Datasets:

OpenMed
/

pgc-anxiety

SNPID string	CHR int64	BP int64	Allele1 string	Allele2 string	Freq1 float64	Effect float64	StdErr float64	P.value float64	TotalN float64	_source_file string
rs1000033	1	226,580,387	t	g	0.824	-0.0057	0.0058	0.3288	18,186	anxiety.meta.full.fs.tbl.gz
rs1000050	1	162,736,463	t	c	0.8515	0.0091	0.0094	0.3323	15,299	anxiety.meta.full.fs.tbl.gz
rs1000070	1	222,359,612	t	c	0.3404	-0.0057	0.005	0.2515	18,186	anxiety.meta.full.fs.tbl.gz
rs1000073	1	157,255,396	a	g	0.4087	0.005	0.0046	0.2811	18,186	anxiety.meta.full.fs.tbl.gz
rs1000075	1	95,166,832	t	c	0.3364	-0.0091	0.0048	0.057	18,186	anxiety.meta.full.fs.tbl.gz
rs1000085	1	66,857,915	c	g	0.2164	-0.006	0.0081	0.4555	15,299	anxiety.meta.full.fs.tbl.gz
rs1000127	1	63,432,716	t	c	0.707	0.0029	0.0049	0.5588	18,186	anxiety.meta.full.fs.tbl.gz
rs1000184	1	8,640,831	c	g	0.2347	0.0041	0.0053	0.437	18,186	anxiety.meta.full.fs.tbl.gz
rs1000282	1	209,894,785	t	c	0.7991	0.0022	0.0057	0.6971	18,186	anxiety.meta.full.fs.tbl.gz
rs1000283	1	209,894,661	a	g	0.2027	-0.0035	0.0056	0.536	18,186	anxiety.meta.full.fs.tbl.gz
rs1000312	1	205,505,477	a	g	0.3575	0.0026	0.0051	0.6144	18,186	anxiety.meta.full.fs.tbl.gz
rs1000313	1	15,405,489	a	g	0.7954	0.0012	0.0082	0.889	15,299	anxiety.meta.full.fs.tbl.gz
rs1000314	1	15,405,907	a	g	0.7748	0.0037	0.0054	0.4908	18,186	anxiety.meta.full.fs.tbl.gz
rs1000315	1	15,406,111	t	c	0.0612	0.004	0.0109	0.7141	18,186	anxiety.meta.full.fs.tbl.gz
rs1000348	1	15,041,242	c	g	0.596	-0.0006	0.0046	0.8873	18,186	anxiety.meta.full.fs.tbl.gz
rs1000352	1	209,675,578	t	c	0.8985	0.0106	0.0074	0.1506	18,186	anxiety.meta.full.fs.tbl.gz
rs1000360	1	216,228,343	c	g	0.3997	0.0063	0.0049	0.1927	18,186	anxiety.meta.full.fs.tbl.gz
rs1000364	1	55,769,791	t	c	0.5905	-0.0029	0.0045	0.5227	18,186	anxiety.meta.full.fs.tbl.gz
rs1000370	1	40,998,406	t	g	0.3758	0.006	0.0046	0.197	18,186	anxiety.meta.full.fs.tbl.gz
rs1000382	1	175,866,321	c	g	0.7427	-0.0055	0.0062	0.3763	18,186	anxiety.meta.full.fs.tbl.gz
rs1000417	1	34,007,886	a	g	0.7802	-0.0075	0.008	0.3491	15,299	anxiety.meta.full.fs.tbl.gz
rs1000418	1	34,008,297	a	g	0.7854	0.0041	0.0055	0.4535	18,186	anxiety.meta.full.fs.tbl.gz
rs1000431	1	28,225,114	t	c	0.3937	0.0098	0.0046	0.03309	18,186	anxiety.meta.full.fs.tbl.gz
rs1000432	1	28,225,119	t	c	0.6076	-0.0101	0.0046	0.0281	18,186	anxiety.meta.full.fs.tbl.gz
rs1000451	1	244,187,847	c	g	0.9408	-0.0874	0.066	0.1854	1,155.02	anxiety.meta.full.fs.tbl.gz
rs1000452	1	244,188,049	t	c	0.7264	-0.0042	0.0054	0.4356	18,186	anxiety.meta.full.fs.tbl.gz
rs1000476	1	58,921,516	t	c	0.9291	-0.0107	0.0098	0.2782	18,186	anxiety.meta.full.fs.tbl.gz
rs1000494	1	29,789,167	t	g	0.5641	0.0001	0.0046	0.9799	18,186	anxiety.meta.full.fs.tbl.gz
rs10005	1	230,416,953	a	g	0.5691	-0.0006	0.0051	0.9048	18,186	anxiety.meta.full.fs.tbl.gz
rs1000528	1	114,471,189	t	c	0.6996	-0.001	0.0072	0.8953	15,299	anxiety.meta.full.fs.tbl.gz
rs1000533	1	168,282,491	t	c	0.6227	-0.0017	0.0068	0.8009	15,299	anxiety.meta.full.fs.tbl.gz
rs1000543	1	244,187,600	a	g	0.5192	0.0026	0.0067	0.6936	15,299	anxiety.meta.full.fs.tbl.gz
rs1000606	1	93,772,193	t	c	0.1833	-0.0106	0.0058	0.06641	18,186	anxiety.meta.full.fs.tbl.gz
rs1000607	1	93,772,001	t	c	0.3347	-0.0068	0.0047	0.1512	18,186	anxiety.meta.full.fs.tbl.gz
rs1000730	1	231,963,601	t	c	0.3562	-0.015	0.0069	0.03078	15,299	anxiety.meta.full.fs.tbl.gz
rs1000731	1	231,963,491	t	c	0.2488	0.0044	0.0077	0.5654	15,299	anxiety.meta.full.fs.tbl.gz
rs1000792	1	100,040,100	a	g	0.8549	-0.008	0.0075	0.2868	18,186	anxiety.meta.full.fs.tbl.gz
rs1000796	1	217,402,330	a	g	0.3299	0.0033	0.0048	0.4873	18,186	anxiety.meta.full.fs.tbl.gz
rs1000836	1	237,834,407	a	g	0.2787	-0.0028	0.0117	0.8127	10,041	anxiety.meta.full.fs.tbl.gz
rs1000876	1	58,719,296	c	g	0.6501	0.0026	0.0047	0.5823	18,186	anxiety.meta.full.fs.tbl.gz
rs1000895	1	191,568,187	a	g	0.431	0.0045	0.0045	0.3223	18,186	anxiety.meta.full.fs.tbl.gz
rs1000947	1	112,277,597	t	c	0.6416	0.0042	0.0054	0.4338	18,186	anxiety.meta.full.fs.tbl.gz
rs1000997	1	16,125,961	a	g	0.724	-0.0034	0.0072	0.637	15,909	anxiety.meta.full.fs.tbl.gz
rs1001056	1	18,850,123	t	c	0.942	0.0269	0.0154	0.08057	2,887	anxiety.meta.full.fs.tbl.gz
rs1001070	1	78,518,432	a	t	0.9222	-0.0124	0.0087	0.1508	18,186	anxiety.meta.full.fs.tbl.gz
rs1001103	1	78,519,889	t	c	0.0826	0.0127	0.0084	0.1306	18,186	anxiety.meta.full.fs.tbl.gz
rs1001104	1	78,519,875	c	g	0.918	-0.0122	0.0084	0.1444	18,186	anxiety.meta.full.fs.tbl.gz
rs1001134	1	222,334,294	a	g	0.6473	-0.0042	0.0048	0.3778	18,186	anxiety.meta.full.fs.tbl.gz
rs1001135	1	222,334,181	t	c	0.3519	0.0042	0.0048	0.3738	18,186	anxiety.meta.full.fs.tbl.gz
rs1001136	1	222,334,134	a	g	0.342	-0.0019	0.0048	0.6916	18,186	anxiety.meta.full.fs.tbl.gz
rs1001149	1	152,508,562	t	c	0.0562	0.0178	0.0182	0.3274	10,996	anxiety.meta.full.fs.tbl.gz
rs1001160	1	76,358,591	a	c	0.7132	-0.0014	0.0074	0.8509	15,299	anxiety.meta.full.fs.tbl.gz
rs1001193	1	147,166,377	a	g	0.7776	0.006	0.0062	0.3265	18,186	anxiety.meta.full.fs.tbl.gz
rs1001207	1	23,749,148	a	g	0.806	0.0038	0.0057	0.501	18,186	anxiety.meta.full.fs.tbl.gz
rs1001247	1	246,275,020	a	t	0.1049	0.0013	0.0073	0.858	18,186	anxiety.meta.full.fs.tbl.gz
rs1001248	1	246,275,079	a	c	0.1041	0.0014	0.0074	0.8457	18,186	anxiety.meta.full.fs.tbl.gz
rs1001304	1	212,732,686	t	c	0.2178	-0.005	0.0058	0.3855	18,186	anxiety.meta.full.fs.tbl.gz
rs1001329	1	219,586,124	a	g	0.7737	-0.0056	0.0054	0.2949	18,186	anxiety.meta.full.fs.tbl.gz
rs1001360	1	164,713,318	a	g	0.328	0.0034	0.0049	0.4789	18,186	anxiety.meta.full.fs.tbl.gz
rs1001373	1	171,684,506	a	g	0.1976	-0.0047	0.0056	0.3974	18,186	anxiety.meta.full.fs.tbl.gz
rs1001400	1	40,998,902	a	g	0.8643	0.0011	0.0065	0.8629	18,186	anxiety.meta.full.fs.tbl.gz
rs1001402	1	209,682,786	a	g	0.8222	0.0046	0.0059	0.4374	18,186	anxiety.meta.full.fs.tbl.gz
rs1001403	1	182,365,995	c	g	0.2625	-0.0044	0.0051	0.3916	18,186	anxiety.meta.full.fs.tbl.gz
rs1001415	1	245,249,432	t	c	0.0686	0.005	0.0141	0.72	13,022	anxiety.meta.full.fs.tbl.gz
rs1001450	1	39,050,786	t	c	0.7739	0.0093	0.0089	0.2958	15,299	anxiety.meta.full.fs.tbl.gz
rs1001451	1	39,051,320	a	g	0.8151	-0.0022	0.0088	0.8061	15,909	anxiety.meta.full.fs.tbl.gz
rs1001494	1	113,110,619	t	c	0.5295	0.0021	0.0045	0.6336	18,186	anxiety.meta.full.fs.tbl.gz
rs1001511	1	53,549,041	a	g	0.0589	0.011	0.0172	0.5198	11,264	anxiety.meta.full.fs.tbl.gz
rs1001512	1	53,549,039	a	g	0.0591	0.0127	0.0171	0.4602	11,264	anxiety.meta.full.fs.tbl.gz
rs1001513	1	53,548,957	t	c	0.0585	0.0071	0.018	0.6933	10,109	anxiety.meta.full.fs.tbl.gz
rs1001567	1	9,194,614	t	g	0.5483	-0.0007	0.0048	0.8758	18,186	anxiety.meta.full.fs.tbl.gz
rs1001604	1	85,879,524	c	g	0.3621	0.0034	0.0047	0.4711	18,186	anxiety.meta.full.fs.tbl.gz
rs1001616	1	35,332,926	c	g	0.2841	-0.0121	0.0056	0.03205	18,186	anxiety.meta.full.fs.tbl.gz
rs1001620	1	2,746,066	c	g	0.3598	-0.0012	0.0057	0.8393	18,186	anxiety.meta.full.fs.tbl.gz
rs1001704	1	30,920,818	t	c	0.4127	-0.0014	0.0046	0.7654	18,186	anxiety.meta.full.fs.tbl.gz
rs1001709	1	30,359,862	a	g	0.3597	0.0017	0.0048	0.717	18,186	anxiety.meta.full.fs.tbl.gz
rs1001737	1	234,417,623	a	g	0.1655	-0.0027	0.0062	0.6661	18,186	anxiety.meta.full.fs.tbl.gz
rs1001834	1	152,495,940	a	c	0.6285	0.0038	0.0045	0.4068	18,186	anxiety.meta.full.fs.tbl.gz
rs1001840	1	59,481,532	a	g	0.4081	0.0019	0.0045	0.6755	18,186	anxiety.meta.full.fs.tbl.gz
rs1001847	1	89,847,153	a	g	0.1976	-0.006	0.0062	0.3339	18,186	anxiety.meta.full.fs.tbl.gz
rs1001848	1	155,047,379	a	c	0.5138	0.0058	0.0051	0.2557	18,186	anxiety.meta.full.fs.tbl.gz
rs1001880	1	37,144,802	t	c	0.6511	0.0006	0.0048	0.9029	18,186	anxiety.meta.full.fs.tbl.gz
rs10019	1	212,534,377	a	t	0.3887	0.0065	0.0046	0.1588	18,186	anxiety.meta.full.fs.tbl.gz
rs1001915	1	30,097,207	t	c	0.6456	-0.0016	0.0047	0.7338	18,186	anxiety.meta.full.fs.tbl.gz
rs1001925	1	42,027,561	t	c	0.2526	-0.0016	0.0052	0.7531	18,186	anxiety.meta.full.fs.tbl.gz
rs1001929	1	209,826,917	t	g	0.5396	-0.0034	0.005	0.4999	18,186	anxiety.meta.full.fs.tbl.gz
rs1001930	1	209,826,793	a	g	0.791	-0.0057	0.0063	0.3592	18,186	anxiety.meta.full.fs.tbl.gz
rs1002005	1	61,360,179	t	c	0.9216	0.024	0.0103	0.01965	18,186	anxiety.meta.full.fs.tbl.gz
rs1002017	1	29,654,540	a	g	0.8739	0.0017	0.007	0.8108	18,186	anxiety.meta.full.fs.tbl.gz
rs1002063	1	229,537,513	a	g	0.7323	0.0148	0.0078	0.05902	15,299	anxiety.meta.full.fs.tbl.gz
rs1002076	1	10,438,892	a	g	0.3207	0.0057	0.0049	0.2433	18,186	anxiety.meta.full.fs.tbl.gz
rs1002103	1	20,061,862	t	c	0.0995	0.0052	0.0113	0.6423	15,909	anxiety.meta.full.fs.tbl.gz
rs1002125	1	174,936,797	a	t	0.8733	0.0021	0.0073	0.7744	15,909	anxiety.meta.full.fs.tbl.gz
rs1002130	1	224,800,929	t	c	0.5588	-0.0003	0.0047	0.9416	18,186	anxiety.meta.full.fs.tbl.gz
rs1002131	1	224,800,901	t	c	0.8868	0.0029	0.007	0.6812	18,186	anxiety.meta.full.fs.tbl.gz
rs1002153	1	226,580,187	t	c	0.8239	-0.0058	0.0058	0.3254	18,186	anxiety.meta.full.fs.tbl.gz
rs1002160	1	166,097,758	t	c	0.164	0.0168	0.0089	0.05955	15,299	anxiety.meta.full.fs.tbl.gz
rs1002165	1	16,164,787	a	g	0.1073	0.0029	0.0072	0.6922	18,186	anxiety.meta.full.fs.tbl.gz
rs1002253	1	64,793,091	t	c	0.3869	0.0037	0.0046	0.4242	18,186	anxiety.meta.full.fs.tbl.gz
rs1002276	1	199,876,144	a	g	0.4502	-0.0073	0.0045	0.1009	18,186	anxiety.meta.full.fs.tbl.gz

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PGC Anxiety Disorder — GWAS Summary Statistics

Dataset Description

Genome-wide association study (GWAS) summary statistics for Anxiety Disorder phenotypes from the Psychiatric Genomics Consortium (PGC).

Each publication is available as a separate subset (config) and can be loaded independently.

Usage

from datasets import load_dataset

# Load a specific GWAS
ds = load_dataset("OpenMed/pgc-anxiety", "anx2016")
print(ds)

List all available subsets

from datasets import get_dataset_config_names
print(get_dataset_config_names("OpenMed/pgc-anxiety"))

Subsets

Config	Phenotype	Journal	Year	PubMed	Rows
`anx2016`	Anxiety Disorders & Factors	Molecular Psychiatry	2016	26754954	—
`anx2026`	Anxiety Disorders (Case-Control)	Nature Genetics	2026	39006447	—
`anx2026_GADsymptsQuant`	GAD Symptoms (Quantitative)	Nature Human Behaviour	2026	Pending	—
`panic2019`	Panic Disorder	Molecular Psychiatry	2019	31712720	—

Data Format

All data is stored as Apache Parquet shards (10,000 rows each). Common columns:

Column	Description
`SNP` / `ID`	SNP rsID or variant identifier
`CHR`	Chromosome
`BP` / `POS`	Base-pair position (typically GRCh37/hg19)
`A1`	Effect allele
`A2`	Non-effect allele
`OR` / `BETA`	Odds ratio or effect size
`SE`	Standard error
`P`	P-value
`_source_file`	Original source filename