Download manifests/0b/github.com__piercelab__tcrmodel2.json from OpenScientificCodeRegistry/Database: direct link, hf CLI and curl.
- Browser
- Download file 22.3 kB
-
https://huggingface.co/datasets/OpenScientificCodeRegistry/Database/resolve/main/manifests/0b/github.com__piercelab__tcrmodel2.json
- Command line
-
hf download hf://datasets/OpenScientificCodeRegistry/Database/manifests/0b/github.com__piercelab__tcrmodel2.json
-
curl -L -o github.com__piercelab__tcrmodel2.json https://huggingface.co/datasets/OpenScientificCodeRegistry/Database/resolve/main/manifests/0b/github.com__piercelab__tcrmodel2.json
22.3 kB
| { | |
| "format": "oscr-script-manifest/1", | |
| "repository": "github.com/piercelab/tcrmodel2", | |
| "url": "https://github.com/piercelab/tcrmodel2", | |
| "host": "github.com", | |
| "commit": "90536deaf766fe169f51679ce9456f3b165be5c9", | |
| "license": "Apache-2.0", | |
| "license_confirmed_by": "license file LICENSE", | |
| "redistribution": "yes", | |
| "files": [ | |
| { | |
| "path": "LICENSE", | |
| "sha256": "c71d239df91726fc519c6eb72d318ec65820627232b2f796219e87dcf35d0ab4", | |
| "language": "License", | |
| "lines": 201, | |
| "truncated": false, | |
| "block": 1, | |
| "row": 2216 | |
| }, | |
| { | |
| "path": "README.md", | |
| "sha256": "4e6ebca086fe79aee992ff53151d4a605d53e874e844a9038bc983f175c6d1c7", | |
| "language": "Text", | |
| "lines": 195, | |
| "truncated": false, | |
| "block": 4, | |
| "row": 2679 | |
| }, | |
| { | |
| "path": "alphafold/__init__.py", | |
| "sha256": "81d285f77e444308aaf387bf06ecbbf7ccca4461d62db3e9ad9fe462393e5d82", | |
| "language": "Python", | |
| "lines": 14, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18569 | |
| }, | |
| { | |
| "path": "alphafold/common/__init__.py", | |
| "sha256": "144c001f817a11c018cb618354e7fb67e52cd76d01b74667b02fc0657a5874e7", | |
| "language": "Python", | |
| "lines": 14, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18556 | |
| }, | |
| { | |
| "path": "alphafold/common/confidence.py", | |
| "sha256": "f2bbcae52103e5e4b0534f152696c1ab236b2564636d16b6822f3dffb439db1b", | |
| "language": "Python", | |
| "lines": 168, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 23601 | |
| }, | |
| { | |
| "path": "alphafold/common/protein.py", | |
| "sha256": "7c54f8a337ebb0a5a3765f77179b7d86c71ec89d9153272320cd9384b1c66916", | |
| "language": "Python", | |
| "lines": 278, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25326 | |
| }, | |
| { | |
| "path": "alphafold/common/protein_test.py", | |
| "sha256": "bdee53a00b176562e69ce5ede58f4c4f7ac9804177a1ecf86af26a3b0903dc77", | |
| "language": "Python", | |
| "lines": 114, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22651 | |
| }, | |
| { | |
| "path": "alphafold/common/residue_constants.py", | |
| "sha256": "918cb2720fe681dcc432b072117e79d38f3a486c131133a2053d295f9ebcab91", | |
| "language": "Python", | |
| "lines": 897, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27737 | |
| }, | |
| { | |
| "path": "alphafold/common/residue_constants_test.py", | |
| "sha256": "4bbf7bb02ee3d8b4555fea852a6867d26c9d825dbe26e90ce12bcdf3388a6fca", | |
| "language": "Python", | |
| "lines": 190, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25063 | |
| }, | |
| { | |
| "path": "alphafold/data/__init__.py", | |
| "sha256": "9fbad6d49a22e5687eba7f57058bbbbe75f6248997ca51f83cceb6071db65b1d", | |
| "language": "Python", | |
| "lines": 14, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18535 | |
| }, | |
| { | |
| "path": "alphafold/data/custom_templates.py", | |
| "sha256": "4a8b4f464d4bb0f21cb3f69d20ef99e5fa84accf401d68222c176d2b57ceb05f", | |
| "language": "Python", | |
| "lines": 228, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25115 | |
| }, | |
| { | |
| "path": "alphafold/data/feature_processing.py", | |
| "sha256": "9969c151ecfcfa4eb814b46e5f63a91870fef2a283d59b7bd25ad3fb4173e62a", | |
| "language": "Python", | |
| "lines": 228, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 24799 | |
| }, | |
| { | |
| "path": "alphafold/data/mmcif_parsing.py", | |
| "sha256": "82c945e75d731c8fce6d1063d88e643056f0c50979cf497f9ef45acef73e5198", | |
| "language": "Python", | |
| "lines": 386, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 26319 | |
| }, | |
| { | |
| "path": "alphafold/data/msa_identifiers.py", | |
| "sha256": "764d0267cbf37ca6b5f6c9f257c4f96c592df51636c0aef5d64478780daee7d8", | |
| "language": "Python", | |
| "lines": 90, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 21215 | |
| }, | |
| { | |
| "path": "alphafold/data/msa_pairing.py", | |
| "sha256": "4aa570a7d2153d1cf7530872d63089b65d49a1a4b5d18017ae48424dddc6f72c", | |
| "language": "Python", | |
| "lines": 461, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 26745 | |
| }, | |
| { | |
| "path": "alphafold/data/parsers.py", | |
| "sha256": "8ff1130f6ee83bb5965591fe56b0024765ea6ed6b00265cef3f76aeb2e43f781", | |
| "language": "Python", | |
| "lines": 637, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27215 | |
| }, | |
| { | |
| "path": "alphafold/data/pipeline.py", | |
| "sha256": "885c6e97f2dc6943bff9b79e612d099505b314d7a6550a1896f4d85781adf948", | |
| "language": "Python", | |
| "lines": 271, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25820 | |
| }, | |
| { | |
| "path": "alphafold/data/pipeline_custom_templates.py", | |
| "sha256": "3116d57c22bae9528a598a1fdfd20f4f93fdeb2abd4d2f067fccde6c821102df", | |
| "language": "Python", | |
| "lines": 443, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 26999 | |
| }, | |
| { | |
| "path": "alphafold/data/pipeline_multimer.py", | |
| "sha256": "7ba05cc2d7a966d5102ad66fe1efd61dff0a3bd52dcb9a9e1cb073f14157d816", | |
| "language": "Python", | |
| "lines": 296, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25812 | |
| }, | |
| { | |
| "path": "alphafold/data/pipeline_multimer_custom_templates.py", | |
| "sha256": "a5ee6a47f8ec9cefc158f46ad0898fe19673e7277f318e48bfe29a1de42dd6a7", | |
| "language": "Python", | |
| "lines": 378, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 26492 | |
| }, | |
| { | |
| "path": "alphafold/data/templates.py", | |
| "sha256": "43569ae1868bb45f083c20d87cd443b1d0e865ea61f2c8677050a75996f61842", | |
| "language": "Python", | |
| "lines": 1010, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27845 | |
| }, | |
| { | |
| "path": "alphafold/data/tools/__init__.py", | |
| "sha256": "99b6dc388add0ed76fba35e40cf36a64f17e88f5b830dd7eaee48853c92f4c31", | |
| "language": "Python", | |
| "lines": 14, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18544 | |
| }, | |
| { | |
| "path": "alphafold/data/tools/hhblits.py", | |
| "sha256": "d1d4caed52fe9fe061d015ef3c2b29521b716894b07e28dac3c7d27e6d42c7fe", | |
| "language": "Python", | |
| "lines": 155, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 23293 | |
| }, | |
| { | |
| "path": "alphafold/data/tools/hhsearch.py", | |
| "sha256": "716235ef6382b1647355bebfdce125e3574262b42fd2ac5a0f3c71b0c211ab3e", | |
| "language": "Python", | |
| "lines": 107, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 21814 | |
| }, | |
| { | |
| "path": "alphafold/data/tools/hmmbuild.py", | |
| "sha256": "2e72d4e5e41eb58aee141f4e007b33b1ed5c4c1ad2c7cda1e9d175ca1a56efc3", | |
| "language": "Python", | |
| "lines": 138, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22635 | |
| }, | |
| { | |
| "path": "alphafold/data/tools/hmmsearch.py", | |
| "sha256": "5f5504b40b95a87f059346d1da0131980e1abd5e576338fb673f400b6d8151c5", | |
| "language": "Python", | |
| "lines": 131, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22624 | |
| }, | |
| { | |
| "path": "alphafold/data/tools/jackhmmer.py", | |
| "sha256": "5d5fcffa2cf28fc42bf50dff556c2d540858b1a8c811ecd980e38dce9c759f8c", | |
| "language": "Python", | |
| "lines": 221, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 24718 | |
| }, | |
| { | |
| "path": "alphafold/data/tools/kalign.py", | |
| "sha256": "62b03ea317bfe63f33812a3cfed44f9cc3271a233022e6549055437fa8f9caa9", | |
| "language": "Python", | |
| "lines": 104, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 21639 | |
| }, | |
| { | |
| "path": "alphafold/data/tools/utils.py", | |
| "sha256": "e64ec392a2be1c706afee0eee41cfbe39c2b7fa1dad864c364fbe3be3689cfdc", | |
| "language": "Python", | |
| "lines": 40, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19245 | |
| }, | |
| { | |
| "path": "alphafold/model/__init__.py", | |
| "sha256": "a237ba59c7c0a012e927739e8b3e984b283f696af466dddab2d920c3aac087be", | |
| "language": "Python", | |
| "lines": 14, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18510 | |
| }, | |
| { | |
| "path": "alphafold/model/all_atom.py", | |
| "sha256": "ec1a2df861a872e6319c714c92cd82d1e7954054062699176ce2f0416d8d03c9", | |
| "language": "Python", | |
| "lines": 1141, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27930 | |
| }, | |
| { | |
| "path": "alphafold/model/all_atom_multimer.py", | |
| "sha256": "657e22c3ee914e0e573c390d8d6ffbf14a763968e739b1756047841ca58e6ec4", | |
| "language": "Python", | |
| "lines": 968, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27832 | |
| }, | |
| { | |
| "path": "alphafold/model/all_atom_test.py", | |
| "sha256": "972917f797fc47d4b8dbf6e921b951e18aa05e0685c327ec6f31b802065c3880", | |
| "language": "Python", | |
| "lines": 135, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22718 | |
| }, | |
| { | |
| "path": "alphafold/model/common_modules.py", | |
| "sha256": "bd4ed661d9dcd67b3f0bbbc96c641142daa793364dac08e9bb320d3c86c87eec", | |
| "language": "Python", | |
| "lines": 191, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 23549 | |
| }, | |
| { | |
| "path": "alphafold/model/config.py", | |
| "sha256": "7b53395e6e936f8f62f5ffa9e88fcb089f9ef96c156835cfbb49b5d2f94f1534", | |
| "language": "Python", | |
| "lines": 699, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27455 | |
| }, | |
| { | |
| "path": "alphafold/model/data.py", | |
| "sha256": "893b1f013be9f1dbcaf84d0ea9e73268d6a0356b6f8523f818761632630c2673", | |
| "language": "Python", | |
| "lines": 33, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19102 | |
| }, | |
| { | |
| "path": "alphafold/model/features.py", | |
| "sha256": "5e37237d357c38d42e5ea273a966ee39d8d58cf4f28424c6fd62eed76ffe8def", | |
| "language": "Python", | |
| "lines": 104, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 21896 | |
| }, | |
| { | |
| "path": "alphafold/model/folding.py", | |
| "sha256": "71bafd2f98676b9f231a73d0d4b42d7e93969d1d25611d7a69fb742832318ff7", | |
| "language": "Python", | |
| "lines": 1009, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27778 | |
| }, | |
| { | |
| "path": "alphafold/model/folding_multimer.py", | |
| "sha256": "12b59ff5ab31cd95b0e817bc8701339f2f13da647a51595d43f2dd956248d5b3", | |
| "language": "Python", | |
| "lines": 1162, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27881 | |
| }, | |
| { | |
| "path": "alphafold/model/geometry/__init__.py", | |
| "sha256": "7958376e4a4c32c8a973ce2fa94d68fbe93e4e6e0d626d78bccfc0242a75de41", | |
| "language": "Python", | |
| "lines": 31, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19181 | |
| }, | |
| { | |
| "path": "alphafold/model/geometry/rigid_matrix_vector.py", | |
| "sha256": "e485a90e6af521938c9f7aa307dd78bafaadff78249b654c21299ba297a67fc0", | |
| "language": "Python", | |
| "lines": 106, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22318 | |
| }, | |
| { | |
| "path": "alphafold/model/geometry/rotation_matrix.py", | |
| "sha256": "8b7130fd7d720e78576712a24747ddf99072f378b3709699a4d1200b46da1bf5", | |
| "language": "Python", | |
| "lines": 157, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 23432 | |
| }, | |
| { | |
| "path": "alphafold/model/geometry/struct_of_array.py", | |
| "sha256": "4e7c144fcbbcf5d795545b5ec4db346f61e2f89a6f53ddaa585e8c5162342ec7", | |
| "language": "Python", | |
| "lines": 220, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 24428 | |
| }, | |
| { | |
| "path": "alphafold/model/geometry/test_utils.py", | |
| "sha256": "244503b7528e57e5a5b4ff77f7e6e9510eb045d79f5343d3f788921b838a65af", | |
| "language": "Python", | |
| "lines": 98, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22340 | |
| }, | |
| { | |
| "path": "alphafold/model/geometry/utils.py", | |
| "sha256": "5a804893aa0edc2b3e1daad50fc5ea693c4f44f2496f2d67073f4c0ebf15d293", | |
| "language": "Python", | |
| "lines": 23, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18814 | |
| }, | |
| { | |
| "path": "alphafold/model/geometry/vector.py", | |
| "sha256": "d48c2f013a4792262604960434cb9a5b2cd773127ace9b9b87782b6e2b4955a6", | |
| "language": "Python", | |
| "lines": 217, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 24016 | |
| }, | |
| { | |
| "path": "alphafold/model/layer_stack.py", | |
| "sha256": "0fd8863656fa6c9b069569343eed823977cfcc87b5a3f8e12ae8e54a2451c4db", | |
| "language": "Python", | |
| "lines": 274, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25025 | |
| }, | |
| { | |
| "path": "alphafold/model/layer_stack_test.py", | |
| "sha256": "b60da4d16300f4116c8e4027ae079f7b2fad2d0955a814d1323379b4f3a6bb2e", | |
| "language": "Python", | |
| "lines": 335, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25441 | |
| }, | |
| { | |
| "path": "alphafold/model/lddt.py", | |
| "sha256": "22ebd462ad0493489fb0813fbb5392c4b26cca8807598c8ca12cf10e2ffa991d", | |
| "language": "Python", | |
| "lines": 88, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 21737 | |
| }, | |
| { | |
| "path": "alphafold/model/lddt_test.py", | |
| "sha256": "f1540d875ff7aae4d8430b6a7b17b300ccf72d731e0c259517a8b8ced5b08ab0", | |
| "language": "Python", | |
| "lines": 79, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 20609 | |
| }, | |
| { | |
| "path": "alphafold/model/mapping.py", | |
| "sha256": "9bb2bc5a3e412876bab62603387f7e51eda938808b9cfb3b92fd1180a3bc279e", | |
| "language": "Python", | |
| "lines": 223, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 24527 | |
| }, | |
| { | |
| "path": "alphafold/model/model.py", | |
| "sha256": "6f1254d558ebf19a062a6357845aeaf74809577c9ef88f6d07301624bbb6fdb0", | |
| "language": "Python", | |
| "lines": 192, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 24204 | |
| }, | |
| { | |
| "path": "alphafold/model/modules.py", | |
| "sha256": "dfad79e4f3c68db8b03bbca61a1e922f0d1f81ee0d9d3431ce8b01436098451d", | |
| "language": "Python", | |
| "lines": 2193, | |
| "truncated": false, | |
| "block": 4, | |
| "row": 50 | |
| }, | |
| { | |
| "path": "alphafold/model/modules_multimer.py", | |
| "sha256": "b4cf8dff99d4461454602be64367f455ffb60355e53a1f3504845c1502428727", | |
| "language": "Python", | |
| "lines": 1178, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27875 | |
| }, | |
| { | |
| "path": "alphafold/model/prng.py", | |
| "sha256": "09e62b8b2c24a2aa41704c0b474bfa45cc1b5a9121bf9d883232278de25f2a33", | |
| "language": "Python", | |
| "lines": 69, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 20143 | |
| }, | |
| { | |
| "path": "alphafold/model/prng_test.py", | |
| "sha256": "364ce654af07329c224f8316f444eb79f63cba6fd5a0cb42f7b992d7a37bbde6", | |
| "language": "Python", | |
| "lines": 46, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19282 | |
| }, | |
| { | |
| "path": "alphafold/model/quat_affine.py", | |
| "sha256": "dfc1d3e3df0e1966ed361f4dbaf9fc59fd525a8458bb7c4187c9c70d168ef749", | |
| "language": "Python", | |
| "lines": 459, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 26768 | |
| }, | |
| { | |
| "path": "alphafold/model/quat_affine_test.py", | |
| "sha256": "73702f5f680a96a64507edb91ba9b6f9908f0348574727717fde46dc9015dd40", | |
| "language": "Python", | |
| "lines": 150, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22973 | |
| }, | |
| { | |
| "path": "alphafold/model/r3.py", | |
| "sha256": "706df39f3f0c411bc2d7d422e2963305fb8d3e2d4d44b02ac50af99296df1cf8", | |
| "language": "Python", | |
| "lines": 320, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25615 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/__init__.py", | |
| "sha256": "7ee47be79cc30b61cf7111de0d29f6fa5e15737c741145502e998ff7b657ba05", | |
| "language": "Python", | |
| "lines": 14, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18534 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/data_transforms.py", | |
| "sha256": "e5518928e0595b0c85275221ce44018351672cbccf78d887e420ed104a1f97cd", | |
| "language": "Python", | |
| "lines": 625, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27159 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/input_pipeline.py", | |
| "sha256": "8e0a024f02f1e155bc207ce757ae8528331d601a39bfc28175f869fb6bd84c57", | |
| "language": "Python", | |
| "lines": 166, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 23203 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/protein_features.py", | |
| "sha256": "d10a8d7e38394744cfc9123ff872dd12a879c292866fefa989434797013cce3e", | |
| "language": "Python", | |
| "lines": 129, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22991 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/protein_features_test.py", | |
| "sha256": "4a93652817daafc8bbda99a33fae9214ebfa8b3fed97aab3217c286f5922f773", | |
| "language": "Python", | |
| "lines": 54, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19965 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/proteins_dataset.py", | |
| "sha256": "8c9c2ef93e3ce23dd510c394090e0f5534dc8359cf7914a4825a226930d8a918", | |
| "language": "Python", | |
| "lines": 166, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 23755 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/shape_helpers.py", | |
| "sha256": "0bdb468834e3f022d362c08d79f6f2a8f472120b0b660d3cd619d97721a84de1", | |
| "language": "Python", | |
| "lines": 47, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19463 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/shape_helpers_test.py", | |
| "sha256": "2abbbc95655b59a98d343a0f01b4b167c6d38b17323c13b0b0b73fcd9bf9ac6d", | |
| "language": "Python", | |
| "lines": 42, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19353 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/shape_placeholders.py", | |
| "sha256": "91457589ca3a16036ecd51b9674f8c3933492841be81f02eb9ddcfb206df1c87", | |
| "language": "Python", | |
| "lines": 20, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18759 | |
| }, | |
| { | |
| "path": "alphafold/model/tf/utils.py", | |
| "sha256": "cbee68e094dd27c7cd5f1baf79daa4883af7a50a9ba2f6d190e183281804909a", | |
| "language": "Python", | |
| "lines": 47, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19308 | |
| }, | |
| { | |
| "path": "alphafold/model/utils.py", | |
| "sha256": "edf6ffdeb9984684a8702eae41d4e6f19a65aaf5a8ae61408208ab6d6da3f4a8", | |
| "language": "Python", | |
| "lines": 153, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22732 | |
| }, | |
| { | |
| "path": "alphafold/notebooks/__init__.py", | |
| "sha256": "3a0f9738a3587ec7d758ec64eb227dc913d26341f381e805b409ef9043443a9d", | |
| "language": "Python", | |
| "lines": 14, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18522 | |
| }, | |
| { | |
| "path": "alphafold/notebooks/notebook_utils.py", | |
| "sha256": "1f0d09d1ade99d8528a8bd0a857c8a7a3728ad46f7a309b75396181d142d6d92", | |
| "language": "Python", | |
| "lines": 168, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 23938 | |
| }, | |
| { | |
| "path": "alphafold/notebooks/notebook_utils_test.py", | |
| "sha256": "73a4d5de382427fc19bcf0a81560cf2803a64a17f50582a016ca0cd30627ba86", | |
| "language": "Python", | |
| "lines": 196, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25006 | |
| }, | |
| { | |
| "path": "alphafold/relax/__init__.py", | |
| "sha256": "0b52f881c1ab7a485ad2fc581d2c42c486c54f6b5ec00a46b7f3ceed0e786e3b", | |
| "language": "Python", | |
| "lines": 14, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 18511 | |
| }, | |
| { | |
| "path": "alphafold/relax/amber_minimize.py", | |
| "sha256": "0e45ebc99661d565b6784db3d17f493cfee2a2d40f6aaeebd182459e512adda5", | |
| "language": "Python", | |
| "lines": 505, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 26970 | |
| }, | |
| { | |
| "path": "alphafold/relax/amber_minimize_test.py", | |
| "sha256": "2bf127a782e6d6ea6059ddb043a7626f14aa967e441b3e84feb23bbfdde044b7", | |
| "language": "Python", | |
| "lines": 133, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22479 | |
| }, | |
| { | |
| "path": "alphafold/relax/cleanup.py", | |
| "sha256": "7739a3f0a24061579c5f9720d60163d7b67b09a246c802e217340e2f22a5c9fd", | |
| "language": "Python", | |
| "lines": 127, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22823 | |
| }, | |
| { | |
| "path": "alphafold/relax/cleanup_test.py", | |
| "sha256": "f6a6a1e2469e2f1e132abe7230ae9118bc1367f5c1bc64dda5ea4ee7174dd829", | |
| "language": "Python", | |
| "lines": 137, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 23671 | |
| }, | |
| { | |
| "path": "alphafold/relax/relax.py", | |
| "sha256": "7b4c453dcb170a6e842f66a5f5e6e2bcc4151958a24e1d2329fecf1a6a15f87a", | |
| "language": "Python", | |
| "lines": 84, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 21549 | |
| }, | |
| { | |
| "path": "alphafold/relax/relax_test.py", | |
| "sha256": "cf652c16e7dd8ef13f63b620acc8597daf5caffa52cf19ce669cff8b08307706", | |
| "language": "Python", | |
| "lines": 89, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22020 | |
| }, | |
| { | |
| "path": "alphafold/relax/utils.py", | |
| "sha256": "07cd0d6f460fcee1857d7011eb5024458ece1742828b4cf8f27f6c9541465b57", | |
| "language": "Python", | |
| "lines": 69, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 20739 | |
| }, | |
| { | |
| "path": "alphafold/relax/utils_test.py", | |
| "sha256": "ac521509807ce0fec8ca61bb1dcca2a5ce993bfef7bf9da14bfc6bd0527acf5a", | |
| "language": "Python", | |
| "lines": 55, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 20162 | |
| }, | |
| { | |
| "path": "run_alphafold_tcrmodel2.3.py", | |
| "sha256": "3d55bc365c6308b26363befaaefa86704a0328e0d1aca77a15b2df3264252a37", | |
| "language": "Python", | |
| "lines": 712, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 27585 | |
| }, | |
| { | |
| "path": "run_tcrmodel2.py", | |
| "sha256": "13b3c3177ab1c7e38d59bb93e41aa22781094cd64b4596ec1d27acaa3eb49dc2", | |
| "language": "Python", | |
| "lines": 407, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 26717 | |
| }, | |
| { | |
| "path": "run_tcrmodel2_ub_pmhc.py", | |
| "sha256": "ab1e9aa9ae3216fddaa269e68e82a71098ccbe8eb0fa31171e74809368e2769a", | |
| "language": "Python", | |
| "lines": 385, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 26379 | |
| }, | |
| { | |
| "path": "run_tcrmodel2_ub_tcr.py", | |
| "sha256": "cfa0fcb14701299ab2cefbac3f49b31fe190ffcdd852ff8c92553b01ccbc6d4d", | |
| "language": "Python", | |
| "lines": 206, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 24464 | |
| }, | |
| { | |
| "path": "scripts/grab_chains.pl", | |
| "sha256": "885113e9c997273ab53d25b63ef6ca3d815b00992856b75a4cb108d80f3d9430", | |
| "language": "Perl", | |
| "lines": 40, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 17314 | |
| }, | |
| { | |
| "path": "scripts/parse_cdr_confidence_from_json.py", | |
| "sha256": "04b5320b034ca9cc8993ea8a473bd078c6b038d0d055c17a70502907e95d8841", | |
| "language": "Python", | |
| "lines": 32, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19079 | |
| }, | |
| { | |
| "path": "scripts/parse_tcr_seq.py", | |
| "sha256": "628c063affadc3b22890ad2db42dde72d519eb073f143c5243e518dcff4a3cd9", | |
| "language": "Python", | |
| "lines": 57, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19938 | |
| }, | |
| { | |
| "path": "scripts/parse_tcr_seq_from_json.py", | |
| "sha256": "6e1c78ce8d498cc9798cefa7656ec799096d97a2187f94f29f25ca515d0be89c", | |
| "language": "Python", | |
| "lines": 90, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 20583 | |
| }, | |
| { | |
| "path": "scripts/pdb_utils.py", | |
| "sha256": "c2e3705991c04a8c57f608138760d3df72c3dd6b24593784aebaf90224ac278f", | |
| "language": "Python", | |
| "lines": 116, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 21743 | |
| }, | |
| { | |
| "path": "scripts/pmhc_templates.py", | |
| "sha256": "184c933fae56fd12c9d076487b88ea2f6bfe7750170d65c500eb34d3227cd187", | |
| "language": "Python", | |
| "lines": 272, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 25475 | |
| }, | |
| { | |
| "path": "scripts/seq_utils.py", | |
| "sha256": "5dff9160918c840e167ebf02df87a96e63f03587af470ef161eb42959476e11c", | |
| "language": "Python", | |
| "lines": 63, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 19826 | |
| }, | |
| { | |
| "path": "scripts/tcr_utils.py", | |
| "sha256": "23c0090d9adbec50fdbd067dc745ca08d26f4986530c0b1724457aa2b30581b6", | |
| "language": "Python", | |
| "lines": 106, | |
| "truncated": false, | |
| "block": 3, | |
| "row": 22605 | |
| }, | |
| { | |
| "path": "singularity/run_tcrmodel2_singularity.sh", | |
| "sha256": "affb3ab0b493967fd6f7130d15345cac614b60a439d536763291134cf8e33f76", | |
| "language": "Shell", | |
| "lines": 23, | |
| "truncated": false, | |
| "block": 4, | |
| "row": 1708 | |
| } | |
| ] | |
| } |