PGC Psychiatric GWAS Summary Statistics
Collection
~1 billion rows of genome-wide association study (GWAS) summary statistics from the Psychiatric Genomics Consortium (PGC). • 12 items • Updated • 9
Datasets:
CHR int64 1 22 | SNP stringlengths 3 23 | BP int64 828 249M | A1 stringlengths 1 17 | A2 stringlengths 1 17 | INFO float64 0.6 2 | OR float64 0 10,213,711,400,829,107,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000,000B | SE float64 0.03 3.93k | P float64 0 1 | ngt int64 0 12 | _source_file stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|
1 | chr1:100012367 | 100,012,367 | T | C | 0.842 | 3.84164 | 1.5 | 0.3694 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100020280 | 100,020,280 | T | C | 0.668 | 0.0029 | 4.48 | 0.1922 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100023954 | 100,023,954 | C | G | 0.748 | 3.1893 | 1.443 | 0.4216 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100035002 | 100,035,002 | G | GT | 0.755 | 3.4886 | 1.918 | 0.5147 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100045607 | 100,045,607 | A | G | 0.772 | 5.40541 | 2.236 | 0.4505 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100048109 | 100,048,109 | GA | G | 0.989 | 1.02716 | 0.0305 | 0.3797 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100048114 | 100,048,114 | GAAAA | G | 0.989 | 1.02716 | 0.0305 | 0.3797 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100070545 | 100,070,545 | A | G | 0.702 | 0.28309 | 3.9 | 0.7463 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100081878 | 100,081,878 | T | C | 0.678 | 0.4012 | 1.78 | 0.6079 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100082759 | 100,082,759 | T | C | 0.706 | 7,889.59436 | 7.698 | 0.2438 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100088185 | 100,088,185 | T | C | 1.2 | 0.5631 | 0.9017 | 0.5241 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100089109 | 100,089,109 | T | C | 0.871 | 0.74252 | 1.085 | 0.7838 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100091597 | 100,091,597 | T | G | 0.783 | 1.11527 | 0.1773 | 0.5385 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100093021 | 100,093,021 | CAAG | C | 0.741 | 0.75292 | 0.1664 | 0.08811 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100095447 | 100,095,447 | C | CAAAAAAAAA | 0.768 | 0.84934 | 0.1217 | 0.1797 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:10011146 | 10,011,146 | C | CA | 0.688 | 0.97492 | 0.0622 | 0.6827 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100118050 | 100,118,050 | T | C | 0.693 | 0.0519 | 3.963 | 0.4553 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100121550 | 100,121,550 | T | C | 0.622 | 2.26687 | 2.79 | 0.7693 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100121816 | 100,121,816 | A | AT | 0.752 | 1.15928 | 0.1425 | 0.2996 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100124056 | 100,124,056 | A | G | 0.708 | 0.31239 | 1.825 | 0.5237 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100125974 | 100,125,974 | A | T | 0.927 | 0.87529 | 1.666 | 0.9363 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100126636 | 100,126,636 | A | C | 0.992 | 0.1082 | 1.178 | 0.05904 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100130215 | 100,130,215 | A | G | 0.961 | 0.78939 | 0.7942 | 0.7659 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100131299 | 100,131,299 | T | TG | 0.959 | 1.23924 | 1.669 | 0.8978 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:10013336 | 10,013,336 | C | CT | 0.855 | 0.95829 | 0.0556 | 0.4431 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100137190 | 100,137,190 | A | G | 0.959 | 0.80703 | 1.669 | 0.8978 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100140938 | 100,140,938 | A | T | 0.959 | 1.23924 | 1.669 | 0.8978 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100146712 | 100,146,712 | T | G | 0.889 | 0.62582 | 1.121 | 0.6759 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100148559 | 100,148,559 | CTCCAAAAAGAAA+12 | CGAAAGAAGGAAA+4 | 0.799 | 1.03749 | 0.1643 | 0.8227 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100148676 | 100,148,676 | A | G | 0.805 | 0.89601 | 0.1421 | 0.4399 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100148700 | 100,148,700 | A | G | 0.837 | 1.08394 | 0.1389 | 0.562 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100149528 | 100,149,528 | A | T | 0.926 | 1.35825 | 1.667 | 0.8543 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100154054 | 100,154,054 | T | C | 0.615 | 0.0591 | 1.389 | 0.04168 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100169079 | 100,169,079 | T | C | 0.81 | 38,143.09407 | 17.26 | 0.541 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100177167 | 100,177,167 | T | C | 0.852 | 624.28063 | 8.26 | 0.4358 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100184963 | 100,184,963 | C | CA | 0.645 | 0.98305 | 0.0382 | 0.6547 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100209631 | 100,209,631 | A | AAAAG | 0.977 | 1.04613 | 0.0563 | 0.4237 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100210525 | 100,210,525 | CAAAAAAAAAAAA | C | 0.607 | 1.01603 | 0.0746 | 0.8311 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100214768 | 100,214,768 | A | T | 0.958 | 1.23776 | 1.669 | 0.8983 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100214850 | 100,214,850 | A | G | 0.992 | 0.1082 | 1.178 | 0.05904 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100220061 | 100,220,061 | A | G | 0.659 | 1.03759 | 0.0591 | 0.5329 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100222636 | 100,222,636 | CTT | CT | 0.601 | 0.9759 | 0.0619 | 0.6934 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100234804 | 100,234,804 | TAA | TA | 0.999 | 1.0498 | 0.0335 | 0.1464 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100252542 | 100,252,542 | C | G | 0.906 | 0.52582 | 0.6381 | 0.3137 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100254967 | 100,254,967 | T | G | 0.808 | 1.83437 | 1.404 | 0.6657 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:10025699 | 10,025,699 | A | G | 0.712 | 0.38639 | 1.367 | 0.4868 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100261513 | 100,261,513 | A | ATATATATATG | 0.904 | 0.97434 | 0.0337 | 0.4408 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100271022 | 100,271,022 | A | C | 0.655 | 2.17711 | 1.745 | 0.6557 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100272549 | 100,272,549 | C | G | 0.988 | 9.26552 | 1.179 | 0.05891 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100275518 | 100,275,518 | CTT | C | 0.961 | 1.06418 | 0.0439 | 0.1559 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100286977 | 100,286,977 | A | AAAAAAAAAAAG | 1.01 | 1.01979 | 0.0314 | 0.5315 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100289165 | 100,289,165 | T | C | 0.746 | 1.34232 | 0.1395 | 0.0348 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100289318 | 100,289,318 | A | G | 0.716 | 0.64108 | 0.8762 | 0.6118 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100289361 | 100,289,361 | A | G | 0.983 | 1.02224 | 0.1188 | 0.8528 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100289362 | 100,289,362 | T | C | 0.997 | 1.00541 | 0.1193 | 0.9636 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100289365 | 100,289,365 | A | G | 0.996 | 0.96368 | 0.0434 | 0.3931 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100289442 | 100,289,442 | T | C | 0.992 | 0.93548 | 0.0964 | 0.489 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100292576 | 100,292,576 | A | G | 0.916 | 1.06492 | 0.092 | 0.4939 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100292580 | 100,292,580 | C | G | 0.922 | 1.05527 | 0.0919 | 0.5585 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100298988 | 100,298,988 | A | G | 0.993 | 0.95849 | 0.0725 | 0.559 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100298994 | 100,298,994 | A | G | 0.996 | 0.98226 | 0.1077 | 0.8682 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100299500 | 100,299,500 | T | C | 0.718 | 0.31591 | 1.499 | 0.442 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100317907 | 100,317,907 | CTT | C | 0.998 | 1.03169 | 0.0308 | 0.3111 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100320639 | 100,320,639 | T | C | 0.769 | 0.32979 | 1.943 | 0.5681 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100320890 | 100,320,890 | C | CCCTCATATTTCT+21 | 1 | 1.00975 | 0.1078 | 0.9284 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100322977 | 100,322,977 | A | G | 0.884 | 1.08752 | 0.1518 | 0.5806 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100323116 | 100,323,116 | A | G | 1 | 1.00944 | 0.1078 | 0.9303 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100323124 | 100,323,124 | A | G | 0.983 | 1.03345 | 0.1484 | 0.8248 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100323151 | 100,323,151 | A | C | 0.972 | 0.93174 | 0.1227 | 0.5643 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100323423m | 100,323,423 | C | CTCTTT | 1 | 1.00944 | 0.1078 | 0.9306 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100327472 | 100,327,472 | A | T | 0.909 | 0.4548 | 0.5677 | 0.1652 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100338989 | 100,338,989 | C | CT | 0.72 | 1.02922 | 0.0599 | 0.6304 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100355898 | 100,355,898 | CCAGGGCATATG | C | 0.935 | 0.8795 | 0.0819 | 0.1169 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100355912 | 100,355,912 | G | GAATATTATTTTA+2 | 0.911 | 1.11516 | 0.0851 | 0.2002 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100355940 | 100,355,940 | A | <INS:ME:ALU> | 0.861 | 0.8316 | 0.0931 | 0.04751 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100360666 | 100,360,666 | A | G | 0.709 | 0.0028 | 5.419 | 0.278 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:10036344 | 10,036,344 | C | CA | 0.811 | 0.9538 | 0.0645 | 0.4631 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100365082 | 100,365,082 | CTT | C | 0.968 | 1.00753 | 0.0295 | 0.8 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100365085 | 100,365,085 | TC | T | 0.968 | 1.00753 | 0.0295 | 0.8 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100365086 | 100,365,086 | TC | T | 0.968 | 1.00753 | 0.0295 | 0.8 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100366446mmm | 100,366,446 | GTTT | GT | 0.898 | 1.02696 | 0.0306 | 0.386 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100369937 | 100,369,937 | T | TAC | 0.854 | 0.33028 | 1.33 | 0.4048 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100390702 | 100,390,702 | A | G | 0.892 | 1.5968 | 0.7543 | 0.535 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100390704 | 100,390,704 | A | T | 0.892 | 0.62619 | 0.7544 | 0.5349 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100390706 | 100,390,706 | T | C | 0.892 | 0.62619 | 0.7544 | 0.5349 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100392340 | 100,392,340 | C | G | 0.67 | 143.60981 | 4.901 | 0.3109 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100399394 | 100,399,394 | A | G | 0.992 | 0.97239 | 0.1235 | 0.8208 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100410787 | 100,410,787 | A | AAGCAGGGGTAAT+3 | 0.897 | 1.13655 | 1.451 | 0.9297 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100411503 | 100,411,503 | T | C | 0.904 | 0.40681 | 1.303 | 0.4901 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100413051 | 100,413,051 | T | TAG | 0.98 | 1.086 | 0.0753 | 0.2733 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100426209 | 100,426,209 | C | G | 0.999 | 1.06641 | 0.0703 | 0.3597 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100437065 | 100,437,065 | A | G | 1.01 | 1.05961 | 0.1244 | 0.6418 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100437815 | 100,437,815 | T | G | 0.9 | 0.7966 | 0.7901 | 0.7735 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100447909 | 100,447,909 | A | G | 0.986 | 9.31196 | 1.184 | 0.05956 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100452709 | 100,452,709 | T | G | 0.622 | 1.14809 | 0.104 | 0.1843 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100454833 | 100,454,833 | TTTTTG | T | 0.9 | 1.02224 | 0.1037 | 0.8322 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100459894 | 100,459,894 | CTTTTATCTAAAA+13 | C | 0.973 | 0.93707 | 0.0688 | 0.3451 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100462722 | 100,462,722 | A | G | 0.759 | 9.30359 | 1.941 | 0.2505 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100466285 | 100,466,285 | T | C | 0.768 | 9.48394 | 1.947 | 0.2479 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
1 | chr1:100466729 | 100,466,729 | T | C | 0.986 | 9.31196 | 1.184 | 0.05956 | 0 | pgc.ed.freeze1.summarystatistics.July2017.txt.gz |
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PGC Eating Disorders — GWAS Summary Statistics
Dataset Description
Genome-wide association study (GWAS) summary statistics for Eating Disorders phenotypes from the Psychiatric Genomics Consortium (PGC).
Each publication is available as a separate subset (config) and can be loaded independently.
Usage
from datasets import load_dataset
# Load a specific GWAS
ds = load_dataset("OpenMed/pgc-eating-disorders", "an2017")
print(ds)
List all available subsets
from datasets import get_dataset_config_names
print(get_dataset_config_names("OpenMed/pgc-eating-disorders"))
Subsets
| Config | Phenotype | Journal | Year | PubMed | Rows |
|---|---|---|---|---|---|
an2017 |
Anorexia Nervosa | American Journal of Psychiatry | 2017 | 28494655 | — |
an2019 |
Anorexia Nervosa | Nature Genetics | 2019 | 31308545 | — |
Data Format
All data is stored as Apache Parquet shards (10,000 rows each). Common columns:
| Column | Description |
|---|---|
SNP / ID |
SNP rsID or variant identifier |
CHR |
Chromosome |
BP / POS |
Base-pair position (typically GRCh37/hg19) |
A1 |
Effect allele |
A2 |
Non-effect allele |
OR / BETA |
Odds ratio or effect size |
SE |
Standard error |
P |
P-value |
_source_file |
Original source filename |
Column names vary between publications. Check each subset's schema.
Citation
Please cite the original publication (see PubMed links above) and acknowledge the PGC:
Data were obtained from the Psychiatric Genomics Consortium — https://pgc.unc.edu/
Terms of Use
Released under CC BY 4.0.
- Cite the original publication(s)
- Do not attempt to re-identify individual participants
- Comply with the PGC data use policies
Source
Last updated: April 2026
- Downloads last month
- 8
Size of downloaded dataset files:
317 MB
Size of the auto-converted Parquet files:
317 MB
Number of rows:
10,641,289