Datasets:

OpenMed
/

pgc-autism

SNP string	CHR int64	BP int64	A1 string	A2 string	OR float64	SE float64	P float64	INFO float64	EUR_FRQ float64	_source_file string
rs3107975	1	55,326	T	C	1.07208	0.1342	0.604	0.469	0.990765	PGC.ASD.euro.all.25Mar2015.txt.gz
rs147589465	1	240,789	T	G	0.89199	0.1496	0.445	0.436	0.98681	PGC.ASD.euro.all.25Mar2015.txt.gz
rs60791385	1	526,970	T	C	0.8244	0.1711	0.2593	0.42	0.994723	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_532258_D	1	532,258	D	I	1.26099	0.1527	0.1288	0.437	0.01583	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_540540_D	1	540,540	I	D	0.85087	0.1836	0.3788	0.438	0.98549	PGC.ASD.euro.all.25Mar2015.txt.gz
rs185127847	1	645,605	A	T	0.85155	0.0909	0.07704	0.436	0.03958	PGC.ASD.euro.all.25Mar2015.txt.gz
rs61769339	1	662,622	A	G	0.98069	0.0636	0.7596	0.552	0.1055	PGC.ASD.euro.all.25Mar2015.txt.gz
rs150820983	1	676,127	T	C	0.9991	0.1341	0.9948	0.41	0.02243	PGC.ASD.euro.all.25Mar2015.txt.gz
rs190214723	1	693,625	T	C	1.06556	0.0979	0.5167	0.445	0.96042	PGC.ASD.euro.all.25Mar2015.txt.gz
rs61769350	1	693,731	A	G	1.0015	0.0568	0.9794	0.603	0.876	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_697411_I	1	697,411	I	D	0.94592	0.1321	0.674	0.507	0.01979	PGC.ASD.euro.all.25Mar2015.txt.gz
rs189800799	1	701,835	T	C	1.01471	0.1352	0.9141	0.459	0.96702	PGC.ASD.euro.all.25Mar2015.txt.gz
rs72631875	1	705,882	A	G	0.99372	0.0844	0.941	0.43	0.06464	PGC.ASD.euro.all.25Mar2015.txt.gz
rs55727773	1	706,368	A	G	1.0662	0.041	0.118	0.459	0.5805	PGC.ASD.euro.all.25Mar2015.txt.gz
rs115229562	1	707,886	C	G	1.08872	0.0865	0.3258	0.401	0.0686	PGC.ASD.euro.all.25Mar2015.txt.gz
rs28457007	1	712,930	T	C	0.96233	0.158	0.8081	0.417	0.9723	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_713131_I	1	713,131	I	D	0.97629	0.1252	0.8478	0.514	0.03034	PGC.ASD.euro.all.25Mar2015.txt.gz
rs114983708	1	714,019	A	G	1.02747	0.0958	0.7769	0.539	0.95778	PGC.ASD.euro.all.25Mar2015.txt.gz
rs141232927	1	714,310	C	G	1.13553	0.1727	0.462	0.437	0.98285	PGC.ASD.euro.all.25Mar2015.txt.gz
rs149887893	1	714,596	T	C	1.05033	0.1235	0.6908	0.484	0.97361	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12184267	1	715,265	T	C	0.98787	0.1011	0.9038	0.565	0.04485	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12184277	1	715,367	A	G	0.99382	0.1158	0.957	0.506	0.9591	PGC.ASD.euro.all.25Mar2015.txt.gz
rs149301622	1	716,041	A	G	1.0497	0.1218	0.6907	0.482	0.03826	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12184279	1	717,485	A	C	1.06237	0.1252	0.6289	0.482	0.03562	PGC.ASD.euro.all.25Mar2015.txt.gz
rs187772768	1	719,914	C	G	1.00552	0.1009	0.9563	0.563	0.95646	PGC.ASD.euro.all.25Mar2015.txt.gz
rs116801199	1	720,381	T	G	0.99183	0.1012	0.9356	0.551	0.03958	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_721104_D	1	721,104	I	D	1.0025	0.1199	0.9832	0.475	0.96702	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12565286	1	721,290	C	G	0.99481	0.0982	0.9575	0.556	0.04354	PGC.ASD.euro.all.25Mar2015.txt.gz
rs189147642	1	721,757	A	T	0.9984	0.1006	0.9871	0.57	0.04354	PGC.ASD.euro.all.25Mar2015.txt.gz
rs116030099	1	722,670	T	C	0.90765	0.0682	0.1556	0.446	0.8958	PGC.ASD.euro.all.25Mar2015.txt.gz
rs143583930	1	722,672	T	C	0.99581	0.113	0.9702	0.51	0.03166	PGC.ASD.euro.all.25Mar2015.txt.gz
rs28659788	1	723,307	C	G	0.97045	0.101	0.7663	0.552	0.96174	PGC.ASD.euro.all.25Mar2015.txt.gz
rs28375378	1	723,742	T	C	1.0031	0.1027	0.9758	0.544	0.96174	PGC.ASD.euro.all.25Mar2015.txt.gz
rs11804171	1	723,819	A	T	0.98787	0.0963	0.8989	0.529	0.04485	PGC.ASD.euro.all.25Mar2015.txt.gz
rs2977670	1	723,891	C	G	0.95047	0.0817	0.5337	0.521	0.94855	PGC.ASD.euro.all.25Mar2015.txt.gz
rs28454925	1	726,794	C	G	0.99601	0.1077	0.9704	0.537	0.95646	PGC.ASD.euro.all.25Mar2015.txt.gz
rs28641938	1	727,142	T	C	1.0028	0.1001	0.9779	0.567	0.95515	PGC.ASD.euro.all.25Mar2015.txt.gz
rs116587930	1	727,841	A	G	0.99601	0.0884	0.9642	0.543	0.05673	PGC.ASD.euro.all.25Mar2015.txt.gz
rs116720794	1	729,632	T	C	1.00341	0.1005	0.9731	0.566	0.04485	PGC.ASD.euro.all.25Mar2015.txt.gz
rs4951859	1	729,679	C	G	1.03521	0.0463	0.4549	0.637	0.1662	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_730049_I	1	730,049	I	D	1.0005	0.1457	0.9974	0.449	0.02375	PGC.ASD.euro.all.25Mar2015.txt.gz
rs148120343	1	730,087	T	C	1.00481	0.0883	0.9567	0.544	0.94327	PGC.ASD.euro.all.25Mar2015.txt.gz
rs186002080	1	731,453	A	G	0.94252	0.1539	0.7002	0.45	0.01451	PGC.ASD.euro.all.25Mar2015.txt.gz
rs142557973	1	731,718	T	C	0.99661	0.0517	0.9477	0.685	0.876	PGC.ASD.euro.all.25Mar2015.txt.gz
rs144022023	1	732,801	A	G	0.98531	0.1416	0.9166	0.435	0.98021	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12131618	1	732,809	T	C	0.98275	0.0759	0.8189	0.586	0.94195	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_733581_D	1	733,581	I	D	0.9803	0.1329	0.8812	0.435	0.9723	PGC.ASD.euro.all.25Mar2015.txt.gz
rs146623218	1	734,340	A	G	1.02306	0.1547	0.8829	0.448	0.01319	PGC.ASD.euro.all.25Mar2015.txt.gz
rs141242758	1	734,349	T	C	0.9861	0.0522	0.7877	0.686	0.8786	PGC.ASD.euro.all.25Mar2015.txt.gz
rs192840627	1	734,422	A	G	0.9975	0.1051	0.9813	0.546	0.04222	PGC.ASD.euro.all.25Mar2015.txt.gz
rs2427928	1	735,068	A	G	0.84265	0.2079	0.4103	0.477	0.994723	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12405651	1	735,985	A	G	0.92914	0.1113	0.5093	0.446	0.03298	PGC.ASD.euro.all.25Mar2015.txt.gz
rs147133636	1	736,186	A	G	1.26985	0.1905	0.2097	0.411	0.007916	PGC.ASD.euro.all.25Mar2015.txt.gz
rs79010578	1	736,289	A	T	1.0145	0.0529	0.7858	0.619	0.1425	PGC.ASD.euro.all.25Mar2015.txt.gz
rs10454457	1	736,736	A	G	0.95552	0.1152	0.6927	0.54	0.9657	PGC.ASD.euro.all.25Mar2015.txt.gz
rs4040696	1	737,059	A	G	1.05064	0.115	0.6679	0.516	0.96042	PGC.ASD.euro.all.25Mar2015.txt.gz
rs10454458	1	737,085	T	C	0.95171	0.1151	0.667	0.517	0.03958	PGC.ASD.euro.all.25Mar2015.txt.gz
rs145807359	1	738,214	T	C	1.04102	0.11	0.715	0.484	0.04222	PGC.ASD.euro.all.25Mar2015.txt.gz
rs3094317	1	739,528	A	G	1.00934	0.0746	0.9007	0.452	0.90106	PGC.ASD.euro.all.25Mar2015.txt.gz
rs193160839	1	740,285	A	G	1.05739	0.1116	0.6172	0.528	0.03958	PGC.ASD.euro.all.25Mar2015.txt.gz
rs142453219	1	741,397	A	G	0.85189	0.1747	0.3586	0.402	0.98681	PGC.ASD.euro.all.25Mar2015.txt.gz
rs150613421	1	741,850	T	C	1.03562	0.1372	0.7985	0.4	0.02507	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_745642_D	1	745,642	I	D	1.05696	0.1852	0.7648	0.418	0.98153	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_746211_I	1	746,211	I	D	0.9686	0.1062	0.7642	0.571	0.03826	PGC.ASD.euro.all.25Mar2015.txt.gz
rs2722511	1	746,350	A	G	0.92849	0.1439	0.6061	0.415	0.9657	PGC.ASD.euro.all.25Mar2015.txt.gz
rs144595511	1	746,727	A	G	0.97424	0.1056	0.8045	0.572	0.03958	PGC.ASD.euro.all.25Mar2015.txt.gz
rs190225900	1	746,775	A	G	0.94111	0.1516	0.689	0.412	0.96966	PGC.ASD.euro.all.25Mar2015.txt.gz
rs146703036	1	746,892	A	G	1.07832	0.1608	0.6392	0.418	0.02902	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_747753_D	1	747,753	D	I	1.00773	0.1216	0.9497	0.515	0.02902	PGC.ASD.euro.all.25Mar2015.txt.gz
rs192014339	1	748,462	C	G	1.03118	0.2173	0.8876	0.409	0.02507	PGC.ASD.euro.all.25Mar2015.txt.gz
rs184255501	1	748,487	T	C	0.88373	0.1487	0.4061	0.445	0.98945	PGC.ASD.euro.all.25Mar2015.txt.gz
rs143214544	1	748,878	T	G	0.95925	0.0434	0.3384	0.602	0.7704	PGC.ASD.euro.all.25Mar2015.txt.gz
rs184314894	1	750,084	A	G	0.97142	0.094	0.7578	0.434	0.04881	PGC.ASD.euro.all.25Mar2015.txt.gz
rs182014371	1	750,675	A	G	1.07929	0.1065	0.4734	0.406	0.05937	PGC.ASD.euro.all.25Mar2015.txt.gz
rs141709959	1	751,456	T	C	1.02552	0.1062	0.8123	0.574	0.96306	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_751701_I	1	751,701	I	D	1.12098	0.1394	0.4126	0.412	0.02902	PGC.ASD.euro.all.25Mar2015.txt.gz
rs143225517	1	751,756	T	C	0.97239	0.0444	0.5283	0.83	0.8694	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12090487	1	752,242	A	T	1.07251	0.2239	0.7545	0.522	0.001319	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_752307_D	1	752,307	I	D	1.02953	0.104	0.7794	0.583	0.96174	PGC.ASD.euro.all.25Mar2015.txt.gz
rs146277091	1	752,478	A	G	0.97113	0.1041	0.7785	0.583	0.03826	PGC.ASD.euro.all.25Mar2015.txt.gz
rs3094315	1	752,566	A	G	0.99025	0.041	0.8113	0.823	0.8364	PGC.ASD.euro.all.25Mar2015.txt.gz
rs149886465	1	752,617	A	C	0.97317	0.1033	0.7923	0.577	0.0409	PGC.ASD.euro.all.25Mar2015.txt.gz
rs3131972	1	752,721	A	G	1.01167	0.0403	0.7739	0.813	0.1675	PGC.ASD.euro.all.25Mar2015.txt.gz
rs148649543	1	752,796	T	C	0.92155	0.0994	0.4114	0.579	0.04485	PGC.ASD.euro.all.25Mar2015.txt.gz
rs3131971	1	752,894	T	C	0.98432	0.0408	0.6989	0.743	0.2045	PGC.ASD.euro.all.25Mar2015.txt.gz
rs61770173	1	753,405	A	C	0.98177	0.0433	0.6708	0.808	0.8575	PGC.ASD.euro.all.25Mar2015.txt.gz
rs2073814	1	753,474	C	G	1.00531	0.0402	0.8952	0.768	0.1741	PGC.ASD.euro.all.25Mar2015.txt.gz
rs2073813	1	753,541	A	G	1.02573	0.0433	0.557	0.816	0.1332	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_753844_D	1	753,844	D	I	0.99681	0.0672	0.9615	0.406	0.1412	PGC.ASD.euro.all.25Mar2015.txt.gz
chr1_753848_D	1	753,848	I	D	0.97356	0.0688	0.6968	0.411	0.8707	PGC.ASD.euro.all.25Mar2015.txt.gz
rs58324164	1	753,849	T	G	1.00331	0.061	0.9565	0.411	0.1623	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12184312	1	754,063	T	G	0.94252	0.1006	0.5561	0.581	0.04485	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12184325	1	754,105	T	C	0.94242	0.1006	0.5555	0.581	0.04485	PGC.ASD.euro.all.25Mar2015.txt.gz
rs3131969	1	754,182	A	G	1.02122	0.0429	0.6249	0.821	0.1332	PGC.ASD.euro.all.25Mar2015.txt.gz
rs3131968	1	754,192	A	G	1.02081	0.0429	0.6307	0.821	0.1346	PGC.ASD.euro.all.25Mar2015.txt.gz
rs12184313	1	754,211	A	G	0.94233	0.1006	0.5546	0.581	0.04485	PGC.ASD.euro.all.25Mar2015.txt.gz
rs3131967	1	754,334	T	C	1.00844	0.0426	0.8445	0.782	0.1623	PGC.ASD.euro.all.25Mar2015.txt.gz
rs3115859	1	754,503	A	G	0.98946	0.0405	0.793	0.808	0.8311	PGC.ASD.euro.all.25Mar2015.txt.gz
rs10454459	1	754,629	A	G	1.06109	0.1006	0.5554	0.581	0.95515	PGC.ASD.euro.all.25Mar2015.txt.gz
rs10454454	1	754,954	A	G	0.96696	0.119	0.7773	0.531	0.0343	PGC.ASD.euro.all.25Mar2015.txt.gz

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PGC Autism Spectrum Disorder — GWAS Summary Statistics

Dataset Description

Genome-wide association study (GWAS) summary statistics for Autism Spectrum Disorder phenotypes from the Psychiatric Genomics Consortium (PGC).

Each publication is available as a separate subset (config) and can be loaded independently.

Usage

from datasets import load_dataset

# Load a specific GWAS
ds = load_dataset("OpenMed/pgc-autism", "asd2017")
print(ds)

List all available subsets

from datasets import get_dataset_config_names
print(get_dataset_config_names("OpenMed/pgc-autism"))

Subsets

Config	Phenotype	Journal	Year	PubMed	Rows
`asd2017`	Autism Spectrum Disorder	Molecular Autism	2017	28540026	—
`asd2019`	Autism Spectrum Disorder	Nature Genetics	2019	30804558	—

Data Format

All data is stored as Apache Parquet shards (10,000 rows each). Common columns:

Column	Description
`SNP` / `ID`	SNP rsID or variant identifier
`CHR`	Chromosome
`BP` / `POS`	Base-pair position (typically GRCh37/hg19)
`A1`	Effect allele
`A2`	Non-effect allele
`OR` / `BETA`	Odds ratio or effect size
`SE`	Standard error
`P`	P-value
`_source_file`	Original source filename