Database / manifests /19 /github.com__10xgenomics__cellranger.json
opsecsystems's picture
Scripts of 2026-09-27: 2 new block(s), 375 manifest(s), 0 removed
f22351b verified
Raw History Blame Contribute Delete
186 kB
{
"format": "oscr-script-manifest/1",
"repository": "github.com/10xgenomics/cellranger",
"url": "https://github.com/10XGenomics/cellranger",
"host": "github.com",
"commit": "669395e208db7ce03354091e271d893074294d28",
"license": "MIT",
"license_confirmed_by": "license file LICENSE",
"redistribution": "yes",
"files": [
{
"path": "LICENSE",
"sha256": "92af97f87b1ae6ad452106c63bbbf9c58b23269bf43ac88080afdae61827acdb",
"language": "License",
"lines": 15,
"truncated": false,
"block": 1,
"row": 2207
},
{
"path": "README.md",
"sha256": "e19a2872fe81524ca4623bc6c5209b1ca5473cf8191785011c8ce3eb7e5559be",
"language": "Text",
"lines": 5,
"truncated": false,
"block": 1,
"row": 11785
},
{
"path": "bin/rna/mat2csv_lib.py",
"sha256": "64f1f188d26edc5ef03431ea86b1b7235e9a9d1bafa6ced2f89671c45d5c1be6",
"language": "Python",
"lines": 109,
"truncated": false,
"block": 1,
"row": 6918
},
{
"path": "bin/rna/mkgtf_lib.py",
"sha256": "d623fded78ef35cbe7a4df97d6a02345237b843fc495c208b60882b0c5fed49a",
"language": "Python",
"lines": 75,
"truncated": false,
"block": 1,
"row": 6301
},
{
"path": "bin/tenkit/check_fastq_params_lib.py",
"sha256": "f33d86d729454b1675b0ce326913d17c6a34f3a61f0529200c13457ed1c1ee28",
"language": "Python",
"lines": 51,
"truncated": false,
"block": 1,
"row": 5852
},
{
"path": "bin/tenkit/check_fastq_paths_lib.py",
"sha256": "8f510cd13258cc91bd1ad718e996d697479dcef4412d05da2b692ebd6ecf07c8",
"language": "Python",
"lines": 123,
"truncated": false,
"block": 1,
"row": 7314
},
{
"path": "bin/tenkit/docopts_lib.py",
"sha256": "c56042b8c98cc491c0515f47c0796c07d3cbb8c471ec40e54864d165c2866380",
"language": "Python",
"lines": 177,
"truncated": false,
"block": 1,
"row": 7775
},
{
"path": "bin/tenkit/get_flowcell_lib.py",
"sha256": "a59f9d97ab4aa053b246343ad5336f34aa58374a4908d93f8d2604843e95ccba",
"language": "Python",
"lines": 23,
"truncated": false,
"block": 1,
"row": 5396
},
{
"path": "bin/tenkit/get_max_index_len_lib.py",
"sha256": "cd676cc10a3a755932798964f2174a53592336a8a0abbe00e465f202b6dc74e4",
"language": "Python",
"lines": 27,
"truncated": false,
"block": 1,
"row": 5452
},
{
"path": "bin/tenkit/truncate_lib.py",
"sha256": "c1b0e6da965ac4353d7517a790617ca498ce9909c8040908ab4ffd39bb0e0b63",
"language": "Python",
"lines": 191,
"truncated": false,
"block": 1,
"row": 7684
},
{
"path": "bin/tenkit/upload_lib.py",
"sha256": "60928ced0b0898f365118b517e8ebcb3ebe8458ac4e5c296299dfe22b0e0fcc8",
"language": "Python",
"lines": 227,
"truncated": false,
"block": 1,
"row": 7940
},
{
"path": "lib/bin/fetch_imgt_lib.py",
"sha256": "fbb771dff81602d4c5e85f40c176e2fac36c94037ea9b6de5b229db5d2420509",
"language": "Python",
"lines": 316,
"truncated": false,
"block": 1,
"row": 8365
},
{
"path": "lib/go/cmd/godemux/main.go",
"sha256": "c28ceeb56da73feb13ea1346bb61f78b054d68be2809fc5150257c44af42137f",
"language": "Go",
"lines": 328,
"truncated": false,
"block": 1,
"row": 485
},
{
"path": "lib/go/cmd/sitecheck/main.go",
"sha256": "7a79fa84b832800fd46ca931502f66593632512c0563f3d65698b87adb01f8f6",
"language": "Go",
"lines": 42,
"truncated": false,
"block": 1,
"row": 463
},
{
"path": "lib/go/cmd/telemetry/main.go",
"sha256": "9c2b9c95d6df3e8418ea0905ae00d87a8ef8b2b577ace28d79dfad0d20e3b538",
"language": "Go",
"lines": 485,
"truncated": false,
"block": 1,
"row": 488
},
{
"path": "lib/go/cmd/telemetry_config_converter/main.go",
"sha256": "0e8542d7d96c5c88fb90cb069734b62e6f84bff84cbdbb960381544ee66f91be",
"language": "Go",
"lines": 97,
"truncated": false,
"block": 1,
"row": 471
},
{
"path": "lib/go/multi_csv/multi.go",
"sha256": "6e37d18b0322c5a53b73b226e3f2f85cd5b58930a8ac62d50601721ff05e21a2",
"language": "Go",
"lines": 65,
"truncated": false,
"block": 1,
"row": 466
},
{
"path": "lib/go/sitecheck/checkers.go",
"sha256": "ac47d29c6411ada38ea9caa63145acc4539774d65b01827072cdd47812b109ad",
"language": "Go",
"lines": 993,
"truncated": false,
"block": 1,
"row": 492
},
{
"path": "lib/go/sitecheck/sitecheck.go",
"sha256": "40a7edfb3c0a18a795f9c98c311e67b33fc4a24c5b95c3fd8fc8348a379d83eb",
"language": "Go",
"lines": 196,
"truncated": false,
"block": 1,
"row": 480
},
{
"path": "lib/go/telemetry/collector/cgroup.go",
"sha256": "bace2891f81587ada4e0ee911ba2e7dddefb8563b140a6cd3c82ec6720f0cafc",
"language": "Go",
"lines": 154,
"truncated": false,
"block": 1,
"row": 473
},
{
"path": "lib/go/telemetry/collector/distro.go",
"sha256": "d679683d6d227f974404e48252e248f7844c39a753a44fb630c0b64654a55247",
"language": "Go",
"lines": 210,
"truncated": false,
"block": 1,
"row": 479
},
{
"path": "lib/go/telemetry/collector/env.go",
"sha256": "bd72fc63c5165b62b2f8e031373abd83d95aa594ea0c9f8aabb8aca4202c4b95",
"language": "Go",
"lines": 31,
"truncated": false,
"block": 1,
"row": 459
},
{
"path": "lib/go/telemetry/collector/file_context.go",
"sha256": "2ec64a60466a8efd2091d8624b767f264fc87a2cf9a739363a5b754c5150ab7b",
"language": "Go",
"lines": 124,
"truncated": false,
"block": 1,
"row": 474
},
{
"path": "lib/go/telemetry/collector/file_filter.go",
"sha256": "20097e7f3ac0ce991f360201b5decae4bb2f7467ac78631476e9702d1cc19912",
"language": "Go",
"lines": 91,
"truncated": false,
"block": 1,
"row": 468
},
{
"path": "lib/go/telemetry/collector/file_size.go",
"sha256": "a606b945d6b761f7e223f0c2659d772defb3eac451687e965c0b256177405ac3",
"language": "Go",
"lines": 11,
"truncated": false,
"block": 1,
"row": 457
},
{
"path": "lib/go/telemetry/collector/filesystem.go",
"sha256": "75c20b1696ecfd61e15d3192456646d11bcebd6c4fb449587dae5291509c297b",
"language": "Go",
"lines": 339,
"truncated": false,
"block": 1,
"row": 483
},
{
"path": "lib/go/telemetry/collector/find_files.go",
"sha256": "4a6392108670cdc92109565399da1eca33dee71f21b602d8bff6e2355ef1cdb4",
"language": "Go",
"lines": 904,
"truncated": false,
"block": 1,
"row": 491
},
{
"path": "lib/go/telemetry/collector/flag.go",
"sha256": "957d4c56e707afb08aef1f1a798b475f88f34b7242f730774d62187e2f4e8062",
"language": "Go",
"lines": 59,
"truncated": false,
"block": 1,
"row": 464
},
{
"path": "lib/go/telemetry/collector/glibc.go",
"sha256": "930900ad96459406b58cd90f889ea711041e88de32e39ddc37568ed16041c83a",
"language": "Go",
"lines": 17,
"truncated": false,
"block": 1,
"row": 458
},
{
"path": "lib/go/telemetry/collector/group_count.go",
"sha256": "0b26f8dceb39169804a89586fec3f6e36ded2c80e78131abcbe73ef04e4ec04d",
"language": "Go",
"lines": 29,
"truncated": false,
"block": 1,
"row": 461
},
{
"path": "lib/go/telemetry/collector/perf.go",
"sha256": "3a974f85e571e8a6fb97e81239c626d9717028ef5b0689e1449151a216e3352e",
"language": "Go",
"lines": 121,
"truncated": false,
"block": 1,
"row": 477
},
{
"path": "lib/go/telemetry/collector/rlimit.go",
"sha256": "6a4adffc6317742b140d33de16c1451e0c212ef0a3aba628acc6a1c688c872cf",
"language": "Go",
"lines": 48,
"truncated": false,
"block": 1,
"row": 462
},
{
"path": "lib/go/telemetry/collector/special.go",
"sha256": "7b973262f3adb25dcda132ca0e7a880ea4fe7087ee83435a14abad7d4dd021e4",
"language": "Go",
"lines": 185,
"truncated": false,
"block": 1,
"row": 478
},
{
"path": "lib/go/telemetry/collector/value.go",
"sha256": "47647d48b3eba810d0f0517addffc8f30bbbc9778c228e141e44301a93a2bba8",
"language": "Go",
"lines": 90,
"truncated": false,
"block": 1,
"row": 472
},
{
"path": "lib/go/telemetry/config/bucket.go",
"sha256": "af1dd89ef6b64fc365a3de983c4aaeb74090259da77d5a1ea1b52d1afbc583a9",
"language": "Go",
"lines": 600,
"truncated": false,
"block": 1,
"row": 489
},
{
"path": "lib/go/telemetry/config/compile.go",
"sha256": "9c7a1427158fcd1ba4dd568048de21952b59b0c2b9037054d60e82bb9cd8ad6d",
"language": "Go",
"lines": 415,
"truncated": false,
"block": 1,
"row": 487
},
{
"path": "lib/go/telemetry/config/config.go",
"sha256": "e1d325aceb45388ce27fa72469c6a0cd839f1346c876e0315aab073989be652f",
"language": "Go",
"lines": 98,
"truncated": false,
"block": 1,
"row": 475
},
{
"path": "lib/go/telemetry/config/sources.go",
"sha256": "d0450eb7fac2007f1631ac73bb752868e01d0b804f3a8ad205c9284c11789655",
"language": "Go",
"lines": 269,
"truncated": false,
"block": 1,
"row": 482
},
{
"path": "lib/go/telemetry/config/support.go",
"sha256": "4a26429c139504dc525432c551df57c54a60e6eb18aa7defaf5bff0ca549f0bb",
"language": "Go",
"lines": 96,
"truncated": false,
"block": 1,
"row": 470
},
{
"path": "lib/go/telemetry/converter/convert.go",
"sha256": "e8a4e4449bcb05d9347d2eb45489f4eca19dc297d9864d796073f6751f729834",
"language": "Go",
"lines": 35,
"truncated": false,
"block": 1,
"row": 460
},
{
"path": "lib/go/telemetry/event/event.go",
"sha256": "70d1e466402509031602bc62b30e431a870eaa663ecbc47461a87f0055acaa6a",
"language": "Go",
"lines": 229,
"truncated": false,
"block": 1,
"row": 481
},
{
"path": "lib/go/telemetry/settings/cache.go",
"sha256": "835ee4e739945bccfd511b778fbf83f2eb5c8ff7a78d94c323ff17da8f0a1b24",
"language": "Go",
"lines": 86,
"truncated": false,
"block": 1,
"row": 469
},
{
"path": "lib/go/telemetry/settings/send.go",
"sha256": "74507888566a1fd3e96e92b74bdb5054901e2ab8e9a58b859b65369a6ad88ffc",
"language": "Go",
"lines": 337,
"truncated": false,
"block": 1,
"row": 484
},
{
"path": "lib/go/telemetry/settings/settings.go",
"sha256": "22ab77e24ded2fa8007068a8efacbb016c850d2bb1bb257adf9831edccccf9ac",
"language": "Go",
"lines": 548,
"truncated": false,
"block": 1,
"row": 490
},
{
"path": "lib/go/telemetry/settings/settings_linux.go",
"sha256": "67c77321609f560a447e30bcf7f2593084e019d68dfcf8969b67ca78cb5e07df",
"language": "Go",
"lines": 10,
"truncated": false,
"block": 1,
"row": 455
},
{
"path": "lib/go/telemetry/value_context/value_context.go",
"sha256": "48f2156457fdde52f5e256008276a81efa9a1123aef154002d4a97be1bd1ae97",
"language": "Go",
"lines": 131,
"truncated": false,
"block": 1,
"row": 476
},
{
"path": "lib/go/tenkit/fastq/constants.go",
"sha256": "2bc078e3b8407d571890d59e73ea89c074f9a7fcfa23dbff65c7fd402df0a5f3",
"language": "Go",
"lines": 10,
"truncated": false,
"block": 1,
"row": 456
},
{
"path": "lib/go/tenkit/fastq/io.go",
"sha256": "f4cba15762af8ae90abd46a1bae799494fd01e6ff34db29e7bf3280067254a52",
"language": "Go",
"lines": 442,
"truncated": false,
"block": 1,
"row": 486
},
{
"path": "lib/go/tenkit/fastq/utils.go",
"sha256": "9158fef8db339939deb99b7867ce65d147478d7a6bbf2a3356b13b0cdd067fa3",
"language": "Go",
"lines": 68,
"truncated": false,
"block": 1,
"row": 465
},
{
"path": "lib/python/cellranger/aggr/preprocessing.py",
"sha256": "2e2fcf2c38cce81d24af78fb0542ca2b9a2b9ca953ae2bff36eeb161236656ab",
"language": "Python",
"lines": 103,
"truncated": false,
"block": 1,
"row": 7149
},
{
"path": "lib/python/cellranger/altair_plot_utils.py",
"sha256": "22d5291222bfa456d449c8a498fa1cd863f4fac34da3b6df24c5bbe0dd2052fa",
"language": "Python",
"lines": 250,
"truncated": false,
"block": 1,
"row": 8271
},
{
"path": "lib/python/cellranger/altair_utils.py",
"sha256": "2d68def221293c4ef00fe90e0d569e8103c45b01e510db2b2b46c741109c094e",
"language": "Python",
"lines": 123,
"truncated": false,
"block": 1,
"row": 7318
},
{
"path": "lib/python/cellranger/analysis/analysis_types.py",
"sha256": "61cf1e0f2071a6fbec01c4f197218bf2310ffef0a4176b934739556129bd0c88",
"language": "Python",
"lines": 148,
"truncated": false,
"block": 1,
"row": 7619
},
{
"path": "lib/python/cellranger/analysis/batch_correction.py",
"sha256": "16ec2c0bdb570a7580ae1215d2e5c42b4f173bd980d27b811d7f11c22f7d3e6f",
"language": "Python",
"lines": 200,
"truncated": false,
"block": 1,
"row": 8284
},
{
"path": "lib/python/cellranger/analysis/clustering.py",
"sha256": "fdb24db2d2116e68ebb68456ac0b07dfb70c08730b7a7453f06e48cc0c74ffe2",
"language": "Python",
"lines": 241,
"truncated": false,
"block": 1,
"row": 8267
},
{
"path": "lib/python/cellranger/analysis/combinatorics.py",
"sha256": "45825d8e5311923b2307cc255c8414b964fadba0125a7de586a029b879222b5b",
"language": "Python",
"lines": 107,
"truncated": false,
"block": 1,
"row": 6703
},
{
"path": "lib/python/cellranger/analysis/constants.py",
"sha256": "267bca707575046ad14889ccf19fd1add5ddf19eb378a3163b55198e24a7db1f",
"language": "Python",
"lines": 86,
"truncated": false,
"block": 1,
"row": 6591
},
{
"path": "lib/python/cellranger/analysis/diffexp.py",
"sha256": "0e12713f5fd514d0136c4a639f41a831ae875b879c9a8fce0b4f8b73878942a2",
"language": "Python",
"lines": 265,
"truncated": false,
"block": 1,
"row": 8440
},
{
"path": "lib/python/cellranger/analysis/graphclust.py",
"sha256": "37a08beafd98ec65a5eed0312b564c541e853f3ff036fb63d5cf54a878e9e6ff",
"language": "Python",
"lines": 331,
"truncated": false,
"block": 1,
"row": 8616
},
{
"path": "lib/python/cellranger/analysis/io.py",
"sha256": "695995b32e43166e9258d25db51b29fd45f6408f2e6208aed409a78414c03096",
"language": "Python",
"lines": 268,
"truncated": false,
"block": 1,
"row": 8410
},
{
"path": "lib/python/cellranger/analysis/irlb.py",
"sha256": "93614d6fc635811c794ab2ee364430f1046a93322283ffd58eb0667a3d934249",
"language": "Python",
"lines": 231,
"truncated": false,
"block": 1,
"row": 8147
},
{
"path": "lib/python/cellranger/analysis/jibes.py",
"sha256": "4dc82f2d8c035a8ef9f0f917a8b8bdeb384a12f3b90fe112985e82bcf69bae51",
"language": "Python",
"lines": 409,
"truncated": false,
"block": 1,
"row": 9042
},
{
"path": "lib/python/cellranger/analysis/jibes_constants.py",
"sha256": "6e957eb4ba4d4fa309d630e0ef3fe3f9818fc6ae656eff009a5c868e6de91f39",
"language": "Python",
"lines": 13,
"truncated": false,
"block": 1,
"row": 5538
},
{
"path": "lib/python/cellranger/analysis/jibes_data.py",
"sha256": "c696810b5ceaaa3288a2513aed426fca82f6b6e4182b9eda4553ca40aa69589c",
"language": "Python",
"lines": 53,
"truncated": false,
"block": 1,
"row": 6097
},
{
"path": "lib/python/cellranger/analysis/jibes_py.py",
"sha256": "5aaa8a4aa2fac9f661d61cd511d4f99d0c55943966e1ef0cc1e67594c2c5ebd4",
"language": "Python",
"lines": 322,
"truncated": false,
"block": 1,
"row": 8887
},
{
"path": "lib/python/cellranger/analysis/kmeans.py",
"sha256": "6b282d755bf1443d793154e7159b70d43c40d02ee8e5ec27cf3bf94b3f8d91e9",
"language": "Python",
"lines": 118,
"truncated": false,
"block": 1,
"row": 6965
},
{
"path": "lib/python/cellranger/analysis/multigenome.py",
"sha256": "e0e4f2c2e31dbc5e58caf9ba6df603dc515bf1d8a4723f1c6be23851050834f4",
"language": "Python",
"lines": 424,
"truncated": false,
"block": 1,
"row": 9182
},
{
"path": "lib/python/cellranger/analysis/pca.py",
"sha256": "e8803dca79844f4cd5fd60d10c83c09c9006596a856e4bb8be9126446f804d8f",
"language": "Python",
"lines": 349,
"truncated": false,
"block": 1,
"row": 8983
},
{
"path": "lib/python/cellranger/analysis/singlegenome.py",
"sha256": "7322c81db31230ac4b56c6885d633af11a73c4570b4f141f2eda0cf28c1e62e1",
"language": "Python",
"lines": 355,
"truncated": false,
"block": 1,
"row": 9002
},
{
"path": "lib/python/cellranger/analysis/stats.py",
"sha256": "ff1f8feda9a12aae95348ca50d395fab197a8ff21cbcb01a8d7138d5ba61409e",
"language": "Python",
"lines": 103,
"truncated": false,
"block": 1,
"row": 7135
},
{
"path": "lib/python/cellranger/bam_constants.py",
"sha256": "ea55eaa4f7bf94455dc34400fdbf5c4c9dd41de228b3765cbd894959c78f824a",
"language": "Python",
"lines": 36,
"truncated": false,
"block": 1,
"row": 5623
},
{
"path": "lib/python/cellranger/barcodes/utils.py",
"sha256": "ca8700c6e4976aded3fe0da147de7e2215a9a864cec6e4df0756e143f7a34a84",
"language": "Python",
"lines": 233,
"truncated": false,
"block": 1,
"row": 7871
},
{
"path": "lib/python/cellranger/cell_barcodes.py",
"sha256": "ac20d925eca2659440db64790ecb3939552f625774bb50dc7c1115b92f728b74",
"language": "Python",
"lines": 70,
"truncated": false,
"block": 1,
"row": 6498
},
{
"path": "lib/python/cellranger/cell_calling.py",
"sha256": "6d30916ec45a3bc47f7abd55e2b66fe86c6020a0fc0965e525fbc70d07c7470e",
"language": "Python",
"lines": 383,
"truncated": false,
"block": 1,
"row": 9011
},
{
"path": "lib/python/cellranger/cell_calling_helpers.py",
"sha256": "1e65f1c7cc50c66cd3443fda02f4ae0860c624be1be1e2c30c22cf2b0dca272c",
"language": "Python",
"lines": 1317,
"truncated": false,
"block": 1,
"row": 9795
},
{
"path": "lib/python/cellranger/cell_calling_stats.py",
"sha256": "7dd3cfe72010d61a5957a895e0cd1cecaacf101b67b599171ea515586b043596",
"language": "Python",
"lines": 208,
"truncated": false,
"block": 1,
"row": 8292
},
{
"path": "lib/python/cellranger/cell_typing/azimuth/annotate.py",
"sha256": "34ade6b68670c0585d2102c43726a874b7016a8c01ae699e34eacf444057d435",
"language": "Python",
"lines": 588,
"truncated": false,
"block": 1,
"row": 9423
},
{
"path": "lib/python/cellranger/cell_typing/azimuth/annotate_tools.py",
"sha256": "79d3f46e818ac2d77643a24a2d4bd6c2d6193d73bf322ff6f3a1359d432453b2",
"language": "Python",
"lines": 1591,
"truncated": false,
"block": 1,
"row": 9810
},
{
"path": "lib/python/cellranger/cell_typing/azimuth/azimuth_ref_paths.py",
"sha256": "4a2f485bd435cc3705810ab428a7531261349836fd85e1dc174f077280c7163d",
"language": "Python",
"lines": 54,
"truncated": false,
"block": 1,
"row": 6233
},
{
"path": "lib/python/cellranger/cell_typing/azimuth/azimuth_utils.py",
"sha256": "43d22a42b1361f9605253d274f0e960f93da85ebe07d530df8055c1c3210304b",
"language": "Python",
"lines": 668,
"truncated": false,
"block": 1,
"row": 9548
},
{
"path": "lib/python/cellranger/cell_typing/broad_tenx/cas_metrics.py",
"sha256": "eb331b95416e1d715417ebb73999d4829f32f8c9c02273919308f5ad434aee3e",
"language": "Python",
"lines": 484,
"truncated": false,
"block": 1,
"row": 9231
},
{
"path": "lib/python/cellranger/cell_typing/broad_tenx/cas_postprocessing.py",
"sha256": "18965f957c46522967331165999ad7120da91a3cacc6bf25e7c8403171209059",
"language": "Python",
"lines": 129,
"truncated": false,
"block": 1,
"row": 7247
},
{
"path": "lib/python/cellranger/cell_typing/broad_tenx/cloud_cas_client.py",
"sha256": "791b44effa2cdf5491b5c755c79d6dd2a31038d44997955b61b20fec57a7bfc6",
"language": "Python",
"lines": 747,
"truncated": false,
"block": 1,
"row": 9487
},
{
"path": "lib/python/cellranger/cell_typing/broad_tenx/cloud_cas_utils.py",
"sha256": "b11cf4005a231c971129174747ec27447e9d50dd0483e109ed5560e59ee53996",
"language": "Python",
"lines": 523,
"truncated": false,
"block": 1,
"row": 9369
},
{
"path": "lib/python/cellranger/cell_typing/broad_tenx/common.py",
"sha256": "61cbb8074d5ecc2cb1d5bfe16b02451649d52bf2f4f1b70c39108a2837b76c31",
"language": "Python",
"lines": 96,
"truncated": false,
"block": 1,
"row": 7007
},
{
"path": "lib/python/cellranger/cell_typing/common_cell_typing.py",
"sha256": "caa3795176b1eaae6f7f50df03085f475040c9329dab72181accdb7eb39797f6",
"language": "Python",
"lines": 97,
"truncated": false,
"block": 1,
"row": 6728
},
{
"path": "lib/python/cellranger/chemistry.py",
"sha256": "0ecb81d2f76984367d463aabcac43326bf8fa1b29f09612cc243118c525bd81a",
"language": "Python",
"lines": 191,
"truncated": false,
"block": 1,
"row": 7756
},
{
"path": "lib/python/cellranger/cigar.py",
"sha256": "76077483f628d7474662a875c6c7f37b5aa1d91524e6dba6fa038d9fb7d48ad6",
"language": "Python",
"lines": 41,
"truncated": false,
"block": 1,
"row": 5904
},
{
"path": "lib/python/cellranger/constants.py",
"sha256": "e4040184b2b4e2653146d1d0d7f4ac0acc8809585028fd8079859ab60962b9db",
"language": "Python",
"lines": 182,
"truncated": false,
"block": 1,
"row": 7730
},
{
"path": "lib/python/cellranger/cr_io.py",
"sha256": "e411f4694461f5ae986c3d9cabe6fa2c5e3ee43231110b1ca77dc0b0cc383166",
"language": "Python",
"lines": 321,
"truncated": false,
"block": 1,
"row": 8515
},
{
"path": "lib/python/cellranger/csv_io.py",
"sha256": "722b31ced53cb532936a9bf7db2ed267b4d7fe49d2e4c0ca0493cd45c4e9d389",
"language": "Python",
"lines": 55,
"truncated": false,
"block": 1,
"row": 6059
},
{
"path": "lib/python/cellranger/csv_utils.py",
"sha256": "f80b86de65bec65368f55f83a6226a5e9e4efc5b30dbdeb572e6fe856106d8fc",
"language": "Python",
"lines": 240,
"truncated": false,
"block": 1,
"row": 8344
},
{
"path": "lib/python/cellranger/env.py",
"sha256": "5e0c1c1686f91aa66f1bc67f1439db310382e469cc57e546b654e795aaa85260",
"language": "Python",
"lines": 18,
"truncated": false,
"block": 1,
"row": 5267
},
{
"path": "lib/python/cellranger/feature/antibody/analysis.py",
"sha256": "925e0f9e230a184517467a6e73255754aca77ed0293094671b43553c177f0d10",
"language": "Python",
"lines": 186,
"truncated": false,
"block": 1,
"row": 8157
},
{
"path": "lib/python/cellranger/feature/antigen/specificity.py",
"sha256": "2cfaac0610720403ad6b514067dd4b1e31b68f7d6c834db78021ddbeddb1ce32",
"language": "Python",
"lines": 808,
"truncated": false,
"block": 1,
"row": 9647
},
{
"path": "lib/python/cellranger/feature/crispr/measure_perturbations.py",
"sha256": "ac073b3467de1ff94b1df61df94b45392f6929862de8b39ce6300f717a41aa47",
"language": "Python",
"lines": 803,
"truncated": false,
"block": 1,
"row": 9644
},
{
"path": "lib/python/cellranger/feature/crispr/protospacer_calling.py",
"sha256": "fab37ec9a665d4679d53c60415e514dc819c72ed96db2b17247b7af1cde6dad3",
"language": "Python",
"lines": 16,
"truncated": false,
"block": 1,
"row": 5417
},
{
"path": "lib/python/cellranger/feature/feature_assigner.py",
"sha256": "c2a87306222f16664703c4ec0fdef9d59b45b02530abc1ed7fc8ecef3f6edcd8",
"language": "Python",
"lines": 1419,
"truncated": false,
"block": 1,
"row": 9813
},
{
"path": "lib/python/cellranger/feature/feature_assignments.py",
"sha256": "c926fc2a57357e6d1bbb7e08eb196e32ad5d2af97d14620f41d0e7ffef247d59",
"language": "Python",
"lines": 483,
"truncated": false,
"block": 1,
"row": 9179
},
{
"path": "lib/python/cellranger/feature/jibes_tag_assigner.py",
"sha256": "9a31255306173a7ec0a10d98782796a4a3238b3b665067725cb689ad4546b9eb",
"language": "Python",
"lines": 426,
"truncated": false,
"block": 1,
"row": 9153
},
{
"path": "lib/python/cellranger/feature/multiplexing/infer_throughput.py",
"sha256": "6717dd54b83564ee91dfc78052ec4bf1fb7fa63b719efa398582d9e40c67b2a5",
"language": "Python",
"lines": 54,
"truncated": false,
"block": 1,
"row": 6201
},
{
"path": "lib/python/cellranger/feature/multiplexing/metrics_utils.py",
"sha256": "e6389af6f4654a87481e428ef4d8aaadb9c1eb6128fac74a3808170e16c41416",
"language": "Python",
"lines": 84,
"truncated": false,
"block": 1,
"row": 6729
},
{
"path": "lib/python/cellranger/feature/throughputs.py",
"sha256": "8babfaff0134188769290d7a976b678a81d4af06c4108e01bf640dbab27a8b54",
"language": "Python",
"lines": 20,
"truncated": false,
"block": 1,
"row": 5485
},
{
"path": "lib/python/cellranger/feature/utils.py",
"sha256": "9f3939839a92351086b726ad12718653c7915acf9769f1cd32a55a2868e553a6",
"language": "Python",
"lines": 77,
"truncated": false,
"block": 1,
"row": 6589
},
{
"path": "lib/python/cellranger/feature_ref.py",
"sha256": "e1b446e93626041c3b3c5a0a9c7c2e4e8a6a1c6a113c77748d8de14384ac5e84",
"language": "Python",
"lines": 737,
"truncated": false,
"block": 1,
"row": 9577
},
{
"path": "lib/python/cellranger/h5_constants.py",
"sha256": "997a70a3072a1d03651a45a3bd09a935fa71feed8097a8a28b46acadcff990fc",
"language": "Python",
"lines": 53,
"truncated": false,
"block": 1,
"row": 6143
},
{
"path": "lib/python/cellranger/hdf5.py",
"sha256": "58577b375f3ff7f5b9d83c27815439bd6ffce2c4a6ee027caeb6c9213bae4553",
"language": "Python",
"lines": 238,
"truncated": false,
"block": 1,
"row": 8109
},
{
"path": "lib/python/cellranger/library_constants.py",
"sha256": "ccd1d127fc00cdbd9aa53892b5d566f5da873c4759e2fb66dd4f622ec08abb5e",
"language": "Python",
"lines": 13,
"truncated": false,
"block": 1,
"row": 5256
},
{
"path": "lib/python/cellranger/logperf.py",
"sha256": "7de0ee9e3a9e685c0ab6a45144006cc5599da2bdedb51fefca3eac485c887fdf",
"language": "Python",
"lines": 60,
"truncated": false,
"block": 1,
"row": 6121
},
{
"path": "lib/python/cellranger/matrix.py",
"sha256": "f90d3448a73cc92453c5472a1bd69bb0712067c8f6c5d7f34cd5c6c4e7d04063",
"language": "Python",
"lines": 2061,
"truncated": false,
"block": 1,
"row": 9847
},
{
"path": "lib/python/cellranger/metrics.py",
"sha256": "7871da8582f726062950f8fc955e95fcf53b196b8f81ace723c12ba0b0ff7536",
"language": "Python",
"lines": 47,
"truncated": false,
"block": 1,
"row": 5946
},
{
"path": "lib/python/cellranger/molecule_counter.py",
"sha256": "13ec524d8f73c7579a1c7d575d0f94c0ce725dc53e6159666a7635539689c7a7",
"language": "Python",
"lines": 1301,
"truncated": false,
"block": 1,
"row": 9763
},
{
"path": "lib/python/cellranger/molecule_counter_converter.py",
"sha256": "35bf9c3e1e7afe607a91c9205a78b48810d10889c3d01ccbf311b042e04a278d",
"language": "Python",
"lines": 333,
"truncated": false,
"block": 1,
"row": 8836
},
{
"path": "lib/python/cellranger/molecule_counter_extensions.py",
"sha256": "305e054ed48729c309f6cbda50d55ddfde5e16721ab63c5520d06b79fa448eb6",
"language": "Python",
"lines": 106,
"truncated": false,
"block": 1,
"row": 7185
},
{
"path": "lib/python/cellranger/mro_types/structs.py",
"sha256": "52c371c92bc4581eae84a06b74df5e7d81e8a2b0e886b3fd15165f000e65bf16",
"language": "Python",
"lines": 515,
"truncated": false,
"block": 1,
"row": 8660
},
{
"path": "lib/python/cellranger/mtx_to_matrix_converter.py",
"sha256": "8fb6f8027bd4f4774f41f120a1d60d2324b74698f51d453d485e225c5021c434",
"language": "Python",
"lines": 93,
"truncated": false,
"block": 1,
"row": 6810
},
{
"path": "lib/python/cellranger/multi/barcode_rank_plots.py",
"sha256": "b53a80d16071fbb8c97b0dfd7ee7793134fe141b957813869b9259a7f8a70c9b",
"language": "Python",
"lines": 87,
"truncated": false,
"block": 1,
"row": 6627
},
{
"path": "lib/python/cellranger/multi/build_per_sample_outs.py",
"sha256": "437e227c9cf4be012f5c330e6efd8def95c17842e5a413e20e932b1c20270b26",
"language": "Python",
"lines": 67,
"truncated": false,
"block": 1,
"row": 6608
},
{
"path": "lib/python/cellranger/pandas_utils.py",
"sha256": "a2c6e6061ddec58b6175877c637a3fc1962b31ddd6fd6922ab9b08707f302cd5",
"language": "Python",
"lines": 797,
"truncated": false,
"block": 1,
"row": 9631
},
{
"path": "lib/python/cellranger/preflight.py",
"sha256": "2cabc36a5255ab8483723ffdbd3c3b8c04d2a40e8436e4a5c895068d7102a885",
"language": "Python",
"lines": 672,
"truncated": false,
"block": 1,
"row": 9529
},
{
"path": "lib/python/cellranger/products.py",
"sha256": "26ea098013a2f89b66b855a03e9aabccb52e4b0525f668241d18f2f1e5c3078a",
"language": "Python",
"lines": 31,
"truncated": false,
"block": 1,
"row": 5861
},
{
"path": "lib/python/cellranger/read_level_multiplexing.py",
"sha256": "e1dd60a87972a2d52b53948f0d60e855f2628b134ddaf71e91bf31c0a31457f9",
"language": "Python",
"lines": 42,
"truncated": false,
"block": 1,
"row": 6026
},
{
"path": "lib/python/cellranger/reference.py",
"sha256": "520da1736e3966b306a8602c2f66c089e0ff236b636a7d5f17789f14cddd49e1",
"language": "Python",
"lines": 751,
"truncated": false,
"block": 1,
"row": 9574
},
{
"path": "lib/python/cellranger/reference_builder.py",
"sha256": "8cb8ed77985cf8aefdb3aadd508244d031343d1d5d8db7e5d966101aec2b5a1d",
"language": "Python",
"lines": 470,
"truncated": false,
"block": 1,
"row": 9274
},
{
"path": "lib/python/cellranger/reference_hash.py",
"sha256": "280228ae72474501d5e0fab131c1fca52efc1ff1ff9e069188f74e779f26367c",
"language": "Python",
"lines": 15,
"truncated": false,
"block": 1,
"row": 5332
},
{
"path": "lib/python/cellranger/reference_paths.py",
"sha256": "f2e6b41c333311fff689783de7dcac03f071522abd902b0857676a52af080013",
"language": "Python",
"lines": 123,
"truncated": false,
"block": 1,
"row": 7195
},
{
"path": "lib/python/cellranger/rna/feature_ref.py",
"sha256": "5f4a149a6fbf95eb6d62e76c985b05dcc9bd0897faa11fc2bb50d045f44266b1",
"language": "Python",
"lines": 627,
"truncated": false,
"block": 1,
"row": 9500
},
{
"path": "lib/python/cellranger/rna/library.py",
"sha256": "323f3ef2dfd013a62e6da0bd01a5ae1edb172773378f4b96d81e70f91189332f",
"language": "Python",
"lines": 197,
"truncated": false,
"block": 1,
"row": 7676
},
{
"path": "lib/python/cellranger/rna/matrix.py",
"sha256": "21d8de30a4b002e3bfd63bb836540213ae68fcca4adc5b55e2e33d5cd9126454",
"language": "Python",
"lines": 25,
"truncated": false,
"block": 1,
"row": 5508
},
{
"path": "lib/python/cellranger/rna/refactor_report_matrix.py",
"sha256": "d1b984c9558284ffd9baf1420497f0062ba3b91bbfc5594f1f9a47ea95edab91",
"language": "Python",
"lines": 149,
"truncated": false,
"block": 1,
"row": 7436
},
{
"path": "lib/python/cellranger/rna/report_matrix.py",
"sha256": "bb040af37be8c811bd2e9bdf606592c3e2ac77c2f5c40da1e601faed69753bbd",
"language": "Python",
"lines": 510,
"truncated": false,
"block": 1,
"row": 9317
},
{
"path": "lib/python/cellranger/sample_def.py",
"sha256": "c42a783464d34e63dfda64474a90056e361eeb0c0985df0d0e55ca40073e8504",
"language": "Python",
"lines": 92,
"truncated": false,
"block": 1,
"row": 6803
},
{
"path": "lib/python/cellranger/segment.py",
"sha256": "ba0c616efd175eca7b67d559785096307286c9ae761c1019749e73bd59e178fc",
"language": "Python",
"lines": 288,
"truncated": false,
"block": 1,
"row": 8198
},
{
"path": "lib/python/cellranger/sgt.py",
"sha256": "e4dfb4c2c90dfa776cdf60b252d362d9d2a6c8c4e01c2459c26591a54fd5dd53",
"language": "Python",
"lines": 142,
"truncated": false,
"block": 1,
"row": 7336
},
{
"path": "lib/python/cellranger/sparse.py",
"sha256": "4b11a46ecdd544c22089db92a342de99cfaf72d4ebd9a168dc6671460b55cb19",
"language": "Python",
"lines": 164,
"truncated": false,
"block": 1,
"row": 7291
},
{
"path": "lib/python/cellranger/spatial/data_utils.py",
"sha256": "9d6a6f53cdedcb160f80d0b1acfff5d16f8e85ad3c18b69c335891d780f4fdb4",
"language": "Python",
"lines": 289,
"truncated": false,
"block": 1,
"row": 8419
},
{
"path": "lib/python/cellranger/spatial/hd_cs_websummary_color_utils.py",
"sha256": "ddff54521437f332982ad700ea8b55c6ad40d3feb5566d93bcf2243ddf6589da",
"language": "Python",
"lines": 357,
"truncated": false,
"block": 1,
"row": 8686
},
{
"path": "lib/python/cellranger/spatial/image.py",
"sha256": "692a88d2278b45c9987b719bf1b2a162058f79183758b129413d8930179091b3",
"language": "Python",
"lines": 90,
"truncated": false,
"block": 1,
"row": 6867
},
{
"path": "lib/python/cellranger/spatial/image_util.py",
"sha256": "eef21728699e975d495e219f96302a6bd6c79e9a762b276b804c06118f9913ee",
"language": "Python",
"lines": 545,
"truncated": false,
"block": 1,
"row": 9318
},
{
"path": "lib/python/cellranger/spatial/multi_layered_images.py",
"sha256": "5212e89552207da24f1d1df3a8accfc70c610d66f4f6b838ae29591ceb09f9b6",
"language": "Python",
"lines": 105,
"truncated": false,
"block": 1,
"row": 6654
},
{
"path": "lib/python/cellranger/spatial/pipeline_mode.py",
"sha256": "6fef288222527d31354d25bc28f7e7b0e0ed8aaeabeb573dd9d079775db7c875",
"language": "Python",
"lines": 71,
"truncated": false,
"block": 1,
"row": 6269
},
{
"path": "lib/python/cellranger/spatial/segmentation_constants.py",
"sha256": "b90d95ed5dab62d5824dd859f95b49e5c32b94b548b920fe0cf6e6adb8d29ae8",
"language": "Python",
"lines": 45,
"truncated": false,
"block": 1,
"row": 6148
},
{
"path": "lib/python/cellranger/spatial/spatial_aggr_files.py",
"sha256": "f35b63653ea10e67009e3d608bc0a47fdb5f74ac6a316f801456eca3c8d5fe59",
"language": "Python",
"lines": 38,
"truncated": false,
"block": 1,
"row": 5901
},
{
"path": "lib/python/cellranger/spatial/tiffer.py",
"sha256": "e72f38db2fe350f3383d78e28c7a82ea8a27e02a0ecddf2a5f18997d9f16be55",
"language": "Python",
"lines": 215,
"truncated": false,
"block": 1,
"row": 8110
},
{
"path": "lib/python/cellranger/spatial/webp_image_utils.py",
"sha256": "5abb97e022964af25b942d2b7bc3b7a9e38696d04fef8925f7e2256165ae0f39",
"language": "Python",
"lines": 44,
"truncated": false,
"block": 1,
"row": 6084
},
{
"path": "lib/python/cellranger/subsample.py",
"sha256": "692ed4b532d0fa2262d5e51fc36dddb00f53287c0f15d93ad6406d617bc1c65b",
"language": "Python",
"lines": 910,
"truncated": false,
"block": 1,
"row": 9680
},
{
"path": "lib/python/cellranger/targeted/gmm.py",
"sha256": "91792bc1d8e5016a61a4e0f20116be498689e2b5f463ce6bea5295cfbfacacff",
"language": "Python",
"lines": 183,
"truncated": false,
"block": 1,
"row": 7890
},
{
"path": "lib/python/cellranger/targeted/rtl_multiplexing.py",
"sha256": "43b5b122f818902a6e6e4d1dc99de12111ca9ac1cad7519a95df99dda51badbf",
"language": "Python",
"lines": 101,
"truncated": false,
"block": 1,
"row": 6833
},
{
"path": "lib/python/cellranger/targeted/simple_utils.py",
"sha256": "31d4ba306c48eabbb3d827ca5ed6c6eb119ac0406a8cf891a527d5a16736af17",
"language": "Python",
"lines": 441,
"truncated": false,
"block": 1,
"row": 9281
},
{
"path": "lib/python/cellranger/targeted/targeted_constants.py",
"sha256": "78efa39e675f9ca7dd38b9ff1caf7f7d182b951f0a64d1c36afe0b94fc706395",
"language": "Python",
"lines": 103,
"truncated": false,
"block": 1,
"row": 6897
},
{
"path": "lib/python/cellranger/targeted/targeted_spatial.py",
"sha256": "c6e3a1da922435f338eb7a595671f4faf6db023dd2142b665bdc04f89d4fee51",
"language": "Python",
"lines": 5,
"truncated": false,
"block": 1,
"row": 5147
},
{
"path": "lib/python/cellranger/targeted/utils.py",
"sha256": "5fc34d2f104530d141937468bbe7d4d7593e080f4e12a07c55733c8e0f4fca3f",
"language": "Python",
"lines": 155,
"truncated": false,
"block": 1,
"row": 7537
},
{
"path": "lib/python/cellranger/utils.py",
"sha256": "dae6b7ef03fd332fba5d15c9b5b003de373dc18e0eb3ae55fa605fe7722e580c",
"language": "Python",
"lines": 388,
"truncated": false,
"block": 1,
"row": 8705
},
{
"path": "lib/python/cellranger/vdj/annotations.py",
"sha256": "a836930d2fa30bdebb0323d8f62e8ce0f215efef5bbf0bf4368d3143ec3640b1",
"language": "Python",
"lines": 1883,
"truncated": false,
"block": 1,
"row": 9832
},
{
"path": "lib/python/cellranger/vdj/chain_types.py",
"sha256": "b58b806e1f448ff3e01bb9562373300ab6e340c20b62f45c7c2734a68d2c4a3d",
"language": "Python",
"lines": 37,
"truncated": false,
"block": 1,
"row": 5783
},
{
"path": "lib/python/cellranger/vdj/clonotype.py",
"sha256": "0fc2802fb7ecf76cbf200307de173954c009e836edb97dc472899d6e856ca8f3",
"language": "Python",
"lines": 33,
"truncated": false,
"block": 1,
"row": 5792
},
{
"path": "lib/python/cellranger/vdj/constants.py",
"sha256": "02ae4f425b11294df6a8cdf4e9320a325a0a015e3e3dbb57bd77fd52fee3c8ee",
"language": "Python",
"lines": 164,
"truncated": false,
"block": 1,
"row": 7084
},
{
"path": "lib/python/cellranger/vdj/preflight.py",
"sha256": "a38f4fac2ab6f247a9c4c6eb3b471c4354a0870a49755d8477dc260b2ef0073c",
"language": "Python",
"lines": 159,
"truncated": false,
"block": 1,
"row": 7848
},
{
"path": "lib/python/cellranger/vdj/reference.py",
"sha256": "c28fba88f9d8bf9736676a1c0d340db5870bcbf16ecb859ae623dd274fa95d02",
"language": "Python",
"lines": 410,
"truncated": false,
"block": 1,
"row": 8885
},
{
"path": "lib/python/cellranger/vdj/reference_maker.py",
"sha256": "f30ff521b0ddb06679d131a64189ac0889d2a89bc247d4cd4dc722969bbac44e",
"language": "Python",
"lines": 336,
"truncated": false,
"block": 1,
"row": 8799
},
{
"path": "lib/python/cellranger/vdj/report.py",
"sha256": "2d759adb90abcd46c67fc06a40bc69be67f82ba8e16d4c6bb8bf3ec0e8b55d98",
"language": "Python",
"lines": 831,
"truncated": false,
"block": 1,
"row": 9713
},
{
"path": "lib/python/cellranger/vdj/utils.py",
"sha256": "66d6849bb0fe961263bd972cd250818eca14a8a38d02700c19750aa18e7a7426",
"language": "Python",
"lines": 188,
"truncated": false,
"block": 1,
"row": 7655
},
{
"path": "lib/python/cellranger/version.py",
"sha256": "2318caeda798ec8cc56097fbe4b22402454c333a5aa6544a3f0e553cfbab78e3",
"language": "Python",
"lines": 36,
"truncated": false,
"block": 1,
"row": 5752
},
{
"path": "lib/python/cellranger/webshim/common.py",
"sha256": "14ccb034756a16ee74febbf4347f7bfcf8e80208c7a9d3b896e25ce48f550e79",
"language": "Python",
"lines": 1551,
"truncated": false,
"block": 1,
"row": 9784
},
{
"path": "lib/python/cellranger/webshim/constants/gex.py",
"sha256": "989031f5fc09a016b81a26b335ff7177db33a3670c6915826484eccccb6eb7d1",
"language": "Python",
"lines": 1548,
"truncated": false,
"block": 1,
"row": 9836
},
{
"path": "lib/python/cellranger/webshim/constants/shared.py",
"sha256": "3d9d06bbb78c4ad6a17c1db3dd4d09ad1d67e6f1fbdf9b1d1eb94ceaa6d3b556",
"language": "Python",
"lines": 149,
"truncated": false,
"block": 1,
"row": 6847
},
{
"path": "lib/python/cellranger/webshim/constants/vdj.py",
"sha256": "0c627a4b2dfa00d290c1c6f7dc92f04e53359ab320437c6e0ab242ab8959494f",
"language": "Python",
"lines": 479,
"truncated": false,
"block": 1,
"row": 9375
},
{
"path": "lib/python/cellranger/webshim/data.py",
"sha256": "685433ddfa12b37b66d3e0d741c1d9837bce3037b3b1b8d0f185246ba98c8018",
"language": "Python",
"lines": 490,
"truncated": false,
"block": 1,
"row": 9221
},
{
"path": "lib/python/cellranger/webshim/jibes_plotting.py",
"sha256": "179ce1f7048ed291c2212c3f31fc6cb6252ab74c21d8ce9e3a3a0533bbc6e94c",
"language": "Python",
"lines": 106,
"truncated": false,
"block": 1,
"row": 6848
},
{
"path": "lib/python/cellranger/webshim/jibes_web.py",
"sha256": "d782a83ea16010117af68617bfbeb16a3c65fc2ba439d61c48f7a00c15feaeae",
"language": "Python",
"lines": 120,
"truncated": false,
"block": 1,
"row": 7215
},
{
"path": "lib/python/cellranger/websummary/aggr_websummary_builder.py",
"sha256": "be5e884a7078c7ead8e7c12283a0cd5c69601a5d5c64dacae0dd5c713a4b7d5d",
"language": "Python",
"lines": 203,
"truncated": false,
"block": 1,
"row": 8115
},
{
"path": "lib/python/cellranger/websummary/analysis_tab_aux.py",
"sha256": "7a1702df64f2b46d2b7474d33dc2f2b2ce50f3f8d594dce5898193aa9e3269da",
"language": "Python",
"lines": 814,
"truncated": false,
"block": 1,
"row": 9649
},
{
"path": "lib/python/cellranger/websummary/analysis_tab_core.py",
"sha256": "c25dd78835a74e8d3409f33e52f7a7b998fab9ffb4873302d81e75fa2de312f1",
"language": "Python",
"lines": 554,
"truncated": false,
"block": 1,
"row": 9390
},
{
"path": "lib/python/cellranger/websummary/cell_barcode_dataset.py",
"sha256": "02ae9290e19cc468fc0c8bb12c5af88706e98201f5d2f373a4f1c2c2b809c204",
"language": "Python",
"lines": 46,
"truncated": false,
"block": 1,
"row": 6014
},
{
"path": "lib/python/cellranger/websummary/helpers.py",
"sha256": "d09dc2fe7ae29191bc249f6e520256aae89b322ed5f4520652b2ddbe0ca4f0e7",
"language": "Python",
"lines": 10,
"truncated": false,
"block": 1,
"row": 5361
},
{
"path": "lib/python/cellranger/websummary/histograms.py",
"sha256": "4c7a45b976a5866e0222596fc84b2a5f8e6324867027b96287a6fa5e40cdba72",
"language": "Python",
"lines": 243,
"truncated": false,
"block": 1,
"row": 8422
},
{
"path": "lib/python/cellranger/websummary/isotypes.py",
"sha256": "c96caf6378efa5f5c3992d9037d87b1187cebf0ac9929efe44b74442bd90bcc4",
"language": "Python",
"lines": 552,
"truncated": false,
"block": 1,
"row": 9421
},
{
"path": "lib/python/cellranger/websummary/metrics.py",
"sha256": "48545c93dbdda16b904ef7b394755171937919a917a6a66aceeeaee23dd449a2",
"language": "Python",
"lines": 727,
"truncated": false,
"block": 1,
"row": 9542
},
{
"path": "lib/python/cellranger/websummary/numeric_converters.py",
"sha256": "d0b1a0e50eeee2b59244fd4258f458cbd594a4ce886717eca0f6981595f0b348",
"language": "Python",
"lines": 38,
"truncated": false,
"block": 1,
"row": 5769
},
{
"path": "lib/python/cellranger/websummary/plotly_tools.py",
"sha256": "7d83aa980112484df2a998acc86de361519ebf17789f3a1cc9e34dbb04607868",
"language": "Python",
"lines": 59,
"truncated": false,
"block": 1,
"row": 6186
},
{
"path": "lib/python/cellranger/websummary/react_components.py",
"sha256": "80f793ab92664e4731d0fbcdf4326b5a9fd80379231bb70e853fb29bf081ae7a",
"language": "Python",
"lines": 758,
"truncated": false,
"block": 1,
"row": 9523
},
{
"path": "lib/python/cellranger/websummary/react_summarize.py",
"sha256": "5a01551901323d4bc9c8afb0833bb8d1e4642a3225aaa8d85378e9528d7450f1",
"language": "Python",
"lines": 29,
"truncated": false,
"block": 1,
"row": 5683
},
{
"path": "lib/python/cellranger/websummary/sample_properties.py",
"sha256": "d88a723a7cd55fab3a2d2722898668781f4163e0b807b5cd0f64d4bbba53add9",
"language": "Python",
"lines": 375,
"truncated": false,
"block": 1,
"row": 8865
},
{
"path": "lib/python/cellranger/websummary/spatial_utils.py",
"sha256": "ffae5dfc0c935e61f6516798b488c4d77bf9647a3baf6c374e93e5b1c52ff89d",
"language": "Python",
"lines": 307,
"truncated": false,
"block": 1,
"row": 8584
},
{
"path": "lib/python/cellranger/websummary/summary_tab.py",
"sha256": "6ca28c3b7d3dd730ad04b6a68f4e8283e178a2e9b97467b05e7c042fb8b5b6bd",
"language": "Python",
"lines": 1237,
"truncated": false,
"block": 1,
"row": 9765
},
{
"path": "lib/python/cellranger/websummary/treemaps.py",
"sha256": "045b5fbd03163466d165c20eba0d329228fbbfbed176d5ba42f7b38e986cdfb1",
"language": "Python",
"lines": 175,
"truncated": false,
"block": 1,
"row": 8031
},
{
"path": "lib/python/cellranger/websummary/vdj.py",
"sha256": "8a19b878a12fb6017cd5b7a2013499acd817ab41f6e220d2ac055b53c87c8571",
"language": "Python",
"lines": 543,
"truncated": false,
"block": 1,
"row": 9266
},
{
"path": "lib/python/cellranger/websummary/violin_plots.py",
"sha256": "62a18d219ec357c86dae7a3caf05dfce61ba042ae61f0f94cec8a0a1a58b63f9",
"language": "Python",
"lines": 389,
"truncated": false,
"block": 1,
"row": 8867
},
{
"path": "lib/python/cellranger/websummary/web_summary_builder.py",
"sha256": "ce2eb5b2a4a5bae9fb705df2e9be40cb396761e41d3d30e5dc3cf4c54084a133",
"language": "Python",
"lines": 552,
"truncated": false,
"block": 1,
"row": 9249
},
{
"path": "lib/python/cellranger/wrapped_tables.py",
"sha256": "d95579bbdbbf01cfd5baab6284590d0887b53dc377d3e8ee0453ccb154b142a8",
"language": "Python",
"lines": 62,
"truncated": false,
"block": 1,
"row": 6254
},
{
"path": "lib/python/common/pyfasta.py",
"sha256": "5cc3931931a19a8fc1ea8d306104b80316a1541da500440906718b30804eaf0a",
"language": "Python",
"lines": 53,
"truncated": false,
"block": 1,
"row": 6031
},
{
"path": "lib/python/tenkit/__init__.py",
"sha256": "3de1d236e27f6597509ec2bfbbf2b8161d65e3fe50b8ed1837a44ed85d3e34ad",
"language": "Python",
"lines": 4,
"truncated": false,
"block": 1,
"row": 5057
},
{
"path": "lib/python/tenkit/bcl.py",
"sha256": "eb1c66bd3314473f8b906a9dd394caea496cee9dd7c4883d78710b52677ccc38",
"language": "Python",
"lines": 614,
"truncated": false,
"block": 1,
"row": 9477
},
{
"path": "lib/python/tenkit/cache.py",
"sha256": "5df79b89329a63575e2bde43788b9f1d131e3ee537503975ee576a208092f263",
"language": "Python",
"lines": 103,
"truncated": false,
"block": 1,
"row": 6840
},
{
"path": "lib/python/tenkit/constants.py",
"sha256": "fd79265c40a9da40ade71d1d671ff2b86a5586db1bde497e7f158d789c9836a7",
"language": "Python",
"lines": 49,
"truncated": false,
"block": 1,
"row": 5959
},
{
"path": "lib/python/tenkit/cpu_support.c",
"sha256": "94031d9f738650bb96045163d54516788aba64e31a487d4f083e0bcca75458de",
"language": "C",
"lines": 14,
"truncated": false,
"block": 1,
"row": 5
},
{
"path": "lib/python/tenkit/fasta.py",
"sha256": "bd21bcea05b9a5ef87ac70e24edf55e8f775c9be009a126bf77ced36c548e33e",
"language": "Python",
"lines": 652,
"truncated": false,
"block": 1,
"row": 9404
},
{
"path": "lib/python/tenkit/lane.py",
"sha256": "b37df4710dd48850da1fa3756768b7560de77333a0b996c783c4a178744c8652",
"language": "Python",
"lines": 241,
"truncated": false,
"block": 1,
"row": 8197
},
{
"path": "lib/python/tenkit/log_subprocess.py",
"sha256": "c2d6e0e446e32d29144076ef4128c2815b46fbc4e5ac5fb4542b1bd8256c3540",
"language": "Python",
"lines": 314,
"truncated": false,
"block": 1,
"row": 8622
},
{
"path": "lib/python/tenkit/pandas/__init__.py",
"sha256": "5d87cd728661d8192b8f753855842dba7228d2bd7b37f73e250f3ffbb82a545c",
"language": "Python",
"lines": 14,
"truncated": false,
"block": 1,
"row": 5410
},
{
"path": "lib/python/tenkit/preflight.py",
"sha256": "da99d9f77efbe18f13b63dd91bdda084083a2f6f9483281b6deb645919280b8a",
"language": "Python",
"lines": 606,
"truncated": false,
"block": 1,
"row": 9360
},
{
"path": "lib/python/tenkit/reference.py",
"sha256": "01797a2abfbf87c4feca2bf66f5a9dc425e366d17e0c79dd7ed3e72ed513ada4",
"language": "Python",
"lines": 52,
"truncated": false,
"block": 1,
"row": 6000
},
{
"path": "lib/python/tenkit/safe_json.py",
"sha256": "20f681c847a2aea5a16a66a90e18cd04539e374cc846f48cf3ccb075fc397dbc",
"language": "Python",
"lines": 383,
"truncated": false,
"block": 1,
"row": 8876
},
{
"path": "lib/python/tenkit/sample_index.py",
"sha256": "e02ca93e28b7c7934ce1b778ad4e9605a4893bbac0c72167c86a1ca6840c57aa",
"language": "Python",
"lines": 5032,
"truncated": true,
"block": 1,
"row": 9884
},
{
"path": "lib/python/tenkit/samplesheet.py",
"sha256": "6e722ad5d39ff74132e72b80aab1cadebaaf575db99095ffba8d25b23ac95cc3",
"language": "Python",
"lines": 1068,
"truncated": false,
"block": 1,
"row": 9686
},
{
"path": "lib/python/tenkit/seq.py",
"sha256": "24992f2d94ecc250c7e96afdcb37e611bf9698b12b1baa9c27a0c0c22e134748",
"language": "Python",
"lines": 54,
"truncated": false,
"block": 1,
"row": 6238
},
{
"path": "lib/python/tenkit/stats.py",
"sha256": "3175c37892d75693222805195aef46a587a84ad35c9f9be8ed93cbfdc2d07a0c",
"language": "Python",
"lines": 32,
"truncated": false,
"block": 1,
"row": 5632
},
{
"path": "lib/python/websummary/summarize.py",
"sha256": "b6d26bd4228e28e0033e29187bdf715da5745f5b581056052711967aba266f1c",
"language": "Python",
"lines": 192,
"truncated": false,
"block": 1,
"row": 8100
},
{
"path": "lib/rust/amino/src/lib.rs",
"sha256": "511bed81441ebbb0e58f34939d4065bc3914a4b07d7433c5dec904026cb38f8a",
"language": "Rust",
"lines": 118,
"truncated": false,
"block": 1,
"row": 10776
},
{
"path": "lib/rust/barcode/src/binned.rs",
"sha256": "037a1e2fe6375782b84ff91faf34d826d23362202b980558f144f4f029b6aa43",
"language": "Rust",
"lines": 144,
"truncated": false,
"block": 1,
"row": 10814
},
{
"path": "lib/rust/barcode/src/cell_name.rs",
"sha256": "5e4d78cfc6ced39f216103b76d4295f614ac5d9ece30fea875e18ce48a2dfa82",
"language": "Rust",
"lines": 95,
"truncated": false,
"block": 1,
"row": 10748
},
{
"path": "lib/rust/barcode/src/correct_indel.rs",
"sha256": "5b5d5f4e5af3ceddc1b6ecc7147c786d6653223ed242f0d1986e05d241df387f",
"language": "Rust",
"lines": 161,
"truncated": false,
"block": 1,
"row": 10867
},
{
"path": "lib/rust/barcode/src/corrector.rs",
"sha256": "9df6d00d8e6fe47dd697b7bf71a79e1ee41dc400d95f74cf1be1f931d1c0b6ef",
"language": "Rust",
"lines": 348,
"truncated": false,
"block": 1,
"row": 10984
},
{
"path": "lib/rust/barcode/src/io_utils.rs",
"sha256": "be0b9fee6d46a0f3c5affcbaed447da24a017c571dc9543172f82f044c71c311",
"language": "Rust",
"lines": 20,
"truncated": false,
"block": 1,
"row": 10663
},
{
"path": "lib/rust/barcode/src/lib.rs",
"sha256": "e69e9e5949f44850c1b51f463aa9b81165b6988faf4f0dc1a803fd30b8834bdd",
"language": "Rust",
"lines": 1356,
"truncated": false,
"block": 1,
"row": 11080
},
{
"path": "lib/rust/barcode/src/short_string.rs",
"sha256": "8b6c3e7a72bf24debd7def195b44c37c0602f8d20ec32053412d2ddb356c5840",
"language": "Rust",
"lines": 209,
"truncated": false,
"block": 1,
"row": 10863
},
{
"path": "lib/rust/barcode/src/whitelist.rs",
"sha256": "9c07188ba1f461e6ec0915313a247daa38a7c1b14d93440f90c9df6944060ab5",
"language": "Rust",
"lines": 811,
"truncated": false,
"block": 1,
"row": 11064
},
{
"path": "lib/rust/barcode_extensions/src/lib.rs",
"sha256": "75f5b02e2257a407ff9ae19fa6d7021a4b4a4e20e56f334c2f707072910b855b",
"language": "Rust",
"lines": 72,
"truncated": false,
"block": 1,
"row": 10759
},
{
"path": "lib/rust/barcode_extensions/src/stubs/mod.rs",
"sha256": "ff32f308d0cea8365580817e32257c8cd45d8f90ade0160747f813669b27750f",
"language": "Rust",
"lines": 31,
"truncated": false,
"block": 1,
"row": 10677
},
{
"path": "lib/rust/barcodes_folder/src/lib.rs",
"sha256": "fa733d844261b4e6d0f551dc9398ff5afc3eeef8f1540c4fbf66ede9859b50bc",
"language": "Rust",
"lines": 198,
"truncated": false,
"block": 1,
"row": 10906
},
{
"path": "lib/rust/bazel_utils/src/lib.rs",
"sha256": "119b1141f3b1d52728b72f48641c834c7f1803255fcc0ab68c0c366428732576",
"language": "Rust",
"lines": 81,
"truncated": false,
"block": 1,
"row": 10751
},
{
"path": "lib/rust/byteseq/src/lib.rs",
"sha256": "48c2c0ac820d6830f3b3e53234e938f443f6cb7f412a8d846d98b986a9f2ebff",
"language": "Rust",
"lines": 54,
"truncated": false,
"block": 1,
"row": 10698
},
{
"path": "lib/rust/clonotype_assigner/src/assigner.rs",
"sha256": "245c3cefbc93349b5a08e325e258749a16a37d3abd03448364044640b226dc21",
"language": "Rust",
"lines": 282,
"truncated": false,
"block": 1,
"row": 10960
},
{
"path": "lib/rust/clonotype_assigner/src/fill_clonotype_info.rs",
"sha256": "edc1a06f78b88b69a868ea09bc2c37a9c6952e6e11e7317a0eab8733ac8e31c7",
"language": "Rust",
"lines": 169,
"truncated": false,
"block": 1,
"row": 10889
},
{
"path": "lib/rust/clonotype_assigner/src/handle_no_clonotyping.rs",
"sha256": "5b1a3386acedbc20685a9358dcf90c54d086e59c4188ca8fad1f0a48092c5767",
"language": "Rust",
"lines": 73,
"truncated": false,
"block": 1,
"row": 10743
},
{
"path": "lib/rust/clonotype_assigner/src/lib.rs",
"sha256": "10b71c959649159a5c22d5a1c207c6bbaf8de7cb03edc868472519f79352f8e3",
"language": "Rust",
"lines": 10,
"truncated": false,
"block": 1,
"row": 10641
},
{
"path": "lib/rust/clonotype_assigner/src/write_clonotype_outs.rs",
"sha256": "2460f51d7126996408ac97140a785329007038efb18e111c8bc9249d8bded18a",
"language": "Rust",
"lines": 217,
"truncated": false,
"block": 1,
"row": 10921
},
{
"path": "lib/rust/clonotype_assigner/src/write_concat_ref_outs.rs",
"sha256": "48d658f5315ea4ab9d4fa7049cc23b266db1a2eee11c3d0c3c0ce7e873d891c3",
"language": "Rust",
"lines": 198,
"truncated": false,
"block": 1,
"row": 10929
},
{
"path": "lib/rust/clonotype_assigner/src/write_consensus_bam.rs",
"sha256": "022b69c0c09f0be9194256546fa4076bcbe1a83ca355f5ca72bb616fa58be19e",
"language": "Rust",
"lines": 158,
"truncated": false,
"block": 1,
"row": 10879
},
{
"path": "lib/rust/clonotype_assigner/src/write_consensus_txt.rs",
"sha256": "6b02e444e3dcb587a356c7498fa5840a7c6afbfae74dd4b213b9c39eb2ebe49b",
"language": "Rust",
"lines": 213,
"truncated": false,
"block": 1,
"row": 10943
},
{
"path": "lib/rust/cloud_utils/src/lib.rs",
"sha256": "edbd406fa91e22bf71f46ff229d545f0f4615c05c916199b4e2a722cdf22a602",
"language": "Rust",
"lines": 32,
"truncated": false,
"block": 1,
"row": 10683
},
{
"path": "lib/rust/cr_aggr/src/bin/cr_aggr.rs",
"sha256": "245222edecc364055eda90070b12f0d121226c278468319f4df3fe174c60563a",
"language": "Rust",
"lines": 66,
"truncated": false,
"block": 1,
"row": 10720
},
{
"path": "lib/rust/cr_aggr/src/create_antigen_clonotype_clustermap.rs",
"sha256": "9cc8eeaee963ac5b8cb04910c181721981d91eebad24be5acc558cdfafda96c0",
"language": "Rust",
"lines": 51,
"truncated": false,
"block": 1,
"row": 10716
},
{
"path": "lib/rust/cr_aggr/src/errors.rs",
"sha256": "f6c18a3f02f7af24738988a6cd55a649a68696bd0bbe92b923e14b2dd806ad7c",
"language": "Rust",
"lines": 133,
"truncated": false,
"block": 1,
"row": 10823
},
{
"path": "lib/rust/cr_aggr/src/lib.rs",
"sha256": "add83b77a025e10dd20c8a40c666de1a721148909de309567f1144f3624af398",
"language": "Rust",
"lines": 26,
"truncated": false,
"block": 1,
"row": 10662
},
{
"path": "lib/rust/cr_aggr/src/match_vdj_outs.rs",
"sha256": "00514f886a01db591cc6c8cdd8495c04f304aeffcf58f6f4d5613167a79f5258",
"language": "Rust",
"lines": 141,
"truncated": false,
"block": 1,
"row": 10853
},
{
"path": "lib/rust/cr_aggr/src/merge_molecules.rs",
"sha256": "79f27eddeed34d413af27e22dcca905be8676305dddad814a5831041a4dfc20b",
"language": "Rust",
"lines": 623,
"truncated": false,
"block": 1,
"row": 11041
},
{
"path": "lib/rust/cr_aggr/src/parse_aggr_csv.rs",
"sha256": "89a320990350268d204f101eee1d16b8aba399c58108a26774d53f1fb0f5aea9",
"language": "Rust",
"lines": 1904,
"truncated": false,
"block": 1,
"row": 11092
},
{
"path": "lib/rust/cr_aggr/src/process_vdj_proto.rs",
"sha256": "ea4c3738bca11aa6f8c9cc6173097f40ee240d6d06ff72cf6032a18c0324d4ce",
"language": "Rust",
"lines": 270,
"truncated": false,
"block": 1,
"row": 10953
},
{
"path": "lib/rust/cr_aggr/src/run_enclone_aggr.rs",
"sha256": "a56e35514e88b0d176e238571a304cfa5c9e1109c80cd43169911a9fca95c252",
"language": "Rust",
"lines": 145,
"truncated": false,
"block": 1,
"row": 10846
},
{
"path": "lib/rust/cr_aggr/src/setup_vdj_aggr.rs",
"sha256": "9163507ad88d6f1e783c728e9cd0012ec2193bbba31675f0bbc646c02231fa08",
"language": "Rust",
"lines": 324,
"truncated": false,
"block": 1,
"row": 10968
},
{
"path": "lib/rust/cr_aggr/src/websummary/annotation_card.rs",
"sha256": "1b114a36ba34230b8d6fe1fb2a040e5c243ab4acfe3a5f295affb42587c44549",
"language": "Rust",
"lines": 232,
"truncated": false,
"block": 1,
"row": 10946
},
{
"path": "lib/rust/cr_aggr/src/websummary/cdr3_table.rs",
"sha256": "496da68cb9964c4418eca4646037d998ec8e7e00c27a2b360c0f635e6a4d2349",
"language": "Rust",
"lines": 217,
"truncated": false,
"block": 1,
"row": 10909
},
{
"path": "lib/rust/cr_aggr/src/websummary/cells_card.rs",
"sha256": "6269f1be90b85b6543b4ec0b1aa2d81eb922df9b5fa0fdd69e90850cea2e39eb",
"language": "Rust",
"lines": 150,
"truncated": false,
"block": 1,
"row": 10848
},
{
"path": "lib/rust/cr_aggr/src/websummary/hero_metrics.rs",
"sha256": "03730b0939cf470163336aabf0dcfdde33532b86be8d0b863240d5d03fd9fac1",
"language": "Rust",
"lines": 69,
"truncated": false,
"block": 1,
"row": 10730
},
{
"path": "lib/rust/cr_aggr/src/websummary/mod.rs",
"sha256": "ee28c7f8ba664ad647a295859672ad40740e97d167fc54011e6dd53a3b1e3f5e",
"language": "Rust",
"lines": 260,
"truncated": false,
"block": 1,
"row": 10907
},
{
"path": "lib/rust/cr_aggr/src/write_aggr_ann.rs",
"sha256": "be674c668af41b83045c2e543efed25703aa7fb1a8a276b7cc1768cd3d288f13",
"language": "Rust",
"lines": 120,
"truncated": false,
"block": 1,
"row": 10805
},
{
"path": "lib/rust/cr_aggr/src/write_contig_proto.rs",
"sha256": "426348ed76904469c9742d8de6681a7871993af96de5c636d6af953755c99c78",
"language": "Rust",
"lines": 147,
"truncated": false,
"block": 1,
"row": 10864
},
{
"path": "lib/rust/cr_aggr/src/write_ws_json.rs",
"sha256": "b55fa3bd19157975693faf5f5c85d5b22ac9bba426ab01bb7f424a29534bfd43",
"language": "Rust",
"lines": 319,
"truncated": false,
"block": 1,
"row": 10986
},
{
"path": "lib/rust/cr_ana/src/bin/cr_ana.rs",
"sha256": "9e2c5cb256430d656f85e77d839ea10c3e7f1d3b1ca07e1eb82d2e3f9776f8cf",
"language": "Rust",
"lines": 49,
"truncated": false,
"block": 1,
"row": 10688
},
{
"path": "lib/rust/cr_ana/src/hclust_utils.rs",
"sha256": "c53e3a5c9c6df614a0a996f48035e7755e56a6d5e23519af046cb50e9e251d89",
"language": "Rust",
"lines": 97,
"truncated": false,
"block": 1,
"row": 10800
},
{
"path": "lib/rust/cr_ana/src/io/csv.rs",
"sha256": "be57c4423d26931084f0ae4ac2a6395bd140d7407dd90e9c6786c13d697abe3f",
"language": "Rust",
"lines": 254,
"truncated": false,
"block": 1,
"row": 10918
},
{
"path": "lib/rust/cr_ana/src/io/h5.rs",
"sha256": "a51a70ec6c80dbc3c470a4d28eb621151e39d867e9e8970c0288539f327086fc",
"language": "Rust",
"lines": 538,
"truncated": false,
"block": 1,
"row": 11026
},
{
"path": "lib/rust/cr_ana/src/io/mod.rs",
"sha256": "4dc90b6548dc166710f695d31cc9776dd0fd040b6d4d9362b38073208effa341",
"language": "Rust",
"lines": 5,
"truncated": false,
"block": 1,
"row": 10623
},
{
"path": "lib/rust/cr_ana/src/lib.rs",
"sha256": "79e81fc20d79ecf8efe7601f1eb43ad6b460641290f96a26c2c24038aa42761f",
"language": "Rust",
"lines": 18,
"truncated": false,
"block": 1,
"row": 10648
},
{
"path": "lib/rust/cr_ana/src/louvain.rs",
"sha256": "4ec07119452af0aed0017f9b077eb1a87a3ae14578e4a22e761d16a6ba4b0123",
"language": "Rust",
"lines": 137,
"truncated": false,
"block": 1,
"row": 10831
},
{
"path": "lib/rust/cr_ana/src/pca.rs",
"sha256": "eb56b33c23db7820eaf39b43075a44833c7756da3eadcc0047f537a5f085542c",
"language": "Rust",
"lines": 369,
"truncated": false,
"block": 1,
"row": 10991
},
{
"path": "lib/rust/cr_ana/src/stage_testing.rs",
"sha256": "c2767e129e47541172714e578259fca869a7d05359c7d388f2c8610a4b68b986",
"language": "Rust",
"lines": 206,
"truncated": false,
"block": 1,
"row": 10905
},
{
"path": "lib/rust/cr_ana/src/stages/assign_low_umi_cells.rs",
"sha256": "3764d2fd3409367887116707e9baf8bac3ce043986fd9e6b58ae9298e83ddd24",
"language": "Rust",
"lines": 246,
"truncated": false,
"block": 1,
"row": 10959
},
{
"path": "lib/rust/cr_ana/src/stages/diff_exp_stage.rs",
"sha256": "1138486f838d8b269915debc5d398087605fcae332b2db344f06c40161094601",
"language": "Rust",
"lines": 269,
"truncated": false,
"block": 1,
"row": 10949
},
{
"path": "lib/rust/cr_ana/src/stages/graph_clustering.rs",
"sha256": "ff4fa07c472b97f2e2bccfe88ebfa137b7e5bfbcbc7d2e7471dd64320d426cba",
"language": "Rust",
"lines": 308,
"truncated": false,
"block": 1,
"row": 10962
},
{
"path": "lib/rust/cr_ana/src/stages/hierarchical_clustering.rs",
"sha256": "5ec75d02a534af9c38489b0b39ec5b8f8720ae393a22618b624948027366151b",
"language": "Rust",
"lines": 182,
"truncated": false,
"block": 1,
"row": 10894
},
{
"path": "lib/rust/cr_ana/src/stages/mod.rs",
"sha256": "2abdef03b6671c3c82e19f022f7befa49cbbda03ba1e700d71060b9095268a75",
"language": "Rust",
"lines": 11,
"truncated": false,
"block": 1,
"row": 10634
},
{
"path": "lib/rust/cr_ana/src/stages/pca.rs",
"sha256": "a3fcb7fa6435bf5f83df4da96685fd2e9e8c0699f9911e5aec876268eeda0f55",
"language": "Rust",
"lines": 178,
"truncated": false,
"block": 1,
"row": 10865
},
{
"path": "lib/rust/cr_ana/src/stages/pca2.rs",
"sha256": "a0db1fd1463daa090f7acc1dff849c441e29bbe4e44ff4f4bab7f5af88ca7f4c",
"language": "Rust",
"lines": 122,
"truncated": false,
"block": 1,
"row": 10798
},
{
"path": "lib/rust/cr_ana/src/stages/tsne.rs",
"sha256": "a6a586ed59b4bb5612578ea251bee17a09ccdcec1363353a80607167a0dc3fb7",
"language": "Rust",
"lines": 212,
"truncated": false,
"block": 1,
"row": 10904
},
{
"path": "lib/rust/cr_ana/src/stages/umap.rs",
"sha256": "a9c917b3ab6dbff5bb75376c08b455da732fbce6b26660ab0c1354a865d49d27",
"language": "Rust",
"lines": 181,
"truncated": false,
"block": 1,
"row": 10871
},
{
"path": "lib/rust/cr_ana/src/test_pipeline.rs",
"sha256": "f6cd017e71f1f870f88d6bcf27704661b74ea90f6024f7ab884007e65c9b757d",
"language": "Rust",
"lines": 93,
"truncated": false,
"block": 1,
"row": 10753
},
{
"path": "lib/rust/cr_ana/src/types.rs",
"sha256": "c39ef8975f6771c2aec4aee57a87be8ce4b8ab5a49a4c9828be62fe4d62c5792",
"language": "Rust",
"lines": 264,
"truncated": false,
"block": 1,
"row": 10919
},
{
"path": "lib/rust/cr_bam/src/bam.rs",
"sha256": "a6dcabc0ab3f964759494fc3405b24ebc69f09e453e5c5108b5e44a50e2d4002",
"language": "Rust",
"lines": 205,
"truncated": false,
"block": 1,
"row": 10886
},
{
"path": "lib/rust/cr_bam/src/bam_tags.rs",
"sha256": "f2d545c7d87bdef17bc8c92b3774f9f468077b8fb16df61b219845f4cf9bdda5",
"language": "Rust",
"lines": 63,
"truncated": false,
"block": 1,
"row": 10735
},
{
"path": "lib/rust/cr_bam/src/constants.rs",
"sha256": "b275f770a6c96aa274c3e334f19a3709e69bdc151bbe2603b5d189789e01801e",
"language": "Rust",
"lines": 11,
"truncated": false,
"block": 1,
"row": 10656
},
{
"path": "lib/rust/cr_bam/src/lib.rs",
"sha256": "6ebc9883d036bfd3395683f1a0640ffad26b2115e5df6d5af54769a0556da47d",
"language": "Rust",
"lines": 6,
"truncated": false,
"block": 1,
"row": 10628
},
{
"path": "lib/rust/cr_h5/src/compare.rs",
"sha256": "ccab8c4f1e9ce199e0ae0c434eb19d25d1f2b8dc39280f68c7af2dd3fcc29a26",
"language": "Rust",
"lines": 366,
"truncated": false,
"block": 1,
"row": 10980
},
{
"path": "lib/rust/cr_h5/src/count_matrix.rs",
"sha256": "ae333e111a1a2f1dbc6e2a6bd812607a0aed2f601a74c05870a7ad1a670c9be9",
"language": "Rust",
"lines": 820,
"truncated": false,
"block": 1,
"row": 11065
},
{
"path": "lib/rust/cr_h5/src/feature_reference_io.rs",
"sha256": "3ef69ef7909c2996a397da9fd717c70c52f8f61196ffa61155e671ce573bf5ed",
"language": "Rust",
"lines": 539,
"truncated": false,
"block": 1,
"row": 11022
},
{
"path": "lib/rust/cr_h5/src/iter.rs",
"sha256": "6e5ba1e54a7153cf4fdd785dd00019e68a0570e22e4d698de5c19d35e3c15095",
"language": "Rust",
"lines": 256,
"truncated": false,
"block": 1,
"row": 10911
},
{
"path": "lib/rust/cr_h5/src/lib.rs",
"sha256": "edd7501168f429ddcdcc1c7b18eee053911e7124468da3f9e2c6a419864d5178",
"language": "Rust",
"lines": 164,
"truncated": false,
"block": 1,
"row": 10836
},
{
"path": "lib/rust/cr_h5/src/molecule_info.rs",
"sha256": "e4de03ce619cc33bf60f075ddc7a5b1c22ee04246a7dbb01a6c47a7c33db6d0a",
"language": "Rust",
"lines": 1586,
"truncated": false,
"block": 1,
"row": 11088
},
{
"path": "lib/rust/cr_h5/src/probe_reference_io.rs",
"sha256": "ee9296aeb39eb497a79c71c88a7a4031f0c4a3d8c4d119fdf0700eb13c2a4c42",
"language": "Rust",
"lines": 198,
"truncated": false,
"block": 1,
"row": 10891
},
{
"path": "lib/rust/cr_lib/src/align_and_count_metrics.rs",
"sha256": "6eb35eb5ff4042866eeefb828cd5c6a5acaf7284d2f43528fbafb961c2ed6481",
"language": "Rust",
"lines": 140,
"truncated": false,
"block": 1,
"row": 10837
},
{
"path": "lib/rust/cr_lib/src/align_homopolymer.rs",
"sha256": "be5d506ddbb18098f75504f0f082696060c8b781767ddb0326c393cbed949f19",
"language": "Rust",
"lines": 105,
"truncated": false,
"block": 1,
"row": 10783
},
{
"path": "lib/rust/cr_lib/src/align_metrics.rs",
"sha256": "3e72a926d35b7e745ee90004e43208afddb31a96f43a8e3e51b07e265271b5ac",
"language": "Rust",
"lines": 1167,
"truncated": false,
"block": 1,
"row": 11075
},
{
"path": "lib/rust/cr_lib/src/aligner.rs",
"sha256": "ac5751c79a4ddc8372ef1fb0c058f7ae2504adf44b8cc01d97877ec09e7e981c",
"language": "Rust",
"lines": 853,
"truncated": false,
"block": 1,
"row": 11062
},
{
"path": "lib/rust/cr_lib/src/barcode_correction_metrics.rs",
"sha256": "46476b90fc80d0e8950fde9c87a8cca35734fd2c2376728b6ae5ecdef7d90b84",
"language": "Rust",
"lines": 118,
"truncated": false,
"block": 1,
"row": 10843
},
{
"path": "lib/rust/cr_lib/src/barcode_overlap.rs",
"sha256": "6d147eda363327e7ecb198a9c3c038e723774350fbe53377c89fcd32a96e5e80",
"language": "Rust",
"lines": 147,
"truncated": false,
"block": 1,
"row": 10847
},
{
"path": "lib/rust/cr_lib/src/barcode_sort.rs",
"sha256": "47a50f69aa9ef2a4e144fb738b5e8fd72db8648a6ad42a10c920e2f515a9675c",
"language": "Rust",
"lines": 744,
"truncated": false,
"block": 1,
"row": 11052
},
{
"path": "lib/rust/cr_lib/src/bin/cr_lib.rs",
"sha256": "5cec1a13c7773607560125d7ef27f1a4037c0fbdbb1fe7d5e98ecdbab483d1c0",
"language": "Rust",
"lines": 141,
"truncated": false,
"block": 1,
"row": 10822
},
{
"path": "lib/rust/cr_lib/src/cell_annotation_ws_parameters.rs",
"sha256": "e4e154bd407383c56702558e9d26a4bb90cd698432bce7462e14cd8c1d843825",
"language": "Rust",
"lines": 626,
"truncated": false,
"block": 1,
"row": 11060
},
{
"path": "lib/rust/cr_lib/src/crispr_perturbation_stats.rs",
"sha256": "d09e8fb779a8097aae5daa1cf73ab675ca1c68bab3704cd1864dc40e559e1a5b",
"language": "Rust",
"lines": 314,
"truncated": false,
"block": 1,
"row": 10996
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/adapter_filter.rs",
"sha256": "fbd565b8745bbfed7a5e1dcc50da2172976ad4d6d9adda6173073476a1c64289",
"language": "Rust",
"lines": 254,
"truncated": false,
"block": 1,
"row": 10928
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/chemistry_filter.rs",
"sha256": "2e5a2359cb2e6bbd11ad7e0527289024c2dea713cc2e3833db4ae7092750e318",
"language": "Rust",
"lines": 235,
"truncated": false,
"block": 1,
"row": 10927
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/errors.rs",
"sha256": "118c48fbd1d5c203bfc28617e4e1a5c5ae221414835ede76a8b527b8c459e1d9",
"language": "Rust",
"lines": 275,
"truncated": false,
"block": 1,
"row": 10987
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/identity_check.rs",
"sha256": "e4b5930ecc13be167bd34d22d8a312df04ca2b846d4f590e742e72d49bc81970",
"language": "Rust",
"lines": 81,
"truncated": false,
"block": 1,
"row": 10747
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/length_filter.rs",
"sha256": "eda7a6f80a381e8d3ed5f17a46b592600149e81c6a861ecfff8b9961c0e6202d",
"language": "Rust",
"lines": 191,
"truncated": false,
"block": 1,
"row": 10880
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/mapping_filter.rs",
"sha256": "1bd5f4492303296dd53f253d16381b2eead9124e6e5c763c86af19b00fe42ffb",
"language": "Rust",
"lines": 178,
"truncated": false,
"block": 1,
"row": 10888
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/mod.rs",
"sha256": "f0383c4cebb100f2f4fbcaf97f1fbf78c9e6657a43c6845199dcbfab114802e1",
"language": "Rust",
"lines": 12,
"truncated": false,
"block": 1,
"row": 10645
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/probe_bc_check.rs",
"sha256": "521b60a050ec82cb3a767ca2aa70f94a7c8d1a49bdf45b12f9de44a0bc7da533",
"language": "Rust",
"lines": 145,
"truncated": false,
"block": 1,
"row": 10884
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/probe_bc_pairing.rs",
"sha256": "d4707876b10440ce56e3aba3af3f0957f8814253af28d03cead1cde4dc6a7f1f",
"language": "Rust",
"lines": 230,
"truncated": false,
"block": 1,
"row": 10930
},
{
"path": "lib/rust/cr_lib/src/detect_chemistry/whitelist_filter.rs",
"sha256": "a65945a4fe1db40b59723dee5174bc06baee78ad63a8b3717018d13645a6e400",
"language": "Rust",
"lines": 213,
"truncated": false,
"block": 1,
"row": 10914
},
{
"path": "lib/rust/cr_lib/src/env.rs",
"sha256": "850baa514b9e839233f992fa64338ba4287f37c205489b2791f5e3154543acde",
"language": "Rust",
"lines": 39,
"truncated": false,
"block": 1,
"row": 10690
},
{
"path": "lib/rust/cr_lib/src/fit_piecewise_linear_model.rs",
"sha256": "69d3a2e3010082b6b966abbf9dbc7e2bca185d94aa957381f6acddeeca91fde3",
"language": "Rust",
"lines": 249,
"truncated": false,
"block": 1,
"row": 10945
},
{
"path": "lib/rust/cr_lib/src/gdna_utils.rs",
"sha256": "ac3e615cf1abf67078f15860c6904f88a31407652e7548a9a63a9c1b1ff2ef24",
"language": "Rust",
"lines": 486,
"truncated": false,
"block": 1,
"row": 11033
},
{
"path": "lib/rust/cr_lib/src/io.rs",
"sha256": "52570f75abd2ace84ac0ca52c6a018012895f2b8694ea0c8493bffd078ea2798",
"language": "Rust",
"lines": 18,
"truncated": false,
"block": 1,
"row": 10660
},
{
"path": "lib/rust/cr_lib/src/lib.rs",
"sha256": "1a5c37ad0aa678cdb77cd5d59f8419ad5cbd27f72fc99e84391ae8a289fb8c09",
"language": "Rust",
"lines": 94,
"truncated": false,
"block": 1,
"row": 10744
},
{
"path": "lib/rust/cr_lib/src/make_shard_metrics.rs",
"sha256": "da7b07737521b0071e94732d9fae2adbad60cb949f60ccbd6ff98ca3f29a1406",
"language": "Rust",
"lines": 547,
"truncated": false,
"block": 1,
"row": 11039
},
{
"path": "lib/rust/cr_lib/src/minimap2.rs",
"sha256": "0f9d21ab4f3c422b1b1d1a48f37410fc621d97f0025922a2bce02834f92142d6",
"language": "Rust",
"lines": 90,
"truncated": false,
"block": 1,
"row": 10760
},
{
"path": "lib/rust/cr_lib/src/parquet_file.rs",
"sha256": "c71ce26f9cb56f9a1055280e770c7803e6baf41ded7948825cd96fe6f103fc79",
"language": "Rust",
"lines": 441,
"truncated": false,
"block": 1,
"row": 10995
},
{
"path": "lib/rust/cr_lib/src/preflight.rs",
"sha256": "eeec9af2174b9711bf0396be2c9794d556732e377db9fc34c2993a5dc0a73453",
"language": "Rust",
"lines": 844,
"truncated": false,
"block": 1,
"row": 11067
},
{
"path": "lib/rust/cr_lib/src/probe_barcode_matrix.rs",
"sha256": "634e75b1480fc89f86ca12b718c91b9191aabd788149febc231e03e62b5db23b",
"language": "Rust",
"lines": 307,
"truncated": false,
"block": 1,
"row": 10978
},
{
"path": "lib/rust/cr_lib/src/read_level_multiplexing.rs",
"sha256": "a3897273c72a91e30e668901ddeca24887760758d296231e4127a01d775ef6f0",
"language": "Rust",
"lines": 113,
"truncated": false,
"block": 1,
"row": 10809
},
{
"path": "lib/rust/cr_lib/src/stages/align_and_count.rs",
"sha256": "b923f86815003586fc56d014c3e21411c854f2e0432cf604016f11d37ed48692",
"language": "Rust",
"lines": 1303,
"truncated": false,
"block": 1,
"row": 11084
},
{
"path": "lib/rust/cr_lib/src/stages/barcode_correction.rs",
"sha256": "b85948c1d6e57f1db382a5221137e78cbba58f90137aa51f13f17edfc2554e49",
"language": "Rust",
"lines": 673,
"truncated": false,
"block": 1,
"row": 11059
},
{
"path": "lib/rust/cr_lib/src/stages/build_per_sample_vdj_ws_contents.rs",
"sha256": "7a9bd03e8eb148a93e6e908b7a8688276d1895b1d80f674a20db4a5b5a1febea",
"language": "Rust",
"lines": 411,
"truncated": false,
"block": 1,
"row": 11010
},
{
"path": "lib/rust/cr_lib/src/stages/call_tags_genetic.rs",
"sha256": "92e9b9a91dd44298d5e406fbfadc55227e00553a8264659d82ca7f6dd2967df9",
"language": "Rust",
"lines": 133,
"truncated": false,
"block": 1,
"row": 10833
},
{
"path": "lib/rust/cr_lib/src/stages/call_tags_read_level.rs",
"sha256": "62d6a553c784ee469ecb0421371a6115843c07fc3e81fb77f2a4b9b2ab4831e2",
"language": "Rust",
"lines": 660,
"truncated": false,
"block": 1,
"row": 11054
},
{
"path": "lib/rust/cr_lib/src/stages/check_barcodes_compatibility.rs",
"sha256": "3c558e392848c8c073f206f7b4cf85cd5d6538309657378297460bb6ab57fccf",
"language": "Rust",
"lines": 588,
"truncated": false,
"block": 1,
"row": 11046
},
{
"path": "lib/rust/cr_lib/src/stages/check_barcodes_compatibility_vdj.rs",
"sha256": "08b59db21d55331ae11c12e8e8c47ccdee2b018cac5c1bdd852b9cda700c3612",
"language": "Rust",
"lines": 514,
"truncated": false,
"block": 1,
"row": 11038
},
{
"path": "lib/rust/cr_lib/src/stages/check_single_beam_mode.rs",
"sha256": "394792a5440ede70958e0f92db49b99ee83709a47eefbe9f007f8a59b4a64d39",
"language": "Rust",
"lines": 38,
"truncated": false,
"block": 1,
"row": 10686
},
{
"path": "lib/rust/cr_lib/src/stages/collate_metrics.rs",
"sha256": "5eb1759d6ab96d53ae8cadb046262c41f08383c1eec56f550808bccd27d74b68",
"language": "Rust",
"lines": 466,
"truncated": false,
"block": 1,
"row": 11018
},
{
"path": "lib/rust/cr_lib/src/stages/collate_probe_metrics.rs",
"sha256": "d78021c8bce652783a16e561a933326be20497fa74d789c84b907b78aa4abb1b",
"language": "Rust",
"lines": 145,
"truncated": false,
"block": 1,
"row": 10854
},
{
"path": "lib/rust/cr_lib/src/stages/combine_chemistry_defs.rs",
"sha256": "25805eebee4204087b34f1978abc9e8c60fe2a1e1bba2dddfedb66d18aaf164c",
"language": "Rust",
"lines": 77,
"truncated": false,
"block": 1,
"row": 10749
},
{
"path": "lib/rust/cr_lib/src/stages/compute_antigen_vdj_metrics.rs",
"sha256": "6ee27f9ea12d14ef026ecb11dbcee695580ac05c9bfdba71f4b9b6dbb680643b",
"language": "Rust",
"lines": 196,
"truncated": false,
"block": 1,
"row": 10895
},
{
"path": "lib/rust/cr_lib/src/stages/compute_subseq_metrics.rs",
"sha256": "74a2e34f869b5624bd576b55bbba18345a027b8d3ef49616e148a70d8cf13c01",
"language": "Rust",
"lines": 672,
"truncated": false,
"block": 1,
"row": 11049
},
{
"path": "lib/rust/cr_lib/src/stages/copy_chemistry_spec.rs",
"sha256": "4bafb4fb2f9128a3abf780865d1791bc9a0f2968e717e52087d66a4bf9badc27",
"language": "Rust",
"lines": 71,
"truncated": false,
"block": 1,
"row": 10746
},
{
"path": "lib/rust/cr_lib/src/stages/count_alleles.rs",
"sha256": "5d0263ca0e65caa2752bf61c78ec9878732f850978c55143e553c3c381ea1587",
"language": "Rust",
"lines": 245,
"truncated": false,
"block": 1,
"row": 10931
},
{
"path": "lib/rust/cr_lib/src/stages/create_multi_graph.rs",
"sha256": "31e88b28cc37693c242a4b3a9f827b5129aa70b308d92ae0804369c87faa78bd",
"language": "Rust",
"lines": 51,
"truncated": false,
"block": 1,
"row": 10715
},
{
"path": "lib/rust/cr_lib/src/stages/demux_probe_bc_matrix.rs",
"sha256": "295c0245891bc864bbeec28a0f5913e86196996e1dcb6b181718c219729a538f",
"language": "Rust",
"lines": 173,
"truncated": false,
"block": 1,
"row": 10882
},
{
"path": "lib/rust/cr_lib/src/stages/detect_chemistry.rs",
"sha256": "6bea02dc6d763a3614111e9d76398e005ab0fc162e3d259d859077d6d10f31e2",
"language": "Rust",
"lines": 2699,
"truncated": false,
"block": 1,
"row": 11096
},
{
"path": "lib/rust/cr_lib/src/stages/detect_chemistry_test.rs",
"sha256": "b7ff50d794cc13604c2b7f4dbb5aeb006a0adba7891b8be525e989e0e4a9a204",
"language": "Rust",
"lines": 136,
"truncated": false,
"block": 1,
"row": 10818
},
{
"path": "lib/rust/cr_lib/src/stages/detect_vdj_receptor.rs",
"sha256": "110293cfb244c52a7ef3689228739a0638184474a70524b57284488ba6bd643e",
"language": "Rust",
"lines": 469,
"truncated": false,
"block": 1,
"row": 11027
},
{
"path": "lib/rust/cr_lib/src/stages/expect_single_barcode_whitelist.rs",
"sha256": "6654fc0dc53fdecb5b4828e75b93dde43601ff5d5f7d4ff2a46d8715faa3d02e",
"language": "Rust",
"lines": 41,
"truncated": false,
"block": 1,
"row": 10684
},
{
"path": "lib/rust/cr_lib/src/stages/extract_single_chemistry.rs",
"sha256": "e0009bf66640bc3563974d77c3b1be4ff15e460f457f98e7c2f01fe94e55b6b7",
"language": "Rust",
"lines": 51,
"truncated": false,
"block": 1,
"row": 10713
},
{
"path": "lib/rust/cr_lib/src/stages/generate_cas_metrics.rs",
"sha256": "befd66fa6dba8abc3ebf7276e341b763e4ee41ef1f9fa4a2e6ca9d12fa6dcf49",
"language": "Rust",
"lines": 87,
"truncated": false,
"block": 1,
"row": 10785
},
{
"path": "lib/rust/cr_lib/src/stages/generate_cas_websummary.rs",
"sha256": "98f563d084fc5aaa97a90e4ce8ba810e5e6ecf0a920d5561af20239d53f8d3e9",
"language": "Rust",
"lines": 348,
"truncated": false,
"block": 1,
"row": 11001
},
{
"path": "lib/rust/cr_lib/src/stages/get_chemistry_def.rs",
"sha256": "5d4bbb3fd312f41e1cb47dcc181345fe80f2b7d7431216bb6f7308d88c74cd3e",
"language": "Rust",
"lines": 43,
"truncated": false,
"block": 1,
"row": 10689
},
{
"path": "lib/rust/cr_lib/src/stages/get_gdna_metrics.rs",
"sha256": "96d49ceaf26e9b3ad9493b2bcdb78c1f0f66b1bc6a79e255c8c4125236fa753c",
"language": "Rust",
"lines": 73,
"truncated": false,
"block": 1,
"row": 10739
},
{
"path": "lib/rust/cr_lib/src/stages/logic_not.rs",
"sha256": "e076abea783f38a2a2d116675f0752e5986b2348909bb88fcd4a0bd1e7588e17",
"language": "Rust",
"lines": 37,
"truncated": false,
"block": 1,
"row": 10679
},
{
"path": "lib/rust/cr_lib/src/stages/make_correction_map.rs",
"sha256": "732db41c99406eb543f5ca4ecaa1514fa48ec88a5660578a20f620605deffa2a",
"language": "Rust",
"lines": 143,
"truncated": false,
"block": 1,
"row": 10840
},
{
"path": "lib/rust/cr_lib/src/stages/make_shard.rs",
"sha256": "6b0fb45a46729ac71b080d6f00bab285194c8b7d58a7fdab7100467f62ecc946",
"language": "Rust",
"lines": 673,
"truncated": false,
"block": 1,
"row": 11053
},
{
"path": "lib/rust/cr_lib/src/stages/merge_metrics.rs",
"sha256": "85ce7b022658c9bc5ad4943fae24d40c4538868f42dd804ceb1d7e3ffae675ba",
"language": "Rust",
"lines": 46,
"truncated": false,
"block": 1,
"row": 10694
},
{
"path": "lib/rust/cr_lib/src/stages/merge_metrics_maps.rs",
"sha256": "1d79e015fc62fff8a7b7d1dd4ece95df3be6f9de4120c02e1fc5ba8edd8544d9",
"language": "Rust",
"lines": 56,
"truncated": false,
"block": 1,
"row": 10707
},
{
"path": "lib/rust/cr_lib/src/stages/merge_vdj_cell_barcodes.rs",
"sha256": "e87a8bd8c7a7c408886ade528c56f1f92e4a8835c3fe7b6790c1e627f4863b29",
"language": "Rust",
"lines": 125,
"truncated": false,
"block": 1,
"row": 10835
},
{
"path": "lib/rust/cr_lib/src/stages/mod.rs",
"sha256": "fd2f8f157bdb1521437a202404ba17a134ebb212aaaed2a2ec84136c54b82226",
"language": "Rust",
"lines": 121,
"truncated": false,
"block": 1,
"row": 10826
},
{
"path": "lib/rust/cr_lib/src/stages/multi_preflight.rs",
"sha256": "d2b77fbb217e2d87256fb0af4a9d90f1aafdb273b68ba633a2ddf5c2f17de136",
"language": "Rust",
"lines": 445,
"truncated": false,
"block": 1,
"row": 11007
},
{
"path": "lib/rust/cr_lib/src/stages/multi_setup_chunks.rs",
"sha256": "446b79f68d43827e0dc1355b1077e8f25604af0352658028c5d2c2850575efd6",
"language": "Rust",
"lines": 136,
"truncated": false,
"block": 1,
"row": 10838
},
{
"path": "lib/rust/cr_lib/src/stages/parse_multi_config.rs",
"sha256": "d0326844cb762b3e3418bea7716fdb3f65eb52d96b18ba3357fe28142cce3b78",
"language": "Rust",
"lines": 1003,
"truncated": false,
"block": 1,
"row": 11072
},
{
"path": "lib/rust/cr_lib/src/stages/pick_beam_analyzer.rs",
"sha256": "e6df923024180b29582ec74f462a5d8a70f6b0ebd0b86f17b7ce77f598b06a21",
"language": "Rust",
"lines": 126,
"truncated": false,
"block": 1,
"row": 10844
},
{
"path": "lib/rust/cr_lib/src/stages/rust_bridge.rs",
"sha256": "4c2de35468efdbd0a5308642dd71bb5743162eb9ab1df7377806d98adc3f2f15",
"language": "Rust",
"lines": 225,
"truncated": false,
"block": 1,
"row": 10920
},
{
"path": "lib/rust/cr_lib/src/stages/setup_reference_info.rs",
"sha256": "e88e618336e6c77cffb61ede0ff3b7b6b493876b6b15f5dce41dad75afa4e2c4",
"language": "Rust",
"lines": 126,
"truncated": false,
"block": 1,
"row": 10811
},
{
"path": "lib/rust/cr_lib/src/stages/setup_vdj_analysis.rs",
"sha256": "ccdbf0114c66102c99f8080a78ec8f9016cb4277defd911f838677f10422d7c9",
"language": "Rust",
"lines": 197,
"truncated": false,
"block": 1,
"row": 10899
},
{
"path": "lib/rust/cr_lib/src/stages/setup_vdj_demux.rs",
"sha256": "e60a7d3b58cb41ef5061bca6f7ae2903eb010a41b5aa90021d198f36794a8ce4",
"language": "Rust",
"lines": 101,
"truncated": false,
"block": 1,
"row": 10799
},
{
"path": "lib/rust/cr_lib/src/stages/split_perturbation_matrix.rs",
"sha256": "d7ec6970f8ead69848bf58e72362b8da59b98a0815c0c54bd7c0ea5f5f55d4a6",
"language": "Rust",
"lines": 584,
"truncated": false,
"block": 1,
"row": 11050
},
{
"path": "lib/rust/cr_lib/src/stages/stubs.rs",
"sha256": "743fc03f23fc73dd7cbc6f9d54821e5f643ea0b11f2487d3b6fe5c0837d16da7",
"language": "Rust",
"lines": 21,
"truncated": false,
"block": 1,
"row": 10658
},
{
"path": "lib/rust/cr_lib/src/stages/summarize_matrix_dims.rs",
"sha256": "c6cc4098048025e14d340261dc186b4d0511384821fdfad8181109dee240ee5a",
"language": "Rust",
"lines": 90,
"truncated": false,
"block": 1,
"row": 10774
},
{
"path": "lib/rust/cr_lib/src/stages/write_barcode_index.rs",
"sha256": "fb0f34568cd62aee64e7353ef68e9977b443ab698a27fb2fe1c6d2be4cd25ad9",
"language": "Rust",
"lines": 72,
"truncated": false,
"block": 1,
"row": 10732
},
{
"path": "lib/rust/cr_lib/src/stages/write_barcode_summary.rs",
"sha256": "4e82aed4e5455ba0388f463d178bca25cb19ef4e0a846268f2cd7b6af97dd1c8",
"language": "Rust",
"lines": 419,
"truncated": false,
"block": 1,
"row": 11009
},
{
"path": "lib/rust/cr_lib/src/stages/write_crispr_only_matrix.rs",
"sha256": "40b0ea2ecc9904636dfc2dac5f6c8c2320d438adb2e335f88df2ca3f65def160",
"language": "Rust",
"lines": 210,
"truncated": false,
"block": 1,
"row": 10951
},
{
"path": "lib/rust/cr_lib/src/stages/write_gene_index.rs",
"sha256": "49dadf6091fa772937891e8fee88d3d413441b0452470328a5af4152fd01ed8f",
"language": "Rust",
"lines": 40,
"truncated": false,
"block": 1,
"row": 10685
},
{
"path": "lib/rust/cr_lib/src/stages/write_h5_matrix.rs",
"sha256": "bbf0c2ef61736b5fef375e5edfeaf6904529a6efa344e58b1b448dac699ace48",
"language": "Rust",
"lines": 81,
"truncated": false,
"block": 1,
"row": 10752
},
{
"path": "lib/rust/cr_lib/src/stages/write_matrix_market.rs",
"sha256": "3abdc8c4893e781a29f55e9b6b4daf5fcd84d6f482a297e32f03207e1a31481c",
"language": "Rust",
"lines": 190,
"truncated": false,
"block": 1,
"row": 10873
},
{
"path": "lib/rust/cr_lib/src/stages/write_minimap_index.rs",
"sha256": "16340ca04ab8178ca4e8565fff951366b9d5f85e5c55d25547b5a95afc3e8536",
"language": "Rust",
"lines": 74,
"truncated": false,
"block": 1,
"row": 10742
},
{
"path": "lib/rust/cr_lib/src/stages/write_molecule_info.rs",
"sha256": "fd8de8c56599d5fe93ad17c471f7588d77b244b181dca6c17bd26bb3b7693b46",
"language": "Rust",
"lines": 706,
"truncated": false,
"block": 1,
"row": 11056
},
{
"path": "lib/rust/cr_lib/src/stages/write_multi_web_summary.rs",
"sha256": "502d27d0b74b44e754374710c06cb87dfdca58b80ca6e564db1c33c7834e09b7",
"language": "Rust",
"lines": 2735,
"truncated": false,
"block": 1,
"row": 11097
},
{
"path": "lib/rust/cr_lib/src/stages/write_pos_bam.rs",
"sha256": "06d9eeae56d73f798e0a3e9748c5fc01ccc9594bfa27548651da8d18637330e5",
"language": "Rust",
"lines": 569,
"truncated": false,
"block": 1,
"row": 11034
},
{
"path": "lib/rust/cr_lib/src/testing/correctness.rs",
"sha256": "82315a7253de6b0b968ab4897fa7dbfe62f6fdd230a27685e33e5ca87c1f7bfb",
"language": "Rust",
"lines": 322,
"truncated": false,
"block": 1,
"row": 10971
},
{
"path": "lib/rust/cr_lib/src/testing/mod.rs",
"sha256": "7031497c85e290397c920409d5236fd5d5d072193305a5a5dcfc3c828deea4ec",
"language": "Rust",
"lines": 9,
"truncated": false,
"block": 1,
"row": 10638
},
{
"path": "lib/rust/cr_lib/src/testing/tools.rs",
"sha256": "9535d32cbec5d6d48f89a1e606e119acba5dd14e2b51c7133c7d96e6768edf81",
"language": "Rust",
"lines": 139,
"truncated": false,
"block": 1,
"row": 10824
},
{
"path": "lib/rust/cr_lib/src/types.rs",
"sha256": "9f2600153ff2045e45142658019ac3bc7b9b63a56d968d03ea11c5961ad1e0e7",
"language": "Rust",
"lines": 182,
"truncated": false,
"block": 1,
"row": 10881
},
{
"path": "lib/rust/cr_lib/src/utils.rs",
"sha256": "ad6ee291a2f0e8e92115024d9ce7e09392b002afb9d92759a3ec72c7cdcf7c47",
"language": "Rust",
"lines": 67,
"truncated": false,
"block": 1,
"row": 10727
},
{
"path": "lib/rust/cr_types/src/action_timer.rs",
"sha256": "021e671fcb765c88049945f466804978d61298fa1448c48f244afce36ca7cc9a",
"language": "Rust",
"lines": 101,
"truncated": false,
"block": 1,
"row": 10761
},
{
"path": "lib/rust/cr_types/src/aggr.rs",
"sha256": "bdff1709aef6101c68b9d46d66613856e23851c0706109287b896e81c0f45da0",
"language": "Rust",
"lines": 25,
"truncated": false,
"block": 1,
"row": 10667
},
{
"path": "lib/rust/cr_types/src/barcode_index.rs",
"sha256": "6cbbc4de0c5bb519e1d744f2f86b43c09c6bd023a11a2dc404ef663bb9d0f6f6",
"language": "Rust",
"lines": 603,
"truncated": false,
"block": 1,
"row": 11040
},
{
"path": "lib/rust/cr_types/src/cell_annotation.rs",
"sha256": "e8c324355cacf26361c70f2f51fceb9d0880bf8ec729427a14a8c53cb9ed4fbd",
"language": "Rust",
"lines": 47,
"truncated": false,
"block": 1,
"row": 10693
},
{
"path": "lib/rust/cr_types/src/chemistry/adapter.rs",
"sha256": "4c4f9dee1d5c257b26f4fb9638063561108ed51bb101273657181f899adcfc06",
"language": "Rust",
"lines": 233,
"truncated": false,
"block": 1,
"row": 10916
},
{
"path": "lib/rust/cr_types/src/chemistry/chemistry_defs.rs",
"sha256": "b4789b4e898f4263db3be31193be39e1c32bcbf2266e60d1f90b786a0a76d052",
"language": "Rust",
"lines": 79,
"truncated": false,
"block": 1,
"row": 10755
},
{
"path": "lib/rust/cr_types/src/chemistry/mod.rs",
"sha256": "4777e19aa037e64832efc4b170d4f8197c61c6e01b2edfdfdbc5861e5fda02ee",
"language": "Rust",
"lines": 2530,
"truncated": false,
"block": 1,
"row": 11095
},
{
"path": "lib/rust/cr_types/src/clonotype.rs",
"sha256": "307aaa5f5d25d7655ad2b273e3092f3d0045f0827c7f57c0b581cbe42fce958d",
"language": "Rust",
"lines": 117,
"truncated": false,
"block": 1,
"row": 10791
},
{
"path": "lib/rust/cr_types/src/constants.rs",
"sha256": "01f362e1217c190defe0795e16eab320f15a02f06843948d670e0c2ec49b3744",
"language": "Rust",
"lines": 12,
"truncated": false,
"block": 1,
"row": 10651
},
{
"path": "lib/rust/cr_types/src/csv_parser.rs",
"sha256": "ca8efcae47d561b551c75afd0374955013630e4fc64b0ebbad24b541ff4a2648",
"language": "Rust",
"lines": 247,
"truncated": false,
"block": 1,
"row": 10924
},
{
"path": "lib/rust/cr_types/src/filtered_barcodes.rs",
"sha256": "a469d1671cfce67ffbc7ac403dfd431b0a89e6729d0a275ce896be1d6c48d3d0",
"language": "Rust",
"lines": 58,
"truncated": false,
"block": 1,
"row": 10706
},
{
"path": "lib/rust/cr_types/src/in_flight.rs",
"sha256": "f2ebfd413f7b75d8e89a43beba46f7c471809afddc3a16fff5ec2a53e48c8a9d",
"language": "Rust",
"lines": 254,
"truncated": false,
"block": 1,
"row": 10901
},
{
"path": "lib/rust/cr_types/src/lib.rs",
"sha256": "b2cee88f88d050c73056ee04b7e72b4bcd9b13807ddf115d28f3be8c62a425ee",
"language": "Rust",
"lines": 115,
"truncated": false,
"block": 1,
"row": 10778
},
{
"path": "lib/rust/cr_types/src/mempool.rs",
"sha256": "c530ffa9e154458c329424e9715b12015a2f76e355bc0bbf526f600e218e4a9f",
"language": "Rust",
"lines": 61,
"truncated": false,
"block": 1,
"row": 10712
},
{
"path": "lib/rust/cr_types/src/metrics_file.rs",
"sha256": "b39e35ef0d8034c84bf7b1f6343610f941393dfa91a9738c29b3bb7617bf496d",
"language": "Rust",
"lines": 74,
"truncated": false,
"block": 1,
"row": 10734
},
{
"path": "lib/rust/cr_types/src/probe_set.rs",
"sha256": "7af3a22e700da3c94b4a411ca37eae7baeb123eda63e62abb83014f55a654c79",
"language": "Rust",
"lines": 2207,
"truncated": false,
"block": 1,
"row": 11094
},
{
"path": "lib/rust/cr_types/src/reference/feature_checker.rs",
"sha256": "d327b1a691c7a3f8d9c5a86e9ec9e6c5e09b5304b6b080059af7d4f4d9e8d851",
"language": "Rust",
"lines": 51,
"truncated": false,
"block": 1,
"row": 10708
},
{
"path": "lib/rust/cr_types/src/reference/feature_extraction.rs",
"sha256": "a2f2eae3bced6f5a07444237ae44c0186b085cc61008b871a17b6bec7dac2101",
"language": "Rust",
"lines": 784,
"truncated": false,
"block": 1,
"row": 11057
},
{
"path": "lib/rust/cr_types/src/reference/feature_reference.rs",
"sha256": "c6278093239011e01431a6f669304720998cf85d117f4a84a1e56a9faeb9c686",
"language": "Rust",
"lines": 1238,
"truncated": false,
"block": 1,
"row": 11083
},
{
"path": "lib/rust/cr_types/src/reference/genome_of_chrom.rs",
"sha256": "dc2f30d4d971305e4fdfd9a5123c69d75a9fb0228f0f2310ffe7213a02cae9a0",
"language": "Rust",
"lines": 49,
"truncated": false,
"block": 1,
"row": 10726
},
{
"path": "lib/rust/cr_types/src/reference/mod.rs",
"sha256": "d9133218395008402021869124962378f85ec94b801e44f9f613e835ce16ec83",
"language": "Rust",
"lines": 11,
"truncated": false,
"block": 1,
"row": 10647
},
{
"path": "lib/rust/cr_types/src/reference/probe_set_reference.rs",
"sha256": "0bbe145171ffa37a8e140c7f07d90457986dfba7ee606ae89fc2556753346ee1",
"language": "Rust",
"lines": 456,
"truncated": false,
"block": 1,
"row": 11020
},
{
"path": "lib/rust/cr_types/src/reference/reference_info.rs",
"sha256": "2677afde6fc6bf0a0f22bb9dccc74d4a042e72a2999097f9db9ce721f39a3fb8",
"language": "Rust",
"lines": 272,
"truncated": false,
"block": 1,
"row": 10958
},
{
"path": "lib/rust/cr_types/src/rna_read.rs",
"sha256": "e384504d1dfc09d846a5ba9669a9b7bc546578e79d45ca7b50ab564668d2f573",
"language": "Rust",
"lines": 1938,
"truncated": false,
"block": 1,
"row": 11093
},
{
"path": "lib/rust/cr_types/src/sample_def.rs",
"sha256": "6d23219eafe79b7617ae6fbaa48c3195785ddff68094c35de1788f03a1814fdb",
"language": "Rust",
"lines": 704,
"truncated": false,
"block": 1,
"row": 11045
},
{
"path": "lib/rust/cr_types/src/serde_helpers.rs",
"sha256": "415380b501ed4826a583dc0a7f2de822825cdd1adfb045da15b12520b3e30d89",
"language": "Rust",
"lines": 64,
"truncated": false,
"block": 1,
"row": 10710
},
{
"path": "lib/rust/cr_types/src/spill_vec.rs",
"sha256": "b335e01e834fb30cf95332eeaf70adc0dab63bae55c0461b1bee6f4d14491b81",
"language": "Rust",
"lines": 184,
"truncated": false,
"block": 1,
"row": 10866
},
{
"path": "lib/rust/cr_types/src/target_panel_summary.rs",
"sha256": "9d07d791764418e02f0dde460c4ec7d4590bab34c283379adea52d0e3ec973cf",
"language": "Rust",
"lines": 48,
"truncated": false,
"block": 1,
"row": 10704
},
{
"path": "lib/rust/cr_types/src/types.rs",
"sha256": "58a77d068ccf2dad5eb911881e4c3d5135bca4832b3ba4ccd63aed627f6b8440",
"language": "Rust",
"lines": 1400,
"truncated": false,
"block": 1,
"row": 11079
},
{
"path": "lib/rust/cr_types/src/utils.rs",
"sha256": "7090f27dacc61246733c9b893f3688a162f7de74cc35cd2da7e77dbeba55dfa6",
"language": "Rust",
"lines": 131,
"truncated": false,
"block": 1,
"row": 10817
},
{
"path": "lib/rust/cr_types/src/websummary.rs",
"sha256": "2e0bcaaa6ac06c6b7f09d5faebcf711d93dc11d8b60537a8047d1bb39bb7fc73",
"language": "Rust",
"lines": 323,
"truncated": false,
"block": 1,
"row": 10963
},
{
"path": "lib/rust/cr_vdj/src/bin/cr_vdj.rs",
"sha256": "58714e62c463d279343d8d5d1656e6da8402780ee056e96e1d2ccae6a5e50f08",
"language": "Rust",
"lines": 79,
"truncated": false,
"block": 1,
"row": 10758
},
{
"path": "lib/rust/cr_vdj/src/clonotype_hist.rs",
"sha256": "d2f7eac5b1cb6fe5c4132576b15ff32aa0c2812245483fb775d01ed03cc7c55a",
"language": "Rust",
"lines": 165,
"truncated": false,
"block": 1,
"row": 10892
},
{
"path": "lib/rust/cr_vdj/src/clonotype_table.rs",
"sha256": "b63cc0cccd93a5d31ac85e55dbb2740ea6a223e271cfd4b8cfe598a25eb7b105",
"language": "Rust",
"lines": 102,
"truncated": false,
"block": 1,
"row": 10801
},
{
"path": "lib/rust/cr_vdj/src/copy_vdj_reference.rs",
"sha256": "828b8a2d046bf821728596d11530cf58008b58b157171fa4b3880c9f6640c942",
"language": "Rust",
"lines": 137,
"truncated": false,
"block": 1,
"row": 10827
},
{
"path": "lib/rust/cr_vdj/src/create_barcode_csv.rs",
"sha256": "5e5cdd34edb2fed2ca02193a614c264f58b5e172873bb954c4f6e0f1181d849f",
"language": "Rust",
"lines": 216,
"truncated": false,
"block": 1,
"row": 10897
},
{
"path": "lib/rust/cr_vdj/src/lib.rs",
"sha256": "ebe46250e16b2e8e5236c3586875a789c81bd742bfe0abf911ed1c768c7799ce",
"language": "Rust",
"lines": 29,
"truncated": false,
"block": 1,
"row": 10671
},
{
"path": "lib/rust/cr_vdj/src/make_vdj_plots.rs",
"sha256": "ff52106e547b3dbbbd48a6adaa95bca0d51a9f0932e85e529fc886674a806aa6",
"language": "Rust",
"lines": 112,
"truncated": false,
"block": 1,
"row": 10815
},
{
"path": "lib/rust/cr_vdj/src/matrix.rs",
"sha256": "db960f39093166cdb37c62c5f68182983e21f1e482b9f51c34fded5767ec01f5",
"language": "Rust",
"lines": 106,
"truncated": false,
"block": 1,
"row": 10772
},
{
"path": "lib/rust/cr_vdj/src/summarize_vdj_filters.rs",
"sha256": "6f227b82342b87994f73ceba0fba9fa87c094b335f13eb8cdffca19e0985670a",
"language": "Rust",
"lines": 1145,
"truncated": false,
"block": 1,
"row": 11076
},
{
"path": "lib/rust/cr_websummary/src/alert.rs",
"sha256": "f80eb67fd79f250367100672f06be4e70643073485245307fae49212c0fef33a",
"language": "Rust",
"lines": 60,
"truncated": false,
"block": 1,
"row": 10725
},
{
"path": "lib/rust/cr_websummary/src/lib.rs",
"sha256": "1121846b3a3a4e8081ec183ea76d77001f1ff3e6a372ceafaa6a3490d565f4da",
"language": "Rust",
"lines": 568,
"truncated": false,
"block": 1,
"row": 11011
},
{
"path": "lib/rust/cr_websummary/src/multi/antigen.rs",
"sha256": "83288f792dcc5b3adba1f9c2f4aaa42bd0b5dae073fbc249ca017ec7ce5276da",
"language": "Rust",
"lines": 343,
"truncated": false,
"block": 1,
"row": 10972
},
{
"path": "lib/rust/cr_websummary/src/multi/metrics.rs",
"sha256": "93e13bac531d0413b315a5d8cbd3852717fed3c9887d6fdb4495155a3fa7ca5b",
"language": "Rust",
"lines": 610,
"truncated": false,
"block": 1,
"row": 11035
},
{
"path": "lib/rust/cr_websummary/src/multi/mod.rs",
"sha256": "f0a8122baec6f1525ca2822bf584c79349575277a003379da33d6b0d97412ab9",
"language": "Rust",
"lines": 8,
"truncated": false,
"block": 1,
"row": 10629
},
{
"path": "lib/rust/cr_websummary/src/multi/plots.rs",
"sha256": "e4953462562dca3827ff10d7b1b55445e10cc893b1a42f42296b513dd7ab891a",
"language": "Rust",
"lines": 383,
"truncated": false,
"block": 1,
"row": 11015
},
{
"path": "lib/rust/cr_websummary/src/multi/websummary.rs",
"sha256": "e75464c236cdeb1cafea24ec545bbcd8175ff9ac2de76cdaa18884f7f96a2d57",
"language": "Rust",
"lines": 1246,
"truncated": false,
"block": 1,
"row": 11082
},
{
"path": "lib/rust/cr_websummary/src/multi/websummary_vdj.rs",
"sha256": "182a3aa4c1a77b7e2bf18d7a861fc3d50efa0e26e9ace9e9bff8ad444b23a086",
"language": "Rust",
"lines": 118,
"truncated": false,
"block": 1,
"row": 10804
},
{
"path": "lib/rust/cr_websummary/src/value.rs",
"sha256": "cba07c50ed4b720feafbc3e4e754aa5aee61aaaed82dd7126e204a24e27efc35",
"language": "Rust",
"lines": 59,
"truncated": false,
"block": 1,
"row": 10703
},
{
"path": "lib/rust/cr_wrap/src/annotate.rs",
"sha256": "b73a9fabfbb41b1bb16e518be07b12fac07ad918335b3461bec53b37f295f08a",
"language": "Rust",
"lines": 28,
"truncated": false,
"block": 1,
"row": 10674
},
{
"path": "lib/rust/cr_wrap/src/arc/aggr.rs",
"sha256": "fd3ab09d4ab83dfe042803e4bfadce18189e7bdf8b95837c81ba9add5dbab932",
"language": "Rust",
"lines": 264,
"truncated": false,
"block": 1,
"row": 10948
},
{
"path": "lib/rust/cr_wrap/src/arc/count.rs",
"sha256": "8cb6197d318e3141810f508b115b0731880b9641f2a065c8ca04864b500140c0",
"language": "Rust",
"lines": 244,
"truncated": false,
"block": 1,
"row": 10950
},
{
"path": "lib/rust/cr_wrap/src/arc/mod.rs",
"sha256": "b04bcb18c075686e2af944a8334b62fbc8a665ed68e5a071da923e87afc39519",
"language": "Rust",
"lines": 8,
"truncated": false,
"block": 1,
"row": 10627
},
{
"path": "lib/rust/cr_wrap/src/arc/reanalyze.rs",
"sha256": "7df8f956989545f36f83f8e9a94cb5f31fe825e6be0b769d484dab43ad896980",
"language": "Rust",
"lines": 304,
"truncated": false,
"block": 1,
"row": 10964
},
{
"path": "lib/rust/cr_wrap/src/arc/testrun.rs",
"sha256": "fb6c418792344297bb25c54d78de20b48d24c35d8ff7bd801d0e0781b753f3b3",
"language": "Rust",
"lines": 82,
"truncated": false,
"block": 1,
"row": 10756
},
{
"path": "lib/rust/cr_wrap/src/arc/types.rs",
"sha256": "171d9c1d874496b5ce749b1c60ac46e7b66bc02a879084b4237142a11d5ed2c7",
"language": "Rust",
"lines": 75,
"truncated": false,
"block": 1,
"row": 10757
},
{
"path": "lib/rust/cr_wrap/src/bin/cellranger.rs",
"sha256": "7ee1f391d0dfcbebed5369c509a0ee5978c38ed2c1331de4e45b4f34d30ca322",
"language": "Rust",
"lines": 1010,
"truncated": false,
"block": 1,
"row": 11069
},
{
"path": "lib/rust/cr_wrap/src/chemistry_arg.rs",
"sha256": "5c722b7d612c5ce5455bf42533dfee6075ff0f0e8df9242aa97279b622eca52e",
"language": "Rust",
"lines": 100,
"truncated": false,
"block": 1,
"row": 10773
},
{
"path": "lib/rust/cr_wrap/src/cloud.rs",
"sha256": "be0f3c00539882ee303e75f30f4705a431542e71d77c9f7e6c9bd99dddd3d642",
"language": "Rust",
"lines": 60,
"truncated": false,
"block": 1,
"row": 10741
},
{
"path": "lib/rust/cr_wrap/src/create_bam_arg.rs",
"sha256": "3384d5d79912c1cc4efbfcf82b9a5b87575742e0becfda5084f8378b7d01c2c5",
"language": "Rust",
"lines": 55,
"truncated": false,
"block": 1,
"row": 10719
},
{
"path": "lib/rust/cr_wrap/src/env.rs",
"sha256": "37768a07e8325bb5923c9320598bf8e94edcb2ac8442ca7ea8c9b28f8eeb7aaf",
"language": "Rust",
"lines": 339,
"truncated": false,
"block": 1,
"row": 10965
},
{
"path": "lib/rust/cr_wrap/src/fastqs.rs",
"sha256": "9d003797370858b6e365241fb07af54ec2897402db4137085e4f787784a70082",
"language": "Rust",
"lines": 264,
"truncated": false,
"block": 1,
"row": 10937
},
{
"path": "lib/rust/cr_wrap/src/lib.rs",
"sha256": "3603bc7da48f5ba32141e81dbe6d021556432a4e173b649c43e7a0c0956c7fd0",
"language": "Rust",
"lines": 271,
"truncated": false,
"block": 1,
"row": 10915
},
{
"path": "lib/rust/cr_wrap/src/mkfastq.rs",
"sha256": "539367411ae2a73afe645f1c5c7c527e1c441cd16678ea97bdabc312543acb22",
"language": "Rust",
"lines": 44,
"truncated": false,
"block": 1,
"row": 10705
},
{
"path": "lib/rust/cr_wrap/src/mkref.rs",
"sha256": "773d5756f6d6f875da5329372aa80856ca08130eca1ec75e530aa78c22b04a2d",
"language": "Rust",
"lines": 321,
"truncated": false,
"block": 1,
"row": 10988
},
{
"path": "lib/rust/cr_wrap/src/mrp_args.rs",
"sha256": "9d8c7c09850109a60fc67e09a3c0ee3723309d5fc7b9bd4c966c3deecd0b7d32",
"language": "Rust",
"lines": 116,
"truncated": false,
"block": 1,
"row": 10806
},
{
"path": "lib/rust/cr_wrap/src/shared_cmd.rs",
"sha256": "548df9686bcbec34419c07b436c7623353890048795e67bdc3f9c76c5aaf9550",
"language": "Rust",
"lines": 127,
"truncated": false,
"block": 1,
"row": 10819
},
{
"path": "lib/rust/cr_wrap/src/telemetry.rs",
"sha256": "cd2750eb2b88b684fd33227767d225eef58e39fe7906f3a9a1bca36254c3f11e",
"language": "Rust",
"lines": 131,
"truncated": false,
"block": 1,
"row": 10829
},
{
"path": "lib/rust/cr_wrap/src/utils.rs",
"sha256": "6bb5562fd632e3b162d21d9c847753112bcb7e6fdb8ee83ac041f0f1f2a804c1",
"language": "Rust",
"lines": 205,
"truncated": false,
"block": 1,
"row": 10870
},
{
"path": "lib/rust/enclone_process/src/core/align_to_vdj_ref.rs",
"sha256": "90d0f950d80e3e4f95c5dd0df683053852dddee0e11a2ce172a90613cd0a4467",
"language": "Rust",
"lines": 363,
"truncated": false,
"block": 1,
"row": 10990
},
{
"path": "lib/rust/enclone_process/src/core/alignment.rs",
"sha256": "b5baa1962ccbb4c95628a35145ef75e4bc17128bdc4fdb5f935629841d7c7190",
"language": "Rust",
"lines": 657,
"truncated": false,
"block": 1,
"row": 11043
},
{
"path": "lib/rust/enclone_process/src/core/barcode_fate.rs",
"sha256": "386e90258f941e250179fcc2ce351dfdf3e64de4b6dc75710f43fa2fccea17dd",
"language": "Rust",
"lines": 72,
"truncated": false,
"block": 1,
"row": 10782
},
{
"path": "lib/rust/enclone_process/src/core/defs.rs",
"sha256": "111cc45e2126b12e5c37ddf6e329fb74cdc10ea851619be392b30ea95bdc86ac",
"language": "Rust",
"lines": 504,
"truncated": false,
"block": 1,
"row": 11017
},
{
"path": "lib/rust/enclone_process/src/core/enclone_structs.rs",
"sha256": "80218043382c85cdd08c243b2aaf766fb20608ffc0c03b8959fe1933a281e101",
"language": "Rust",
"lines": 27,
"truncated": false,
"block": 1,
"row": 10673
},
{
"path": "lib/rust/enclone_process/src/core/hcomp.rs",
"sha256": "adfc4989e77219bf7974dbe5247f1925cc4145a1c17df8857bbd767b03364cfd",
"language": "Rust",
"lines": 143,
"truncated": false,
"block": 1,
"row": 10861
},
{
"path": "lib/rust/enclone_process/src/core/join_one.rs",
"sha256": "3bee33c854ca823a59cf0c0c33e21132f8e85cb479454482a4a771a7f88244be",
"language": "Rust",
"lines": 575,
"truncated": false,
"block": 1,
"row": 11037
},
{
"path": "lib/rust/enclone_process/src/core/mod.rs",
"sha256": "6d665f042ce97df6e136ecf7a9d4ac91bd38611b25f4d82b3e02d651d0284316",
"language": "Rust",
"lines": 12,
"truncated": false,
"block": 1,
"row": 10644
},
{
"path": "lib/rust/enclone_process/src/core/opt_d.rs",
"sha256": "4a6c65c8a3fbbc353eadc804c19a29dc8ec9f1cfae25ece585ade9c3f08e4bae",
"language": "Rust",
"lines": 238,
"truncated": false,
"block": 1,
"row": 10893
},
{
"path": "lib/rust/enclone_process/src/disintegrate.rs",
"sha256": "664aba051b00f308caf0fbe2f0ad18f31bbebdb2900361b6144d9f74a46f0bf8",
"language": "Rust",
"lines": 105,
"truncated": false,
"block": 1,
"row": 10788
},
{
"path": "lib/rust/enclone_process/src/doublets.rs",
"sha256": "3dcfb85cdf4ec9c96b1652eadc1fc6aebb0402a99cf233b4bd69735f4fb44016",
"language": "Rust",
"lines": 238,
"truncated": false,
"block": 1,
"row": 10934
},
{
"path": "lib/rust/enclone_process/src/enclone/allele.rs",
"sha256": "07a0c38aa73fb57be9bf6ae589a16694093a4e3256ea8bd493d26c7fc13f0e6c",
"language": "Rust",
"lines": 491,
"truncated": false,
"block": 1,
"row": 11032
},
{
"path": "lib/rust/enclone_process/src/enclone/graph_filter.rs",
"sha256": "bdc7a3ab0e6a849d4cef81ab92f36d11ec6178278d11d0fb3a086a289ca02800",
"language": "Rust",
"lines": 377,
"truncated": false,
"block": 1,
"row": 11012
},
{
"path": "lib/rust/enclone_process/src/enclone/info.rs",
"sha256": "8a596119beaf5c3fad8934d3754382769b612f3f97153551f609da840a1bdfff",
"language": "Rust",
"lines": 315,
"truncated": false,
"block": 1,
"row": 10998
},
{
"path": "lib/rust/enclone_process/src/enclone/innate.rs",
"sha256": "11c2ba2074c8eedc694ef6718eb688a1722aba1542c18637fe047b3823853a0a",
"language": "Rust",
"lines": 251,
"truncated": false,
"block": 1,
"row": 10997
},
{
"path": "lib/rust/enclone_process/src/enclone/join.rs",
"sha256": "9a46c64973884f2d8a9aafdb783783be470a12f2774eacf67fe642b5dbcabe27",
"language": "Rust",
"lines": 162,
"truncated": false,
"block": 1,
"row": 10849
},
{
"path": "lib/rust/enclone_process/src/enclone/join2.rs",
"sha256": "416025fa77c123f31bebfa1976b4b4f71a17cf2a582c7bbec8636808146bb716",
"language": "Rust",
"lines": 73,
"truncated": false,
"block": 1,
"row": 10721
},
{
"path": "lib/rust/enclone_process/src/enclone/join_core.rs",
"sha256": "6fb0f3f111722e58789dfc6256299fe7b7a768b7e35b7f60b059fd2bbe2725dc",
"language": "Rust",
"lines": 40,
"truncated": false,
"block": 1,
"row": 10692
},
{
"path": "lib/rust/enclone_process/src/enclone/misc1.rs",
"sha256": "0af4ba5ca765862513a231c5c1a3e63a9e9c6540f44e0f1746f0fdeeff6b0b98",
"language": "Rust",
"lines": 177,
"truncated": false,
"block": 1,
"row": 10900
},
{
"path": "lib/rust/enclone_process/src/enclone/misc2.rs",
"sha256": "880c6b1a40ee58e68d986362490beb569eb3e07cf452d3ace16baf3df77628dc",
"language": "Rust",
"lines": 248,
"truncated": false,
"block": 1,
"row": 10941
},
{
"path": "lib/rust/enclone_process/src/enclone/misc3.rs",
"sha256": "a23385e9719ade01d158cb3e8b26cb9d20e93c21db53ea0748f4bd4939a89224",
"language": "Rust",
"lines": 28,
"truncated": false,
"block": 1,
"row": 10665
},
{
"path": "lib/rust/enclone_process/src/enclone/mod.rs",
"sha256": "b21d103ae73ec62db9b5c29693a6c885fc487433d8b826a86940e1548f6b6004",
"language": "Rust",
"lines": 45,
"truncated": false,
"block": 1,
"row": 10700
},
{
"path": "lib/rust/enclone_process/src/filter_umi.rs",
"sha256": "20f6de81423efca9dfdefddd637aa52fa7b55413639c9ace0b4e99467c849f44",
"language": "Rust",
"lines": 348,
"truncated": false,
"block": 1,
"row": 11004
},
{
"path": "lib/rust/enclone_process/src/flag_defective.rs",
"sha256": "70315e1ce140f7a04f46b4d882f939cf7ce259d91b043e37d144d75622fee38a",
"language": "Rust",
"lines": 250,
"truncated": false,
"block": 1,
"row": 10944
},
{
"path": "lib/rust/enclone_process/src/lib.rs",
"sha256": "3c51599166d9286e0ea8b7fa8b6e1f2203e8d570df667b44e1c747eb7132715a",
"language": "Rust",
"lines": 119,
"truncated": false,
"block": 1,
"row": 10780
},
{
"path": "lib/rust/enclone_process/src/merge_onesies.rs",
"sha256": "d4ff91ae076955c92d431533ac8d4c05fadd741b34cd780ae350d97d1d58c3fc",
"language": "Rust",
"lines": 111,
"truncated": false,
"block": 1,
"row": 10813
},
{
"path": "lib/rust/enclone_process/src/populate_features.rs",
"sha256": "b2db7f93dacb429c7375c4f830567455aadb5bba70a0e6d1c20f7e33fca31b7e",
"language": "Rust",
"lines": 66,
"truncated": false,
"block": 1,
"row": 10728
},
{
"path": "lib/rust/enclone_process/src/process/define_column_info.rs",
"sha256": "a36f4a2d86f5f392a8b9814c74457bda1f7bbfd57920bab04b78e66c7d138faf",
"language": "Rust",
"lines": 153,
"truncated": false,
"block": 1,
"row": 10860
},
{
"path": "lib/rust/enclone_process/src/process/define_mat.rs",
"sha256": "7e6fff3957f40ea46943cb0981d9c1a0071b506451f61a8e5ed1e582757205a4",
"language": "Rust",
"lines": 434,
"truncated": false,
"block": 1,
"row": 11013
},
{
"path": "lib/rust/enclone_process/src/process/delete_weaks.rs",
"sha256": "cc6a44fc0d205a490c44cec1f8df765aa2ae03da460fd1b5ba56f74412d88d9b",
"language": "Rust",
"lines": 50,
"truncated": false,
"block": 1,
"row": 10714
},
{
"path": "lib/rust/enclone_process/src/process/loupe.rs",
"sha256": "74ed131e3a1a14a68c4545c160f117cebc0627e6fe3096dc48d8256b8d21e5b9",
"language": "Rust",
"lines": 469,
"truncated": false,
"block": 1,
"row": 11024
},
{
"path": "lib/rust/enclone_process/src/process/mod.rs",
"sha256": "2b8a3d72f3c2763d69863d1ff79e7effd48ab0078ea2da39b50e7a96900da8f0",
"language": "Rust",
"lines": 8,
"truncated": false,
"block": 1,
"row": 10635
},
{
"path": "lib/rust/enclone_process/src/process/process_clonotypes.rs",
"sha256": "b76468e306671ac50ce6685409251c4a5337a70d74eb7af433b2e1c3fe139147",
"language": "Rust",
"lines": 231,
"truncated": false,
"block": 1,
"row": 10902
},
{
"path": "lib/rust/enclone_process/src/read_json.rs",
"sha256": "eaf211b0747cd542e3a7a4f5d142ccce7835348b30b3dbdd07539c01bef7c40a",
"language": "Rust",
"lines": 541,
"truncated": false,
"block": 1,
"row": 11029
},
{
"path": "lib/rust/enclone_process/src/some_filters.rs",
"sha256": "b09f42f7aaf1e4eaff2240acf17f0d4a3d40431dd60e528ecad42a2309e5d2d2",
"language": "Rust",
"lines": 319,
"truncated": false,
"block": 1,
"row": 10970
},
{
"path": "lib/rust/enclone_process/src/split_candidate_clonotypes.rs",
"sha256": "e5b1aad1865cc62e1562dda7b6c10fe4415695b0c44bb37abc0d3578951feac0",
"language": "Rust",
"lines": 183,
"truncated": false,
"block": 1,
"row": 10876
},
{
"path": "lib/rust/enclone_process/src/start.rs",
"sha256": "b8d18cba6cc7ec51ddb61780594eee96008447ab4c6d8eff08dd79470869d773",
"language": "Rust",
"lines": 596,
"truncated": false,
"block": 1,
"row": 11028
},
{
"path": "lib/rust/enclone_process/src/weak_chains.rs",
"sha256": "ddd02dce72f6b8550025da52de3f939e09bed7aba7a1c693603edead47b45654",
"language": "Rust",
"lines": 113,
"truncated": false,
"block": 1,
"row": 10808
},
{
"path": "lib/rust/enclone_proto/src/enclone.types.rs",
"sha256": "2de9bc511e73b4853ed860601a852c0838079221e36a1f4af2c4f92c9c05ca27",
"language": "Rust",
"lines": 517,
"truncated": false,
"block": 1,
"row": 11048
},
{
"path": "lib/rust/enclone_proto/src/lib.rs",
"sha256": "87c30b6250f422d4bdd40437e6dbeea61e213ec00081bcdc2731f1879ce826b0",
"language": "Rust",
"lines": 8,
"truncated": false,
"block": 1,
"row": 10633
},
{
"path": "lib/rust/enclone_proto/src/proto_io.rs",
"sha256": "2053120564638cb29f2fe0406f728d5d5d01feb2b78051bb4156ba46d3966e54",
"language": "Rust",
"lines": 269,
"truncated": false,
"block": 1,
"row": 10956
},
{
"path": "lib/rust/enclone_proto/src/types.rs",
"sha256": "4b38715603ec76612bc196e36cb269182e6d6c0ad98e1bf43720da983fc40ba4",
"language": "Rust",
"lines": 188,
"truncated": false,
"block": 1,
"row": 10851
},
{
"path": "lib/rust/equiv/src/lib.rs",
"sha256": "bd3594b8ba3cedb6effd484744ea975de4d438cdf5dc1d2531197d07d8e27e47",
"language": "Rust",
"lines": 369,
"truncated": false,
"block": 1,
"row": 10994
},
{
"path": "lib/rust/fast_utils/src/barcode_counter.rs",
"sha256": "aeb50bbf5590f88412a29d35f5d140656bedc38ebc86c475a8773c8d1039d183",
"language": "Rust",
"lines": 186,
"truncated": false,
"block": 1,
"row": 10896
},
{
"path": "lib/rust/fast_utils/src/barcode_index.rs",
"sha256": "11d7b1bda35a1f2ef7e9cac17c45bba57b96e19980e3938064d9f257da2cc330",
"language": "Rust",
"lines": 93,
"truncated": false,
"block": 1,
"row": 10750
},
{
"path": "lib/rust/fast_utils/src/compute_extra_multiplexing_metrics.rs",
"sha256": "81fb1c0810c8d3d9b405a73afb655f30d8b004473a01fffcf6098b0d6fa50ff0",
"language": "Rust",
"lines": 224,
"truncated": false,
"block": 1,
"row": 10926
},
{
"path": "lib/rust/fast_utils/src/diff_exp.rs",
"sha256": "5602ed0c76625b6e3bcc2586ab410e21d000c0c8eb4011094aa74e6ca07a149a",
"language": "Rust",
"lines": 722,
"truncated": false,
"block": 1,
"row": 11061
},
{
"path": "lib/rust/fast_utils/src/feature_collection_geojson_validator.rs",
"sha256": "a68ac63e61a3776dbf0f87cfe0584b1637652f2dc07623d20c488fbca69b2e0d",
"language": "Rust",
"lines": 377,
"truncated": false,
"block": 1,
"row": 10947
},
{
"path": "lib/rust/fast_utils/src/filtered_barcodes.rs",
"sha256": "0486450dad8f86189a588faeccadec6eaa000ae12ab1180b1ebce6d6ff806e28",
"language": "Rust",
"lines": 292,
"truncated": false,
"block": 1,
"row": 10952
},
{
"path": "lib/rust/fast_utils/src/gdna_analysis.rs",
"sha256": "36611b1bce3d4e00e7187d38a465c092935961375602a50cb57eb509ccbe3712",
"language": "Rust",
"lines": 61,
"truncated": false,
"block": 1,
"row": 10729
},
{
"path": "lib/rust/fast_utils/src/lib.rs",
"sha256": "a301c03d3f99fd461ecf8295d5a7056675071abbe18dc41bb7ab29a08db19557",
"language": "Rust",
"lines": 286,
"truncated": false,
"block": 1,
"row": 10967
},
{
"path": "lib/rust/fast_utils/src/matrix.rs",
"sha256": "83bb77b576d4da47102c469bc47a90d79333f2b62fd14f815f91c41cdf0b879a",
"language": "Rust",
"lines": 86,
"truncated": false,
"block": 1,
"row": 10793
},
{
"path": "lib/rust/fast_utils/src/molecule_info.rs",
"sha256": "f20bb4876b8488c2aa1f807e938645c5ff961eb64afb981f9523dd11cb648ba8",
"language": "Rust",
"lines": 146,
"truncated": false,
"block": 1,
"row": 10839
},
{
"path": "lib/rust/fast_utils/src/multi_graph.rs",
"sha256": "64e1d90466259d461492779205f91997bd36866ed02ff4a147fe732160e31596",
"language": "Rust",
"lines": 116,
"truncated": false,
"block": 1,
"row": 10807
},
{
"path": "lib/rust/fastq_set/src/adapter_trimmer.rs",
"sha256": "e222a56febb7333d1a1f55afbb799a52e399be7be2ff7dc0215464b31352ef02",
"language": "Rust",
"lines": 1116,
"truncated": false,
"block": 1,
"row": 11073
},
{
"path": "lib/rust/fastq_set/src/adapters.rs",
"sha256": "334f25b84eec1a522be1f083802723cf764ad4af6f12b0486f31ff8db52a2d84",
"language": "Rust",
"lines": 252,
"truncated": false,
"block": 1,
"row": 10957
},
{
"path": "lib/rust/fastq_set/src/array.rs",
"sha256": "ab662930e53b49ca1759e5ff84f05f00e3636e3df41faaf7ac7652bbfa59f3b8",
"language": "Rust",
"lines": 331,
"truncated": false,
"block": 1,
"row": 10925
},
{
"path": "lib/rust/fastq_set/src/background_iterator.rs",
"sha256": "35663b11a3bde61b75dae6e9f647c34539cc49a51246c1d13e5bf8206a084b12",
"language": "Rust",
"lines": 252,
"truncated": false,
"block": 1,
"row": 10908
},
{
"path": "lib/rust/fastq_set/src/filenames/bcl2fastq.rs",
"sha256": "70d4cd3845b6fd014e1e7f784b349b35dd9ebe1f9f2e2661d5aadcbdf74ce97f",
"language": "Rust",
"lines": 485,
"truncated": false,
"block": 1,
"row": 11019
},
{
"path": "lib/rust/fastq_set/src/filenames/bcl_processor.rs",
"sha256": "81a6de37ebae48cc53bedcc1e2ac47b0a14f147fcafb79930c3d9b813009ef3e",
"language": "Rust",
"lines": 315,
"truncated": false,
"block": 1,
"row": 10954
},
{
"path": "lib/rust/fastq_set/src/filenames/fastq_dir.rs",
"sha256": "185b4b2be03630721612cb4ca185d680ac7f3f74c83aec70c5d9ca4c23ba56a6",
"language": "Rust",
"lines": 204,
"truncated": false,
"block": 1,
"row": 10890
},
{
"path": "lib/rust/fastq_set/src/filenames/mod.rs",
"sha256": "a9b5dfe604f094d7b2214a95798eba86a0502799ebdb3bc72a6c7b496944e97f",
"language": "Rust",
"lines": 50,
"truncated": false,
"block": 1,
"row": 10701
},
{
"path": "lib/rust/fastq_set/src/filenames/sbx.rs",
"sha256": "ac5164c566e04686278d6b708eab8524ca5ab681310c17312adc418053f2a6cc",
"language": "Rust",
"lines": 43,
"truncated": false,
"block": 1,
"row": 10696
},
{
"path": "lib/rust/fastq_set/src/illumina_header_info.rs",
"sha256": "1747a250c97b4aea6abcf948a989c416544d9231e2074c8c7981b0953446c782",
"language": "Rust",
"lines": 152,
"truncated": false,
"block": 1,
"row": 10816
},
{
"path": "lib/rust/fastq_set/src/length_trim_iter.rs",
"sha256": "64761cdac74ebb1df0619b8cc983c983f07ffbd7ba94f2ef2d48bea0784e5a1a",
"language": "Rust",
"lines": 85,
"truncated": false,
"block": 1,
"row": 10794
},
{
"path": "lib/rust/fastq_set/src/lib.rs",
"sha256": "2fb798a618f536bab8d257007e9cde17eac28ad9efd5eee337bfb69f7faa4bf5",
"language": "Rust",
"lines": 63,
"truncated": false,
"block": 1,
"row": 10724
},
{
"path": "lib/rust/fastq_set/src/long_read_adapter_trimmer.rs",
"sha256": "d9fb9d40163b8530d214ab7d9d5c29f44a0ccc9e8c0166528cb098584ee31060",
"language": "Rust",
"lines": 1052,
"truncated": false,
"block": 1,
"row": 11077
},
{
"path": "lib/rust/fastq_set/src/metric_utils.rs",
"sha256": "c1c0befa97aea96feed372e0bffd1231dfd2bb591cc4c044dabaf1f6b605d82f",
"language": "Rust",
"lines": 20,
"truncated": false,
"block": 1,
"row": 10652
},
{
"path": "lib/rust/fastq_set/src/read_pair.rs",
"sha256": "3f35f18bee0e0ee0050294672e9558c2f6a262bd5de716858d1ecc48315d40af",
"language": "Rust",
"lines": 1296,
"truncated": false,
"block": 1,
"row": 11081
},
{
"path": "lib/rust/fastq_set/src/read_pair_iter.rs",
"sha256": "0721dfea696c58358e6e5c483c1d3e3b9262ee61098611b32e8d2a0f3c73b9d1",
"language": "Rust",
"lines": 956,
"truncated": false,
"block": 1,
"row": 11068
},
{
"path": "lib/rust/fastq_set/src/sample_index_map.rs",
"sha256": "7545c318864d0114c47e9d6ce28ad4387a96550a218882c4c387041e2a011925",
"language": "Rust",
"lines": 1693,
"truncated": false,
"block": 1,
"row": 11091
},
{
"path": "lib/rust/fastq_set/src/squality.rs",
"sha256": "f558aef8d7b1f22be952449748dfd670bb0669ee43f4cc5b1709c302d7fcfcf6",
"language": "Rust",
"lines": 106,
"truncated": false,
"block": 1,
"row": 10790
},
{
"path": "lib/rust/fastq_set/src/sseq.rs",
"sha256": "36fc9768abfda3be095f41693e92b5f6a971a0e178ea5a3cf353dba240fa505e",
"language": "Rust",
"lines": 717,
"truncated": false,
"block": 1,
"row": 11042
},
{
"path": "lib/rust/graph_simple/src/lib.rs",
"sha256": "0db1ec7503de63f4ff7fb8a9fb21adb81b37c9eb521efd5a1de74ce0dfa870a9",
"language": "Rust",
"lines": 245,
"truncated": false,
"block": 1,
"row": 10903
},
{
"path": "lib/rust/hyperbase/src/lib.rs",
"sha256": "16ab7fc6edefb8af010588d55708d81caeaf91a0e740e3f4456faab315112d43",
"language": "Rust",
"lines": 633,
"truncated": false,
"block": 1,
"row": 11047
},
{
"path": "lib/rust/io_utils/src/lib.rs",
"sha256": "62ba76052e7d1219243ca2566270655c4fbda1a2771b397d7009143a36c4fb86",
"language": "Rust",
"lines": 39,
"truncated": false,
"block": 1,
"row": 10699
},
{
"path": "lib/rust/jibes_o3/src/lib.rs",
"sha256": "7fdbc0d1a03a43bb7f8d67c775746d559574eb9928c7e73a2cb39034f7bdaa97",
"language": "Rust",
"lines": 689,
"truncated": false,
"block": 1,
"row": 11051
},
{
"path": "lib/rust/json_report_derive/src/lib.rs",
"sha256": "10d74a44b81c3c12c2962b6cfca061ce985388e265e2909f305ab7e038441f1f",
"language": "Rust",
"lines": 258,
"truncated": false,
"block": 1,
"row": 10922
},
{
"path": "lib/rust/kmer_lookup/src/lib.rs",
"sha256": "61d256d908de56eebf1d5c72d0f243e1185434eb9af5222f843a11552146f306",
"language": "Rust",
"lines": 63,
"truncated": false,
"block": 1,
"row": 10717
},
{
"path": "lib/rust/metric/src/collections.rs",
"sha256": "d9dc8ec3dfcade9fd030cadbea125d6282fd0d51598e4f4ea1e32b2d21680341",
"language": "Rust",
"lines": 204,
"truncated": false,
"block": 1,
"row": 10883
},
{
"path": "lib/rust/metric/src/count_metric.rs",
"sha256": "af2d0a9cb3e12c6c366b5a7cd313269c31d20de03c97e2819765a9ce59af89ad",
"language": "Rust",
"lines": 174,
"truncated": false,
"block": 1,
"row": 10842
},
{
"path": "lib/rust/metric/src/histogram.rs",
"sha256": "43ef90378f8ed9e22d5109dfcf4215370bbd31dbebf7410ad6f295a3e46e9aa1",
"language": "Rust",
"lines": 913,
"truncated": false,
"block": 1,
"row": 11055
},
{
"path": "lib/rust/metric/src/lib.rs",
"sha256": "ae38ee42d508ad3ba0fa1571e73de08ab4f2cfe67530fc79961eb7673b0e1d05",
"language": "Rust",
"lines": 856,
"truncated": false,
"block": 1,
"row": 11058
},
{
"path": "lib/rust/metric/src/mean_metric.rs",
"sha256": "91a9fa40d90610b4ef30d8f68c2009a96122760cff53c87830b2749905788082",
"language": "Rust",
"lines": 132,
"truncated": false,
"block": 1,
"row": 10803
},
{
"path": "lib/rust/metric/src/num.rs",
"sha256": "a297669210a4283e74f8e49e3b6ed94cfdffcf1142280798b6ab0542c41f3e52",
"language": "Rust",
"lines": 27,
"truncated": false,
"block": 1,
"row": 10666
},
{
"path": "lib/rust/metric/src/option.rs",
"sha256": "845458dfe60d255f2d8d6841cecce895ba37612d3d8bb39187bc9c7a57ee2bdd",
"language": "Rust",
"lines": 79,
"truncated": false,
"block": 1,
"row": 10736
},
{
"path": "lib/rust/metric/src/percent_metric.rs",
"sha256": "df58e7e073ae298ed2fcfa8ae3ca6ec26241d090d64515adf0fa48ed0f4fed7d",
"language": "Rust",
"lines": 210,
"truncated": false,
"block": 1,
"row": 10874
},
{
"path": "lib/rust/metric_derive/src/lib.rs",
"sha256": "4b3f294487498be7d7309645154c16acde42f1602c51e1f49a4b40d2ba8b7fb6",
"language": "Rust",
"lines": 171,
"truncated": false,
"block": 1,
"row": 10872
},
{
"path": "lib/rust/multi/src/barcode_sample_assignment.rs",
"sha256": "d7265db68add51e51024522423c155d565d2e3e08a4635eeb6498bfc0a6d8d80",
"language": "Rust",
"lines": 458,
"truncated": false,
"block": 1,
"row": 11016
},
{
"path": "lib/rust/multi/src/cmo_set/mod.rs",
"sha256": "1c6756b19aadbcf6d726d0a9278c4a98c6da191558097c20f5eada1a9a063a58",
"language": "Rust",
"lines": 71,
"truncated": false,
"block": 1,
"row": 10718
},
{
"path": "lib/rust/multi/src/config/csv.rs",
"sha256": "d59f11dab0c8fa939841e526e1fba4f1faffef738a1f41f1de1415cdf34d235a",
"language": "Rust",
"lines": 255,
"truncated": false,
"block": 1,
"row": 10939
},
{
"path": "lib/rust/multi/src/config/mod.rs",
"sha256": "6e52992a803d86188473c685686fd89758f8ee61bd0e466248b90f2547affe7b",
"language": "Rust",
"lines": 5363,
"truncated": false,
"block": 1,
"row": 11099
},
{
"path": "lib/rust/multi/src/config/parse.rs",
"sha256": "43e6992b6a21e5967913f78cc5b65006d4f6826b2bccceef66758a79836e96d1",
"language": "Rust",
"lines": 404,
"truncated": false,
"block": 1,
"row": 10989
},
{
"path": "lib/rust/multi/src/config/preflight.rs",
"sha256": "83c9d7a085ddd96d6c42d178f58d9b9f7a97bd3fd6f1478c0d819a9a9ff56bf0",
"language": "Rust",
"lines": 1387,
"truncated": false,
"block": 1,
"row": 11086
},
{
"path": "lib/rust/multi/src/config/scsv.rs",
"sha256": "a5775fe02afb273535dc31a02bd88ccded12a735a9509e01f094be3f3fb4ef0d",
"language": "Rust",
"lines": 514,
"truncated": false,
"block": 1,
"row": 11003
},
{
"path": "lib/rust/multi/src/deprecated_os.rs",
"sha256": "a56c9d3b1bda531fd1524b7cfcd55f7e61a292babb8088dc3aa8f092f20210ef",
"language": "Rust",
"lines": 205,
"truncated": false,
"block": 1,
"row": 10917
},
{
"path": "lib/rust/multi/src/lib.rs",
"sha256": "e673012768335b9398392bb020c736e99ea553cda540b730d476086c73e6ea0b",
"language": "Rust",
"lines": 10,
"truncated": false,
"block": 1,
"row": 10632
},
{
"path": "lib/rust/multiconfig_converter/src/lib.rs",
"sha256": "85dffaec542fa71e6d9b07751f2c784446956d82a85e7abe281196d67aca2a04",
"language": "Rust",
"lines": 69,
"truncated": false,
"block": 1,
"row": 10740
},
{
"path": "lib/rust/par_proc/src/lib.rs",
"sha256": "be82577b5b96fd1b494673fa5aaeab2262b6b8064fa78271ca3cf2cc27c7d49c",
"language": "Rust",
"lines": 6,
"truncated": false,
"block": 1,
"row": 10630
},
{
"path": "lib/rust/par_proc/src/par_proc.rs",
"sha256": "afe24dfcfa96670d88c8e360eb30e6ec1015305942b561fe1cf978f81dc8bb6d",
"language": "Rust",
"lines": 461,
"truncated": false,
"block": 1,
"row": 11014
},
{
"path": "lib/rust/pyanyhow/src/lib.rs",
"sha256": "8e097169b33930d8eba98ceefa9df1bda525aa5b13f0ca4c1494ea66e0eb24b9",
"language": "Rust",
"lines": 27,
"truncated": false,
"block": 1,
"row": 10657
},
{
"path": "lib/rust/slide_design/src/lib.rs",
"sha256": "a9bff7c7002ad8bc38b2f486774d244d6212b31cd523665abc7f9cbc7575cba8",
"language": "Rust",
"lines": 10,
"truncated": false,
"block": 1,
"row": 10639
},
{
"path": "lib/rust/slide_design/src/stubs/mod.rs",
"sha256": "0137845d2ea2ba738166fb2ef0922b4ecfae77a46c064193fdf204284f7d49b7",
"language": "Rust",
"lines": 32,
"truncated": false,
"block": 1,
"row": 10668
},
{
"path": "lib/rust/souporcell/src/lib.rs",
"sha256": "21d9119c7269d66a1f8f389f5548aa303f292232a1f6619bbc083484f8c1d4d0",
"language": "Rust",
"lines": 158,
"truncated": false,
"block": 1,
"row": 10841
},
{
"path": "lib/rust/souporcell/src/souporcell.rs",
"sha256": "070e5621c1a07db980fe522c91ad5fab5f4a068c42a42b581e8dcbda603aca43",
"language": "Rust",
"lines": 476,
"truncated": false,
"block": 1,
"row": 11023
},
{
"path": "lib/rust/stats/src/lib.rs",
"sha256": "ed5e34e3a6ebef75359f86dff8906935621e36791c9d85198bcf42989ce4b9f7",
"language": "Rust",
"lines": 19,
"truncated": false,
"block": 1,
"row": 10654
},
{
"path": "lib/rust/stats/src/nx.rs",
"sha256": "a6732de8000ca27287597287bf23e59137674ac885a8c32c3dd6cf6086023d0b",
"language": "Rust",
"lines": 158,
"truncated": false,
"block": 1,
"row": 10828
},
{
"path": "lib/rust/stats/src/reservoir_sampling.rs",
"sha256": "182342b5090d426b38ddc21f105d61eb98a1ac93838eeb5b9926c1e6c1583649",
"language": "Rust",
"lines": 100,
"truncated": false,
"block": 1,
"row": 10771
},
{
"path": "lib/rust/string_utils/src/lib.rs",
"sha256": "8728924a2da3837061695f61bf53273c8332bd546816893c30dc8bb18529577b",
"language": "Rust",
"lines": 72,
"truncated": false,
"block": 1,
"row": 10754
},
{
"path": "lib/rust/transcriptome/src/bed12.rs",
"sha256": "51acd83c47b9e2b5654a2c4b2a29c048926b303dd8b27fde9919aa0e3b1d63fd",
"language": "Rust",
"lines": 161,
"truncated": false,
"block": 1,
"row": 10966
},
{
"path": "lib/rust/transcriptome/src/bin/gtf_to_gene_index.rs",
"sha256": "f0b69e568712febc88505cfb89c06b6fab1838e3ffee64deabeb6f59a4554ce8",
"language": "Rust",
"lines": 33,
"truncated": false,
"block": 1,
"row": 10681
},
{
"path": "lib/rust/transcriptome/src/lib.rs",
"sha256": "e21d6fa059a5f8a0920fe42f344ac0a77b1306e59ffdf53679354d66475c62cd",
"language": "Rust",
"lines": 13,
"truncated": false,
"block": 1,
"row": 10643
},
{
"path": "lib/rust/transcriptome/src/parse_gtf.rs",
"sha256": "38b1b24282edfcb124294cf8e313adbfd4ce24967cb2768238a68d024f135aea",
"language": "Rust",
"lines": 365,
"truncated": false,
"block": 1,
"row": 10992
},
{
"path": "lib/rust/transcriptome/src/python_gene_index.rs",
"sha256": "6496db7c93e7ea0511844194b260c70c6e3edeef21ae3f34c4e3d4d20ed5febd",
"language": "Rust",
"lines": 218,
"truncated": false,
"block": 1,
"row": 10898
},
{
"path": "lib/rust/transcriptome/src/transcript_index.rs",
"sha256": "f3187f29ab565615f9d2b08d49751816c87c5e41c22c4a22f63196f4eef03bf9",
"language": "Rust",
"lines": 84,
"truncated": false,
"block": 1,
"row": 10738
},
{
"path": "lib/rust/transcriptome/src/transcript_sequence.rs",
"sha256": "cf7ea8a7a63c17c1c70a7718fcd11833fbfbb7db5b38d617445080c66777440e",
"language": "Rust",
"lines": 122,
"truncated": false,
"block": 1,
"row": 10796
},
{
"path": "lib/rust/transcriptome/src/transcriptome.rs",
"sha256": "c4ea51fb0b1143c294f02635260812089278be428bcf1af780af6380a184e755",
"language": "Rust",
"lines": 562,
"truncated": false,
"block": 1,
"row": 11036
},
{
"path": "lib/rust/tx_annotation/src/lib.rs",
"sha256": "18f79c5e80428220d57f3dbef5f61f18304a618e45f1ee812228de38f75cd3e2",
"language": "Rust",
"lines": 6,
"truncated": false,
"block": 1,
"row": 10625
},
{
"path": "lib/rust/tx_annotation/src/mark_dups.rs",
"sha256": "deab223caec537c8c493f542e0b450ff6a5d6799843084cf34a368320f979b0b",
"language": "Rust",
"lines": 429,
"truncated": false,
"block": 1,
"row": 11008
},
{
"path": "lib/rust/tx_annotation/src/read.rs",
"sha256": "711b13d166014c1e7485a72ae79799f107c97b6d5d9318c0603d8cb7a327d4af",
"language": "Rust",
"lines": 1631,
"truncated": false,
"block": 1,
"row": 11090
},
{
"path": "lib/rust/tx_annotation/src/transcript.rs",
"sha256": "2aeaa5d5ac58ff1d0b01ecb7d7117fd46e2d17ad1f404cf06045c549c6ef9478",
"language": "Rust",
"lines": 1282,
"truncated": false,
"block": 1,
"row": 11078
},
{
"path": "lib/rust/tx_annotation/src/visitor.rs",
"sha256": "ad92b5fdd1f524f9da753487a1dff339721d9e80cc013d1ba58a067bf95bb078",
"language": "Rust",
"lines": 253,
"truncated": false,
"block": 1,
"row": 10979
},
{
"path": "lib/rust/umi/src/info.rs",
"sha256": "49af62349206e9bfb0a17ca0c6606f2faa18539a641eb3a0e70c3a23694e6d70",
"language": "Rust",
"lines": 20,
"truncated": false,
"block": 1,
"row": 10650
},
{
"path": "lib/rust/umi/src/lib.rs",
"sha256": "9a6363f6b4fc2882529b639abcb4a5176feaf96840642a276bcd8342352e0980",
"language": "Rust",
"lines": 157,
"truncated": false,
"block": 1,
"row": 10832
},
{
"path": "lib/rust/vartrix/src/lib.rs",
"sha256": "4bf8f2e6ca86a8e70d2dffed11de4ead52c2c046b3d25cc354b819a3077f7838",
"language": "Rust",
"lines": 1105,
"truncated": false,
"block": 1,
"row": 11071
},
{
"path": "lib/rust/vdj_ann/src/align.rs",
"sha256": "fdbac58d1c32d0746ba99ef7ed03754c3d75ea1e7a88efd0e4eb1c8177de3006",
"language": "Rust",
"lines": 12,
"truncated": false,
"block": 1,
"row": 10655
},
{
"path": "lib/rust/vdj_ann/src/annotate.rs",
"sha256": "b3c9d217f4af6e9881fd31f774febdc79bb0949843d193da0f7ae54948daa878",
"language": "Rust",
"lines": 3641,
"truncated": false,
"block": 1,
"row": 11098
},
{
"path": "lib/rust/vdj_ann/src/lib.rs",
"sha256": "4b874f91f38ae23aa51978e78283e55b0d683f0b9e64ce159adad0fe40cee359",
"language": "Rust",
"lines": 11,
"truncated": false,
"block": 1,
"row": 10640
},
{
"path": "lib/rust/vdj_ann/src/refx.rs",
"sha256": "ceff16ab4726fda02fd4fd36450a028831b700ce58d560d83abaf14a6b694e0a",
"language": "Rust",
"lines": 281,
"truncated": false,
"block": 1,
"row": 10940
},
{
"path": "lib/rust/vdj_ann/src/transcript.rs",
"sha256": "08c3b323e005885dbb085cfb71fd35cd14e1ec0b4df32f10257939b48c8a7a51",
"language": "Rust",
"lines": 356,
"truncated": false,
"block": 1,
"row": 10982
},
{
"path": "lib/rust/vdj_ann/src/vdj_features.rs",
"sha256": "b989d166d35fb8f152b50313bcbac0e200fbb621be9a7c41c37ca75a68e73e7c",
"language": "Rust",
"lines": 541,
"truncated": false,
"block": 1,
"row": 11021
},
{
"path": "lib/rust/vdj_ann_ref/src/lib.rs",
"sha256": "7f2ae4aeda98a2d26177589d7caeb41bfe75d04fb9610d8ef6bcfc92701f0529",
"language": "Rust",
"lines": 100,
"truncated": false,
"block": 1,
"row": 10797
},
{
"path": "lib/rust/vdj_asm_asm/src/adapter.rs",
"sha256": "7ab46b4e0815148eeb1b2a838fb58d3623b8f7f55bcca62a27f088edd965e778",
"language": "Rust",
"lines": 78,
"truncated": false,
"block": 1,
"row": 10764
},
{
"path": "lib/rust/vdj_asm_asm/src/airrfilter.rs",
"sha256": "b155ca55f3c2fcded483b8197e6ec6301cff8d710ca01d07bb00c9c547728acc",
"language": "Rust",
"lines": 288,
"truncated": false,
"block": 1,
"row": 10993
},
{
"path": "lib/rust/vdj_asm_asm/src/asm_call_cells.rs",
"sha256": "f112d1fb6f770936ce797528e72d4636ceda5da16afe225f2082a3b02520d9d9",
"language": "Rust",
"lines": 215,
"truncated": false,
"block": 1,
"row": 10938
},
{
"path": "lib/rust/vdj_asm_asm/src/asm_metrics.rs",
"sha256": "2a8bfe4cbe33f476175418d5a5c781f51c7ac456298c4a26f4950c419620c5cb",
"language": "Rust",
"lines": 96,
"truncated": false,
"block": 1,
"row": 10789
},
{
"path": "lib/rust/vdj_asm_asm/src/assembly.rs",
"sha256": "19fab2ba8722c059487be82ea83d2bb0ab37285a99c9a670ffcf77e58d4635d3",
"language": "Rust",
"lines": 1332,
"truncated": false,
"block": 1,
"row": 11085
},
{
"path": "lib/rust/vdj_asm_asm/src/assembly_types.rs",
"sha256": "aab7af654c7317dc8e5b530a24c0b321ba46cb1d6c90f8bdcf92066ca19332ce",
"language": "Rust",
"lines": 78,
"truncated": false,
"block": 1,
"row": 10731
},
{
"path": "lib/rust/vdj_asm_asm/src/contig_aligner.rs",
"sha256": "2f5e26d71f0b5d371dcbc263882011e0447c919475b7712211b34527e830254b",
"language": "Rust",
"lines": 79,
"truncated": false,
"block": 1,
"row": 10762
},
{
"path": "lib/rust/vdj_asm_asm/src/filter_exact_clonotypes.rs",
"sha256": "86cc69050a64fcc7448698674473daa2d6266b7d430a66c08a9b10d719f28729",
"language": "Rust",
"lines": 81,
"truncated": false,
"block": 1,
"row": 10775
},
{
"path": "lib/rust/vdj_asm_asm/src/filter_sample_specific.rs",
"sha256": "5c285fc42a5961a80d0e3f8fdf7fc30fd6d0c812cd9d9f83c49da098139cb34a",
"language": "Rust",
"lines": 119,
"truncated": false,
"block": 1,
"row": 10830
},
{
"path": "lib/rust/vdj_asm_asm/src/lib.rs",
"sha256": "e71906979405cabf6f927add77bd27ec02cc780edde828f2cea87c4fbee597ac",
"language": "Rust",
"lines": 29,
"truncated": false,
"block": 1,
"row": 10670
},
{
"path": "lib/rust/vdj_asm_asm/src/make_exact_clonotypes.rs",
"sha256": "72738a119315f585b4d74bd5ee55e20285528c2e4646f403f78265c8251b79cb",
"language": "Rust",
"lines": 38,
"truncated": false,
"block": 1,
"row": 10691
},
{
"path": "lib/rust/vdj_asm_asm/src/make_filter_switch.rs",
"sha256": "001cf2071f73037f428b5a00b850e7dbcff609fc5a4de153543927d27a205caf",
"language": "Rust",
"lines": 65,
"truncated": false,
"block": 1,
"row": 10723
},
{
"path": "lib/rust/vdj_asm_asm/src/merge_per_sample_annotations.rs",
"sha256": "097ff8bd7e19cdb69d66cbf72ee23df38cf80bd4baf1d95b8a06dc4977410dcc",
"language": "Rust",
"lines": 169,
"truncated": false,
"block": 1,
"row": 10885
},
{
"path": "lib/rust/vdj_asm_asm/src/subset_assembly_outs.rs",
"sha256": "6ae7854d4dc8e709811128861c25ac19657ad68de51690c13e4ba843d802ecf4",
"language": "Rust",
"lines": 195,
"truncated": false,
"block": 1,
"row": 10923
},
{
"path": "lib/rust/vdj_asm_asm/src/translator.rs",
"sha256": "b7ba69910cdc7861c3178d8dfa25318e79629a38113853b6d3103c8c81b9a911",
"language": "Rust",
"lines": 271,
"truncated": false,
"block": 1,
"row": 10955
},
{
"path": "lib/rust/vdj_asm_asm/src/write_ann_csv.rs",
"sha256": "f7d37df65c2d45b1aa119a610f19d63cea7c827e2e89fe1068c40f40bec60d52",
"language": "Rust",
"lines": 139,
"truncated": false,
"block": 1,
"row": 10852
},
{
"path": "lib/rust/vdj_asm_asm/src/write_contig_outs.rs",
"sha256": "332a1001ebeb81351bfb2ec9b830c6006dcc0b3f656c8d838218a597adf564aa",
"language": "Rust",
"lines": 440,
"truncated": false,
"block": 1,
"row": 11030
},
{
"path": "lib/rust/vdj_asm_utils/src/asm.rs",
"sha256": "7489d10630fc570faf674f5357a98dde0ba81c2d3ed8f4fe33ce4bf5942c9595",
"language": "Rust",
"lines": 146,
"truncated": false,
"block": 1,
"row": 10792
},
{
"path": "lib/rust/vdj_asm_utils/src/bam_utils.rs",
"sha256": "41487d8e7434753144a7e044e369acca75cedc74052e12e439f686e17c997a4b",
"language": "Rust",
"lines": 142,
"truncated": false,
"block": 1,
"row": 10855
},
{
"path": "lib/rust/vdj_asm_utils/src/barcode_data.rs",
"sha256": "074eec53b9060d540424cf6804f1d2071c7562249dc2e55aa94d7bee44a90448",
"language": "Rust",
"lines": 941,
"truncated": false,
"block": 1,
"row": 11070
},
{
"path": "lib/rust/vdj_asm_utils/src/constants.rs",
"sha256": "4ae0b9603fa5d8f33307f48c187cc10bbaa24aa7b3e3c83bee387e1505fcd03e",
"language": "Rust",
"lines": 37,
"truncated": false,
"block": 1,
"row": 10682
},
{
"path": "lib/rust/vdj_asm_utils/src/contigs.rs",
"sha256": "e7fd65e220528293e24cff41ad36b83dd5eafb8c6f464d35e86ebf8a6a073bd6",
"language": "Rust",
"lines": 1575,
"truncated": false,
"block": 1,
"row": 11087
},
{
"path": "lib/rust/vdj_asm_utils/src/exact_clonotyping.rs",
"sha256": "d49bfe936b608e31ce12bd4955e49d3b46f8c26b272e6ae52733d986547960ae",
"language": "Rust",
"lines": 147,
"truncated": false,
"block": 1,
"row": 10845
},
{
"path": "lib/rust/vdj_asm_utils/src/fastq.rs",
"sha256": "1361e83b6672f41fa423ee45ff2ece0b4f4085afcbbfa82589b8cebc01e0c442",
"language": "Rust",
"lines": 45,
"truncated": false,
"block": 1,
"row": 10687
},
{
"path": "lib/rust/vdj_asm_utils/src/graph_read.rs",
"sha256": "4f4e7eef71bc295031bd816c3213a7967eb38158a10a0527395283bf940c8a79",
"language": "Rust",
"lines": 383,
"truncated": false,
"block": 1,
"row": 11006
},
{
"path": "lib/rust/vdj_asm_utils/src/heuristics.rs",
"sha256": "7d69fe620aa5a248361fb23d237882aaa55e24cce3a3d372ba58771632b42bf2",
"language": "Rust",
"lines": 22,
"truncated": false,
"block": 1,
"row": 10649
},
{
"path": "lib/rust/vdj_asm_utils/src/lib.rs",
"sha256": "d553f0e5dd2cb618a49e22675d7479f6275518a3254bc0ce58d245d542d8e820",
"language": "Rust",
"lines": 31,
"truncated": false,
"block": 1,
"row": 10659
},
{
"path": "lib/rust/vdj_asm_utils/src/log_opts.rs",
"sha256": "1d6c7e02cdda5374f6b0c5c5f32493af9058fe8ec68187b6f0120c33c150a475",
"language": "Rust",
"lines": 21,
"truncated": false,
"block": 1,
"row": 10678
},
{
"path": "lib/rust/vdj_asm_utils/src/primers.rs",
"sha256": "ca5f8087d7ff6b2b138cde4beb820fcbe6f71fbf8f99d797309f7292e558dd1c",
"language": "Rust",
"lines": 154,
"truncated": false,
"block": 1,
"row": 10868
},
{
"path": "lib/rust/vdj_asm_utils/src/process.rs",
"sha256": "d02602b19a02789f2c65d1e00aa53de39ac21d0e69a1d9bca0853d44d0d78cca",
"language": "Rust",
"lines": 1656,
"truncated": false,
"block": 1,
"row": 11089
},
{
"path": "lib/rust/vdj_asm_utils/src/ref_free.rs",
"sha256": "aa320977832aa2548bdc3452e4b126b00ec0ad01b542a66f8c63b5968aa4ee04",
"language": "Rust",
"lines": 1215,
"truncated": false,
"block": 1,
"row": 11074
},
{
"path": "lib/rust/vdj_asm_utils/src/sw.rs",
"sha256": "46a0973c07a213073f5856be7fcd41b3af0a21db40e5bb9c1b4d3787c9d5c4b6",
"language": "Rust",
"lines": 405,
"truncated": false,
"block": 1,
"row": 11005
},
{
"path": "lib/rust/vdj_asm_utils/src/umi_data.rs",
"sha256": "fd445bdb2e63107a5f39e00431f46661fc0ebb61077a1a92dd559ee6319cd3f7",
"language": "Rust",
"lines": 72,
"truncated": false,
"block": 1,
"row": 10722
},
{
"path": "lib/rust/vdj_asm_utils/src/utils.rs",
"sha256": "fb35b9904c30ba49bbf5e6e7d05c3dd77871afa2f51968e9c9248a5a3764ec0e",
"language": "Rust",
"lines": 239,
"truncated": false,
"block": 1,
"row": 10887
},
{
"path": "lib/rust/vdj_filter_barcodes/src/filter_barcode_level.rs",
"sha256": "32b69c55239f213e420146d60ce178140cfadd38434095abc898205b9063a467",
"language": "Rust",
"lines": 653,
"truncated": false,
"block": 1,
"row": 11044
},
{
"path": "lib/rust/vdj_filter_barcodes/src/filter_clonotype_level.rs",
"sha256": "a0b7e1cf4efb584014506da599234074ec519391ef31e309cee58e4e27ff2b95",
"language": "Rust",
"lines": 119,
"truncated": false,
"block": 1,
"row": 10810
},
{
"path": "lib/rust/vdj_filter_barcodes/src/filter_library_level.rs",
"sha256": "4a5da6ebd9e33aa9aa20c959a5fe56ff7c0fd82a6f704c949217978c7b23bbc1",
"language": "Rust",
"lines": 781,
"truncated": false,
"block": 1,
"row": 11066
},
{
"path": "lib/rust/vdj_filter_barcodes/src/filter_log.rs",
"sha256": "d88fd1e5bbf5a057ef8664d620b9d5d22ecc53daae0616d4ee71188ded3e0a93",
"language": "Rust",
"lines": 350,
"truncated": false,
"block": 1,
"row": 10999
},
{
"path": "lib/rust/vdj_filter_barcodes/src/lib.rs",
"sha256": "896420d0628838b173b7bf080458cb1e1486a5aa82c8fdf8da95f7979a92130e",
"language": "Rust",
"lines": 7,
"truncated": false,
"block": 1,
"row": 10631
},
{
"path": "lib/rust/vdj_filter_barcodes/src/pack_dna.rs",
"sha256": "fcc923fd3bdd518c047a9e3ea6ba72eb91869370d4a8f50c9e5bf89181d003da",
"language": "Rust",
"lines": 45,
"truncated": false,
"block": 1,
"row": 10680
},
{
"path": "lib/rust/vdj_proto/src/adapters.rs",
"sha256": "d64539f19b3ae8419d6c25c124a8c4b4182e808b1e380e5b2dae1c15a0b8bddf",
"language": "Rust",
"lines": 526,
"truncated": false,
"block": 1,
"row": 11031
},
{
"path": "lib/rust/vdj_proto/src/io.rs",
"sha256": "af8b707510d3bdc20cc91d95b0687d6d269edc290b9f9f5d3c9897064749681f",
"language": "Rust",
"lines": 419,
"truncated": false,
"block": 1,
"row": 11002
},
{
"path": "lib/rust/vdj_proto/src/lib.rs",
"sha256": "e950703ef3a3eb51f0478c71be472898a9f1dead33602432dbd3a5686ab95f59",
"language": "Rust",
"lines": 7,
"truncated": false,
"block": 1,
"row": 10624
},
{
"path": "lib/rust/vdj_proto/src/types.rs",
"sha256": "2c9f5bdb9e69caf19c70542a22328905ddf862a1c747f8551ba933642eed706a",
"language": "Rust",
"lines": 403,
"truncated": false,
"block": 1,
"row": 11000
},
{
"path": "lib/rust/vdj_reference/src/errors.rs",
"sha256": "4691ec8fa564ef0dec2b49c3cd75c7b670dbb8b98f4a30de412db6473abe0db8",
"language": "Rust",
"lines": 325,
"truncated": false,
"block": 1,
"row": 10961
},
{
"path": "lib/rust/vdj_reference/src/lib.rs",
"sha256": "55b08e73bf9843a72c80b8a2ef8542be13b3e4e8b25be41845ad422022a3e61f",
"language": "Rust",
"lines": 868,
"truncated": false,
"block": 1,
"row": 11063
},
{
"path": "lib/rust/vdj_reference/src/lookup.rs",
"sha256": "248132950f3d4e810f6153ce7cbaf41fec59c8ccc6a728617ea5ebc96c48eeee",
"language": "Rust",
"lines": 294,
"truncated": false,
"block": 1,
"row": 10977
},
{
"path": "lib/rust/vdj_types/src/lib.rs",
"sha256": "84199e5e37b47dbc4f50de6422649ba9965e77289722f08307df1335a5fbc7ee",
"language": "Rust",
"lines": 294,
"truncated": false,
"block": 1,
"row": 10933
},
{
"path": "lib/rust/vector_utils/src/lib.rs",
"sha256": "02b52f7ba89334aefc74d11dcb6d3fffd8c7394c7a34a8cb3023431a7744d6fc",
"language": "Rust",
"lines": 338,
"truncated": false,
"block": 1,
"row": 10983
},
{
"path": "lib/rust/websummary_build/src/lib.rs",
"sha256": "7724073ac7a6cb87d8b476b7dbc752175f7209ef2a12aacd99caaac5bcc4b263",
"language": "Rust",
"lines": 43,
"truncated": false,
"block": 1,
"row": 10695
},
{
"path": "lib/rust/websummary_derive/src/lib.rs",
"sha256": "6c9ee06168fd3f73385197cb6f59558807062b7bab586dcc3bef1ac16c11eb88",
"language": "Rust",
"lines": 72,
"truncated": false,
"block": 1,
"row": 10763
},
{
"path": "lib/typescript/websummary/index.ts",
"sha256": "e358a8c1d2a441bfcafe78fd58501ad3d456996943c04127fbc76c368e627547",
"language": "TypeScript",
"lines": 43,
"truncated": false,
"block": 1,
"row": 12086
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/MetricsTable/hooks.ts",
"sha256": "787c8ef8bf581ddca57ba7316d31dbfeb0695b39de2c17a89bac6a23343e6477",
"language": "TypeScript",
"lines": 36,
"truncated": false,
"block": 1,
"row": 12067
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/MetricsTable/utils.test.ts",
"sha256": "38ee3fef21f0405bca33a75daedf35372e31772ca7a61f08d96f9448fea9fa23",
"language": "TypeScript",
"lines": 57,
"truncated": false,
"block": 1,
"row": 12088
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/MetricsTable/utils.ts",
"sha256": "141fc675673e27e69b7e06f89fdee63213cfd47d97ea47b3591ecd17f3634fb4",
"language": "TypeScript",
"lines": 247,
"truncated": false,
"block": 1,
"row": 12151
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/common.ts",
"sha256": "8b4abb0dd39d8eccd4425c117bd017e2c0bfafe1fd8143018a36dc3d1480720b",
"language": "TypeScript",
"lines": 11,
"truncated": false,
"block": 1,
"row": 12022
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/plateUtils.test.ts",
"sha256": "3b2a02fadca99617dcd979dbbc86212d595ccf30580e3f6a855ddefdbd02299d",
"language": "TypeScript",
"lines": 99,
"truncated": false,
"block": 1,
"row": 12113
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/plateUtils.ts",
"sha256": "5919f47b104f7994b731cd3a5984f952caad8a5b240292b6d1ff09adf16c7fb6",
"language": "TypeScript",
"lines": 55,
"truncated": false,
"block": 1,
"row": 12079
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/plotlyUtils.test.ts",
"sha256": "61e46b3e97907f0e0536e6034edacdf14432e0ff2e216fc4a0458074927bf47b",
"language": "TypeScript",
"lines": 192,
"truncated": false,
"block": 1,
"row": 12138
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/plotlyUtils.ts",
"sha256": "3bfc04fd5661b103de31098cdbca7d5952f3fa69a4d133231246ecdc631e52f6",
"language": "TypeScript",
"lines": 138,
"truncated": false,
"block": 1,
"row": 12128
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/useBeeswarmMetricsData.ts",
"sha256": "cba1c82d2721ad3e111de05427921872d8100d95bf3faec27c4664d8add50468",
"language": "TypeScript",
"lines": 213,
"truncated": false,
"block": 1,
"row": 12144
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/usePlateAlerts.ts",
"sha256": "8eaadebe250f0ca410c9ad51ed0666527f009b643555e9a19016abb9963efa9e",
"language": "TypeScript",
"lines": 98,
"truncated": false,
"block": 1,
"row": 12117
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/usePlateMetricsData.ts",
"sha256": "2d8738bcf84dd97185533dde0b3a624bd5ee63f09c544125682f8d70b01fd181",
"language": "TypeScript",
"lines": 264,
"truncated": false,
"block": 1,
"row": 12154
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/utils.test.ts",
"sha256": "da2bfd505887b55873d3f75040fd347e782bddb471a3a9e3e77650fd56741f75",
"language": "TypeScript",
"lines": 57,
"truncated": false,
"block": 1,
"row": 12093
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/SecitonWithVisualizations/utils.ts",
"sha256": "bf1dfc777e80cc94eb92c5a505c7a3625645f344d9ca0db695e9c2378fc5624c",
"language": "TypeScript",
"lines": 73,
"truncated": false,
"block": 1,
"row": 12097
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/alertUtils.test.ts",
"sha256": "9d2b714a7a308ad91972f62f0708eed5ab7382e13b4278efb7ebcb46ae9b6ae0",
"language": "TypeScript",
"lines": 80,
"truncated": false,
"block": 1,
"row": 12111
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/alertUtils.ts",
"sha256": "69b7dd281c560c207540e6c50ce327cc6ba6a73923fd73357fefc8e2e7197464",
"language": "TypeScript",
"lines": 96,
"truncated": false,
"block": 1,
"row": 12109
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/hooks.ts",
"sha256": "2e095c7271ae3f5a2ad2e38b1b630c392a69bece8b01b8274315b308d78bd12b",
"language": "TypeScript",
"lines": 144,
"truncated": false,
"block": 1,
"row": 12127
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/SampleRollup/types.ts",
"sha256": "299d47ed52d5fe5b69c76269e3152361f0f5b125f847012e9af57f7021a5de91",
"language": "TypeScript",
"lines": 18,
"truncated": false,
"block": 1,
"row": 12041
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/config.test.ts",
"sha256": "8af9d2560a8892797bec6d6eb6b250576f886b823c27a63fcb6d2e4257f6419f",
"language": "TypeScript",
"lines": 51,
"truncated": false,
"block": 1,
"row": 12081
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/multiplex-library.ts",
"sha256": "07af56f0245189d99981fc90f365bb43859b73ca7bfd708042f0781d9f3ad198",
"language": "TypeScript",
"lines": 983,
"truncated": false,
"block": 1,
"row": 12193
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/multiplex-sample.ts",
"sha256": "3181199c03f6420cb59afffd0d1cf9100f602d16d1f5fa56f7c6dee0d01684bb",
"language": "TypeScript",
"lines": 507,
"truncated": false,
"block": 1,
"row": 12183
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/singleplex.ts",
"sha256": "9979a12ad0c79ad71b4ea110ad97cd32fde21c0266d008906a01754c5615c0c2",
"language": "TypeScript",
"lines": 390,
"truncated": false,
"block": 1,
"row": 12168
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/config/types.ts",
"sha256": "0af9e5579f5564d3c284e09bbc2357d7745fa184940e28264293bb19af3439a3",
"language": "TypeScript",
"lines": 23,
"truncated": false,
"block": 1,
"row": 12037
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/consts.ts",
"sha256": "573b0b1238e55bcf37c7d234495a99231ff8b71d09dc91816dc7709e56cb4aa4",
"language": "TypeScript",
"lines": 13,
"truncated": false,
"block": 1,
"row": 12016
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/test-utils.ts",
"sha256": "a25090fc97cc94639a8d8667d69fa7d60a689b83779afb76f7095265cc21e869",
"language": "TypeScript",
"lines": 100,
"truncated": false,
"block": 1,
"row": 12095
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/types.ts",
"sha256": "5712b0959ac6698aec1c8292e108c19a72a173cedb7faf60a2f3440fd403d075",
"language": "TypeScript",
"lines": 222,
"truncated": false,
"block": 1,
"row": 12137
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/utilities.ts",
"sha256": "a313b6408d977e0223ab701a26f6a97a84f825dcc8f97893f0eae16f03cedb37",
"language": "TypeScript",
"lines": 167,
"truncated": false,
"block": 1,
"row": 12131
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/utils.test.ts",
"sha256": "8eab1276a7a989de5ae4b3e73f71cedc4c8869067db17058001c97697bf39e9e",
"language": "TypeScript",
"lines": 53,
"truncated": false,
"block": 1,
"row": 12094
},
{
"path": "lib/typescript/websummary/src/components/OptionalMultiplexedSummary/utils.ts",
"sha256": "8658a5f9a04b5b14b8d264a6b5c6e15b64549bf1fc89fff9783fdafc5a65633e",
"language": "TypeScript",
"lines": 87,
"truncated": false,
"block": 1,
"row": 12099
},
{
"path": "lib/typescript/websummary/src/components/index.ts",
"sha256": "41492161be07794a3df8b9e526270916e3f6215d8a5de7f4f99088878bd99381",
"language": "TypeScript",
"lines": 1,
"truncated": false,
"block": 1,
"row": 12007
},
{
"path": "lib/typescript/websummary/typings/assets.d.ts",
"sha256": "e2b66a06cc215d8f0dcb94d5940f95da40a828e46aa5249ee78e59ad1071727a",
"language": "TypeScript",
"lines": 4,
"truncated": false,
"block": 1,
"row": 12006
},
{
"path": "lib/typescript/websummary/webpack.config.js",
"sha256": "84f07eea79feae4381f6b02ac863cb5eb603bef54c2e749a7887baabaa36d2a1",
"language": "JavaScript",
"lines": 130,
"truncated": false,
"block": 1,
"row": 1237
},
{
"path": "mro/rna/stages/aggregator/aggregator_preflight/__init__.py",
"sha256": "86b304df21c3a62c002035562bf85d5e8e1c057b0eb73859afc4650a0530a053",
"language": "Python",
"lines": 386,
"truncated": false,
"block": 1,
"row": 9159
},
{
"path": "mro/rna/stages/aggregator/build_antigen_aggr_web_summary/__init__.py",
"sha256": "24e6f30aaa077d6a83915be6eed9190508aae9b45ee66b114230181663eae62a",
"language": "Python",
"lines": 70,
"truncated": false,
"block": 1,
"row": 6354
},
{
"path": "mro/rna/stages/aggregator/build_combined_web_summary/__init__.py",
"sha256": "d34d8b170650b4bf84f3da9667d6d8c4a9218914dace63c44426994b7dbfade9",
"language": "Python",
"lines": 99,
"truncated": false,
"block": 1,
"row": 6664
},
{
"path": "mro/rna/stages/aggregator/check_invariants/__init__.py",
"sha256": "a9314e31f17a4b0f0abe2203d54222e58f86731c87f062f15b7c7545f3f968c4",
"language": "Python",
"lines": 276,
"truncated": false,
"block": 1,
"row": 8588
},
{
"path": "mro/rna/stages/aggregator/check_molecule_info_version/__init__.py",
"sha256": "2913c110b142c54081700530ff8b70fa1f2083ddab60bb1e89a50efb99dccc50",
"language": "Python",
"lines": 200,
"truncated": false,
"block": 1,
"row": 8140
},
{
"path": "mro/rna/stages/aggregator/crispr_aggr_input_prep/__init__.py",
"sha256": "8f00ab9ea50f68624ada6342b78767a96fa1f181139976b237e7b0122495fef0",
"language": "Python",
"lines": 52,
"truncated": false,
"block": 1,
"row": 5944
},
{
"path": "mro/rna/stages/aggregator/normalize_depth/__init__.py",
"sha256": "5a84daee2abb1d96bce59670894eeff7d8e9a8f1b7b0e58bd9ee9c7b83abe6b7",
"language": "Python",
"lines": 773,
"truncated": false,
"block": 1,
"row": 9623
},
{
"path": "mro/rna/stages/aggregator/parse_csv/__init__.py",
"sha256": "ff555042dce965d9857189dbd5bb546abea75d4ce618028133a9bd086d9caf03",
"language": "Python",
"lines": 391,
"truncated": false,
"block": 1,
"row": 9010
},
{
"path": "mro/rna/stages/aggregator/setup_samples/__init__.py",
"sha256": "6e7d04d02dbf0c85c3e26c56a13847af03116a83e471a61579b5641c3868a89c",
"language": "Python",
"lines": 137,
"truncated": false,
"block": 1,
"row": 7293
},
{
"path": "mro/rna/stages/aggregator/summarize_aggregated_reports/__init__.py",
"sha256": "d7264f83a72a75f5371ffcad8346d9e3f8441b88fbcdf2484142969a09787d17",
"language": "Python",
"lines": 179,
"truncated": false,
"block": 1,
"row": 7761
},
{
"path": "mro/rna/stages/aggregator/write_matrices/__init__.py",
"sha256": "ed7c7242b8e792d4fcd6bd807399daea945a6543da791b8bfaa688f846df6f88",
"language": "Python",
"lines": 253,
"truncated": false,
"block": 1,
"row": 8334
},
{
"path": "mro/rna/stages/analyzer/analyzer_preflight/__init__.py",
"sha256": "5d2e4f592a795da4a7f549ad2db446057391be150939029649bcd9e7285364c2",
"language": "Python",
"lines": 294,
"truncated": false,
"block": 1,
"row": 8770
},
{
"path": "mro/rna/stages/analyzer/combine_clustering/__init__.py",
"sha256": "2afc5841fda3d5cb223618858780ab5f2c644769e43c64f3999d1efcde8c3de1",
"language": "Python",
"lines": 52,
"truncated": false,
"block": 1,
"row": 5972
},
{
"path": "mro/rna/stages/analyzer/correct_chemistry_batch/__init__.py",
"sha256": "7767c76deeea5f4efe332fa6904242003a43663c210f9945ca661227239b2ee6",
"language": "Python",
"lines": 384,
"truncated": false,
"block": 1,
"row": 8995
},
{
"path": "mro/rna/stages/analyzer/parse_csv/__init__.py",
"sha256": "e670334d75751cd6ae5dd6834153fe71f32dd90d87bacab3c6f329b6907ba247",
"language": "Python",
"lines": 129,
"truncated": false,
"block": 1,
"row": 7063
},
{
"path": "mro/rna/stages/analyzer/pca_prep/__init__.py",
"sha256": "b6e2969c026683e341ab183758273c3ae4b84ec16bf5687e6bc019364f008c5e",
"language": "Python",
"lines": 51,
"truncated": false,
"block": 1,
"row": 6137
},
{
"path": "mro/rna/stages/analyzer/post_pca/__init__.py",
"sha256": "c635e896da2365d0783d441be4e2d05625b8ea734ac82b3055023b564881a092",
"language": "Python",
"lines": 60,
"truncated": false,
"block": 1,
"row": 6305
},
{
"path": "mro/rna/stages/analyzer/preprocess_matrix/__init__.py",
"sha256": "0f3fbaee51b628e0411fc3e6c70a6f220b16f0e798632eec4e9047b54daabe0f",
"language": "Python",
"lines": 279,
"truncated": false,
"block": 1,
"row": 8516
},
{
"path": "mro/rna/stages/analyzer/reanalyze_verify_sample_ids/__init__.py",
"sha256": "5323dcd526e990701b03f5304ed5b5219fa011fb4a189c74d726de9bb6fe05d1",
"language": "Python",
"lines": 47,
"truncated": false,
"block": 1,
"row": 6061
},
{
"path": "mro/rna/stages/analyzer/reanalyzer_preflight/__init__.py",
"sha256": "637212ec18ea115c9f5c3292deb85c1fd073aadae6265b521f9c9f7df56fbb8a",
"language": "Python",
"lines": 57,
"truncated": false,
"block": 1,
"row": 6242
},
{
"path": "mro/rna/stages/analyzer/run_kmeans/__init__.py",
"sha256": "331d8087c3ec615e17367b72bfc0ebdfe0a118acde2f57243086f187a24a2973",
"language": "Python",
"lines": 125,
"truncated": false,
"block": 1,
"row": 7110
},
{
"path": "mro/rna/stages/analyzer/run_multigenome_analysis/__init__.py",
"sha256": "e87e3ec5f2be3751f74febe01a48b9f8dc1ae5a16cc256182788cf1213227092",
"language": "Python",
"lines": 51,
"truncated": false,
"block": 1,
"row": 6053
},
{
"path": "mro/rna/stages/analyzer/run_pca/__init__.py",
"sha256": "b35b00777a7f3ef50ce6716a31890ef052b2d4e9a76b6ea2261f5e040f5810b2",
"language": "Python",
"lines": 89,
"truncated": false,
"block": 1,
"row": 6694
},
{
"path": "mro/rna/stages/analyzer/summarize_analysis/__init__.py",
"sha256": "f700e4c1d36b80203a7f11162bb6fce3ebbfc49037559521fd26dcda59f8294f",
"language": "Python",
"lines": 106,
"truncated": false,
"block": 1,
"row": 6931
},
{
"path": "mro/rna/stages/analyzer/summarize_reanalysis/__init__.py",
"sha256": "824a58a11c37b34e578982e9358928be6da3635366a7d9f2f3384d91ecbd7b17",
"language": "Python",
"lines": 105,
"truncated": false,
"block": 1,
"row": 7019
},
{
"path": "mro/rna/stages/cas_cell_typing/aggregate_cell_type_csv/__init__.py",
"sha256": "7f34b336c635ad784d62218a971d4acaf713d3ef916ca9f26d73eb90983da89f",
"language": "Python",
"lines": 101,
"truncated": false,
"block": 1,
"row": 6756
},
{
"path": "mro/rna/stages/cas_cell_typing/aggregate_cell_type_json/__init__.py",
"sha256": "6922cd4c331a9959d252b401d47e88d63110510b9fa7b21f0c933262e7389213",
"language": "Python",
"lines": 167,
"truncated": false,
"block": 1,
"row": 7563
},
{
"path": "mro/rna/stages/cas_cell_typing/analyze_cell_types/__init__.py",
"sha256": "4ba3c10d47a8bfad4bdc703355e8a29b7538c1b60008b2673f36df0056816173",
"language": "Python",
"lines": 128,
"truncated": false,
"block": 1,
"row": 7364
},
{
"path": "mro/rna/stages/cas_cell_typing/append_cell_types_cloupe/__init__.py",
"sha256": "7253b4e4ce4b037d0bdb7733e56380ec4ecf49a27b4083120cbce6b26d84525a",
"language": "Python",
"lines": 126,
"truncated": false,
"block": 1,
"row": 7288
},
{
"path": "mro/rna/stages/cas_cell_typing/call_azimuth_cell_types/__init__.py",
"sha256": "80d42571dd728e6ae39e6da8ec79644e985430eeef77f58c9c8c0fcd3a1b592e",
"language": "Python",
"lines": 215,
"truncated": false,
"block": 1,
"row": 8063
},
{
"path": "mro/rna/stages/cas_cell_typing/call_cloud_cell_types/__init__.py",
"sha256": "11c93c1be6af2af354d44a0d3e8981c92614d178b63bfbdea236a4b7a80f862d",
"language": "Python",
"lines": 464,
"truncated": false,
"block": 1,
"row": 9216
},
{
"path": "mro/rna/stages/cas_cell_typing/cell_annotation_preflight/__init__.py",
"sha256": "7072fd76ccf19b35b08ed26048b8ad75f9cf3f657a90edad7b32d2e3c2e7fc56",
"language": "Python",
"lines": 235,
"truncated": false,
"block": 1,
"row": 8635
},
{
"path": "mro/rna/stages/cas_cell_typing/cell_typing_demultiplexer/__init__.py",
"sha256": "d67973857de32cf35a8e4f4116b61f3abf34ab00099fc1963827e5479751c559",
"language": "Python",
"lines": 21,
"truncated": false,
"block": 1,
"row": 5453
},
{
"path": "mro/rna/stages/cas_cell_typing/cell_typing_multiplexer/__init__.py",
"sha256": "ff28960d96c1835cbc107e12494f5c2c4a3b6ccdcea3d61401853323e724440c",
"language": "Python",
"lines": 99,
"truncated": false,
"block": 1,
"row": 7032
},
{
"path": "mro/rna/stages/cas_cell_typing/check_cloupe_matrix_consistent/__init__.py",
"sha256": "0df2a851a6dab372024ced23273af910ee6f24bd4f65641cb17b6ceea91efd68",
"language": "Python",
"lines": 66,
"truncated": false,
"block": 1,
"row": 6369
},
{
"path": "mro/rna/stages/cas_cell_typing/cloud_cell_annotation_viable_but_not_requested/__init__.py",
"sha256": "b65bbe80c9ba5627b05b473c8902e744d879bfc8ea2760df09bd031e7c0f613c",
"language": "Python",
"lines": 55,
"truncated": false,
"block": 1,
"row": 6210
},
{
"path": "mro/rna/stages/cas_cell_typing/create_meta_cells/__init__.py",
"sha256": "ddef7452715ea70c768f1428abe8042d4e0a3c4a0cbc3c384d2c28a69123a4b6",
"language": "Python",
"lines": 87,
"truncated": false,
"block": 1,
"row": 6602
},
{
"path": "mro/rna/stages/cas_cell_typing/demux_cloupe_track_name/__init__.py",
"sha256": "f52f3a01b6cf324dbb2d366f41a87e6b8239c53b64d9ca633ad38b06d1562039",
"language": "Python",
"lines": 20,
"truncated": false,
"block": 1,
"row": 5401
},
{
"path": "mro/rna/stages/cas_cell_typing/disable_cas_reporter_stages/__init__.py",
"sha256": "e716af4ff1a9bf4d1fb45a7cdbc68b50da785e2fbef0d128a6dc3ca230eb6bfd",
"language": "Python",
"lines": 39,
"truncated": false,
"block": 1,
"row": 5734
},
{
"path": "mro/rna/stages/cas_cell_typing/extract_loupe_projection/__init__.py",
"sha256": "bf6c8915f4737f8a9f2a46ca3c1e112cc101f45ea9b8d8e1e1166d90fddcdc44",
"language": "Python",
"lines": 48,
"truncated": false,
"block": 1,
"row": 5869
},
{
"path": "mro/rna/stages/cas_cell_typing/get_cell_types_barchart/__init__.py",
"sha256": "7fb9b04d7fdb16675a75b72b1ef5af151aa8f7aebb6e59db521d85d24d95a7b6",
"language": "Python",
"lines": 311,
"truncated": false,
"block": 1,
"row": 8514
},
{
"path": "mro/rna/stages/cas_cell_typing/get_cell_types_box_plot/__init__.py",
"sha256": "0f311055d42f948e8c48e906e930a1b28daa3a2780fb0a7089bf658d47fce979",
"language": "Python",
"lines": 62,
"truncated": false,
"block": 1,
"row": 6065
},
{
"path": "mro/rna/stages/cas_cell_typing/get_cell_types_umap_plot/__init__.py",
"sha256": "ada3614ad45982f18a7730822ccf8813979a4393ec2543c0b4cb4f1916306494",
"language": "Python",
"lines": 49,
"truncated": false,
"block": 1,
"row": 5923
},
{
"path": "mro/rna/stages/cas_cell_typing/get_cloupe_cell_types/__init__.py",
"sha256": "68512f53a73a2c3eabee88ca5a770eecf87309de68aaffa43502f0631a943cd1",
"language": "Python",
"lines": 36,
"truncated": false,
"block": 1,
"row": 5594
},
{
"path": "mro/rna/stages/cas_cell_typing/merge_all_cell_type_metrics/__init__.py",
"sha256": "6741bb9eae66387678a2ef50f13b0874cff6907ebd305d139e61d4ee3faabde1",
"language": "Python",
"lines": 38,
"truncated": false,
"block": 1,
"row": 5756
},
{
"path": "mro/rna/stages/cas_cell_typing/remove_meta_cells_from_cell_types/__init__.py",
"sha256": "3f7193818b47490f6262e78d87be354b058f8865c9bd24bce56e514dfc264438",
"language": "Python",
"lines": 65,
"truncated": false,
"block": 1,
"row": 6237
},
{
"path": "mro/rna/stages/cas_cell_typing/replace_low_umi_cells/__init__.py",
"sha256": "ff187fe91d61dee211029ff6b1c8f151391775f4910ac21cf78dd4b01ea9b16f",
"language": "Python",
"lines": 75,
"truncated": false,
"block": 1,
"row": 6452
},
{
"path": "mro/rna/stages/cas_cell_typing/structify_aggregated_celltypes/__init__.py",
"sha256": "919e52f162396898d98a768ad4cc6b6c303331b8f2b0a24dfecadf2a48a02110",
"language": "Python",
"lines": 44,
"truncated": false,
"block": 1,
"row": 5895
},
{
"path": "mro/rna/stages/cas_cell_typing/structify_cell_annotation_outs/__init__.py",
"sha256": "992bbc4ecf895cadacb220fcadca12de1c94a78e45f9272d39330ea8980416f7",
"language": "Python",
"lines": 186,
"truncated": false,
"block": 1,
"row": 8108
},
{
"path": "mro/rna/stages/cas_cell_typing/structify_websummary_inputs/__init__.py",
"sha256": "dfbc2abedc0d30e2823e2666142b5dccb50ff170b80df23fd9cfd2de1b5f5f1d",
"language": "Python",
"lines": 39,
"truncated": false,
"block": 1,
"row": 5899
},
{
"path": "mro/rna/stages/cas_cell_typing/tidy_celltype_diffexp/__init__.py",
"sha256": "30678478d62ff004cbea54da957a5ce189db394b7b957bd2b283a7f01d896484",
"language": "Python",
"lines": 112,
"truncated": false,
"block": 1,
"row": 7048
},
{
"path": "mro/rna/stages/cas_cell_typing/validate_segmentation_directory/__init__.py",
"sha256": "74016f02bfaf73686ab9369c718cf41e294b5b9e8d07a484de49c98d8137030c",
"language": "Python",
"lines": 48,
"truncated": false,
"block": 1,
"row": 6120
},
{
"path": "mro/rna/stages/cas_cell_typing/write_cell_types_h5/__init__.py",
"sha256": "d9adb8343954b2e596c9ca5edf6a01bfbb59e53dbd5b246b40f30cc62e960b76",
"language": "Python",
"lines": 56,
"truncated": false,
"block": 1,
"row": 6223
},
{
"path": "mro/rna/stages/cloupe/cloupe_preprocess/__init__.py",
"sha256": "4f06148d2943fb8e995e26e079e018a4325af5186be885f2c6aec99311d5794e",
"language": "Python",
"lines": 260,
"truncated": false,
"block": 1,
"row": 8417
},
{
"path": "mro/rna/stages/common/cellranger_preflight/__init__.py",
"sha256": "4146d835eb754cfc0d8e32be211896ebd0fd12bfa052347e4d88228243eb759d",
"language": "Python",
"lines": 109,
"truncated": false,
"block": 1,
"row": 6779
},
{
"path": "mro/rna/stages/common/disable_feature_stages/__init__.py",
"sha256": "de0ed4411999191c3b1a8451ef017640d553d7047b21a970f77d730841c35847",
"language": "Python",
"lines": 140,
"truncated": false,
"block": 1,
"row": 7528
},
{
"path": "mro/rna/stages/common/disable_secondary_analysis/__init__.py",
"sha256": "c5fc41b3f2272fec5334b34cd31055a6001ca8d680e7e1dfc480a9d7b40a7aa1",
"language": "Python",
"lines": 81,
"truncated": false,
"block": 1,
"row": 6707
},
{
"path": "mro/rna/stages/common/make_vdj_config/__init__.py",
"sha256": "a84970bfcf1b65ff24abdf5e1de9bdcdb9675b72739b4bbc3cfbedb5c0cf4606",
"language": "Python",
"lines": 66,
"truncated": false,
"block": 1,
"row": 6311
},
{
"path": "mro/rna/stages/common/parse_target_features/__init__.py",
"sha256": "f8e0e3abed98ab90088ce615fc58d51d5b99f168ba0c28f30a77a71f016f5577",
"language": "Python",
"lines": 158,
"truncated": false,
"block": 1,
"row": 7620
},
{
"path": "mro/rna/stages/counter/filter_barcodes/__init__.py",
"sha256": "8f507fb3263b89fd3811990fa8efd11d331d0c526efd46161160dfcd221159a0",
"language": "Python",
"lines": 863,
"truncated": false,
"block": 1,
"row": 9661
},
{
"path": "mro/rna/stages/counter/get_aggregate_barcodes_out/__init__.py",
"sha256": "696e8ed174cde7b718b7fe51f4fab86b57924363657dfe54a4441b5e19789700",
"language": "Python",
"lines": 72,
"truncated": false,
"block": 1,
"row": 6339
},
{
"path": "mro/rna/stages/counter/subsample_reads/__init__.py",
"sha256": "f9667407f26f9cd1215204abda5b02c5ddadb6818a0ba9791e8ddcf89d8e9ea5",
"language": "Python",
"lines": 159,
"truncated": false,
"block": 1,
"row": 7502
},
{
"path": "mro/rna/stages/counter/summarize_basic_reports/__init__.py",
"sha256": "dca64e54c4ca2319a2faf854581ae8fde8d4a87bf91b1c3557f256877a822471",
"language": "Python",
"lines": 139,
"truncated": false,
"block": 1,
"row": 7467
},
{
"path": "mro/rna/stages/counter/summarize_reports/__init__.py",
"sha256": "13a35a1f4cf74a4c0bec6264f1beb605d0dd334b9f3cc53675301c469bbc8d78",
"language": "Python",
"lines": 190,
"truncated": false,
"block": 1,
"row": 7923
},
{
"path": "mro/rna/stages/feature/antigen_specificity/__init__.py",
"sha256": "89b4dfe393f5c5d61b026931d886f4be2d7e8622d315b7a3c2a4fa385b9ab914",
"language": "Python",
"lines": 216,
"truncated": false,
"block": 1,
"row": 8206
},
{
"path": "mro/rna/stages/feature/call_antibodies/__init__.py",
"sha256": "e382390f948cf44f8947b068b8f5f8805151cfa36f7d383b051234c96b032509",
"language": "Python",
"lines": 175,
"truncated": false,
"block": 1,
"row": 7835
},
{
"path": "mro/rna/stages/feature/call_protospacers/__init__.py",
"sha256": "28650f1d78e2c66b49f7dfdeb5a1d3dd510d65141222a3d2a40ad00d39e4f82a",
"language": "Python",
"lines": 279,
"truncated": false,
"block": 1,
"row": 8636
},
{
"path": "mro/rna/stages/feature/call_tags_jibes/__init__.py",
"sha256": "8056722eb046dd8e777209dbf0595bcd2444179b4081ce691fa583e7df53a45b",
"language": "Python",
"lines": 322,
"truncated": false,
"block": 1,
"row": 8750
},
{
"path": "mro/rna/stages/feature/call_tags_marginal/__init__.py",
"sha256": "66b6a0e1e967299ff6baca98ee72affb351c6b50adaa851dc9bdd28e3eae18f3",
"language": "Python",
"lines": 178,
"truncated": false,
"block": 1,
"row": 7687
},
{
"path": "mro/rna/stages/feature/compute_presplit_assignment/__init__.py",
"sha256": "8d9814bcf2787f28f7660a579750db0afcb02c79ca164938d4d45cd911a64fac",
"language": "Python",
"lines": 217,
"truncated": false,
"block": 1,
"row": 8375
},
{
"path": "mro/rna/stages/feature/infer_gem_well_throughput/__init__.py",
"sha256": "23cca54e7c1f8e66b883932ced5435d3f1949f968c3755d3882f357cdf7ceedf",
"language": "Python",
"lines": 143,
"truncated": false,
"block": 1,
"row": 7519
},
{
"path": "mro/rna/stages/feature/measure_perturbations/__init__.py",
"sha256": "947898d69f78bb2b9064db645eadb4a46bd3af02c3a71e406097e46617747c0c",
"language": "Python",
"lines": 253,
"truncated": false,
"block": 1,
"row": 8435
},
{
"path": "mro/rna/stages/feature/summarize_antibody_analysis/__init__.py",
"sha256": "d7ef976a72419d0778101dc6e250ea7c4aea770c20cd62a0d49e25f526fbfdc5",
"language": "Python",
"lines": 59,
"truncated": false,
"block": 1,
"row": 6004
},
{
"path": "mro/rna/stages/feature/summarize_crispr_analysis/__init__.py",
"sha256": "07b105b7246f8ec955134e551effb64d2facc3cf2127356db93ecd01ee9e7d23",
"language": "Python",
"lines": 105,
"truncated": false,
"block": 1,
"row": 7052
},
{
"path": "mro/rna/stages/make_reference/__init__.py",
"sha256": "b5505114bcd5f90030546f97b9229c688f6eddc0a3fb53bbdf43e91d59e9e291",
"language": "Python",
"lines": 56,
"truncated": false,
"block": 1,
"row": 6081
},
{
"path": "mro/rna/stages/make_vdj_reference/__init__.py",
"sha256": "b009d6cc14ccca7b0608b43ebfcc700aff091288a7d7a44c46abf7629f175fbd",
"language": "Python",
"lines": 68,
"truncated": false,
"block": 1,
"row": 6310
},
{
"path": "mro/rna/stages/multi/build_sample_outs/__init__.py",
"sha256": "58caa1333213a842b7fb8be31a8534b6514ae668968e794c7d7e1bb84913355f",
"language": "Python",
"lines": 80,
"truncated": false,
"block": 1,
"row": 6453
},
{
"path": "mro/rna/stages/multi/choose_cloupe/__init__.py",
"sha256": "df78866185c7d876153a8a1d4c185f9c17744ea855cc6a9530797fef2ce6184c",
"language": "Python",
"lines": 69,
"truncated": false,
"block": 1,
"row": 6219
},
{
"path": "mro/rna/stages/multi/compute_extra_multiplexing_metrics/__init__.py",
"sha256": "eb01f3d909772f2b2794b5e5b48ec841f98f87bf9bfe942c31b395661e23acbc",
"language": "Python",
"lines": 206,
"truncated": false,
"block": 1,
"row": 7967
},
{
"path": "mro/rna/stages/multi/determine_sample_assignments/__init__.py",
"sha256": "05594d550677d9c449702ec6ae4e225d53305826eb2868b4a10b12df2f0db780",
"language": "Python",
"lines": 534,
"truncated": false,
"block": 1,
"row": 9298
},
{
"path": "mro/rna/stages/multi/disable_multi_core_stages/__init__.py",
"sha256": "bddcb38817e3b984158ca13ec9fb6ad0361de08516bdf02c91a9b135642ce458",
"language": "Python",
"lines": 75,
"truncated": false,
"block": 1,
"row": 6445
},
{
"path": "mro/rna/stages/multi/disable_stages/__init__.py",
"sha256": "d8dfbf3b07210fdb98316d88211347e34bd41a98e3e73565cc8550e9de7bc9fc",
"language": "Python",
"lines": 75,
"truncated": false,
"block": 1,
"row": 6408
},
{
"path": "mro/rna/stages/multi/generate_library_plots/__init__.py",
"sha256": "c127a31f67f9cc38e3fa31195312a23ffb7c959069857b1e6ce5500efa22ede6",
"language": "Python",
"lines": 246,
"truncated": false,
"block": 1,
"row": 8327
},
{
"path": "mro/rna/stages/multi/generate_sample_plots/__init__.py",
"sha256": "a775f326ebc16216726b7af29badca3df1c92888ed61350951cdd7ea7e34c164",
"language": "Python",
"lines": 201,
"truncated": false,
"block": 1,
"row": 7997
},
{
"path": "mro/rna/stages/multi/multi_write_per_sample_matrices/__init__.py",
"sha256": "12d3b7dd3cb3ae13c839a35df588b3758a107a2ec6f1951d679f9b6e93d0b895",
"language": "Python",
"lines": 286,
"truncated": false,
"block": 1,
"row": 8364
},
{
"path": "mro/rna/stages/multi/multiplexing_method/__init__.py",
"sha256": "8d8c610c4e7b548c49a723a5d35e64914cd2094cd8dcc199b0c87ccb1fdca5f2",
"language": "Python",
"lines": 97,
"truncated": false,
"block": 1,
"row": 6907
},
{
"path": "mro/rna/stages/multi/sanitize_map_calls/__init__.py",
"sha256": "dce967a0cf7c3d2b73f9dbda4ba39b3e6de151cf98c865d8f5fd2f8cbedadb62",
"language": "Python",
"lines": 204,
"truncated": false,
"block": 1,
"row": 8126
},
{
"path": "mro/rna/stages/multi/structify_per_sample_outs/__init__.py",
"sha256": "055460e65efebbe679918816234339d6b660412ca749a5e8e22036bd26191400",
"language": "Python",
"lines": 272,
"truncated": false,
"block": 1,
"row": 8371
},
{
"path": "mro/rna/stages/spatial/create_hd_websummary_image/__init__.py",
"sha256": "0ec488be87b0b4c6b7bfea2fa6c60e3ae266980c8117f4929a6cf9aa678586a2",
"language": "Python",
"lines": 55,
"truncated": false,
"block": 1,
"row": 6313
},
{
"path": "mro/rna/stages/spatial/segmentation_spatial_plots/__init__.py",
"sha256": "77bfe9bc63370de85143c7bb17ff232b6fd17964cdef5ee2fc3e104b1a9d29f4",
"language": "Python",
"lines": 347,
"truncated": false,
"block": 1,
"row": 8818
},
{
"path": "mro/rna/stages/targeted/calculate_targeted_metrics/__init__.py",
"sha256": "045288d87cabf3c2d225ef4cc0e1c7edf6589dc2c71b0f8d3c3aac9958cdf283",
"language": "Python",
"lines": 447,
"truncated": false,
"block": 1,
"row": 9303
},
{
"path": "mro/rna/stages/targeted/disable_targeted_stages/__init__.py",
"sha256": "3322fd1e36828a90536f32122e4e59edebd5bc58f61e79f29930891112c8c084",
"language": "Python",
"lines": 63,
"truncated": false,
"block": 1,
"row": 6429
},
{
"path": "mro/rna/stages/targeted/get_gdna_plot/__init__.py",
"sha256": "493b6c3a1e493554cd2db12d41b9fe5887c0f3d719dddd98d54a97089252f655",
"language": "Python",
"lines": 74,
"truncated": false,
"block": 1,
"row": 6487
},
{
"path": "mro/rna/stages/vdj/build_aggr_web_summary/__init__.py",
"sha256": "2b5fa8df99e58939168e28b1b58647d55579110c5a574476d2e5bc20f26531af",
"language": "Python",
"lines": 55,
"truncated": false,
"block": 1,
"row": 6029
},
{
"path": "mro/rna/stages/vdj/clonotype_diversity/__init__.py",
"sha256": "9e4ffc6ff327e24118ce7f98181855b70b72c02304dd5c511a007fb8c6092d64",
"language": "Python",
"lines": 460,
"truncated": false,
"block": 1,
"row": 9068
},
{
"path": "mro/rna/stages/vdj/pick_vdj_outs/__init__.py",
"sha256": "b07e55e9dcf747770f802ce6d9d759e760ce9cee9dc6c40703a3e620e029ec58",
"language": "Python",
"lines": 66,
"truncated": false,
"block": 1,
"row": 6228
},
{
"path": "mro/rna/stages/vdj/report_contigs/__init__.py",
"sha256": "387ba0538a20028368a00e5a68bf96b9ea8c4b07f11c75853c3f4c0b57768aab",
"language": "Python",
"lines": 192,
"truncated": false,
"block": 1,
"row": 7744
},
{
"path": "mro/rna/stages/vdj/split_vdj_inputs/__init__.py",
"sha256": "1284e1af750361b7c0f69b41a347ddddb6ef83625f33e9d38999b2fafe231530",
"language": "Python",
"lines": 128,
"truncated": false,
"block": 1,
"row": 7501
},
{
"path": "mro/rna/stages/vdj/summarize_reports/__init__.py",
"sha256": "20ed9202f4e61374aa994bd3ed0f076bebaff53f6392ede570a8531af294d3ec",
"language": "Python",
"lines": 110,
"truncated": false,
"block": 1,
"row": 6894
},
{
"path": "mro/rna/stages/vdj/vdj_preflight/__init__.py",
"sha256": "5e79a750ab84ef69e789008e335ee2da1c12f1550c986b2b3c556101808ed2f7",
"language": "Python",
"lines": 86,
"truncated": false,
"block": 1,
"row": 6563
},
{
"path": "mro/rna/stages/vloupe/vloupe_preprocess/__init__.py",
"sha256": "9eea44308a7871983bb0f5927ad72168be06d15294f5762cccc8127312b2076e",
"language": "Python",
"lines": 110,
"truncated": false,
"block": 1,
"row": 7010
},
{
"path": "mro/tenkit/stages/make_fastqs/bcl2fastq_with_samplesheet/__init__.py",
"sha256": "467a338c242658840d3af03d6832303364ffdf440023a0a8942296e52fc6de54",
"language": "Python",
"lines": 207,
"truncated": false,
"block": 1,
"row": 7965
},
{
"path": "mro/tenkit/stages/make_fastqs/make_fastqs_preflight/__init__.py",
"sha256": "21c87ba308f98225ef6b48d03773cf7f6fdb4d24ad4cf8b6502447828fb9e8fa",
"language": "Python",
"lines": 66,
"truncated": false,
"block": 1,
"row": 6188
},
{
"path": "mro/tenkit/stages/make_fastqs/make_fastqs_preflight_local/__init__.py",
"sha256": "c5e70ab0cd583dfefe020d45a7abaafab451327c2109422eef7787b5490f3500",
"language": "Python",
"lines": 172,
"truncated": false,
"block": 1,
"row": 7671
},
{
"path": "mro/tenkit/stages/make_fastqs/merge_fastqs_by_lane_sample/__init__.py",
"sha256": "5cc501341b3248d8eb3834bf932aa82b05f28c75b768c016fb2a9dcdf71f3667",
"language": "Python",
"lines": 303,
"truncated": false,
"block": 1,
"row": 8813
},
{
"path": "mro/tenkit/stages/make_fastqs/prepare_samplesheet/__init__.py",
"sha256": "5ca8cdb352f35ec30dab3af4698e362d304996e3b847565d976d233b1f22b490",
"language": "Python",
"lines": 223,
"truncated": false,
"block": 1,
"row": 8348
},
{
"path": "third-party/build_opencv.sh",
"sha256": "f20c0d1ba3328eff726aa7f5c0e757cbec1a9b2ba8d2d6dcb0871ce3f92ebf31",
"language": "Shell",
"lines": 262,
"truncated": false,
"block": 1,
"row": 11742
}
]
}