Datasets:
Scripts of 2026-09-27: 2 new block(s), 375 manifest(s), 0 removed
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- LICENSE.md +5 -0
- README.md +67 -0
- blocks/00001.parquet +3 -0
- blocks/00002.parquet +3 -0
- manifests/00/github.com__uva-liu__uva-liu-uva-insular-ieeg-neuropathic-pain-analysis.json +93 -0
- manifests/02/github.com__brsynth__amn_release.json +183 -0
- manifests/02/github.com__scan-nrad__dl-direct.json +147 -0
- manifests/02/zenodo__20798972.json +273 -0
- manifests/02/zenodo__20819668.json +48 -0
- manifests/04/github.com__rpomponio__neuroharmonize.json +120 -0
- manifests/04/github.com__younesvalibeigi__coupled-cardiac-system.json +0 -0
- manifests/05/github.com__tferr__scripts.json +381 -0
- manifests/05/zenodo__22011941.json +273 -0
- manifests/06/github.com__allenneuraldynamics__aind-ephys-visualization.json +48 -0
- manifests/06/github.com__languagemit__naturalstories.json +75 -0
- manifests/07/github.com__sofiakouki__frost-action-classification.json +174 -0
- manifests/07/github.com__tommyclausner__mri-volume-masker-3000-tm.json +39 -0
- manifests/09/github.com__waadgo__raven.json +2541 -0
- manifests/0d/github.com__riichirohira__brainmodules.json +30 -0
- manifests/0d/github.com__sdpenna66__smarterd.json +57 -0
- manifests/0e/github.com__andrelmartins__tunits.json +75 -0
- manifests/0e/zenodo__20736463.json +84 -0
- manifests/10/github.com__mic-dkfz__nnunet.json +1524 -0
- manifests/11/github.com__aswendt-lab__aidamri.json +984 -0
- manifests/11/github.com__noamteyssier__idea.json +84 -0
- manifests/11/github.com__unimelbmdap__snakemake_paper_demo_workflow_data.json +30 -0
- manifests/11/zenodo__20103609.json +750 -0
- manifests/11/zenodo__21964069.json +570 -0
- manifests/12/github.com__danko-lab__proseq2.0.json +30 -0
- manifests/12/github.com__narayanps__jedimeg.json +948 -0
- manifests/12/zenodo__10855006.json +21 -0
- manifests/12/zenodo__16998131.json +39 -0
- manifests/13/github.com__ysu001__pup.json +2505 -0
- manifests/13/github.com__zhangwy49__multi-task-amp-discriminator-based-on-multi-scale-feature-fusion-and-amp-generator-guided-by-mic.json +291 -0
- manifests/14/zenodo__20543385.json +381 -0
- manifests/16/github.com__sohilaosama__covid-19.json +210 -0
- manifests/16/github.com__stratton-lab__bigotte-2025-cilia.json +39 -0
- manifests/17/github.com__allenneuraldynamics__aind-ephys-processing-qc.json +48 -0
- manifests/17/github.com__lugia-xiao__ndreamer_reproducible.json +273 -0
- manifests/17/zenodo__21428706.json +21 -0
- manifests/18/zenodo__20137621.json +111 -0
- manifests/18/zenodo__20840795.json +255 -0
- manifests/19/figshare__31209973.json +57 -0
- manifests/19/github.com__10xgenomics__cellranger.json +0 -0
- manifests/19/github.com__asromer-biology__romer_et_al_2026_python_prioritization.json +57 -0
- manifests/1a/zenodo__14770236.json +30 -0
- manifests/1b/github.com__jorvalgl__thresholderer.json +30 -0
- manifests/1b/github.com__mica-mni__micaflow.json +408 -0
- manifests/1b/github.com__rajanlab__curbd.json +93 -0
- manifests/1b/github.com__tkzeng__pangolin.json +84 -0
LICENSE.md
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# Licenses
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This dataset has no license of its own. Every file keeps the license of the repository
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it comes from, recorded in that repository's manifest (`manifests/…/<repository>.json`,
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fields `license` and `license_confirmed_by`), with the repository's URL and commit.
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README.md
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---
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+
license: other
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+
license_name: per-file
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+
license_link: LICENSE.md
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| 5 |
+
pretty_name: Open Scientific Code Registry (OSCR) scripts
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| 6 |
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tags:
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- neuroscience
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- research-software
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- code
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- reproducibility
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configs:
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- config_name: scripts
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data_files: blocks/*.parquet
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---
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# Open Scientific Code Registry (OSCR): the authors' scripts
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| 17 |
+
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+
The code published by the authors of open-access neuroscience papers, as found and
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| 19 |
+
verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified
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| 20 |
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commit, **under the license of its repository**.
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+
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- **14,864 unique files** (127 MB of text) from **375 repositories**,
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+
in 2 Parquet block(s).
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| 24 |
+
- **Only files whose repository's license allows redistribution**, confirmed by the
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| 25 |
+
repository's own license file (or, for an archive without one, by its record). Files
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| 26 |
+
without such a license are never copied here: Open Scientific Code Registry (OSCR) links to them at the source.
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- No text of any paper.
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+
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## Layout
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| 30 |
+
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- `blocks/NNNNN.parquet`: one row per unique file (SHA-256 of its text):
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| 32 |
+
`sha256`, `language`, `size`, `lines`, `content`. zstd page compression, 64 rows per
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| 33 |
+
row group: a single file can be read with HTTP range requests (for example with
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| 34 |
+
hyparquet in a browser). A published block never changes; new files go into new
|
| 35 |
+
blocks.
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| 36 |
+
- `manifests/<xx>/<repository>.json`: per repository, its URL, commit and license, and
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| 37 |
+
for each file its path, digest, and the (block, row) holding its text.
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| 38 |
+
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| 39 |
+
## Licenses
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| 40 |
+
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| 41 |
+
Each file keeps the license of its repository, given in the repository's manifest
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| 42 |
+
(`license`, `license_confirmed_by`). Repositories by license:
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| 43 |
+
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| 44 |
+
| license | repositories |
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+
|---|---|
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| MIT | 178 |
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+
| CC-BY-4.0 | 72 |
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| 48 |
+
| GPL-3.0 | 52 |
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| 49 |
+
| Apache-2.0 | 22 |
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| 50 |
+
| BSD-3-Clause | 17 |
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| 51 |
+
| CC0-1.0 | 10 |
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| 52 |
+
| GPL-2.0 | 5 |
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| 53 |
+
| CC-BY-NC-SA-4.0 | 5 |
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| 54 |
+
| BSD-2-Clause | 4 |
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| 55 |
+
| AGPL-3.0 | 3 |
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| 56 |
+
| CC-BY-NC-ND-4.0 | 2 |
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| 57 |
+
| CC-BY-NC-4.0 | 2 |
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| 58 |
+
| other-open | 1 |
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| 59 |
+
| LGPL-3.0 | 1 |
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| 60 |
+
| CC-BY-SA-4.0 | 1 |
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+
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Files under a non-commercial license (CC BY-NC…) may only be reused non-commercially.
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+
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## Takedown
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+
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An author who wants a file removed: open an issue at
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https://github.com/yannbellec/Open-Scientific-Code-Registry-OSCR-/issues.
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blocks/00001.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:1ce7743a7c8238427006d963e0cbcfa4ea29e7d54fd41f2ade4f4591efcd1634
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size 19762427
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blocks/00002.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:7830bb81db406ca092745accfc7461db7f2045462e22018388455a1300995839
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+
size 4395109
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manifests/00/github.com__uva-liu__uva-liu-uva-insular-ieeg-neuropathic-pain-analysis.json
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{
|
| 2 |
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"format": "oscr-script-manifest/1",
|
| 3 |
+
"repository": "github.com/uva-liu/uva-liu-uva-insular-ieeg-neuropathic-pain-analysis",
|
| 4 |
+
"url": "https://github.com/UVA-LIU/UVA-LIU-uva-insular-iEEG-neuropathic-pain-analysis",
|
| 5 |
+
"host": "github.com",
|
| 6 |
+
"commit": "a9e7743c02a909f149875feb810ba3a0ca7bf5c3",
|
| 7 |
+
"license": "MIT",
|
| 8 |
+
"license_confirmed_by": "license file LICENSE",
|
| 9 |
+
"redistribution": "yes",
|
| 10 |
+
"files": [
|
| 11 |
+
{
|
| 12 |
+
"path": "LICENSE",
|
| 13 |
+
"sha256": "618b16e82fa2b1f7f78889be3d930fb66f65f0e32bb1fc3a676d1d62a8272980",
|
| 14 |
+
"language": "License",
|
| 15 |
+
"lines": 21,
|
| 16 |
+
"truncated": false,
|
| 17 |
+
"block": 1,
|
| 18 |
+
"row": 2085
|
| 19 |
+
},
|
| 20 |
+
{
|
| 21 |
+
"path": "README.md",
|
| 22 |
+
"sha256": "ecb7804afa39ae94a967769e6660099c12bdd907e935df4606147144d66315a9",
|
| 23 |
+
"language": "Text",
|
| 24 |
+
"lines": 128,
|
| 25 |
+
"truncated": false,
|
| 26 |
+
"block": 1,
|
| 27 |
+
"row": 11875
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"path": "build_bipolar_montage.m",
|
| 31 |
+
"sha256": "2c230c193bfad5fe8dd0877f3823064a1ef654548c7a3d8204f5190689f13962",
|
| 32 |
+
"language": "MATLAB",
|
| 33 |
+
"lines": 427,
|
| 34 |
+
"truncated": false,
|
| 35 |
+
"block": 1,
|
| 36 |
+
"row": 4139
|
| 37 |
+
},
|
| 38 |
+
{
|
| 39 |
+
"path": "build_connectivity_longtable.m",
|
| 40 |
+
"sha256": "2770153ec3db3a596cab1eb2f4f076f966cbe0ebf12ac5f8b3e6903d2f9b9368",
|
| 41 |
+
"language": "MATLAB",
|
| 42 |
+
"lines": 196,
|
| 43 |
+
"truncated": false,
|
| 44 |
+
"block": 1,
|
| 45 |
+
"row": 3737
|
| 46 |
+
},
|
| 47 |
+
{
|
| 48 |
+
"path": "compute_psd_metrics.m",
|
| 49 |
+
"sha256": "b7ff416805774b95ca3b7eb454958760ed0637421a5710641966cfc0a4cba3a4",
|
| 50 |
+
"language": "MATLAB",
|
| 51 |
+
"lines": 174,
|
| 52 |
+
"truncated": false,
|
| 53 |
+
"block": 1,
|
| 54 |
+
"row": 3626
|
| 55 |
+
},
|
| 56 |
+
{
|
| 57 |
+
"path": "run_all_analysis.m",
|
| 58 |
+
"sha256": "5648c9c3fd9e4039de18df2fe9df8a3bb2b49d96e1987de253dee690218dd650",
|
| 59 |
+
"language": "MATLAB",
|
| 60 |
+
"lines": 83,
|
| 61 |
+
"truncated": false,
|
| 62 |
+
"block": 1,
|
| 63 |
+
"row": 3318
|
| 64 |
+
},
|
| 65 |
+
{
|
| 66 |
+
"path": "run_bipolar_qc.m",
|
| 67 |
+
"sha256": "f24a3f32ad3a2197c7b1b36a71e7f3fb7d2c15b50cadcd0d4434af9a367d6068",
|
| 68 |
+
"language": "MATLAB",
|
| 69 |
+
"lines": 174,
|
| 70 |
+
"truncated": false,
|
| 71 |
+
"block": 1,
|
| 72 |
+
"row": 3705
|
| 73 |
+
},
|
| 74 |
+
{
|
| 75 |
+
"path": "run_connectivity_lme_models.m",
|
| 76 |
+
"sha256": "d33bd2e873aec1b5cfedddee7e61074c727a68e16fe3665b76f9eb63b6069e91",
|
| 77 |
+
"language": "MATLAB",
|
| 78 |
+
"lines": 422,
|
| 79 |
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"truncated": false,
|
| 80 |
+
"block": 1,
|
| 81 |
+
"row": 4177
|
| 82 |
+
},
|
| 83 |
+
{
|
| 84 |
+
"path": "run_psd_lme_models.m",
|
| 85 |
+
"sha256": "a3d0fb799327722241cf3b213477b0c2abac05603696eb9ebb68ba039bdc9f4c",
|
| 86 |
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"language": "MATLAB",
|
| 87 |
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"lines": 303,
|
| 88 |
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"truncated": false,
|
| 89 |
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"block": 1,
|
| 90 |
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"row": 4101
|
| 91 |
+
}
|
| 92 |
+
]
|
| 93 |
+
}
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manifests/02/github.com__brsynth__amn_release.json
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| 1 |
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|
| 1 |
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{
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| 2 |
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"format": "oscr-script-manifest/1",
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| 3 |
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"repository": "github.com/waadgo/raven",
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| 4 |
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"url": "https://github.com/waadgo/raven",
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| 5 |
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"host": "github.com",
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| 6 |
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| 7 |
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"license": "MIT",
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| 8 |
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"license_confirmed_by": "license file License.txt",
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| 9 |
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"redistribution": "yes",
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| 10 |
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| 11 |
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| 12 |
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| 13 |
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@@ -0,0 +1,1524 @@
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|
| 1 |
+
{
|
| 2 |
+
"format": "oscr-script-manifest/1",
|
| 3 |
+
"repository": "github.com/mic-dkfz/nnunet",
|
| 4 |
+
"url": "https://github.com/MIC-DKFZ/nnUNet/tree/master",
|
| 5 |
+
"host": "github.com",
|
| 6 |
+
"commit": "202f6baa0adc2ef5f7b615df19cc4da970412cc0",
|
| 7 |
+
"license": "Apache-2.0",
|
| 8 |
+
"license_confirmed_by": "license file LICENSE",
|
| 9 |
+
"redistribution": "yes",
|
| 10 |
+
"files": [
|
| 11 |
+
{
|
| 12 |
+
"path": ".github/scripts/safe-label.sh",
|
| 13 |
+
"sha256": "4d884fcf72cc20ff00160682124462c00970c030a4093aed45b60bf26c38c90e",
|
| 14 |
+
"language": "Shell",
|
| 15 |
+
"lines": 46,
|
| 16 |
+
"truncated": false,
|
| 17 |
+
"block": 1,
|
| 18 |
+
"row": 11624
|
| 19 |
+
},
|
| 20 |
+
{
|
| 21 |
+
"path": ".github/scripts/safe-pr-review.sh",
|
| 22 |
+
"sha256": "6c438133e4e13a65473063197c38aa9be503f0cac35fb44a94e0fd7c9275b41e",
|
| 23 |
+
"language": "Shell",
|
| 24 |
+
"lines": 29,
|
| 25 |
+
"truncated": false,
|
| 26 |
+
"block": 1,
|
| 27 |
+
"row": 11486
|
| 28 |
+
},
|
| 29 |
+
{
|
| 30 |
+
"path": "LICENSE",
|
| 31 |
+
"sha256": "ff93b6fdf1d59f7c48ca7f44f2d0db47bb7743a1c6fa0f4c5f4d7809f78ce70e",
|
| 32 |
+
"language": "License",
|
| 33 |
+
"lines": 201,
|
| 34 |
+
"truncated": false,
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| 1 |
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| 2 |
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ADDED
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| 1 |
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manifests/13/github.com__zhangwy49__multi-task-amp-discriminator-based-on-multi-scale-feature-fusion-and-amp-generator-guided-by-mic.json
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| 1 |
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