4912fa37e0 | Sphinx API documentation for `dask.config` shows the whole config
https://docs.dask.org/en/stable/configuration.html#api
The rendered signature for `get`, `set`, `refresh` contains a snapshot of the whole dask config, which makes it hard and confusing to read. | diff --git a/continuous_integration/environment-3.12.yaml b/continuous_integration/environment-3.12.yaml
index fac2a8f5f..7e112d4a3 100644
--- a/continuous_integration/environment-3.12.yaml
+++ b/continuous_integration/environment-3.12.yaml
@@ -12,7 +12,6 @@ dependencies:
- cloudpickle
- partd
- fsspec
- - im... |
dask__dask-10972 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/blockwise.py:_optimize_blockwise"
],
"edited_modules": [
"dask/blockwise.py:_optimize_blockwise"
]
},
"file": "dask/blockwise.py"
},
{
"changes": {
"... | dask/dask | 9c20facdfb5f20e28f0e9259147283f8a7982728 | Fix CSV encoding with pandas 1.0
With pandas 1.0.0rc0, the test `dask/dataframe/io/tests/test_csv.py::test_encoding_gh601[utf-16]` is failing
```pytb
pytest dask/dataframe/io/tests/test_csv.py -k test_encoding_gh601[utf-16] -v
================================================================================ test se... | diff --git a/dask/blockwise.py b/dask/blockwise.py
index 51d822418..1be3c6f3f 100644
--- a/dask/blockwise.py
+++ b/dask/blockwise.py
@@ -1138,16 +1138,14 @@ def _optimize_blockwise(full_graph, keys=()):
blockwise_layers.add(dep)
# traverse further to this child's children
+ ... |
dask__dask-11023 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/base.py:is_dask_collection"
],
"edited_modules": [
"dask/base.py:is_dask_collection"
]
},
"file": "dask/base.py"
},
{
"changes": {
"added_entities": ... | dask/dask | 8c2199e3862c6320721815e87ebd5b7ab52457a4 | value_counts with NaN sometimes raises ValueError: No objects to concatenate
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthewrock... | diff --git a/dask/base.py b/dask/base.py
index 737ca24f3..ec6c49933 100644
--- a/dask/base.py
+++ b/dask/base.py
@@ -235,7 +235,7 @@ def is_dask_collection(x) -> bool:
return False
pkg_name = getattr(type(x), "__module__", "").split(".")[0]
- if pkg_name == "dask_expr":
+ if pkg_name in ("dask_exp... |
dask__dask-11118 | [
{
"changes": {
"added_entities": [
"dask/dataframe/groupby.py:_adjust_for_arrow_na"
],
"added_modules": [
"dask/dataframe/groupby.py:_adjust_for_arrow_na"
],
"edited_entities": [
"dask/dataframe/groupby.py:_finalize_mean",
"dask/dataframe/groupby.py:... | dask/dask | 017adfb1794cd3debef0b7a4b0e8b6a587da8531 | When using PyArrow dtypes, aggregations create NaNs of unexpected type
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthewrocklin.co... | diff --git a/dask/dataframe/groupby.py b/dask/dataframe/groupby.py
index a1350694f..5e6c23a9d 100644
--- a/dask/dataframe/groupby.py
+++ b/dask/dataframe/groupby.py
@@ -1227,10 +1227,23 @@ def _apply_func_to_columns(df_like, prefix, func):
def _finalize_mean(df, sum_column, count_column):
- return df[sum_column... |
dask__dask-1113 | [
{
"changes": {
"added_entities": [
"dask/array/core.py:Array.copy"
],
"added_modules": null,
"edited_entities": null,
"edited_modules": [
"dask/array/core.py:Array"
]
},
"file": "dask/array/core.py"
}
] | dask/dask | 6e7fea680dc7eaf6f96452e00625e0466c110532 | Add a dummy .copy() method on dask arrays?
There's no need to copy the data in dask arrays, because they're (currently) immutable. Still, it's common to copy numpy arrays to be on the safe side, so it might be nice to add this for duck-array compatibility. | diff --git a/dask/array/core.py b/dask/array/core.py
index b85b5c2c0..a6e10cc55 100644
--- a/dask/array/core.py
+++ b/dask/array/core.py
@@ -1377,6 +1377,12 @@ class Array(Base):
out._chunks = chunks
return out
+ def copy(self):
+ """
+ Copy array. This is a no-op for dask.arrays, ... |
dask__dask-11183 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/dataframe/__init__.py:_dask_expr_enabled"
],
"edited_modules": [
"dask/dataframe/__init__.py:_dask_expr_enabled"
]
},
"file": "dask/dataframe/__init__.py"
}
] | dask/dask | 1755a718125ef2ea18e9c079ecf1509b7b6be730 | [FEA] Add official mechanism to check if query-planning is enabled in ``dask.dataframe``
The value of the `"dataframe.query-planning"` config currently dictates whether or not `dask.dataframe` will use dask-expr under the hood. However, after `dask.dataframe` is first imported, the value of the `"dataframe.query-planni... | diff --git a/dask/dataframe/__init__.py b/dask/dataframe/__init__.py
index 029eef5c5..1a3e128f6 100644
--- a/dask/dataframe/__init__.py
+++ b/dask/dataframe/__init__.py
@@ -5,19 +5,37 @@ import warnings
from packaging.version import Version
+# The "dataframe.query-planning" config can only be processed once
+DASK_... |
dask__dask-11233 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/dataframe/backends.py:_nonempty_series"
],
"edited_modules": [
"dask/dataframe/backends.py:_nonempty_series"
]
},
"file": "dask/dataframe/backends.py"
},
{
... | dask/dask | 6a04b4ed70934b548d25a793eed90f033a690531 | Roundtripping timezone-aware DataFrame through parquet doesn't preserve timestamp resolution
While diagnosing some of the failures we're seeing over in https://github.com/coiled/dask-bigquery/pull/81, I stumbled across an issue with roundtripping timezone-aware timeseries data through parquet with Dask. Here's a minima... | diff --git a/dask/dataframe/backends.py b/dask/dataframe/backends.py
index b2b4b63d9..afdf46522 100644
--- a/dask/dataframe/backends.py
+++ b/dask/dataframe/backends.py
@@ -436,7 +436,7 @@ def _nonempty_series(s, idx=None):
data = [s.iloc[0]] * 2
elif isinstance(dtype, pd.DatetimeTZDtype):
entry ... |
dask__dask-1126 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/callbacks.py:Callback.__init__"
],
"edited_modules": [
"dask/callbacks.py:Callback"
]
},
"file": "dask/callbacks.py"
}
] | dask/dask | 5d94595499ebf0dd7b7bfcccca328f7d0fca7b7e | Callback __init__() overrides subclass callback definitions
The `__init__` method in `Callback` is:
```
def __init__(self, start=None, pretask=None, posttask=None, finish=None):
self._start = start
self._pretask = pretask
self._posttask = posttask
self._finish = finish
```
w... | diff --git a/dask/callbacks.py b/dask/callbacks.py
index 55e7a5a1b..61aba8676 100644
--- a/dask/callbacks.py
+++ b/dask/callbacks.py
@@ -44,10 +44,14 @@ class Callback(object):
"""
def __init__(self, start=None, pretask=None, posttask=None, finish=None):
- self._start = start
- self._pretask =... |
dask__dask-11288 | [
{
"changes": {
"added_entities": [
"dask/array/core.py:_as_dtype"
],
"added_modules": [
"dask/array/core.py:_as_dtype"
],
"edited_entities": [
"dask/array/core.py:asarray",
"dask/array/core.py:asanyarray"
],
"edited_modules": [
"d... | dask/dask | 1ba9c5bf9d0b005b89a04804f29c16e5f0f2dadf | BUG: `array.asarray` does not respect `dtype` arg
**Describe the issue**:
`dask.array.asarray` does not respect the `dtype` argument.
**Minimal Complete Verifiable Example**:
```python
>>> import numpy as np
>>> import dask.array as da
>>> Zm = da.asarray([[1, 2, 3]])
>>> Zm
dask.array<array, shape=(1, 3... | diff --git a/dask/array/core.py b/dask/array/core.py
index b710fe491..3009dcb11 100644
--- a/dask/array/core.py
+++ b/dask/array/core.py
@@ -4524,6 +4524,13 @@ def retrieve_from_ooc(
return load_dsk
+def _as_dtype(a, dtype):
+ if dtype is None:
+ return a
+ else:
+ return a.astype(dtype)
+
... |
dask__dask-11291 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/_shuffle.py:shuffle",
"dask/array/_shuffle.py:_shuffle"
],
"edited_modules": [
"dask/array/_shuffle.py:shuffle",
"dask/array/_shuffle.py:_shuffle"
]
... | dask/dask | 33f07ecf403a8aa452bf6a9829a8fa72cec142a5 | Ensure that array-shuffle with range-like full indexer is a no-op
Assume
```
arr = da.from_array(...)
arr.shuffle(indexer)
```
where the flattened indexer is basically
```
list(range(0, len(are))
```
where the sub-lists also match the chunk structure
This should be a no-op. This is unlikely to be tr... | diff --git a/dask/array/_shuffle.py b/dask/array/_shuffle.py
index 89f435d7b..6e3dd2e4a 100644
--- a/dask/array/_shuffle.py
+++ b/dask/array/_shuffle.py
@@ -71,6 +71,9 @@ def shuffle(x, indexer: list[list[int]], axis):
out_name = f"shuffle-{token}"
chunks, layer = _shuffle(x.chunks, indexer, axis, x.name, o... |
dask__dask-11300 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/_shuffle.py:concatenate_arrays"
],
"edited_modules": [
"dask/array/_shuffle.py:concatenate_arrays"
]
},
"file": "dask/array/_shuffle.py"
},
{
"change... | dask/dask | 1ba9c5bf9d0b005b89a04804f29c16e5f0f2dadf | `2024.08.0` array slicing does not preserve masks
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthewrocklin.com/blog/work/2018/02/2... | diff --git a/dask/array/_shuffle.py b/dask/array/_shuffle.py
index 37aacb4bb..89f435d7b 100644
--- a/dask/array/_shuffle.py
+++ b/dask/array/_shuffle.py
@@ -8,6 +8,7 @@ import numpy as np
from dask import config
from dask.array.chunk import getitem
from dask.array.core import Array, unknown_chunk_message
+from dask.... |
dask__dask-11301 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/_shuffle.py:concatenate_arrays"
],
"edited_modules": [
"dask/array/_shuffle.py:concatenate_arrays"
]
},
"file": "dask/array/_shuffle.py"
},
{
"change... | dask/dask | 1ba9c5bf9d0b005b89a04804f29c16e5f0f2dadf | Dask 2024.8 started failing when indexing result of numpy.flatnonzero
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthewrocklin.com... | diff --git a/dask/array/_shuffle.py b/dask/array/_shuffle.py
index 37aacb4bb..89f435d7b 100644
--- a/dask/array/_shuffle.py
+++ b/dask/array/_shuffle.py
@@ -8,6 +8,7 @@ import numpy as np
from dask import config
from dask.array.chunk import getitem
from dask.array.core import Array, unknown_chunk_message
+from dask.... |
dask__dask-11303 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/order.py:order"
],
"edited_modules": [
"dask/order.py:order"
]
},
"file": "dask/order.py"
}
] | dask/dask | 67b2852d5f48d46527e3ac9c78122b483aef4057 | order: dask order returns suboptimal ordering for xr.rechunk().groupby().reduce("cohorts")
@fjetter and I looked into a problematic pattern for xarray this morning and identified that dask order is missbehaving here.
dask order is currently returning a suboptimal execution order for the pattern:
```
xarr =. ...
... | diff --git a/dask/order.py b/dask/order.py
index 4de05c2b4..62fb678b2 100644
--- a/dask/order.py
+++ b/dask/order.py
@@ -208,6 +208,9 @@ def order(
_sort_keys_cache: dict[Key, tuple[int, int, int, int, str]] = {}
+ leafs_connected_to_loaded_roots: set[Key] = set()
+ processed_roots = set()
+
def sor... |
dask__dask-11354 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": null,
"edited_modules": null
},
"file": "dask/_compatibility.py"
},
{
"changes": {
"added_entities": [
"dask/array/core.py:_convert_int_chunk_to_tuple",
"dask/array/core... | dask/dask | 31d57d34c1c72c551200355a738bf6cf1b1aed78 | Improve how normalize_chunks selects chunk sizes if auto is given
Specifying auto for a dimension when new chunks are selected like in rechunking allows us to choose a chunk size that we think is a good fit and efficient.
This is for now an issue to collect thoughts from others and feedback, I am pretty sure that I... | diff --git a/continuous_integration/environment-mindeps-optional.yaml b/continuous_integration/environment-mindeps-optional.yaml
index efb422182..6681cc765 100644
--- a/continuous_integration/environment-mindeps-optional.yaml
+++ b/continuous_integration/environment-mindeps-optional.yaml
@@ -16,7 +16,7 @@ dependencies:... |
dask__dask-11393 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/dataframe/utils.py:check_matching_columns"
],
"edited_modules": [
"dask/dataframe/utils.py:check_matching_columns"
]
},
"file": "dask/dataframe/utils.py"
}
] | dask/dask | e71d4361a57e7990e4a325021e6382877ac9ab49 | "Order of columns does not match" error should give an extra info about expected order
It is not clear what order we should provide when we see the error "Order of columns does not match":
```python
import pandas as pd
import dask.dataframe as dd
data = {
'id': [1, 1, 1, 2, 2, 2],
'date': pd.to_datetime... | diff --git a/.github/workflows/update-gpuci.yml b/.github/workflows/update-gpuci.yml
index b657cb091..bb8c55456 100644
--- a/.github/workflows/update-gpuci.yml
+++ b/.github/workflows/update-gpuci.yml
@@ -21,7 +21,7 @@ jobs:
- name: Get latest cuDF nightly version
id: cudf_latest
- uses: jacobt... |
dask__dask-11437 | [
{
"changes": {
"added_entities": [
"dask/_task_spec.py:GraphNode.dependencies"
],
"added_modules": null,
"edited_entities": [
"dask/_task_spec.py:Alias.__init__",
"dask/_task_spec.py:Alias.dependencies",
"dask/_task_spec.py:DataNode.__init__",
"das... | dask/dask | 786e8f0de0ff1e69b92c28ce3f70c62d640a6294 | Deprecate legacy DataFrame implementation
We haven't done anything on the old implementation in a while and bugs are only fixed for the new one. I.e. the old version is not compatible with newer pandas releases and will break horribly with pandas 3 for example.
I think we should deprecate the mode and remove in a fe... | diff --git a/continuous_integration/environment-3.12.yaml b/continuous_integration/environment-3.12.yaml
index 55542bd03..9c9cf358d 100644
--- a/continuous_integration/environment-3.12.yaml
+++ b/continuous_integration/environment-3.12.yaml
@@ -71,6 +71,7 @@ dependencies:
- python-xxhash
- mmh3
- jinja2
+ - m... |
dask__dask-11441 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/base.py:visualize_dsk"
],
"edited_modules": [
"dask/base.py:visualize_dsk"
]
},
"file": "dask/base.py"
},
{
"changes": {
"added_entities": null,
... | dask/dask | 8eac2fa9931a206f3b80e06681e9768423c588f8 | Make it easier to enable linear fusion for delayed objects
Delayed can be used to express embarrassingly parallel chains of operations. Certain configurations benefit from processing one chain completely before starting a new one (high memory usage for example). This is currently not possible by default because other t... | diff --git a/continuous_integration/environment-3.12.yaml b/continuous_integration/environment-3.12.yaml
index 55542bd03..9c9cf358d 100644
--- a/continuous_integration/environment-3.12.yaml
+++ b/continuous_integration/environment-3.12.yaml
@@ -71,6 +71,7 @@ dependencies:
- python-xxhash
- mmh3
- jinja2
+ - m... |
dask__dask-11450 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/_task_spec.py:Alias.__repr__",
"dask/_task_spec.py:Task.__init__",
"dask/_task_spec.py:Task.__repr__",
"dask/_task_spec.py:execute_graph"
],
"edited_modules": [
... | dask/dask | 017adfb1794cd3debef0b7a4b0e8b6a587da8531 | Slicing an Array with full slices along every dimension should just map the keys
```
ds = xr.open_zarr(
"gs://weatherbench2/datasets/era5/1959-2023_01_10-wb13-6h-1440x721.zarr",
#consolidated=True
)
ds = ds[variables].sel(time=slice("2020-01-01", "2022-12-31"))
```
The dataset has one point per chunk a... | diff --git a/dask/_task_spec.py b/dask/_task_spec.py
index 3b563aced..a319ac865 100644
--- a/dask/_task_spec.py
+++ b/dask/_task_spec.py
@@ -84,7 +84,7 @@ from typing import Any, TypeVar, cast, overload
from dask.sizeof import sizeof
from dask.typing import Key as KeyType
-from dask.utils import is_namedtuple_insta... |
dask__dask-11464 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/_task_spec.py:convert_legacy_task",
"dask/_task_spec.py:convert_legacy_graph",
"dask/_task_spec.py:resolve_aliases",
"dask/_task_spec.py:Task.__repr__",
"dask/_task_... | dask/dask | a0783a8d46ffa0203906c47c7495a7e5bc09e691 | einsum needs more memory when chunking the tensor
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthewrocklin.com/blog/work/2018/02/2... | diff --git a/dask/_task_spec.py b/dask/_task_spec.py
index e02e6cbb1..a79ceb35c 100644
--- a/dask/_task_spec.py
+++ b/dask/_task_spec.py
@@ -272,7 +272,10 @@ def convert_legacy_task(
try:
if isinstance(task, (bytes, int, float, str, tuple)):
if task in all_keys:
- return Alias(... |
dask__dask-11479 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/core.py:store"
],
"edited_modules": [
"dask/array/core.py:store"
]
},
"file": "dask/array/core.py"
},
{
"changes": {
"added_entities": null,
... | dask/dask | b5ed6c5529c347a210cda856f6cf9f1609203e2a | xarray.rolling().construct() and sliding_window_view chunking behaviour
Using ``.rolling().construct()`` will inject new dimensions into an array with ``sliding_window_view`` under the hood. NumPy is clever about this by arranging things to be a view of the underlying array and thus not increasing the memory footprint.... | diff --git a/dask/array/core.py b/dask/array/core.py
index 3065406a9..b288d7d2d 100644
--- a/dask/array/core.py
+++ b/dask/array/core.py
@@ -1111,6 +1111,7 @@ def store(
regions: tuple[slice, ...] | Collection[tuple[slice, ...]] | None = None,
compute: bool = True,
return_stored: bool = False,
+ load_... |
dask__dask-1150 | [
{
"changes": {
"added_entities": [
"dask/array/random.py:RandomState.multinomial"
],
"added_modules": null,
"edited_entities": [
"dask/array/random.py:RandomState._wrap"
],
"edited_modules": [
"dask/array/random.py:RandomState"
]
},
"file... | dask/dask | 71e3e413d6e00942de3ff32a3ba378408f2648e9 | Multinomial random generator
`dask/array/random.py` is missing a multinomial random generator (there is aplaceholder `# multinomial`).
Will dask have a multinomial random generator at some point? Does it require a significantly different approach than the other generators? | diff --git a/dask/array/random.py b/dask/array/random.py
index 71050b304..9a1b0b364 100644
--- a/dask/array/random.py
+++ b/dask/array/random.py
@@ -44,8 +44,13 @@ class RandomState(object):
self._numpy_state.seed(seed)
def _wrap(self, func, *args, **kwargs):
+ """ Wrap numpy random function to p... |
dask__dask-1152 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/core.py:asarray",
"dask/array/core.py:is_scalar_for_elemwise",
"dask/array/core.py:elemwise"
],
"edited_modules": [
"dask/array/core.py:asarray",
"... | dask/dask | 472ce70b9c19a075764f7614e884b2afc14c44cb | Array astype breaks when given a type instead of a dtype object
The code below fails in dask 0.9.0, numpy 1.11.0, toolz 0.7.4, Python 2.7:
```py
import numpy as np
import dask.array as da
a = np.arange(5).astype(np.int32)
d = da.from_array(a, (1,))
print(d.dtype)
e = d.astype(np.int16)
print(e.dtype)
print(e... | diff --git a/dask/array/core.py b/dask/array/core.py
index a82f73979..2cf8f9573 100644
--- a/dask/array/core.py
+++ b/dask/array/core.py
@@ -2062,7 +2062,7 @@ def asarray(array):
"""
if not isinstance(array, Array):
name = 'asarray-' + tokenize(array)
- if not hasattr(array, 'shape'):
+ ... |
dask__dask-11541 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/core.py:from_zarr"
],
"edited_modules": [
"dask/array/core.py:from_zarr"
]
},
"file": "dask/array/core.py"
},
{
"changes": {
"added_entities": ... | dask/dask | 5b115c4360fec6a4aa6e0edf8ad1d89a87c986dd | bug in dask.array.reshape_blockwise
**Minimal Complete Verifiable Example**:
```python
import dask.array
reshape_blockwise(dask.array.ones((3,)), shape=(3,), chunks=((3,),))
```
```
ValueError: Setting chunks is not allowed when reducing the number of dimensions.
```
cc @phofl
| diff --git a/dask/array/core.py b/dask/array/core.py
index 10736af6f..0a7ebeb1b 100644
--- a/dask/array/core.py
+++ b/dask/array/core.py
@@ -3754,9 +3754,9 @@ def from_zarr(
store = zarr.storage.FSStore(url, **storage_options)
else:
store = url
- z = zarr.open_array(store=s... |
dask__dask-11605 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/_task_spec.py:parse_input",
"dask/_task_spec.py:NestedContainer.__init__",
"dask/_task_spec.py:NestedContainer.to_container"
],
"edited_modules": [
"dask/_task_s... | dask/dask | 44c75d08f6b693c53315c7926b5681af33696f5d | map_overlap fails if any chunk is smaler than overlap
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthewrocklin.com/blog/work/2018/... | diff --git a/dask/_task_spec.py b/dask/_task_spec.py
index 316f1805a..438fdc3c6 100644
--- a/dask/_task_spec.py
+++ b/dask/_task_spec.py
@@ -84,7 +84,7 @@ _anom_count = itertools.count()
def parse_input(obj: Any) -> object:
"""Tokenize user input into GraphNode objects
- Note: This is similar to `convert_old... |
dask__dask-11608 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/_task_spec.py:parse_input",
"dask/_task_spec.py:NestedContainer.__init__",
"dask/_task_spec.py:NestedContainer.to_container"
],
"edited_modules": [
"dask/_task_s... | dask/dask | 24c492095a791696ce6611e9d2294274f4592911 | `NestedContainer.to_container` method gets tracked individually per NestedContainer object
Looking into https://github.com/dask/distributed/issues/8958, I've noticed that for each `NestedContainer` object, its bound `to_container` method is tracked individually by the GC. This accounts for ~500k of 9MM objects in my wo... | diff --git a/dask/_task_spec.py b/dask/_task_spec.py
index 316f1805a..438fdc3c6 100644
--- a/dask/_task_spec.py
+++ b/dask/_task_spec.py
@@ -84,7 +84,7 @@ _anom_count = itertools.count()
def parse_input(obj: Any) -> object:
"""Tokenize user input into GraphNode objects
- Note: This is similar to `convert_old... |
dask__dask-11609 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/_shuffle.py:_shuffle"
],
"edited_modules": [
"dask/array/_shuffle.py:_shuffle"
]
},
"file": "dask/array/_shuffle.py"
},
{
"changes": {
"added_e... | dask/dask | 076b1f4d59283709127e5f7fe3b0c045127b7a92 | Xarray to_dask_dataframe consume more memory on V2024.12.0 compared to V2024.10.0
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthe... | diff --git a/dask/array/_shuffle.py b/dask/array/_shuffle.py
index 2c926d317..5851a4a99 100644
--- a/dask/array/_shuffle.py
+++ b/dask/array/_shuffle.py
@@ -220,7 +220,7 @@ def _shuffle(chunks, indexer, axis, in_name, out_name, token):
intermediates = dict()
merges = dict()
- dtype = np.min_scalar_type(m... |
dask__dask-11611 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/core.py:_should_delegate",
"dask/array/core.py:_vindex_array"
],
"edited_modules": [
"dask/array/core.py:_should_delegate",
"dask/array/core.py:_vindex_arr... | dask/dask | fe465e055293851a1920bd9a318c92d1953a8b65 | Dask Array does not yield binary operator priority when used with another type with higher `__array_priority__`
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Min... | diff --git a/continuous_integration/environment-3.10.yaml b/continuous_integration/environment-3.10.yaml
index 7e7f8a514..12719c0e2 100644
--- a/continuous_integration/environment-3.10.yaml
+++ b/continuous_integration/environment-3.10.yaml
@@ -18,6 +18,7 @@ dependencies:
- pre-commit
- pytest
- pytest-cov
+ ... |
dask__dask-11622 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/core.py:auto_chunks"
],
"edited_modules": [
"dask/array/core.py:auto_chunks"
]
},
"file": "dask/array/core.py"
}
] | dask/dask | 16b986ef23302dd8179605c973b7744dcdcd5f13 | Rechunking an array of specic shape with dtype float32 using `chunks='auto'` creates chunks of size 0
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug ... | diff --git a/dask/array/core.py b/dask/array/core.py
index 7dfff2b0f..898f5a33e 100644
--- a/dask/array/core.py
+++ b/dask/array/core.py
@@ -3329,7 +3329,8 @@ def auto_chunks(chunks, shape, limit, dtype, previous_chunks=None):
new_chunk += c
else:
... |
dask__dask-11628 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/core.py:_vindex_array"
],
"edited_modules": [
"dask/array/core.py:_vindex_array"
]
},
"file": "dask/array/core.py"
},
{
"changes": {
"added_ent... | dask/dask | 4fb8993ce15831c03ff21575db7fd3acdcac9ebe | einsum's auto-rechunking can drastically overestimate output chunk size
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthewrocklin.c... | diff --git a/dask/array/core.py b/dask/array/core.py
index c2f303c69..4c96f09f1 100644
--- a/dask/array/core.py
+++ b/dask/array/core.py
@@ -23,8 +23,7 @@ from typing import Any, Literal, TypeVar, Union, cast
import numpy as np
from numpy.typing import ArrayLike
from packaging.version import Version
-from tlz import... |
dask__dask-11698 | [
{
"changes": {
"added_entities": [
"dask/dataframe/dask_expr/_reductions.py:ValueCounts.shuffle_by_index"
],
"added_modules": null,
"edited_entities": [
"dask/dataframe/dask_expr/_reductions.py:ValueCounts.split_by"
],
"edited_modules": [
"dask/datafra... | dask/dask | d8eb38e97db5a83d893b178a2bb8ec7c34bd8f29 | `.value_counts()` failed to aggregate across partitions
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthewrocklin.com/blog/work/2018/02... | diff --git a/dask/dataframe/dask_expr/_reductions.py b/dask/dataframe/dask_expr/_reductions.py
index 5b5f248dd..5ba667896 100644
--- a/dask/dataframe/dask_expr/_reductions.py
+++ b/dask/dataframe/dask_expr/_reductions.py
@@ -1427,6 +1427,7 @@ class ValueCounts(ReductionConstantDim):
reduction_chunk = M.value_count... |
dask__dask-11699 | [
{
"changes": {
"added_entities": null,
"added_modules": null,
"edited_entities": [
"dask/array/slicing.py:slice_with_newaxes"
],
"edited_modules": [
"dask/array/slicing.py:slice_with_newaxes"
]
},
"file": "dask/array/slicing.py"
},
{
"changes":... | dask/dask | d8eb38e97db5a83d893b178a2bb8ec7c34bd8f29 | Array slicing with boolean mask and `np.newaxis` stopped working at some point
<!-- Please include a self-contained copy-pastable example that generates the issue if possible.
Please be concise with code posted. See guidelines below on how to provide a good bug report:
- Craft Minimal Bug Reports http://matthewrockli... | diff --git a/dask/array/slicing.py b/dask/array/slicing.py
index 0927e2613..473c42646 100644
--- a/dask/array/slicing.py
+++ b/dask/array/slicing.py
@@ -12,7 +12,7 @@ import numpy as np
from tlz import concat, memoize, merge, pluck
from dask import core
-from dask._task_spec import Alias, Task, TaskRef
+from dask._... |
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