sha256 stringlengths 64 64 | language stringclasses 27
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ba64e8863d6d136df0504c29b493ecd3e2451e552f9d0a066206f8fd34c25006 | Text | 11,901 | 193 | # Fulldome Camera For Unity
Suite of tools for building games for Fulldome.
Here there are three approaches that can be used to simulate a fisheye lens on Unity.
1. **Fulldome Camera**: Renders the active camera as a 360 panorama (internally a Cubemap) and extracts a Domemaster from it.
2. **VFX Graph** (experimen... |
951d5b4761f5709b28374cbfff1b5793e780005fffe816ad34cdab1f958cea97 | Text | 12,199 | 237 | ########################################################################
# Last updated January 12th, 2026
# The following is a step-by-step workflow for processing barcoded AAV sequencing data from:
# 1) Enhancer/promoter-driven barcode mBC libraries
# 2) U6-driven barcode (oBC) libraries (only when oBC is include... |
144d6f07e16876424ca5e64f48c3db31b4d547708be00f0a52a5c3f1bdfa7ad4 | Text | 12,434 | 218 | Automated analysis tools for fetal and neonatal brain MRI
====================
This repository contains DL pipelines for [MONAI](https://github.com/Project-MONAI/MONAI)-based automated analysis for fetal and neonatal brain MRI.
- The repository, scripts and models were designed and created at the Department of Early... |
473b921e6f027757ca71029f85cf21496bf8cd4ad0685484d79008ec1a4aeff7 | Text | 12,800 | 161 | [](https://pepy.tech/project/facemap)
[](https://pepy.tech/project/facemap)
[](https://github.com/MouseLand/facemap/stargazers)
[![GitHub forks]... |
cfbf43162383d495aead02c7c839b4b58ba50470b1368f17dda2a851ad6f8154 | Text | 13,685 | 172 | [](https://pepy.tech/project/pyleida)
# PyLeida
`pyleida` is a Python toolbox to apply the <i><b>Leading Eigenvector Dynamics Analysis</b></i> (<b>LEiDA</b>) framework to <i>functional magnetic resonance imaging (fMRI) data</i>. It contains all the necessary tools to apply... |
4b4f98d3581752834dd03439cb9976417fc68771fd50be03437e46730ad8ede3 | Text | 14,423 | 365 | > [!IMPORTANT]
> We are no longer actively maintaining this repository. All active work by the Allen Institute for Cell Science is located under the **[AllenCell](https://github.com/AllenCell)** organization.
# AICSImageIO
> [!WARNING]
> AICSImageIO is now in maintenance mode only. Please take a look at its compat... |
e5a84e5f40ebb2aab1f6a53dada0659871f54c79f97ea285f04dabb3856e77ec | Text | 15,590 | 270 | 
# Unsupervised and supervised discovery of tissue cellular neighborhoods from cell phenotypes with CytoCommunity
### _2025-04-10: We are excited to annouce an extended version "CytoCommunity2" (https://github.com/huBioinfo/CytoCommunity-plus)._
#### _Advantages of CytoCommunity+:_
####... |
846480a468a7eced020e022c7620dead0f815bef352db1a2df2dbf50968e990a | Text | 15,653 | 217 | # VoxelMorph: learning-based image registration
**VoxelMorph** is a general purpose library for learning-based tools for alignment/registration, and more generally modelling with deformations.
> ⚠️ **Warning**: VoxelMorph pytorch is under active development. Interfaces may change.
> **For users who want to use the s... |
480d936af3a3d9b43dd6f541e8c166431a083e6185341fb2d5e321be24bafd58 | Text | 15,723 | 132 | # Nexis
Repository Owner: [Justin Torok](http://github.com/justin-torok) (Email: justin.torok@ucsf.edu)
Project Lead: [Chaitali Anand](http://github.com/Chai1811) (Email: chaitali.anand@ucsf.edu)
The following code was developed for running the Nexopathy in silico (NexIS) model described in Anand, *et al.*, 2022 (pre... |
a36912e9dd4d88eaebf4ee667170958e9ff8cc6889ba2821885af6776f43c3a0 | Text | 16,026 | 631 | [README (1).md](https://github.com/user-attachments/files/23812543/README.1.md)
# GENIA Framework v2.0
**Genomically and Environmentally Networked Intelligent Assemblies**
A comprehensive computational framework for rational design of synthetic microbial communities for multi-pollutant biodegradation.
[](https://doi.org/10.5281/zenodo.592253) [](https://vscode.dev/github/iandol/opticka) [ & [Justin Torok](https://github.com/justin-torok)
MATLAB functionality for creating 3D human & mouse brain renderings, with many options. This is a tool for visualizing per-voxel or per-region data, as well as connectome data, in a 3D surface representation ... |
f720641433aa00bbf21d8aece5ea17d845e94acfcb293872f63aecd2fa8e4ab9 | Text | 17,601 | 365 | [](https://doi.org/10.5281/zenodo.19008090)
# DeepDrug Protein Embeddings Bank (DPEB) : A Multimodal Human Protein Embeddings Data
This repository contains the source code and resources for the DeepDrug Protein Embeddings Bank (DPEB), a multimodal databa... |
a06b02a587e5341e8dddcd5bccd52c9e4c43c2937efc71bbb39a32cf80f5e105 | Text | 18,616 | 542 | <div align="center">
<picture>
<source media="(prefers-color-scheme: dark)" srcset="logo_dark_bg.png">
<source media="(prefers-color-scheme: light)" srcset="logo_white_bg.png">
<img alt="NanoporeToBED Pipeline Logo" src="logo_white_bg.png" width="400">
</picture>
**Nanopore Methylation Processing & B... |
d3cbe4cf93adfc8053cd8da3e4b1aa67d02d591fd2528c82784293a69e44875d | Text | 18,685 | 451 | # Incorporating Normal Periventricular Changes for Enhanced Pathological White Matter Hyperintensity Segmentation: On Multi-Class Deep Learning Approaches
[](https://opensource.org/licenses/MIT)
[](https://doi.org/10.5281/zenodo.592253) [](https://github.com/iandol/opticka/actions/workflows/matlab-tests.yml) 
- [Key Features](#key-features)
- [Training Data Preparation](#training-data-preparation)
- [Preprocessing](#preprocessi... |
71fd9883bb58418a0b971f8d1d780eb2c0c1a9f425f76511e727f0627d352270 | Text | 21,753 | 683 |
# SCP: Single-Cell Pipeline
<!-- badges: start -->
[](https://github.com/zhanghao-njmu/SCP)
[](https://github.com/zhanghao-njmu/SCP)
[ is released as a self-contained tar.gz file that can be unpacked directly on the system, without the need to configure the computing environment. Because it has assembled all of the software-required dependencies, which are pre-compiled to run on most Linux distributions.
Y... |
5aba0569da09ff8fb83a2c9148870902b9fed345c030607fc368edc0521b8918 | Text | 23,039 | 866 | # NeuroSA-HO: Higher-Order Neuromorphic Ising Machines
This repository contains data, software, and hardware code for the paper:
**Higher-order neuromorphic Ising machines—autoencoders and Fowler-Nordheim annealers are all you need for scalability**
Faiek Ahsan *et al.*, *Nature Communications*, 2026.
The code imp... |
2c286408d7cfd78b68cbe3914476a2b79282a9828066adca4a2b7f49a2c8dfd9 | Text | 23,261 | 474 | # DeepRelaxo
**[Fast Mono-Exponential Magnitude Brain R2* Mapping With Reduced Echoes Using Self-Supervised Deep Learning](https://onlinelibrary.wiley.com/doi/10.1002/mrm.70405?af=R)**
[MRM 2025](https://onlinelibrary.wiley.com/doi/10.1002/mrm.70405?af=R) | [HuggingFace](https://huggingface.co/sunhongfu/D... |
38bddad75b24146a4c2646f2f9ef0463fb9f02b97b4f201f08015b1b6c215212 | Text | 29,571 | 832 | # MS3SEG: A Multiple Sclerosis MRI Dataset with Tri-Mask Annotations for Lesion Segmentation
[](https://opensource.org/licenses/MIT)
[](https://cr... |
962a4ef601c25298526162f0f95ae6f11b0833b0de658be3656e01435fb733df | Text | 35,424 | 348 | # FEABAS
FEABAS (Finite-Element Assisted Brain Assembly System) is a Python library powered by finite-element analysis for stitching & alignment of serial-sectioning electron microscopy connectomic datasets.
[](https://opensource.org/licenses/MIT) [!... |
5a12f5684df4fdb2edd8175a32a703609178f9117fb9315b0ed3dc2159295472 | Text | 47,744 | 928 | # STARCall: Stitching Alignment And Read CALLing for in situ sequencing experiments
This repository is a full data pipeline for the analysis of FISSEQ (Flourescent in-situ sequencing) data.
This readme will give an overview of the pipeline and how to run it, for more information the api reference
for the starcall pyth... |
8811dcdd61494a3f4279160d712e5b5e183db03ccb9b0b3e6aa6529dbd68e047 | Text | 48,284 | 520 |
# What's new
**OrthoFinder has a new home: https://github.com/OrthoFinder/OrthoFinder**
All future development and support will take place there. The future of OrthoFinder is being led by an awesome team:
- Steve Kelly - PI
- Laurie Belcher
- Jonathan Holmes
- Yi Liu
and David Emms will continue in a supporting role... |
395dab1ec9566a53cbaf80499e1dd24423c5777195f574e328df70a7db58ab24 | TypeScript | 1,192 | 37 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
2578fd21d9088319b83a2b5e1df90c42c7aae4264959c043313a961cdac4da29 | TypeScript | 2,329 | 74 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
a33ed57c35024ebd9be3ad10f6a27bd5684096494de86af1f7e1c30a169c697b | TypeScript | 3,214 | 117 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
bf5f3afb6a228442a3c0409a99048fee8837fa4a0573069ef72a0c86463b9c8f | TypeScript | 3,795 | 125 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
198c9b50c38c474cd25b30191c311c80e263397468ec864cc3cd9752c92c9a48 | TypeScript | 3,890 | 126 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
690d2475225eaf34ba2bbd6f329d9d8ca66146c855e0cbf88a223a5f8aef026e | TypeScript | 8,177 | 264 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
00f4d3c426097058a7696c0ba61ed560ae1452722bf2c7333daeb37bc364add1 | TypeScript | 12,993 | 418 | /*
* Copyright 2022 Google LLC.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in... |
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