sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
da5856858390d65ba04166e5e2b3d153dc7eb2c1f65dc7712645621ecc0c73f5 | Shell | 8,223 | 249 | #!/bin/bash
#
#This is a shell program to generate a script to trace brightfield images
#
# Last change: 2016-08-20
#
function write_trace_spec_commands {
vaa3d=$1
outputScript=$2
img_name=$3
trace_img_name=$4
echo "chmod -R 777 $trace_img_name*;" >> $outputScript;
echo "$vaa3d -x mapping3D_swc -f mappin... |
20358fc2e3f022bfda21ef70b67dac9e40d8ee4ec3b1f3c152a005a77aab8d41 | Shell | 8,225 | 117 | #!/bin/bash
#########################################################################################
# BWA_NR
# Copyright (c) 22/08/2013 Davit Bzhalava
##########################################################################################
#
# Alligns row anassembled pairend sequences to quey fasta and estima... |
a886bb6abf51e8349207804ebda8d5459ee5b2bca8ebbb15df00c20c9a7283a9 | Shell | 8,279 | 263 | #!/usr/bin/env bash
################################################################################
#
# WARNING: THIS SCRIPT IS UNSUPPORTED!
# USE AT YOUR OWN RISK
#
# DESCRIPTION:
#
# This script will create a simple Gencode data source for all the variants
# in a given VCF file.
# You will have to index the fasta ... |
c4b336c25a098590e745c51e61b332ebc27ac105ec561855ef16e2d234fbc904 | Shell | 8,280 | 251 | #############################
##########new_set############
#############################
NAMES=./new_dimers_names.txt
NATIVEDIR=../data/new_dimers/PDB
DOCKQ=/proj/berzelius-2021-29/users/x_patbr/DockQ/DockQ.py
#model_1
#reycle 10
#for run in {1..5}
#do
# MODELDIR='/proj/berzelius-2021-29/users/x_patbr/results/a... |
bb1cad7610642b5a7c2201fd1f67c9bbc0ce58d243b4b3dcbeec1c5d924f6a43 | Shell | 8,315 | 272 | #!/usr/bin/env bash
git --version > /dev/null
if [ $? -ne 0 ]
then
echo "Could not find git executable"
exit 1
fi
rg --version > /dev/null
if [ $? -ne 0 ]
then
echo "Could not find rg (ripgrep) executable"
exit 1
fi
top_level=$(git rev-parse --show-toplevel)
cd $top_level
ret=0
opts="--perl-regexp --ignore... |
032eabf83f5abf5c1138d66f454a85a162ba65343b545d7b44f2397b5b9db010 | Shell | 8,378 | 236 | #!/bin/bash
#$ -cwd
# error = Merged with joblog
#$ -o job_logs/job_log.$JOB_ID.$TASK_ID
#$ -j y
## Edit the line below as needed:
#$ -l h_rt=24:00:00,h_data=16G
## Modify the parallel environment
## and the number of cores as needed:
#$ -pe shared 1
#$ -t 1-N # This will be replaced with actual number of files
# Get... |
451e9a9f684df46925856db9eb0f3239492c11e5d1a75200d93efa0f135d53a4 | Shell | 8,386 | 244 | #!/bin/sh
#####
# Example:
# $CBIG_CODE_DIR/stable_projects/preprocessing/CBIG_diffusion_processing2022/CBIG_diffusionQC.sh \
# --subj $subject --subjDIR $projdir/$subject/T1w/Diffusion \
# --subjImg data.nii.gz --outdir $base_outdir/S1200/individuals/$subject \
# --bval_file bvals --bvec_file ... |
215a60f7fa51a1cf1a73b9289bbf67a581b46a850eea9e17d2c9050e5940b19b | Shell | 8,396 | 229 | #!/bin/sh
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
data_csv=$CBIG_LiGSR_REP_GSP_DIR/scripts/subjects/GSP_extended_140630.csv
ystem=""
root_dir="$CBIG_CODE_DIR/stable_projects/preprocessing/Li2019_GSR/VarianceComponentModel/scripts/"
main() {
##... |
4f2ec5e5edbd83813b17767f91454f54aeee2ed6020789806cc33c1ad6deb414 | Shell | 8,489 | 229 | #!/bin/bash
# Wrapper script for Step 5: PNF consistency/inconsistency analysis.
#
# Computes predictive network features (PNF) for two models:
# Model 1: FC_Y0 -> CogY0
# Model 2: FC_Delta -> CogDelta
# Then compares sign consistency across models.
# Network matrix plots can be generated locally without cluster su... |
2f6f5267792e43f99de1702693f09df09bec6ac88d94fd351339fee2974683af | Shell | 8,517 | 326 |
STUDYNAME=$1
ROOTPATH=$2
HASEROOT=$3
OUT=${ROOTPATH}/OUTPUT/${STUDYNAME}/
rm -rf ${OUT}
mkdir -p ${OUT}
mkdir -p ${OUT}/regression/
mkdir -p ${OUT}/PD_with_b4/
mkdir -p ${OUT}/PD_without_b4/
mkdir -p ${OUT}/PD_without_b4_cluster/
mkdir -p ${OUT}/PD_with_b4_cluster/
mkdir -p ${OUT}/encode/
mkdir -p ${OUT}/encode/... |
b384dea80c61b8ffea13023de433c3d89f9d01640fd91b8d2c5e6a1fdc8ed178 | Shell | 8,611 | 108 | #!/bin/bash
#########################################################################################
# BWA_NR
# Copyright (c) 22/08/2013 Davit Bzhalava
##########################################################################################
#
# Alligns row anassembled pairend sequences to quey fasta and estima... |
e7550795f8ae0ec0a2ace6b5c82e1d9ea1e53ec9f8a2c49df74a1da3b4142c3c | Shell | 8,620 | 63 | #!/usr/bin/env bash
#See below to set yarn and executor memory options right
#http://stackoverflow.com/questions/38331502/spark-on-yarn-resource-manager-relation-between-yarn-containers-and-spark-execu
#example parameters (data must be in /data/input/example in compressed fastq format and /data/output directory must e... |
abb81cf216aea7b66f37fd321a019421be5b4bd0c1760e0b075fbd21f7a1e749 | Shell | 8,639 | 175 | #!/bin/bash
#
# dl+direct-nofs -- surface reconstruction with no FreeSurfer calls at all.
#
# fast_surface_reconstruction.sh runs five FreeSurfer binaries, but only to
# build FreeSurfer's *own* pial surface via mris_make_surfaces. The white
# surface it produces depends on none of them: preparedata.py and
# dl_wm_surf... |
9334a44c5badd1112bae8353651dc0968f3474cce845eba6bfe4544714c11962 | Shell | 8,640 | 244 | #!/bin/sh
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
data_csv=$CBIG_LiGSR_REP_GSP_DIR/scripts/subjects/GSP_extended_140630.csv
outstem=""
num_test_folds=20
num_inner_folds=20
with_bias=0
root_dir="$CBIG_CODE_DIR/stable_projects/preprocessing/Li2... |
874417516aa435d60490b1d32dfa94a416f1225c35f29a3c89f60ee8a0c23e51 | Shell | 8,648 | 247 | #!/bin/bash
#
# This script runs through the code in each of the python examples.
# The purpose is just as an integration test, not to actually train models in any meaningful way.
# For that reason, most of these set epochs = 1 and --dry-run.
#
# Optionally specify a comma separated list of examples to run. Can be run ... |
3067b6bfc049f3b4dcd5eeffff4a0ef68a881b7d95a06d0c8499a2bd06a88b01 | Shell | 8,699 | 179 | #!/bin/bash
##
## 09 May 2023
## Izaskun Mallona
##
## Retrieves RNA-seqs, with Ambra Villani
WD=~/avillani_microglia
SRA="/home/imallona/soft/sra/sratoolkit.3.0.1-ubuntu64/bin/"
mkdir -p $WD/data
cd $_
# Abud EM, Ramirez RN, Martinez ES, Healy LM et al.
# iPSC-Derived Human Microglia-like Cells to Study Neurologic... |
ad7df33360033e22b18704be7c21a165469f7642de57c2345499b198be7ce460 | Shell | 8,738 | 256 | #!/bin/sh
set -e
# sh nrndiagnose.sh [python]
# Diagnostic tests to verify launch functionality of a NEURON
# installation. Problems that occur are generally traceable to
# environment issues that can be fixed with proper
# PATH, PYTHONPATH, PYTHONHOME, and/or NRN_PYLIB
# filled in by configure
prefix="/home/hegan/D... |
e71ff9f4e5efe9ee74d1bbe2c25ad541f0122dafe8a001b7a402f77bd70129c6 | Shell | 8,748 | 177 | #When a sparse GRM is used to fit the null model (--useSparseGRMtoFitNULL=TRUE), variance ratios are estiamted using markers randomly selected from (--plinkFile). Categorical variance ratios are estimated (--isCateVarianceRatio=TRUE)
Rscript step1_fitNULLGLMM.R \
--plinkFile=./input/nfam_100_nindep_0_step1_inc... |
ccc46382dca08a7413aa6e32669c9bb716107d513e833c51e78bb1a5b35cdb60 | Shell | 8,947 | 249 | #!/bin/bash
# ants_to_fsl_warp.sh
# Convert an ANTs warp + affine pair into FSL applywarp format and apply.
#
# Pipeline:
# 1. Split the 5D ITK warp into x/y/z components (ImageMath).
# 2. Sign-flip components based on reference orientation:
# NEUROLOGICAL -> Y flip only
# RADIOLOGICAL -> X and Y fl... |
0c70b4200f7b0421af55e785d6188c04b21ac163db16affebe957edea317c5aa | Shell | 8,952 | 199 | #!/bin/bash
usage()
{
base=$(basename "$0")
echo "usage: $base subject age [options]
This script runs the dHCP surface pipeline.
Arguments:
subject Subject ID
Options:
-d / -data-dir <directory> The directory used to run the script and output the files.
-t / -threads <number> ... |
972f13d90e1bacaa0631f162f03d9327884e52bbc662401efc1c0dbfc60729f0 | Shell | 8,992 | 343 | #!/bin/sh
# install from the build directories to the mswin destination
# uses the classical positions of files
if test "$top_srcdir" = "" ; then
echo "instal.sh should be executed at top level with make mswin"
else
S=`cygpath -u -a $top_srcdir | sed 's/\/$//'`
export S
fi
if test "$top_builddir" = "" ; then
echo ... |
18efe3307d0f43b0968f4e4eb55912326550e59905b9e0b23dedc6d351bf2278 | Shell | 9,051 | 255 | #!/bin/sh
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
data_csv=$CBIG_LiGSR_REP_GSP_DIR/scripts/subjects/GSP_extended_140630.csv
num_test_folds=20
num_inner_folds=20
evaluations=15
tree=3
root_dir="$CBIG_CODE_DIR/stable_projects/preprocessing/Li201... |
d14baec505e61c618d9df131afeccdc337e9b14e83a60b162ab2f4f173e1cd85 | Shell | 9,116 | 270 | #!/bin/bash
# Ensure the script stops on first error
set -e
# This script is designed to synchronize local and remote directories, excluding certain files and folders
############################## START EDITABLE AREA ##############################
# Source password script as passwordless login is currently not ena... |
3f2eb7a2f144ca309ca324b142701bc4174af4a76cc363df4d13e22bae40f88b | Shell | 9,239 | 293 | #!/usr/bin/env bash
umask u+rw,g+rw # give group read/write permissions to all new files
set -e # stop immediately on error
# TODO: when not all runs are included, be clever in the $c counter and the run specific merge
# retrieve input argument to find correct instructions
instructDir="$1"
# ------------------- #... |
3b9fb8427d7bdf3563027327f0e864aa01561363560c62117b0caaf7daf27b14 | Shell | 9,298 | 229 | #!/usr/bin/env bash
# =============================================================================
# Static Site Build Script
#
# This script performs the following tasks:
# 1. Checks that NodeJS (>=18.0) is installed; if not, it prints instructions
# for installing via nvm.
# 2. Changes directory into the do... |
ba0d1555e059adce5e9a06ba53e992c708cc3fa331a7686b98e3268b6c18388f | Shell | 9,299 | 141 | #!/bin/bash
exe_name=$0
exe_dir=$3 # need to provide tool path because we are not using the default shell script
export MCRROOT=$4 # Matlab 2022a runtime
export PATH=$PATH:$5:$6 # ANT and nifty_reg install/bin folders
export MATLAB_SHELL="/bin/bash" # change to use bash instea... |
544f5a8ec6521f146034b2b52e0933a96ee3fff581d40595348ac30818f5c1f2 | Shell | 9,312 | 229 | #!/bin/bash
# Script to analyze all generated molecule files and compute scores
# Run from the edm directory
set -e # Exit on any error
echo "=== Analyzing All Generated Molecules ==="
# Configuration
DATASET_PATH="dataset/pdbbind/5zcu"
PROTEIN_PDB="${DATASET_PATH}/protein.pdb"
OUTPUT_BASE_DIR="raw_mols"
echo "Us... |
b1c580aefd908b79f24892d16f5434a3450dd78ef8c9d3f82da7b7bc9c5d2920 | Shell | 9,367 | 232 | #!/usr/bin/env bash
################################################################################
set -e
################################################################################
SCRIPTDIR="$( cd -P "$( dirname "$0" )" && pwd )"
SCRIPTNAME=$( echo $0 | sed 's#.*/##g' )
###################################... |
7386797b5570a2d4a4dc531f302eb9c780c3036e015e6bc16c474ac48fb24d38 | Shell | 9,397 | 273 | #!/bin/bash
# install_python_deps.sh
# Installation script for ConnectomeInfluenceCalculator Python dependencies
# Part of the influencer R package - installs into r-reticulate environment
set -e
# Colors for output
RED='\033[0;31m'
GREEN='\033[0;32m'
BLUE='\033[0;34m'
YELLOW='\033[1;33m'
NC='\033[0m' # No Color
ech... |
d42ad7fec51991c3e8b96e64b7ef54cec5db737d8fbf3a71e929ab6c9ecaf53f | Shell | 9,415 | 222 | #!/bin/bash
export project_work_dir=$1
export PB_dir=$2
export NR_dir=$3
cd $PB_dir
echo 'nt_final<-read.csv("nt_final.csv")
write.table(nt_final[,c("Queryid","Division")],"tmp_nt_final.txt",row.names=F,col.names=F,quote=FALSE, sep="\t")
' > tmp_nt_final.R
R CMD BATCH --no-save tmp_nt_final.R
awk -F"\t" '{if($2 == ... |
43249bc6e7242206aa8bbb6ec45fd76a0c4e7b766cac79c649b609fb533c79c8 | Shell | 9,446 | 258 | #!/bin/bash
#
#This is a shell program to batch reconstruct images using 21 different methods.
#
function write_vaa3d_job_config {
outputScript=$1;
tracingMethod=$2;
echo "## Check which queue you may use" >> $outputScript;
# echo "#PBS -q dque" >> $outputScript;
echo "#PBS -q regular" >> $outputScript;
... |
752ec7ada8942e278c5f2268ea38ee69e166dad69073a37f22e83e8ea0674cbe | Shell | 9,470 | 167 |
#!/bin/bash
#PBS -l walltime=12:00:00
#PBS -N L3stats-trend
#PBS -q normal
#PBS -m ae
#PBS -M matt.mattoni@temple.edu
#PBS -l nodes=1:ppn=28
# load modules and go to workdir
# module load fsl/6.0.2
# source $FSLDIR/etc/fslconf/fsl.sh
cd $PBS_O_WORKDIR
umask 0000
# ensure paths are correct
shareddir=/gpfs/scratch/tug... |
6582f96e3dc450aafd86547ce565e0d763c3b2c2252fe26a18327b316c27f4c7 | Shell | 9,490 | 236 | #!/bin/bash
source "${PCP_PATH}/bin/precon_logging.sh"
Usage() {
echo " "
echo "Usage: `basename $0` [options] -i <T1_image> "
echo ""
echo " Compulsory Arguments "
echo "-i <T1.nii.gz> :Compulsory input, Image must include nii or nii.gz file extension "
echo " "
echo "-a <... |
b385bdfe54ea977715d8e02b738d5b8f2004315ef6ef2680034a098ecba4ac77 | Shell | 9,496 | 189 | #!/bin/bash
# Copyright (c) Meta Platforms, Inc. and its affiliates.
# This source code is licensed under the MIT license found in the
# LICENSE file in the root directory of this source tree.
set -ex
function install_92 {
echo "Installing CUDA 9.2 and CuDNN"
# install CUDA 9.2 in the same container
wget... |
955c7cf8e7e6c138f7f580a7301053cfbfd131b7d2fdc7c1e5b71d359252b0e3 | Shell | 9,504 | 249 | #!/bin/bash
#
#This is a shell program to batch reconstruct images using 28 different methods.
#
# Last change: 2015-08-17. by Hanchuan Peng adding the anisotropic filtering.
#
function write_neuron_tracing_command {
outputScript=$1;
METHOD=$2;
vaa3dProgramPath=$3;
inimgfileTracing=$4;
finalfileFolder=$5;
... |
adb8ff758fc38d2e2c64e4a17d53a0dade7b78328d54fa7b3db12865a9aace2a | Shell | 9,633 | 266 | #!/bin/bash
#
#This is a shell program to batch reconstruct images using 21 different methods.
#
function write_vaa3d_job_config {
outputScript=$1;
echo "## Check which queue you may use" >> $outputScript;
# echo "#PBS -q dque" >> $outputScript;
echo "#PBS -q regular" >> $outputScript;
echo "# Allow up to 1... |
dc323e59fd0c259dbbcc3bb2a41cb31dffd58433e7f4bdfc93afc2cd1c2107cd | Shell | 9,658 | 96 | conda activate geomx
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/hkgmh3_74_50/train/ --cell_cutout 20 --preprocess_workers 20 \
--calc_mean_std
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/hkgmh3_74_50/test/ --cell_cutout 20 --preprocess_workers 10
python -m cell... |
e869fbdf3e4a43be012eece16e1f445eefd11e306ee5a8d979207c801619bfb6 | Shell | 9,662 | 316 | #!/bin/bash
set -euo pipefail
usage() {
cat <<'EOF'
Usage:
make_average_surface_native.sh \
--template-ref /path/to/template_subject \
--subject-list /path/to/group.txt \
--out-dir /path/to/output_subject \
--ico 5 \
[--include-ref-stats] \
[--stats]
Description:
Builds an average FreeS... |
fadcf391eac81a74ec9e6c126deb813459571cc5d54de09feb5f7b8381ca8ec0 | Shell | 9,671 | 303 | #!/bin/bash
# ---------------
# Parameter Setting
# ---------------
INITDIR="" # Working directory
DATA_DIR=${INITDIR}/data # Data input
ICAS_DATA="$INITDIR/data/dm.csv" # Data input
LOG_FILE="$INITDIR/ICAS_analysis.log" # Working log
RESULT_DIR="$INITDIR/result/" # Result Output
RLT_PATH="$INITDIR/glmfit_res" #summar... |
2c1597665ef23b025e9eb426e756cc78e4e6924e57c699abc0c128e160791b17 | Shell | 9,676 | 268 | #!/bin/bash
#
#This is a shell program to batch reconstruct images using 21 different methods.
#
function write_vaa3d_job_config {
outputScript=$1;
tracingMethod=$2;
echo "## Check which project you may use" >> $outputScript;
# echo "#PBS -q dque" >> $outputScript;
echo "#PBS -A NRO101" >> $outputScript;
... |
d1dea97c72a11a0cd04840a66cdf1f17d30c495d09d5308636807eb4ced29582 | Shell | 9,680 | 269 | screen -S 2_ChrA1
conda activate ~/introNets/intronets
pop="wel"
pop_sizes="40,44"
chr=mLynRuf2.2_ChrA1
taskset -c 1 python src/introNets/src/models/apply_disc_to_npz.py \
--ifile data/introgression_scans/npz_files/lpa-${pop}.${chr}.npz \
--ofile data/introgression_scans/lpa-${pop}_predictions_withM/${chr}.pred... |
9ada541faa46aca77fa73e5f6856efe36a78fdb63343d38cc41be410c8ff972c | Shell | 9,681 | 96 | conda activate geomx
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/hkgmh3_74_30/train/ --cell_cutout 30 --preprocess_workers 20 \
--calc_mean_std
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/hkgmh3_74_30/test/ --cell_cutout 30 --preprocess_workers 10
python -m cell... |
b699b5fa0ef5bcbf4d4b63f3aacaff6a2091a3cde2ff1a03a2c767f5f135ae3e | Shell | 9,683 | 96 | conda activate geomx
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/hkgmh3_74_20/train/ --cell_cutout 20 --preprocess_workers 20 \
--calc_mean_std
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/hkgmh3_74_20/test/ --cell_cutout 20 --preprocess_workers 10
python -m cell... |
4efb8a946181aa4d4735bf6862c08330a44c0be63c494583672291599b3bafc8 | Shell | 9,783 | 268 | #!/bin/bash
#
#This is a shell program to batch reconstruct images using 21 different methods.
#
function write_vaa3d_job_config {
outputScript=$1;
echo "## Check which queue you may use" >> $outputScript;
# echo "#PBS -q dque" >> $outputScript;
echo "#PBS -q mindscope" >> $outputScript;
echo "# Declare tha... |
c2ed697374533c3cad5348c4d6f040ed20724e7c97dc9f557ddaaffb54daab8a | Shell | 9,867 | 267 | #!/bin/sh
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
HCP_dir="$CBIG_LiGSR_REP_HCP_DIR/S1200/scripts"
restricted_csv="$HCP_dir/restricted_hcp_data/\
RESTRICTED_jingweili_4_12_2017_1200subjects_fill_empty_zygosityGT_by_zygositySR.csv"
unrestricted_c... |
8a41aa4bcf74cb1d890277e21006c4541b14dfcc24a3257d09ed2d4c8307a1b6 | Shell | 9,951 | 279 | #!/bin/bash
packages="WORKBENCH ITK VTK MIRTK SPHERICALMESH"
vars="dir install git branch version folder build cmake_flags make_flags"
usage()
{
base=$(basename "$0")
echo "usage: $base [options]
Setup of the dHCP structural pipeline.
Options:
-j <number> Number of CPU cores to be used for t... |
c0a5a9de6866a7dd272f48ec5410644b2af11e5724c2e3315c88681d30809323 | Shell | 10,006 | 100 | conda activate geomx
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_1p/train/ --cell_cutout 34 --preprocess_workers 20 \
--calc_mean_std --preprocess_channels 0,10,14,19
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_1p/test/ --cell_cutout 34 --preprocess_worke... |
a387a9896a98ecf87d25e2f929afe298ad58e9a8aed2b9592b9a15de963c5d37 | Shell | 10,061 | 210 | #.Project Name
PROJECT_R="1_Epilepsy_RNA"
DIR_H="/home/joonho345/${PROJECT_R}/"
#### RNA_Human ####
DIR_H_H="/home/joonho345/${PROJECT_R}/RNA_Human/"
DIR_H="/data/project/${PROJECT_R}/RNA_Human/"
script_H=${DIR_H_H}script/
logPath_H=${DIR_H_H}out/
temp_H=${DIR_H}temp/
#### RNA_Animal ####
DIR_H_A="/home/joonho345/${PRO... |
b2a925ab289dbb9d6a93afcfd6a9935eefe2aadaa6fb758c5abec3ac3fc13964 | Shell | 10,183 | 274 | #!/bin/sh
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
HCP_dir="$CBIG_LiGSR_REP_HCP_DIR/S1200/scripts"
restricted_csv="$HCP_dir/restricted_hcp_data/\
RESTRICTED_jingweili_4_12_2017_1200subjects_fill_empty_zygosityGT_by_zygositySR.csv"
unrestricted_cs... |
f0ffc5ed5643a3dc0d968f7f8589377962cc0389ff838f1e4ba783126abb63aa | Shell | 10,187 | 100 | conda activate geomx
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_6_1p/train/ --cell_cutout 6 --preprocess_workers 20 \
--calc_mean_std --preprocess_channels 0,10,14,19
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_6_1p/test/ --cell_cutout 6 --preprocess_wor... |
79d8974a9fe73c087c6434d4781c940c70046d857f1ff82a9c16499f9c858e65 | Shell | 10,201 | 414 | #########################################
## script used to run regenie/BOLT/fastGWA/SAIGE
## for the analyses in the REGENIE 2020 paper
## For more details, visit: https://rgcgithub.github.io/regenie/
##
main_dir=/regenie_paper/
code_dir=${main_dir}scripts/
in_raw_dir=${main_dir}input_raw/
files_dir=${main_dir}input/... |
a78a711114ce00925eab7a990ac214b03a77ff626e44157ecbe740d138ff8e3c | Shell | 10,220 | 225 | #!/bin/bash
roi_labeling() {
# -------------------------------------------------------------------------
# Main script to perform labeling of lacuna regions
# -------------------------------------------------------------------------
# Usage examples:
# Slow good run - ~15 min (depends on system)
# time bash rv... |
2ebbdca90975ea85d4876da183e3960add8c38d11e031ce2897d0cbbf664a74f | Shell | 10,259 | 100 | conda activate geomx
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_nc_1p/train/ --cell_cutout 34 --preprocess_workers 20 \
--calc_mean_std --preprocess_channels 0,10,14,19
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_nc_1p/test/ --cell_cutout 34 --preprocess... |
98a93e1d58ba0182da3d1dc258c7b9fbf509171b5a27c2c196a8000560a192a9 | Shell | 10,265 | 260 | #!/bin/sh
#
# Written by Jingwei Li and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
HCP_dir="$CBIG_LiGSR_REP_HCP_DIR/S1200/scripts"
restricted_csv="$HCP_dir/restricted_hcp_data/\
RESTRICTED_jingweili_4_12_2017_1200subjects_fill_empty_zygosityGT_by_zygositySR.csv"
unrestricted_cs... |
cdabe817a82284616920e6a43f81d2a839dc4398c4edb7ea829e13a92aeed159 | Shell | 10,268 | 100 | conda activate geomx
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_2c_1p/train/ --cell_cutout 34 --preprocess_workers 20 \
--calc_mean_std --preprocess_channels 0,10
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_2c_1p/test/ --cell_cutout 34 --preprocess_worke... |
d1d44d060f35bbd0b54b7596ea6ef6260f99d361aaa63a776f62a3571a8686ff | Shell | 10,300 | 100 | conda activate geomx
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_14_1p/train/ --cell_cutout 14 --preprocess_workers 20 \
--calc_mean_std --preprocess_channels 0,10,14,19
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/CRC_14_1p/test/ --cell_cutout 14 --preprocess... |
4c65c24afc9be695f1b8b760e8f3ffbf12465cab66c34a3a16047da617765fba | Shell | 10,377 | 97 | module load Anaconda3
conda activate geomx
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/cosmx/train/ --cell_cutout 100 --preprocess_workers 15 --calc_mean_std
python -m cellcontrast --image_preprocess --preprocess_dir data/raw/cosmx/test/ --cell_cutout 100 --preprocess_workers 15
python src/uti... |
d6b11c9ad23b18be022971933e698de7be0a142fd49de7b980f69fbed1158cf1 | Shell | 10,403 | 324 | #!/bin/bash
CD=${PWD}
#
# syntax: compute_w.sh <rootdir> <reference> <study>
#
# where:
# <rootdir> = main directory where all files can be found
# <reference> = xls file with reference subjects
# <study> = xls file with study subjects
#
# format of xls files:
# row 1: "filename" "variate 1" "variat... |
e4c5f9897c3d552d450b265c774a117f7ffeccec18a3d963347483ead08fd3cb | Shell | 10,530 | 303 | #!/usr/bin/env bash
set -e # stop immediately on error
umask u+rw,g+rw # give group read/write permissions to all new files
# This is a simple little script to cut any volumes from a timeseries that occur
# after a detected outlier. The script is so simple, it might be helpful as a
# template script too.
# ------... |
52e2d5c949a4ad8401bcedc0c97dea4566a7e460fefc2fa793f82a331617aab4 | Shell | 10,534 | 277 | #!/usr/bin/env bash
################################################################################
# Creates a set of files that allows for creating annotations based off dbSNP
# Pulled directly from the ncbi FTP site.
################################################################################
#Setup variabl... |
526cf0da4a3961a91291fe26a2c24f6972060afbfad91b4a9bb219a0a554d4e4 | Shell | 10,555 | 312 | #!/usr/bin/env bash
################################################################################
# Creates a set of files that allows for creating annotations based off dbSNP
# Pulled directly from the ncbi FTP site.
################################################################################
#Setup variabl... |
cfac129f7369a24201da960b9d6599f48cbb9bab71a910ccc47cd1e5b4d2effc | Shell | 10,573 | 370 | #!/bin/bash
####
################################## START OF EMBEDDED SGE COMMANDS ##########################
#$ -S /bin/bash
#$ -cwd
#$ -N segmDM_single
#$ -j y #### merge stdout and stderr
#$ -l P100 -l h_vmem=36G
#$ -l short
#$ -l h_rt=0:15:00
############################## END OF DEFAULT EMBEDDED SGE COMMANDS #####... |
ad6b3961b9694ca2e8917cda1b4ec8e070bf9e5833b01f972a818b999ac1033f | Shell | 10,595 | 321 | #!/usr/bin/env bash
################################################################################
#
# DESCRIPTION:
#
# This script will take a list of BED files and create data sources for
# Funcotator from them.
# This process involves but is not limited to:
#
# - Remove tracks
# - Making coordinates 1-based... |
0fc98c91e68a5c2c0eb361cfa36cd41de871047c34a1c07f7448d9884b87c61b | Shell | 10,654 | 382 | #!/bin/bash
# 切换运行路径到脚本路径
cd $( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
# 使用严格模式
# set -euo pipefail
set -eu
title() {
printf "\n----------\n%s\n----------\n" "$1" >&2
}
download_mm9() {
title "download mm9"
mkdir -p genome
pushd genome
wget https://github.com/Boyle-Lab... |
892ae26b1dd3413e01c341919433778b7a432a7950628619dd1fab19b408a2e3 | Shell | 10,671 | 219 | #!/bin/sh
#
# There are two subjects (with two sessions of data) in the CoRR_HNU dataset involved in the example. To be able to
# separate the data into training and test sets, these two subjects will be treated as 4 subjects (each session is
# considered as a subject). Then the RSFC of each session will be duplicate... |
f6bb338be2b4d1701f98565f1413d703d71d60b2e503d1b9cc7eb2d8cebb9d26 | Shell | 10,725 | 367 | #!/usr/bin/env bash
umask u+rw,g+rw # give group read/write permissions to all new files
set -e # stop immediately on error
<<"COMMENT"
project: deepTUS
first: Lennart Verhagen, Davide Folloni
last: Matthew Rushworth, Jerome Sallet
code: Lennart Verhagen
goal:
create a heatmap of TUS induced changes to connectivi... |
87ee9824bc08c5ac9bc5ed658aa87b21f82d832775a84944c44e5353d867a74e | Shell | 10,743 | 237 | #!/bin/bash
# -------------------------------------------EHT1 ----------------------------------------------------------
#numbers=(1 4 17)
#for num in "${numbers[@]}"; do
# echo "Sample 4: AHA $num"
# python /mnt/d/Code/HeartModelling/generateSimFiles/genS2AHA_continue.py \
# --filePath /mnt/e/Paper4/Simulations... |
af734e13b69a4cc92bf8ba7161e99dd309c90654e71c1958a45464ccc8d778a6 | Shell | 10,763 | 134 | #!/bin/bash
#BSUB -J VAL_NMTUI
#BSUB -o ./VAL_NMTUI_%J.out
#BSUB -e ./VAL_NMTUI_%J.err
#BSUB -W 68:00
#BSUB -q general
#BSUB -n 2
#BSUB -u pasteris@miami.edu
#BSUB -M 5000
#BSUB -R "rusage[mem=5000]"
#
module purge
module load hihg-analysis java/1.8.0_60 R/4.1.0 perl/5.18.1 samtools/1.3 intel/13.0 impi/4.1.1.036
#
for... |
88e31ffd310fcc70efd6368ba324a59cfc59e55147b6b57e9a9f8be72973187b | Shell | 10,777 | 225 | #!/bin/bash
###########################################################
### Full v888 data rebuild for BANC pipeline
###
### Produces all versioned data files and pushes to GCS.
### Prerequisites (must already exist on GCS at v888):
### - synapses_v2_human_readable.csv.gz
### - synapses_v3_human_readable_id_size_pr... |
47fe46599cd0c0368ef7239705c560229ee7fa48f98ac305c98f8403e13b1ece | Shell | 10,794 | 243 | #!/bin/bash
#
#This is a shell program to batch reconstruct images using 24 different methods.
#
# Last change: 2015-08-17. by Hanchuan Peng adding the anisotropic filtering.
#
function write_neuron_tracing_command {
outputScript=$1;
METHOD=$2;
vaa3dProgramPath=$3;
inimgfileTracing=$4;
finalfileFolder=$5;
... |
27a30d4e7ffe2a3bf73638ae265db1181e0bdedae6b5f43b3df874bd931816a0 | Shell | 10,837 | 288 | #!/usr/bin/env bash
set -e # stop immediately on error
umask u+rw,g+rw # give group read/write permissions to all new files
# rsn_vol2surf.sh
# ------------------------------ #
# Help
# ------------------------------ #
usage() {
cat <<EOF
rsn_vol2surf.sh: Project volumetric functional timeseries to cortical sur... |
c639f121dac2626d0f699ae367b96815b57d9597ce9d068fa1e30fbab27a17bb | Shell | 10,910 | 325 | #!/bin/bash
# -------------------------------------------------------------------------
# Script to run ResectVol DL analysis (segmentation and labeling)
# MUST BE RUN FROM WITHIN FOLDER path/to/resectvoldl
# -------------------------------------------------------------------------
# ===================================... |
b39e81deaa14061af8ed1c24d693db0a05a36a9afd030f71204e37d5f7ed2983 | Shell | 10,923 | 97 | #conda activate torch1.7
#cd xxj/attack/TangentAttack-main/
# CGBA CIFAR-10
#python CGBA/attack_gpu.py --gpu 3 --norm l2 --init-rnd-adv --attack_method CGBA --dataset CIFAR-10 --arch gdas
#python CGBA/attack_gpu.py --gpu 3 --norm l2 --init-rnd-adv --attack_method CGBA --dataset CIFAR-10 --arch WRN-28-10-drop
#python C... |
86f9b2e35babc99b6756a10344063fcf625b677c07beb52eb5c6648b19cec811 | Shell | 10,953 | 242 | #!/bin/bash
# =============================================================================
# STARsolo CLI - QC aggregation
# =============================================================================
# Aggregate QC statistics for one or more STARsolo output directories.
# ===========================================... |
d4bd17588ca1c566ee5f1b7de087d8e0f4bedd97bf182d5e5ea50e7968831f8f | Shell | 11,057 | 249 | #!/bin/bash
#
#This is a shell program to batch reconstruct images using 28 different methods.
#
# Last change: 2015-08-17. by Hanchuan Peng adding the anisotropic filtering.
#
function write_neuron_tracing_command {
outputScript=$1;
METHOD=$2;
vaa3dProgramPath=$3;
inimgfileTracing=$4;
finalfileFolder=$5;
... |
1b9e3486e7fea01ace989ced6716804377744cd97dc2f9fb6b28c03b42d2cbfd | Shell | 11,140 | 280 | #!/bin/bash
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
build_vcf_header() {
local vcf_file="$1"
local bgi_file="$2"
local header_file="$3"
local temp_contigs=$(mktemp -p"$WORKING_DIR")
chrs=($(sqlite3 "$input_bgi" "select chromosome from Variant group by chromo... |
0d5eefe307d0dc1f027b81d19aac929f9e35b2fb83616a6b479bb71b1103b307 | Shell | 11,265 | 298 | ## MAIN PIPELINE FILE
## This is the main wrapper file to run the EasySci-RNA computational processing pipeline.
## It takes the raw FASTQ file folder, the sample ID file, the output folder, the STAR index folder, two GTF files (one with every genomic elements and one with only the exons), the file with the random he... |
9e06858a5e1907d2697788659d2a47f70fa639139f78fabbb51abd32b276f1c1 | Shell | 11,395 | 200 | #!/bin/bash
help="
[-i Test folder containing the subdirectories Test_Data and Test_Controls]\n
[-o directory to write the output to, each test will get its own folder there]\n
[-t leave empty or write 'all' to run all test cases, or give a number of individual ones]"
print_help=0
while getopts "hi:o:t:" o;
do
case $... |
312c0d60f2fa121a96371b4057f424905ec719d65339019a90130a651e055e7e | Shell | 11,480 | 215 | #!/bin/bash
export path_htsa_dir=$1
export project_work_dir=$2
export FAP_FASTA=$3
export HPV_CSV=$4
####
if [ -d $project_work_dir/FAP ];
then
rm -r $project_work_dir/FAP
fi
mkdir $project_work_dir/FAP
####
export FAP=$project_work_dir/FAP
cd $FAP
#
scl enable python27 - << \EOF
python /media/storage/HTS/Virus... |
c8cf1684a1ff037d4d3fc865db95fa1823afbbdacef739967c5b8b3ea9751cc7 | Shell | 11,511 | 395 | #!/bin/bash
# =============================================================================
# REPRODUCIBILITY PIPELINE FOR AEnabledLoReg
# =============================================================================
#
# This master script orchestrates the complete reproducibility pipeline for the
# "Contrasting Glob... |
932e3c50e9adcf1e74f692069196c76afe50657e9b5e78b64ebfa5937bdc4ea6 | Shell | 11,592 | 355 | #!/usr/bin/env bash
################################################################################
#
# WARNING: THIS SCRIPT IS UNSUPPORTED!
# USE AT YOUR OWN RISK
#
# DESCRIPTION:
#
# This script builds and runs Funcotator on different data files, depending on
# the options given.
# Must be internally configured to ... |
0a31ceb9fa8278adcad40a646f4489810ef4a0eda83b55ed9d1f484a48e28a32 | Shell | 11,638 | 342 | #!/usr/bin/env bash
set -euo pipefail
# Generate QC report for a precon_all output directory.
# All screenshots come from fsleyes (works headless via PYOPENGL_PLATFORM=osmesa).
# ImageMagick is used only for the 3D tile and PDF assembly.
#
# Behaviour:
# - If surfaces are available -> full PDF report (3 pages)
# -... |
75171bf91ab485bca0a63475961c7598294a6642f80e714a8a870b2e87133d0d | Shell | 11,659 | 284 | #!/usr/bin/env bash
umask u+rw,g+rw # give group read/write permissions to all new files
set -e # stop immediately on error
# when input arguments are provided, use these rather than the instruction file
[[ $# -gt 0 ]] && instruct="$*" || instruct=""
# ------------------- #
# GENERAL DEFINITIONS
# ----------------... |
4e4909a44dbe51874726a0deb262cbf5148a489d320c99c32fd9be10e2b90cb0 | Shell | 11,719 | 288 | #!/usr/bin/env bash
umask u+rw,g+rw # give group read/write permissions to all new files
set -e # stop immediately on error
# ------------------- #
# GENERAL DEFINITIONS
# ------------------- #
source $MRCATDIR/setupMrCat.sh
anaDir="/Volumes/rsfMRI/anaesthesia/analysis"
fingerprintDir="$anaDir/fingerprint"
mkdir -p... |
45d47c13b9c02a0d411eb95acceef53b48960cc5d745a4df3e08772c135bf21c | Shell | 11,849 | 117 | for k in 'EOAD_ADFUS';
do
vcf-concat ${k}_chr1_8564s22.dose.vcf.gz ${k}_chr2_8564s22.dose.vcf.gz ${k}_chr3_8564s22.dose.vcf.gz ${k}_chr4_8564s22.dose.vcf.gz \
${k}_chr5_8564s22.dose.vcf.gz ${k}_chr6_8564s22.dose.vcf.gz ${k}_chr7_8564s22.dose.vcf.gz ${k}_chr8_8564s22.dose.vcf.gz \
${k}_chr9_8564s22.dose.vcf.gz ${k}_... |
53ec3d0ddb048047bb77c1f7bdc14411f58736d99ec929206f92cf0d29d0158e | Shell | 11,849 | 297 | #!/usr/bin/env bash
# Q&A gate for fn-57 — independent external LD matrix corpus.
# Implements the events in PROCEDURE.md. Fail-loud; no silent skips for
# missing science and no green run that leaves telemetry unchecked.
set -euo pipefail
ROOT="$(cd "$(dirname "${BASH_SOURCE[0]}")/../../.." && pwd)"
PROC_DIR="$(cd "$... |
9fb0955515b47fd59869fc558153f4148dd6b1ef57d218cf47bf22028def726e | Shell | 12,002 | 345 | #!/bin/bash
# create_dmg.sh - Create macOS DMG installer from PyInstaller output
# Requires: create-dmg (install via: brew install create-dmg)
set -e
# Configuration
APP_NAME="Membrane Kymograph"
VERSION="0.0.1" # Placeholder version; will be replaced during build process
# Check if PyInstaller created a .app bundl... |
62b40ace6134901b6ba5740d6b7184b3501f0055df8fb7c8b601c364a1bd3c7e | Shell | 12,051 | 249 | #!/bin/bash
###########################################################
### Full v890 data rebuild for BANC pipeline
###
### Cloned from o2_banc_v888_rebuild.sh with three structural changes:
### - banc.version = "890" via banc-startup.R (single source of truth)
### - v3 connectivity + completion read CSV.gz, not p... |
54891a05b489c8e0dbccdc5c089576afe2b103485dc76f2dc3d9117bbf77bdeb | Shell | 12,057 | 314 | #!/bin/sh
#
# Written by Jianzhong Chen and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# Set default value for parameters in optional input arguments
num_leave_out=3
num_inner_folds=10
lambda_set_file=none
metric=predictive_COD
culster=CBIG_cluster
# Set default value for other... |
d1a0626606fd9c3c8e1ddd3229d6fa63e8f8764e29747081045a490887073a2c | Shell | 12,075 | 307 | #!/bin/sh
#
# Written by Jianzhong Chen and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# Set default value for parameters in optional input arguments
num_leave_out=3
num_inner_folds=10
domain=none
eval=none
tree=none
metric=predictive_COD
fold_number=20
cluster=CBIG_cluster
ma... |
2dd899915b83b8a0ff8d074eb6e37ea38d6b4e0bbf80b3a9e34e0856912830ee | Shell | 12,147 | 300 | #!/bin/sh
# Written by Jianzhong Chen and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
# Set default value for parameters in optional input arguments
num_leave_out=3
num_inner_folds=10
group_kernel=none
domain=none
metric=predictive_COD
cluster=CBIG_cluster
# Set default value f... |
69aaed341f61f410f4d2a369558260c64100c07612a39d580d37e82915dc5699 | Shell | 12,226 | 282 | #!/bin/bash
# Bash port of regenie_conditional.py -- same CLI, same operations, for local testing without pandas/python.
# See regenie_conditional.py for the authoritative implementation; keep the two in sync.
set -euo pipefail
REGENIE_COVARIATES="SEX_IMPUTED,AGE_AT_DEATH_OR_END_OF_FOLLOWUP,PC1,PC2,PC3,PC4,PC5,PC6,PC7... |
4dd3262540fd64aca6e279e54ada1a9db74c5bf272508398c39c62de5d947370 | Shell | 12,353 | 241 | #!/bin/bash
[ $# -ge 6 ] || { echo "usage: $(basename "$0") <subject> <hemisphere(L/R)> <segmentation_dir> <output_vtk_dir> <output_wb_dir> <output_temp_dir>"; exit 1; }
subj=$1
h=$2
segdir=$3
outvtk=$4
outwb=$5
outtmp=$6
if [ "$h" == "L" ];then
C='CORTEX_LEFT'
elif [ "$h" == "R" ];then
C='CORTEX_RIGHT';
else
echo ... |
7b92a48f962bd977b405d6b580cc7b3993a2011f3631ce320414394667f220b8 | Shell | 12,589 | 273 | #!/usr/bin/env bash
set -e
# Requirements for this script
# installed versions of: FSL (version 5.0.6)
# environment: as in SetUpHCPPipeline.sh (or individually: FSLDIR, $HCPPIPEDIR_PreFS)
# give Lennart Verhagen (lennart.verhagen@psy.ox.ac.uk) a coffee or a pint
#==============================
# overhead
#====... |
3f7f0c29d77fde2a5d7cc3aa8225f601569ecbf66feaca7bd3e2c22fe0270fdd | Shell | 12,593 | 324 | #!/usr/bin/env bash
# Type-check each integration against the lowest version of every @mlflow/*
# workspace dependency its package.json allows.
#
# Why this exists: in the workspace, node_modules/@mlflow/core is a symlink to
# ../../core (always the latest source), so `tsc`, eslint, and jest all resolve
# @mlflow/core ... |
45a6a2f320481f126866401843f413b84b15598d9d8a7900e73f056fb8d22378 | Shell | 12,607 | 411 | #!/bin/bash
# eval "`sh nrnpyenv.sh`"
# will set bash environment variables so that nrniv -python has same
# environment as python
# May specify the python executable with explicit first argument.
# Without arg use python and if that does not exist then python3
# Overcome environment issues when --with-nrnpython=dyn... |
41454cc19786c2b95e6c1b99038df3e9ebd1ba12e07cf39f78f240528975b0b2 | Shell | 12,639 | 324 | #!/bin/bash
# Written by Yapei Xie and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
#
# Combined wrapper for FC stability and change analyses.
# All steps submit cluster jobs via qsub with PBS afterok dependencies.
# MATLAB jobs include a random sleep (0-60s) to avoid simultaneous... |
a804a51f48ee4548edd395f5fdce914d493763bfa0e7868d72c0eb84b292d587 | Shell | 12,868 | 391 | #!/bin/bash
# Comptox AI Deployment Script (Updated 10/05/2023)
# Overview: This script automates the deployment of Comptox AI on an EC2
# instance. It can also be executed locally for testing purposes. Below are the
# key tasks performed by this script.
# The script currently supports only Linux and macOS.
# Key D... |
aa98a4bd20cb13a7444bd107287daa79ba0102f1e4da886f10e44887ba201f34 | Shell | 12,882 | 394 | #!/bin/bash
####
################################## START OF EMBEDDED SGE COMMANDS ##########################
#$ -S /bin/bash
#$ -cwd
#$ -N run_3dresample
#$ -M chiharu.sako1@gmail.com #### email to nofity with following options/scenarios
#$ -m a #### send mail in case the job is aborted
####$ -m b #### send mail when ... |
e927c9e5c1a58fbcf1c09770298b3fcc19761f9a2002096e6d4bbb33787144bb | Shell | 12,900 | 386 | #!/bin/bash
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); yo... |
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