sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
6fb720f2bbc7ca4efac2875c88f7a62cb5b0aa3306ff5ec218cf4b3bc6b7f60b | Shell | 2,305 | 45 | #!/bin/bash
# Output file for HTCondor submit
submit_file="submit_CV_AutoGluon_SHIP_Stroop_NAI.submit"
# Clear the existing submit file if it exists
> $submit_file
# Define the number of cores (CPUs)
num_cores=2
# Write the environment settings to the submit file
echo "# The environment" >> $submit_file
echo "unive... |
d4409e6259d25f6c9664735ef866022784bf94b89530ebc81ebda3ec686b0837 | Shell | 2,308 | 67 | #!/bin/sh
# Written by Yapei Xie and CBIG under MIT license:
# https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
#####
# This script calls the matlab function to run KRR. User needs to provide the following variables.
# 1. feature_path: path to feature mat file
# 2. outdir: output directory
# 3. sites: number... |
d6e1fe3444f6593715e92feb6bfd9f39d2ca031762a72c15028af6ee2fedb6ce | Shell | 2,308 | 67 | #!/bin/sh
# Written by Yapei Xie and CBIG under MIT license:
# https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
#####
# This script calls the matlab function to run KRR. User needs to provide the following variables.
# 1. feature_path: path to feature mat file
# 2. outdir: output directory
# 3. sites: number... |
ee809e9aeeea6dc2113e2481303b862f8cf1a492f245380c12c574ace52d29ed | Shell | 2,310 | 67 | #!/bin/bash
# from Washington-University/Pipelines/global/scripts/Rotate_bvecs.sh
#fix grep argument after pattern
unset POSIXLY_CORRECT
if [ "$3" == "" ] ; then
echo "Usage: <original bvecs> <affine matrix> <rotated (output) bvecs>"
echo ""
echo "<affine matrix> is a FLIRT affine"
echo ""
exit 1;
fi
input=$1... |
a1a6727f0a5990ea4efde5945a58a28013298c6123f83118d5689811c0e5e109 | Shell | 2,311 | 61 | #!/bin/bash
#
# CREATED USING THE BIOHPC PORTAL on Fri Jun 21 2019 22:56:40 GMT-0500 (Central Daylight Time)
#
# This file is batch script used to run commands on the BioHPC cluster.
# The script is submitted to the cluster using the SLURM `sbatch` command.
# Lines starting with # are comments, and will not be run.
# L... |
c33de783800a25355cb6157bade13e7172fa9548a55fde30d9d1477ff7db10bd | Shell | 2,313 | 45 | #!/bin/sh
#/media/StorageOne/HTS/VirusMeta/ffp/block_ffp.sh /media/StorageOne/HTS/PublicData/nt_pb/family /media/StorageOne/HTS/PublicData/nt_pb/virus_block_ffp_9 /media/StorageOne/HTS/PublicData/nt_pb/virus_genomes_blockffp_9 9 /media/StorageOne/HTS/PublicData/nt_pb/blockffp_9_final /media/StorageOne/HTS/PublicData/n... |
c6a09e68b19d4fb3590f471c8783a65c5ddb59e3b4cfe1c7c3cf62d8342a70d3 | Shell | 2,314 | 42 | #!/bin/bash
# this function runs all the kernel regressions in Chen & Tam 2021 paper
#
# Written by Jianzhong Chen and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
top_outdir=$1
###################################################################################################
# ... |
492fac47fe23ca9ce5bc4e3a5de69810da432cc7edafaf5750e942a75cfa3b87 | Shell | 2,316 | 45 | ##########################################################################################################################
## CCS SCRIPT TO DO QUALITY ASSURANCE OF FUNCTIONAL IMAGE REGISTRATION
##
## !!!!!*****ALWAYS CHECK YOUR REGISTRATIONS*****!!!!!
##
## for more information see lfcd.psych.ac.cn/ccs.html
## R-fMRI m... |
ae64b15f7e627356c45e503fc9b937b40ac48a7a321a9f3643dd160423615352 | Shell | 2,319 | 77 | #!/bin/bash
#SBATCH --nodes=1
#SBATCH --partition=gpus
#SBATCH --time=300:00:00
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=32
#SBATCH --exclude=lnx-cm-21008
#SBATCH --job-name=sepoffRM
#SBATCH --error=joblog_error_%j.txt
#SBATCH --output=joblog_output_%j.txt
echo $SLURM_SUBMIT_DIR
echo "Running on `hostname`"
# Data... |
c930deac31f90ad570b1d62599bdf4461165c419390d8502e5bb8e5c5256537e | Shell | 2,321 | 61 | PLATFORM='hifi'
INPUT_DIR="${HOME}/clair3_pacbio_hifi_quickDemo"
OUTPUT_DIR="${INPUT_DIR}/output"
THREADS=4
## Create local directory structure
mkdir -p ${INPUT_DIR}
mkdir -p ${OUTPUT_DIR}
# Download quick demo data
#GRCh38_no_alt Reference
wget -P ${INPUT_DIR} http://www.bio8.cs.hku.hk/clair3/demo/quick_demo/pacbio_... |
19dee7dddfab00557c5e5f4061d242193d54c6d41fd5430a62fba69394010f40 | Shell | 2,326 | 33 | #!/usr/bin/env bash
#This is a script for running sequential metagenomics analysis pipeline
SAMPLES=13
for i in {1..$SAMPLES}
do
#Align
bwa mem -t 56 /db/index/hg19/hg19_unmasked /data/fastq/forward$i.fq.gz /data/fastq/reverse$i.fq.gz > out/aligned$i.sam
samtools sort -@ 56 out/a... |
ac6919a6229bb77ef913015757efd013d0d9481848727dad0dbee7a569a0e3ef | Shell | 2,326 | 106 | #!/bin/bash
CYC="\033[1;36m"
MGC="\033[1;35m"
BLC="\033[1;34m"
YLC="\033[1;33m"
GRC="\033[1;32m"
RDC="\033[1;31m"
NOC="\033[0m"
CMAKE_DIR="cmake"
BUILD_DIR="${CMAKE_DIR}/build"
NO_INSTALL="false"
CLEAR="false"
DRY_RUN="false"
VERBOSE="false"
SHOW_HELP="false"
if [[ "$#" -gt "0" ]]; then
for ARG in "$@"; do
if... |
825840644bfc314958280c6c6d63cb5031e796b9d4ef436d89ebf8aa0000f761 | Shell | 2,330 | 69 | #!/usr/bin/env bash
umask u+rw,g+rw # give group read/write permissions to all new files
set -e # stop immediately on error
# ---------- #
# USAGE
# ---------- #
usage() {
cat <<EOF
Setup the instructions for FUN rs-fMRI preprocessing. Sites to choose from:
sma, psma, pgacc, fpc, lofc, amyg, midsts, control, ppsma... |
41075fe0d087ef390ecfc574c42263f659b6e97048e6b5403968a815eef2017b | Shell | 2,334 | 71 | #!/bin/sh
#####
# This wrapper script submits job to the schduler to run LRR in the HCP dataset.
# This runs the prediction procedure (10-fold cross validation).
#
# Input:
# -min:
# An integer indicating which FC to run regression for.
#
# -vers:
# The manner in which FC was calculated (See FC generatio... |
3f300a1d529e87fc033ead96b16d226e9919ffd8a48e331d873d311b4eb78b4d | Shell | 2,337 | 47 | #!/bin/sh
#/media/StorageOne/HTS/VirusMeta/ffp/ffp.sh /media/StorageOne/HTS/PublicData/nt_pb/family /media/StorageOne/HTS/PublicData/nt_pb/virus_step1_ffp_9 /media/StorageOne/HTS/PublicData/nt_pb/virus_genomes_ffp_9 9 /media/StorageOne/HTS/PublicData/nt_pb/ffp_9_final /media/StorageOne/HTS/PublicData/nt_pb/VIR_unique_... |
5bcb45cb8864547684290b158e762211acc9de24cc43330c029a74dc68858784 | Shell | 2,337 | 65 | #!/bin/bash
#SBATCH --job-name=soWINNOWMAP
#SBATCH --partition=gpus
#SBATCH --time=100:00:00
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=32
#SBATCH --mem=500G
#SBATCH --error=joblog_error_winnowmap_%A.txt
#SBATCH --output=joblog_output_winnowmap_%A.txt
path_micromamba="/gpfs/scic/software/biotools/micromamba/bin"
path... |
d1ed6b12bee46cfcb9653f81f7dc314932ef720e9fb573f51db456372cdc33f0 | Shell | 2,339 | 98 | #!/bin/bash
SCRIPTS_PATH=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
SOURCE_PATH=$SCRIPTS_PATH/../..
BUILD_PATH=$SOURCE_PATH/build
INSTALL_PATH=$SOURCE_PATH/pymeshlab
NIGHTLY_OPTION=""
USE_BREW_LLVM=false
QT_DIR=""
CCACHE=""
#check parameters
for i in "$@"
do
case $i in
-b=*|--build_path=*)
BUILD_PA... |
5584dcf81cd525d31075a1a2b1e585dd37b1471cbb842c9e3f7f2a64df6b3453 | Shell | 2,340 | 68 | #!/bin/bash
# Directory variables (passed as arguments)
FASTQ_DIR=$1 # Directory containing fastq files
OUTPUT_DIR=$2 # Directory for output files
BAM_DIR=$3 # Directory for BAM files
GENOME_INDEX=$4 # Path to HISAT2 genome index
GTF_FILE=$5 # GTF annotation file
NUM_THREADS=12 ... |
0a73cb9932c0b100884593f373ece55b27834f28b7014475edb0edfa6c8bb090 | Shell | 2,347 | 28 | #!/usr/bin/env bash
#See below to set yarn and executor memory options right
#http://stackoverflow.com/questions/38331502/spark-on-yarn-resource-manager-relation-between-yarn-containers-and-spark-execu
#example parameters (data must be in /path/to/contigs in fasta format directory must exist)
#./blast_search.sh /path/... |
17d8fed5161f54335ee196af06df3f17eca63b9fb59d2d44810a5d5b470e8d36 | Shell | 2,350 | 62 | #!/bin/sh
#/media/StorageOne/HTS/VirusMeta/ffp/ffp_step3.sh /media/StorageOne/HTS/PublicData/nt_pb/ffp_7_final /media/StorageOne/HTS/PublicData/nt_pb/virus_genomes_ffp_7 /media/StorageOne/HTS/PublicData/nt_pb/ssDNA_clean_list.txt /media/StorageOne/HTS/PublicData/nt_pb/VIR_unique_taxa_1000.txt
export path_htsa_dir=/me... |
219a5120477b6662a9f667d367f24b6de50b76e84c2f9545f968fe9f5a4f9203 | Shell | 2,354 | 61 | #!/bin/bash
#SBATCH -c 10 # Request cores
#SBATCH -t 2-00:00 # Runtime in D-HH:MM format. Bumped to 2d
# (was 18h, still TIMEOUT on 39983439 +
# 40106803, 2026-05-14/15). Cron fires
... |
4b21aef5f65fdd0c6cd592ab8981062ed531bfd776cf2b283fb3f5a6f5997f63 | Shell | 2,355 | 65 | #!/usr/bin/env bash
#
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by... |
98828f309f7cf00651373cdd6ab8db36733a2f44bfcc0de2701c6d73f1142c76 | Shell | 2,360 | 114 | #!/bin/bash
# Script to download files from RCSB http file download services.
# Use the -h switch to get help on usage.
if ! command -v curl &> /dev/null
then
echo "'curl' could not be found. You need to install 'curl' for this script to work."
exit 1
fi
PROGNAME=$0
BASE_URL="https://files.rcsb.org/download"... |
b12f4c403ad588267627cf409f976e390348ab961510dd69a908a9403d5b8ca4 | Shell | 2,360 | 52 | #! /bin/sh
# Last successfully run on 12 March 2024 with git repository version v0.29.8-CBIG2022_DiffProc-updates
# Written by Leon Ooi and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# DO NOT CHANGE: This clears old freesurfer variables if they previously exists
if [ -n "$FREES... |
041ef52500b3f64e7724ba2426a5373524cfdab5d045f3a68e5033eaadac26b3 | Shell | 2,363 | 144 | #!/bin/sh
#derived from nrn/bin/mos2nrn2.sh.in
# mos2nrn2 zipfile
NEURONHOME=$N
export NEURONHOME
if test "$MINGW" = "yes" ; then
zipfile="$1"
else
zipfile=`cygpath -u "$1"`
fi
current="`pwd`"
simdir="$TEMP/$$"
askread="yes"
doclean() {
if test "$a" = "y" ; then
echo "removing $simdir"
cd $simdir/..
rm ... |
7a152a5fdd3dc65660ba6ef0b5fa9d565596b6b4c64917a7e7ffe2604f1dd7b0 | Shell | 2,377 | 76 | #!/bin/bash
# A task for running a liftover of a genomic chunk from a BGEN file. This expects the job array file to have the following columns IN THIS ORDER:
# 1. rowidx
# 2. region_idx
# 3. chr_name
# 4. start_pos
# 5. end_pos
# 6. nsites
# 7. infile
# 8. outfile
# 9. source_assembly
# 10. target_assembly
# 11. speci... |
2d6b1b1b017ff741fecd0b7d7862d74779aaea6d04da2159b84e1edd8d2cbfd7 | Shell | 2,381 | 85 | #!/bin/bash
set -e
# rpm and deb distribution built with
#sh bldnrnlinuxdeb.sh
# works for user installation of python2.7, python3.5, python3.6
# and python3.7
INST=/usr/local/nrn
objdir=$HOME/neuron/nrnrpm
cd $objdir
sudo rm -r -f $INST
sudo rm -r -f $objdir/*
bld () {
../nrn/configure --prefix=$INST --with-paran... |
cf8f96bb4f269827b92a22c8ee743c5a3ec41cabac2bbfe056781e7f8fb7153e | Shell | 2,383 | 49 | #!/bin/bash
###################################################################
#created by Davit Bzhalava on 2014-07-08 #
#compares two sequence database with each other #
###################################################################
#nohup /media/StorageOne/HTS/viral... |
d2c4d1d7d1cca2fdbbd6e76a6797ee80cff5ea415c2a4e5e88d942a97fa6f048 | Shell | 2,386 | 71 | #!/bin/bash
##########
#The MIT License (MIT)
#
# Copyright (c) 2015 Aiden Lab
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
#... |
bcd22b6639c73a799fcf605ea74d6aa7cb1fbb5dc88957dfe2b0d77eb6595f33 | Shell | 2,391 | 68 | #!/bin/bash
# Run a test build using docker on local PC, this can be used to debug CI/CD
# gitlab builds without repeated commits. The documentation is uploaded to
# pCloud static web pages for viewing.
# This will create a container called merit and do the build before closing
# and removing the container. The contain... |
e6c454aba36836078a34f26b8d88a60243c81c502ec4ae78240761427f56ff48 | Shell | 2,397 | 60 | #!/bin/bash
#SBATCH -c 12
#SBATCH -t 0-11:59
#SBATCH -p short
#SBATCH --mem-per-cpu=10G
#SBATCH -o /home/ab714/bancpipeline/jobs/banc_wb_cosine_v888v2_alpha05_%j.out
#SBATCH -e /home/ab714/bancpipeline/jobs/banc_wb_cosine_v888v2_alpha05_%j.err
############################################################################... |
93d1a708a81ab9c7fad7773b41a5058cb3246c7507a21bc26cddfb680abd7622 | Shell | 2,398 | 111 | #!/opt/homebrew/bin/bash -i
# get aliases
shopt -s expand_aliases
# Function to display script usage
usage() {
echo "Usage: $0 [OPTIONS]"
echo "Options:"
echo " -h, --help Display this help message"
echo " -w, --wt File path to wild type sequences"
echo " -g, --groups File path to gene groups fil... |
87aff36c0d2fb6302544e2a111d4566c760fa2e55128a312f3d68c16ca7b7c54 | Shell | 2,400 | 98 | #!/bin/bash
#
# Links:
# - https://sectigo.com/faqs/detail/EV-Code-Signing-Certificates-Collection/kA01N000000brbF
# - https://www.reddit.com/r/PowerShell/comments/kj88m2/exporting_code_signing_certificates_from_an_exe/
# - https://blog.codeinside.eu/2017/11/30/signing-with-signtool-dont-forget-the-timestamp/
# - https... |
b8ec463fc0a7d3afd39779bac617d7b7511e2b3a0c343cb1333ad169e1afe365 | Shell | 2,400 | 69 | #/usr/bin/env bash
# Example code for heudiconv and pydeface. This will get your data ready for analyses.
# This code will convert DICOMS to BIDS (PART 1). Will also deface (PART 2) and run MRIQC (PART 3).
# usage: bash prepdata.sh sub ses
# example: bash prepdata.sh 104 01
# Notes:
# 1) containers live under /data/... |
0c96857a630e8ce47b071148aa455270df6bbf45754794001588dbc2724f45b2 | Shell | 2,402 | 92 | #!/bin/bash
helpFunction()
{
echo ""
echo "Usage: $0 -p plinkPrefix -i info_path -o outPath"
echo -e "\t-i variant ID, mandatory"
echo -e "\t-c variant chr, mandatory"
echo -e "\t-s source, to extrat the variant from, mandatory"
echo -e "\t-a association analysis, either SNP or STR, default STR"
e... |
37e1081af1992a859e1ad65ce6c2c6a10bd839ccdbf03bb7208261873f40cc99 | Shell | 2,403 | 81 | #!/bin/bash
Usage() {
echo " "
echo "downsampling of surface"
echo ""
echo "Usage: `basename $0` [options] -s <subject_folder> -h <hemi> -v < # vertices>"
echo ""
echo "Compulsory Arguments "
echo "-s <subject_folder> : Directory output of precon_all "
echo "-h <hemi> : hemisphere d... |
b4d24d68e1b4420feb6ce36c45623b9c6d0d5706dd6ff977198d04c14e260a81 | Shell | 2,403 | 75 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=6
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(((RANDOM % 63000) + 2000))
ss -lpn | grep -q ":$PORT " || break
done
echo $PORT
}
#... |
b271926c4593022fc8946e0783ca2dd0a4c983595b7e42ef730aa3d823666d3b | Shell | 2,406 | 71 | #!/bin/bash
outfile="/gwas_atlas/merit/target_list_grch37.txt"
suhre_file="/gwas_atlas/suhre_pqtl/support_files/suhre_seq_id_to_uniprot.txt"
interval_file="/gwas_atlas/somalogic_interval/support_files/somalogic_interval_metadata.txt"
tempfile=$(mktemp)
# "$tempdb"
mysql -uroot -p -Ddtadb_1_37 <<EOF | awk 'BEGIN{FS="\... |
2d34d6cfdefa60beeee9d2480a865a7a49c70cc34763b6157ef6bf1506b4a7e3 | Shell | 2,409 | 92 | #!/bin/bash
set -ex
# distribution built with
#sh bldnrnmacpkg.sh python3.7 python3.6 python2.7
#10.7 possible if one builds with pythons that are consisent with that.
export MACOSX_DEPLOYMENT_TARGET=10.9
INST=/Applications/NEURON-7.6
if false ; then
cd $HOME/neuron/iv
make clean
rm -r -f $INST
./configure -... |
c31d91dc5cf34c775fc048eeef44e52c9ed5c53b564a275663cbabdb844fcd36 | Shell | 2,416 | 79 | #!/bin/bash
#SBATCH --nodes=1
#SBATCH --partition=cpus
#SBATCH --time=300:00:00
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=32
#SBATCH --exclude=lnx-cm-21008
#SBATCH --job-name=sepoffRM
#SBATCH --error=joblog_error_%j.txt
#SBATCH --output=joblog_output_%j.txt
echo $SLURM_SUBMIT_DIR
echo "Running on `hostname`"
# Data... |
e7216fe2dec19791e5b7e326f0e2401464121f16b7a065138c83a3d615680317 | Shell | 2,421 | 67 | #!/bin/bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); y... |
02df4f9a61d694155f4500a47e18565dff94585093b46810dc6207e34d958423 | Shell | 2,422 | 82 | #!/bin/bash
#SBATCH --nodes=1
#SBATCH --partition=cpus
#SBATCH --time=300:00:00
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=32
#SBATCH --exclude=lnx-cm-21008
#SBATCH --job-name=sepoffRM
#SBATCH --error=joblog_error_%j.txt
#SBATCH --output=joblog_output_%j.txt
echo $SLURM_SUBMIT_DIR
echo "Running on `hostname`"
# Data... |
ace73f7c98834a0a2c37cd4c34869c0cee579c396fecf8a9f6e332d6d4926bec | Shell | 2,427 | 79 | #!/usr/bin/env sh
set -eu
# Set locale for consistent sort output
export LC_ALL=en_US.UTF-8
# escape `*` with `\*` and then prepend each line with `* `
to_markdown_list() {
sed -e 's/[*]/\\\\*/g' -e 's/^/* /'
}
git_log() {
# exclude build, chore, ci, docs, and test of all scopes.
# always include deps scope an... |
dd9a2e93af8b048904fd245048775db644ca073675ef95b1731116e464fbe5c6 | Shell | 2,429 | 78 | #!/usr/bin/env bash
##########################################################################################################################
## CCS SCRIPT TO generagte (group mean BOLD file.
##
## This script can be run on its own, by filling in the appropriate parameters
## Alternatively this script gets called fro... |
b95a8cfc9244d804acefc30e8792d1345d9e79ea0ad3e1e167f15593349da72e | Shell | 2,430 | 82 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=6
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $P... |
7bd5692e0a8af449324c8a8176c026584f7f051503ef2b7800a677d023f3cf61 | Shell | 2,433 | 75 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=7
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $PO... |
a4ed71fdcc2ddfafdd0ffd3f71c7a334bd1266d54a0c0e10f0fc20bc92d1a7f4 | Shell | 2,433 | 87 | #!/usr/bin/env bash
umask u+rw,g+rw # give group read/write permissions to all new files
set -e # stop immediately on error
# when input arguments are provided, use these rather than the instruction file
[[ $# -gt 0 ]] && siteList="$*" || siteList=""
# ignore negative connections?
flgIgnoreNeg=0
# --------------... |
786641c2fccd51d73dd2b458d3aaebdcccf0527447241b910a2da0e84ad5b893 | Shell | 2,437 | 67 | #!/bin/sh
#####
# This script submits job to the schduler to run the specified type of reliability interpretation.
# These scripts are for the HCP dataset.
#
# Input:
# -vers:
# Indicates the version of the prediction procedure that was run. Can be either "full" or "random"
#
# -method:
# Indicate... |
e61c0dff12e510573b87ae26c258df94e3fb235a94c2549c0817165b52f99654 | Shell | 2,438 | 145 | #!/bin/sh
set -ex
# if arg then assume it is destination, eg, c:/marshalnrn64/nrn
if test $# = 1 ; then
N=$1/mingw
else
N='c:/nrn/mingw'
rm -r -f $N
fi
#basic environment
mkdir -p $N/usr/bin
mkdir -p $N/etc
mkdir -p $N/tmp
mkdir -p $N/usr/share/terminfo/63
cp /usr/share/terminfo/63/* $N/usr/share/terminfo/63
c... |
31d302b9365e9e795ccea264b630f2de0543dc4987233753208abe5f8d86baf8 | Shell | 2,444 | 51 | #!/bin/bash
# this function computes the PFM
#
# Written by Jianzhong Chen and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# set cluster; change it to cluster="none" if you don't have a cluster
cluster=CBIG_cluster
###############################################################... |
360ce971c812d3a9d2d46ea7c1688b9d6918e6ee2264ad6e89bbf49d504583cf | Shell | 2,446 | 72 | #!/bin/sh
#####
# This wrapper script submits job to the schduler to run KRR in the HCP dataset.
# This runs the reliability procedure (2 fold cross validation).
#
# Input:
# -seed:
# An integer of the the random seed used to split the folds
#
# -min:
# An integer indicating which FC to run regression f... |
bf00afc1d3603fecef5f425ec0c0c3870fe4e2ff4b5cba9900fa50c89f4da742 | Shell | 2,447 | 43 | set -e
cd /data/SFIMJGC_Introspec/pdn/PrcsData
# Create New Folder where we will generate new grid
if [ ! -d ALL_SCANS ]; then mkdir ALL_SCANS; fi
# Enter target folder
cd ALL_SCANS
# Create the averate across all scans that enter our analysis (471 scans)
3dMean -overwrite -prefix all_mean.nii.gz `ls ../sub-??... |
e0138e3bb27e3e4bef3fffbeb9bc645eddc7cd60745f084db470ccff315dc93f | Shell | 2,448 | 51 | #!/bin/bash
# Output file for HTCondor submit
submit_file="submit_SHAP-IQ_AutoGluon_SHIP_final.submit"
# Clear the existing submit file if it exists
> $submit_file
# Define the number of cores (CPUs)
num_cores=1
# Write the environment settings to the submit file
echo "# The environment" >> $submit_file
echo "unive... |
c6030114a91c48fb0f6debf5ff7d367e59d5ddef5f3c832cf97817644b12dd29 | Shell | 2,449 | 73 | #!/bin/sh
#####
# This wrapper script submits job to the schduler to run KRR in the ABCD dataset.
# This runs the prediction procedure (10 site choose 3 cross validation).
#
# Input:
# -min:
# An integer indicating which FC to run regression for.
#
# -vers:
# The manner in which FC was calculated (See FC... |
f26b0ecba056db40568ed17d644ec7572982369f91a8dd419c9fca66c8e892c0 | Shell | 2,450 | 79 | #!/usr/bin/env bash
#
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by... |
990261b574e7cf231f3f276a01fe454a9ca49fe785fa917b7e3d3ee2e468cdf6 | Shell | 2,452 | 82 | #!/bin/sh
echo "Cora"
echo "===="
echo "GCN"
python gcn.py --dataset=Cora
python gcn.py --dataset=Cora --random_splits
echo "GAT"
python gat.py --dataset=Cora
python gat.py --dataset=Cora --random_splits
echo "Cheby"
python cheb.py --dataset=Cora --num_hops=3
python cheb.py --dataset=Cora --num_hops=3 --random_spli... |
bc32326da5d742df0727841a3deec3c5ecf23bc3d361824def129b6c83b9bad5 | Shell | 2,454 | 74 | #!/bin/sh
#####
# This wrapper script submits job to the schduler to run KRR in the HCP dataset.
# This runs the prediction procedure (10 fold cross validation).
#
# Input:
# -seed:
# An integer of the the random seed used to split the folds
#
# -min:
# An integer indicating which FC to run regression f... |
8d9fd918d49c5b999d29d3b10021178aa42e5766b17f2c7edfc6da747afa2a65 | Shell | 2,455 | 55 | #!/bin/bash
##########
#The MIT License (MIT)
#
# Copyright (c) 2015 Aiden Lab
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
#... |
af919b547a7d7ce3233424ba6bc4b6940b2964d60891d5dfc38f3b203264da7e | Shell | 2,464 | 65 | #! /bin/bash
#Example Results Directory
#cp /Users/ranump/Desktop/Charlie_test/SPLiT-Seq_demultiplexing/results-UMI
RanHex_barcodes="./RanHex.txt"
Odt_barcodes="./OligoDT.txt"
OUTPUT_DIR="results"
# Read in the RandomHexamer and OligoDT RT primer barcode sequences
declare -a RanHex_BARCODES=( $(cut -b 1- $RanHex_ba... |
fe88af7fb89a8b611eb0eacc4749fe198e1c36ccd4b3d9287eec056a1ae9a4d8 | Shell | 2,464 | 51 | #!/bin/bash
# Output file for HTCondor submit
submit_file="submit_run_SHAP-IQ_AutoGluon_KI.submit"
# Clear the existing submit file if it exists
> $submit_file
# Define the number of cores (CPUs)
num_cores=1
# Write the environment settings to the submit file
echo "# The environment" >> $submit_file
echo "universe ... |
2d6b12aacb5fb24309dab3d5f9d7588f86f100e425c1d0d713dd900731d2c395 | Shell | 2,465 | 65 | #!/bin/bash
### fix bet with manual mask
### update template spaew rgistrations
### after running rerun preocn_all with precon_2
### only for use with templates defined in $PCP_PATH/standards
usage() {
cat <<EOF
Usage: $(basename "$0") <precon_dir> <updated_brain_mask> <animal> <reg_method>
precon_dir ... |
bbef6c664027697758165a9dc6cc98f52d89d7b099fe38edb4e9c114d562f91e | Shell | 2,467 | 49 | #!/bin/bash
# This script aligns the species consensus for each gene with the reference genome. Using the coverage information, it selects the best coverage consensus (either genomes or transcriptomes) and, if necessary, replaces genomic consensus by transcriptomic consensus.
# The script makes a nucleotide alignment ... |
4cd00f537688e08ef94f585a6ffbdf6823fdd6113f58ee09eb9df64f45c4f21b | Shell | 2,469 | 24 | #!/usr/bin/env bash
# for untargeted attacks, use the following commands
python tangent_attack_hemisphere/attack.py --gpu 0 --norm l2 --dataset CIFAR-10 --attack_defense --defense_model adv_train --arch resnet-50
python tangent_attack_hemisphere/attack.py --gpu 0 --norm l2 --dataset CIFAR-10 --attack_defense --defen... |
9a9a47dd5db745f04c2088d9c97f7da90f725bb3e0366b6bf47340a20cd6c194 | Shell | 2,469 | 65 | #!/bin/bash
##########################################################
# CREATED BY DAVIT BZHALAVA on 2014/10/26 #
##########################################################
export path_htsa_dir=$1
export project_work_dir=$2
if [ -d $project_work_dir/PB_tblastx ];
then
rm -r $proj... |
427a2546cd1ab87893badaf26c122f28e4f7ab83932473c9d83566486bc4b8d4 | Shell | 2,470 | 75 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=6
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $POR... |
c5f8236e8feb2e7f98b8878532de880a68a1d460e95da612c8313c64b23b503f | Shell | 2,471 | 77 | #!/usr/bin/env bash
##########################################################################################################################
## CCS SCRIPT TO generagte mask files for second-level group analysis
##
## This script can be run on its own, by filling in the appropriate parameters
## Alternatively this sc... |
740531307266d8c78b699a9aa6b3113bf73228842acefc1b12b49d9706ac3d27 | Shell | 2,473 | 70 | #!/bin/sh
# This function uses linear ridge regression to predict fluid intelligence score (PMAT24_A_CR) in the HCP dataset.
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
########################
# setup for CIRC cluster
########################
curr_... |
5f1fa692d2634c7ad9af590707f133cd5cd9188d850ac23e3f88c28ba55af49d | Shell | 2,475 | 68 | #!/usr/bin/env bash
##########################################################################################################################
## CCS SCRIPT TO PREPROCESS THE DTI SCAN (INTEGRATE AFNI AND FSL)
##
## R-fMRI master: Xi-Nian Zuo. Aug. 13, 2011.
##
## Last Modified: Dec., 20, 2014.
## Email: zuoxn@psych.ac... |
5f89d15ace812989d9e96818970d4f1035d08b886fa8a5b10f04dcfea24a580a | Shell | 2,476 | 82 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=5
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $P... |
9f738b4f0bca5202ea0213bb8a23c7bc688328b601c0473a0496d3182d862a74 | Shell | 2,476 | 82 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=4
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $P... |
85fcd92db685aabd08261ccfd0c659edad9fab3a1cecf493ac1a2a94e3fc3535 | Shell | 2,480 | 64 | #!/bin/bash
#SBATCH --account=girirajan # TODO: set account name
#SBATCH --partition=girirajan # TODO: set slurm partition
#SBATCH --job-name=ANNOVAR
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=8
#SBATCH --time=400:0:0
#SBATCH --mem-per-cpu=20G
#SBATCH --chdir /data7/iPSC_corrine/STR/src
#SBATCH -o logs/4_ANNOVAR.log
#S... |
f7eb03a44714649940b8b7aa4fb5f86c3d1a9d4aa19d1c66c43e3e4c7b08ebc2 | Shell | 2,482 | 74 | #!/usr/bin/env bash
# Publish model catalog JSON files as GitHub Release assets.
#
# Usage:
# bash dev/publish_model_catalog.sh [--repo OWNER/REPO] [--tag TAG] [--catalog-dir DIR]
#
# Defaults:
# --repo mlflow/mlflow
# --tag model-catalog/latest
# --catalog-dir mlflow/utils/model_catalog
#
# The sc... |
15c2a094a3bc021508f09b4cd7f0121b4bd45f542f9c7f7a395610cf17699323 | Shell | 2,483 | 82 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=7
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $... |
13a1c4ea2a58dcc12552d9b24d4af1afe2004611e887b33eb93a460efa42d09f | Shell | 2,491 | 81 | #!/bin/bash
#SBATCH --nodes=1
#SBATCH --partition=gpus
#SBATCH --time=100:00:00
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=32
#SBATCH --job-name=sepoffMM
#SBATCH --error=joblog_error_%j.txt
#SBATCH --output=joblog_output_%j.txt
echo $SLURM_SUBMIT_DIR
echo "Running on `hostname`"
# data source
path_biotools="/gpfs/sc... |
c0ffae9f76b01177766a586d4ea78aa67d2ec3f181c8e50f77e21a7f96b6b69c | Shell | 2,493 | 82 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(1 0.01 0.1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=7
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $... |
e4fd2561b42745bb90d58311c051a1bf36b7af6ab0508275fe0fd41fd2687b72 | Shell | 2,493 | 62 | #!/bin/bash
##########################################################
# CREATED BY DAVIT BZHALAVA on 2013/11/16 #
#This program selects unknown sequences (by nt blasting) #
#and blastes agains protein database by blastx algorithm #
#####################################################... |
b49d9997395a91352f45f279cf0d846395d20de7c687afa32e2c95a5b685935d | Shell | 2,499 | 82 | #!/bin/bash
# Define the split_ratios array to use 0.01 0.1
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=5
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
... |
bd8a669c4440b2c33235423ba7a503aa4fcebcf02b4ec406a04b4d4c86ff7159 | Shell | 2,499 | 82 | #!/bin/bash
# Define the split_ratios array to use 0.01 0.1
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=4
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
... |
3ee4d1a6a87d60578c3859b83e1450acaf9ce30340a11a8d7a01110654375fd2 | Shell | 2,500 | 73 | #!/bin/sh
#####
# This wrapper script submits job to the schduler to run KRR in the ABCD dataset.
# This runs the reliability procedure (10 site choose 5 cross validation).
#
# Input:
# -min:
# An integer indicating which FC to run regression for.
#
# -vers:
# The manner in which FC was calculated (See F... |
0925058c95f28303fd64d2c2373b460600cd081893b072175b7c4f299eb5f152 | Shell | 2,506 | 95 | #!/bin/bash -e
# Copyright (c) Meta Platforms, Inc. and affiliates.
#
# This source code is licensed under the BSD-style license found in the
# LICENSE file in the root directory of this source tree.
# run this script from the project root using `./scripts/build_docs.sh`
usage() {
echo "Usage: $0 [-b]"
echo ""
... |
21650cab3a33720f166398add84f6e2156691b68d0c8de27aae77ec7e9e5210d | Shell | 2,508 | 51 | #!/bin/bash
# Output file for HTCondor submit
submit_file="submit_run_SHAP-IQ_AutoGluon_VETSA.submit"
# Clear the existing submit file if it exists
> $submit_file
# Define the number of cores (CPUs)
num_cores=1
# Write the environment settings to the submit file
echo "# The environment" >> $submit_file
echo "univer... |
4ad4d24fcb85829fab8e11cc1119cb936d07a280c9ab1a44def51f3f1b192f58 | Shell | 2,508 | 51 | #!/bin/bash
# Output file for HTCondor submit
submit_file="submit_run_SHAP-IQ_AutoGluon_Pitts.submit"
# Clear the existing submit file if it exists
> $submit_file
# Define the number of cores (CPUs)
num_cores=1
# Write the environment settings to the submit file
echo "# The environment" >> $submit_file
echo "univer... |
00292331652c22b902195cd6155010ccd56768820211d4c280fb93adbfe18d08 | Shell | 2,510 | 51 | #!/bin/bash
# Output file for HTCondor submit
submit_file="submit_run_SHAP-IQ_AutoGluon_Liege.submit"
# Clear the existing submit file if it exists
> $submit_file
# Define the number of cores (CPUs)
num_cores=1
# Write the environment settings to the submit file
echo "# The environment" >> $submit_file
echo "univer... |
00db2d5ba7493cda963516925f84ad55122886b2f6359eeb2af71bef8f60497a | Shell | 2,510 | 63 | #!/bin/bash
# define project directory and working directory
pd=/your/project/directory/
input_dir=$pd/data/validations/ATAC_seq_FASTQ_trimmed
output_dir=$pd/data/validations/ATAC_seq_BAM
mkdir -p $output_dir
# map human samples
for i in `ls $input_dir/human*r1.trimmed.fastq.gz| xargs -n1 basename`;
do
sample... |
674ad02620f25fc48cb36ad3f8a98422aadb1e82a382f7f5958dc9b15a092c28 | Shell | 2,511 | 71 | #!/bin/sh
# This function replicate the kernel ridge regression results in the GSP dataset shown in Li et al., 2019
# Only two behavioral measures are included: Shipley_Vocab_Raw and Matrix_WAIS
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
##########... |
cb269788ba92f9246e441dddcc1e820eca83e6271e18ef5b537738df59ad75fd | Shell | 2,513 | 65 | #!/bin/bash
## Example bash script to filter ChIP-seq bams by removing multi-mapped reads, blacklisted regions and duplicates. To run this script, do: qsub -t 1-n submit_filterChIP-seq.sh CONFIG IDS BAM_DIR
## CONFIG is the path to the file scripts/config.sh which contains environment variables set to commonly used pa... |
feeea7015c1d0623a5c3ea9d33e08daef06dc973a76dd6788cfcfc5c03d665d8 | Shell | 2,515 | 69 | #!/bin/bash
#SBATCH -c 4
#SBATCH -t 0-08:00 # 8h cap on priority (was 18h on medium)
#SBATCH -p priority
#SBATCH --mem=220G # bumped from 150G: job 40119383 hit
# 153GB peak then OOM-killed in
... |
0dd9adc4ceebec5686a8799d5a01c211e4a52da9980224835381630d47b11246 | Shell | 2,525 | 82 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=5
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $... |
fcae3a19d8ba522b17742737718a19e0752ffd5176ef60f502a1cbdcf9593388 | Shell | 2,525 | 82 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(0.01 0.1 1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=4
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $... |
477d0abd7dfc67098b5b53662bcc1d19407471a97cceaa434bc5c0981c788ba7 | Shell | 2,527 | 70 | #!/bin/sh
# This function uses kernel ridge regression to predict fluid intelligence score (PMAT24_A_CR) in the HCP dataset.
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
########################
# setup for CIRC cluster
########################
curr_... |
61a32c5276ecf87612a5672c1af6611d4cdcd7f90967f4600f1ba9b1c2d5fcce | Shell | 2,529 | 62 | #!/bin/bash
##########################################################
# CREATED BY DAVIT BZHALAVA on 2013/11/16 #
#This program selects unknown sequences (by nt blasting) #
#and blastes agains protein database by blastx algorithm #
#####################################################... |
7868e3f0ce5b14620ce0ccb6a0a9607e08bcb55a3be261ac1a1c844e4ed54dc8 | Shell | 2,530 | 67 | #!/bin/bash
tools_dir=$(realpath $(dirname $(command -v $0)))
# if first argument is 1 set the COMPILE flag
if [[ $1 == 1 ]]; then
COMPILE=1
else
COMPILE=0
fi
# if COMPILE=0
if [[ $COMPILE == 0 ]]; then
# download NORDIC from github release
[[ -d $tools_dir/pkg/nordic ]] && rm -rf $tools_dir/pkg/nord... |
2abc1c732ead57b0364520b1b6f6a5ecf1c0d3f9a8d11646403ff8fb625a8e1c | Shell | 2,535 | 82 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(1 0.01 0.1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=4
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $... |
ed90924c489807cfecad84f280b5128b57e04914cb6c757d8ea11b3727e7693c | Shell | 2,535 | 82 | #!/bin/bash
# Define the split_ratios array to use
split_ratios=(1 0.01 0.1)
sampling_methods=("random")
export CUDA_VISIBLE_DEVICES=5
export OMP_NUM_THREADS=1
generate_random_port() {
while :; do
PORT=$(( ( RANDOM % 63000 ) + 2000 ))
ss -lpn | grep -q ":$PORT " || break
done
echo $... |
0d5e487b3935102aef4c2d442e163488447e24a40e9aa55e74b6b146915a05c1 | Shell | 2,541 | 75 | #!/bin/sh
#####
# This wrapper script submits job to the schduler to run KRR in the HCP dataset.
# This runs the prediction procedure (10 fold cross validation).
# Runs the predictions for subcortical connections specifically.
#
# Input:
# -seed:
# An integer of the the random seed used to split the folds
#
# ... |
9f3f27272e8eb42caf87e4d9e13b1fc71ccb40be0335a3958d8aacb6ae6fc36f | Shell | 2,542 | 97 | #!/bin/bash
unameOut="$(uname -s)"
case "${unameOut}" in
Linux*) machine=Linux; folder=Other;;
Darwin*) machine=Mac; folder=macOS;;
CYGWIN*) machine=Windows; folder=Windows;;
MINGW*) machine=Windows; folder=Windows;;
*) machine="UNKNOWN"
esac
if [ "${machine}" == "UNKNOWN" ... |
08ffe6aad76508e7b0f98e78ffd8fa6005009b44bb4eb887b8669c045e803a82 | Shell | 2,548 | 41 | # ===========================================================
# 2d loss contours for VGG-9
# ===========================================================
# ------------------------------------------------------------
# SGD
#------------------------------------------------------------
mpirun -n 4 python plot_surface.py ... |
576cc8b8ab8d9533f47eaf70053aec8d7ea90dc5e3cd0812770d300b8e8aeff2 | Shell | 2,549 | 66 | #!/bin/sh
#####
# This script submits job to the schduler to run the specified type of reliability interpretation.
# These scripts are for the ABCD dataset.
#
# Input:
# -vers:
# Indicates the version of the prediction procedure that was run. Can be either "full" or "random"
#
# -method:
# Indicat... |
076a7396d49f982c092d7853e152b456457675fd49a93d01417ff63f29e960f6 | Shell | 2,550 | 74 | #!/bin/sh
#####
# This wrapper script submits job to the schduler to run KRR in the ABCD dataset.
# This runs the prediction procedure (10 site choose 3 cross validation).
# This script specificall runs the procedure for subcortical connections (419x19 FC prediction)
#
# Input:
# -min:
# An integer indicating ... |
3728a9e8f48a7aacff9628d439b99acfe72052062015ecc399115e0b37c29733 | Shell | 2,550 | 63 | #!/bin/bash
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); yo... |
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