sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
2145d307ec273d62b03ae09bf1b6be45741d8dec388df759d58008b7b79a2d91 | C/C++ | 8,664 | 213 | /*************************************************************************//*!
* Title: tImage/distance_transform.h
* Description: Implements drawing operations on images without the need
* for the libRender library.
*
* Author: Brian Amberg, 2006-2007
* Computer Science Depart... |
5b2a91103bbafeceb6fda27842708a04f7251bbd1679cbeecd29f72ab5e82d27 | C/C++ | 8,677 | 270 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
2ac5fa1188f5af40e6ddb9c22e222af8b27828f78c57077924af485203864ab3 | C/C++ | 8,709 | 237 | #pragma once
#include <ATen/Parallel.h>
#include <ATen/NumericUtils.h>
#include <ATen/cpu/vec/vec.h>
#include <ATen/cpu/vec/functional.h>
#include <ATen/native/ReductionType.h>
#include <c10/util/irange.h>
#include <ATen/OpMathType.h>
#include <ATen/native/cpu/utils.h>
namespace at::native {
inline namespace CPU_CAPA... |
b99f81492ba56ad0d17a24a3dec0ebfc4af1efa82ef5081b464710aaebdcb095 | C/C++ | 8,742 | 275 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
1ac007878b57b4adfb719cd1a96233fa98d36bfff84fe2423ea434c9fd3115d1 | C/C++ | 8,772 | 298 | #pragma once
#include <ATen/cpu/vec/intrinsics.h>
#include <ATen/cpu/vec/vec_base.h>
#include <ATen/cpu/vec/vec_mask.h>
namespace at::vec {
inline namespace CPU_CAPABILITY {
#if defined(CPU_CAPABILITY_AVX2) && !defined(_MSC_VER)
template <typename T, int dst_n, typename mask_t, int mask_n>
struct VecMaskLoad<
T... |
5fa1904ea9ffc729a4a680d49e155218141e372849bbdef9f897723055626a53 | C/C++ | 8,776 | 243 |
/*
* Some useful stuff....
*/
#define ABS(x) ((int)(x) < 0 ? (int)(-x) : (int)(x))
#define MAX(x,y) ((int)(x) < (int)(y) ? (int)(y) : (int)(x))
#define MIN(x,y) ((int)(x) < (int)(y) ? (int)(x) : (int)(y))
/*
* convert hershey byte to coordinate
*/
#define COORD(x) ((int)(x) - (int)'R')
/*
* Max Number of Her... |
1fe1b7fcd4b4935c5bb96265de7f47721b60de0b099aa0806c6486084a52de69 | C/C++ | 8,781 | 328 | /*=========================================================================
Program: ALFABIS fast medical image registration programs
Language: C++
Website: github.com/pyushkevich/greedy
Copyright (c) Paul Yushkevich, University of Pennsylvania. All rights reserved.
This program is part of ALFABIS: Ada... |
74ad9ba96df4f9ce8ce554bd567308ecfa60010e2eeb542e6691bc48bc51cf78 | C/C++ | 8,797 | 275 | /////////////////////////////////////////////////////////////////////////////
// Name: wx/wxLatexDC.h
// Purpose: wxLatexDC
// Author: Christoph Schmidt-Hieber, based on dcsvg by Chris Elliott and
// dcpsg by Julian Smart, Robert Roebling, Markus Holzhem
// Modified by:
// Created:
// Copyr... |
bf3807695ca07f53f32d36077b9fc2551d82e59f1220e42797596cfe2048d68c | C/C++ | 8,804 | 236 | /***************************************************************************************************
* Copyright (c) 2017 - 2022 NVIDIA CORPORATION & AFFILIATES. All rights reserved.
* SPDX-License-Identifier: BSD-3-Clause
*
* Redistribution and use in source and binary forms, with or without
* modification, are p... |
b8ab547cc97230cec6860049ad1085417fc5c876197fb5f5a16e00569341ee8b | C/C++ | 8,807 | 280 | #pragma once
// DO NOT DEFINE STATIC DATA IN THIS HEADER!
// See Note [Do not compile initializers with AVX]
#include <ATen/cpu/vec/vec256/vec256_16bit_float.h>
#include <c10/util/irange.h>
namespace at::vec {
// See Note [CPU_CAPABILITY namespace]
inline namespace CPU_CAPABILITY {
#if defined(CPU_CAPABILITY_AVX2)
... |
99f83fca7f70ebb3ebc34511eb6b9187f295d133ff2ffce33cfe95193670e392 | C/C++ | 8,812 | 200 | // Some stateful GPU libraries, such as cuDNN, cuBLAS, use handles to store states.
// These handles are tied to device, and these libraries requires/recommends not to
// share handles across host threads.
//
// These libraries recommend using one handle per host thread. We may not want to do
// this because threads ar... |
19c9bbbaecd20f261bbf09b6a6acb7ebcee8e474d3d0940763c50d2ab4ffeaee | C/C++ | 8,830 | 301 | /*
* Copyright (c) Facebook, Inc. and its affiliates.
* All rights reserved.
*
* This source code is licensed under the BSD-style license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <algorithm>
#include <cassert>
#include <cmath>
#include <cstddef>
#include <c... |
fe11da89ea0d89a4b24a32bbb063e6e3519fa23e58c74269d82fa874b2a072ba | C/C++ | 8,830 | 294 | /*
* SSE2 implementation of vector oprations (64bit double).
*
* Copyright (c) 2007-2010 Naoaki Okazaki
* All rights reserved.
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software w... |
ecad978b2a7c94402924cd7efb9a8f60416c6ef3a4f0859daba0e95f1de705ad | C/C++ | 8,857 | 334 | #ifndef CUDA_FFT_H_
#define CUDA_FFT_H_
#include "src/acc/cuda/cuda_settings.h"
#include "src/acc/cuda/cuda_mem_utils.h"
#include <cuda_runtime.h>
#include <cufft.h>
#ifdef DEBUG_CUDA
#define HANDLE_CUFFT_ERROR( err ) (CufftHandleError( err, __FILE__, __LINE__ ))
#else
#define HANDLE_CUFFT_ERROR( err ) (err) //Do not... |
0ec1366463240e70b19bb25c6346af723798834e5f919de4bfe5f1d869d66dae | C/C++ | 8,896 | 219 | //***********************************************************************************************
//
// Copyright (c) 1993-1997 Axon Instruments.
// All rights reserved.
// Permission is granted to freely to use, modify and copy the code in this file.
//
//************************************************... |
fb1285fdcbee2ece40abf88bf9406240e123a9556e256c809de0ecbd4ab6454c | C/C++ | 8,901 | 264 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can ob... |
06e36d144c6ce80629500cc23d864bb26e2a4c697cfe92854c9cf411fee46587 | C/C++ | 8,918 | 309 | #pragma once
#include <ATen/core/TransformationHelper.h>
#include <c10/util/Half.h>
#include <c10/util/BFloat16.h>
#include <c10/util/MathConstants.h>
#include <c10/macros/Macros.h>
#include <cmath>
#include <limits>
#include <optional>
#include <type_traits>
/**
* Distributions kernel adapted from THRandom.cpp
* ... |
200004a54e3234faf9b95a901e6e7950062060de90b89be2287ae7b8522437c0 | C/C++ | 8,964 | 254 | /////////////////////////////////////////////////
//
// Name: Neuralynx Error Constants
//
//
// File Name: NLX_Error.h
//
//
// Description:
// This is the file which holds all the error codes from
// all NLX Classes
//
// Copyright 1999 @ Neuralynx, Inc.
//
// Author: Casey Stengel... |
4f7d9e2c2880dff65834dd5df47e9d54526e1ddf5cb752dde4f13be7224304a8 | C/C++ | 8,973 | 287 | #ifndef __LIBGRAVIS_MESH_H__
#define __LIBGRAVIS_MESH_H__
/******************************************************************************
** Title: Mesh.h
** Description: Mesh representation.
**
** Author: Jean-Sebastien Pierrard, 2005
** Computer Science Department, University Basel (CH)
**... |
d8126d82e428e5e13a02f8c136d6dbbb5416e492b2db643994f1f37fc81ad19c | C/C++ | 9,006 | 264 | /***************************************************************************
*
* Author: "Takanori Nakane"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
d0b0f66aec71db886bc10fbfbcf6fd5c021b21a21e5ce9125429e8e9c408dfae | C/C++ | 9,008 | 223 | /* FILE event.h */
/* ******************************************************************** */
/* Add in missing stuff, either newer than this file, or obsolete: */
/* */
/* Only difference from event.h is that we've added TARGET_RE_[5-9] and
TARGET_RE_[5-9].POLAR */
# define TARGET_RE_5 445 /* Pl... |
e6acd890a6180bf24a55655d5709ef0f24c742859b884d78b195bd0a1f783a2d | C/C++ | 9,032 | 222 | /* FILE event.h */
/* ******************************************************************** */
/* Only difference from event.h is that we should add TARGET_RE_[5-9] and
TARGET_RE_[5-9].POLAR (?) */
/* ******************************************************************** */
/* READ IN event.h from reach here: */
/*... |
65368e639d6511882ee7a89c1f906be814dbb76a12704a40ffb091fcc5a1286e | C/C++ | 9,035 | 324 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
fcfa704ad7965355398ca5d776714a60acbe66ba3379cdc1d5011b4df5de70fb | C/C++ | 9,054 | 337 | /* Portions of this code are under:
Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved.
*/
#ifndef HIP_FFT_H_
#define HIP_FFT_H_
#include "src/acc/hip/hip_settings.h"
#include "src/acc/hip/hip_mem_utils.h"
#include <hip/hip_runtime.h>
#include <hipfft/hipfft.h>
#ifdef DEBUG_HIP
#define HANDLE_HIPF... |
3c913196359c230216f2fe7a53b9e098692c07e04953726466ff6208dde2d91f | C/C++ | 9,070 | 298 | /*
* SSE/SSE3 implementation of vector oprations (32bit float).
*
* Copyright (c) 2007-2010 Naoaki Okazaki
* All rights reserved.
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Softwar... |
3658f045e368fd8817b8b226597ad12435991656b50711b8e02c163bdc37b6fd | C/C++ | 9,075 | 208 | #pragma once
#include <ATen/core/Tensor.h>
#include <ATen/TensorUtils.h>
#include <c10/util/strides.h>
#include <utility>
#include <vector>
#ifndef AT_PER_OPERATOR_HEADERS
#include <ATen/CPUFunctions.h>
#include <ATen/Functions.h>
#include <ATen/NativeFunctions.h>
#else
#include <ATen/ops/bmm.h>
#include <ATen/ops/e... |
b17128625016cf9c6011d2ce2d9b55b84cc428657bfe5fa8e7490ca354d733b1 | C/C++ | 9,094 | 358 | #ifndef NEW_STACK_HELPER_H
#define NEW_STACK_HELPER_H
#include "buffered_image.h"
#include <src/jaz/math/t_complex.h>
#include <src/jaz/math/fft.h>
#include <vector>
#include <omp.h>
class NewStackHelper
{
public:
template <typename T>
static BufferedImage<T> extractSliceZ(const RawImage<T>& img, int z);
... |
0dfd0cf92f449b69b259ecd77395e18ebb52515a6d9923d2eb001e47f0336a05 | C/C++ | 9,123 | 246 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
e106c00241c661838d73c6aaf785e63858a8fd8a446a9990d22d0b7383ac297e | C/C++ | 9,153 | 304 | /*
Implements AdaBoost learning and classification.
Implemented by Hongzhi Wang 07/18/2010
A few improvements that significantly speedup the code were made by Paul Yushkevich on 07/22/2013.
*/
#include <stdio.h>
#include <vector>
#include <string>
#include <cmath>
#include <algorithm>
#include<time.h>
using namespac... |
6629c251f1e30e52f22de8be0d150c2c43b7bf6c7588ee83b1ef08691bdc210a | C/C++ | 9,186 | 250 | // Copyright 2005, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
8764b8844f83a2cfb7c53b7e490f4b5df234c4cd78ab42ef0dfd04f84ad14541 | C/C++ | 9,197 | 232 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2011-2018 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You c... |
8e7fddbbe4654f25c4a534686849bd9949432b3827fc56c2bf856c20a4c6d9df | C/C++ | 9,218 | 254 | /////////////////////////////////////////////////
//
// Name: Neuralynx Error Constants
//
//
// File Name: NLX_Error.h
//
//
// Description:
// This is the file which holds all the error codes from
// all NLX Classes
//
// Copyright 1999 @ Neuralynx, Inc.
//
// Author: ... |
71475229496b67754b68d6c90d55b6db8a6f3e07cb1081c823d3bff62807fe35 | C/C++ | 9,224 | 347 | #ifndef MKL_FFT_H_
#define MKL_FFT_H_
#include <vector>
#include <src/complex.h>
/*
#include <mkl.h>
#ifdef DEBUG_MKL
#define HANDLE_MKL_ERROR( err ) (MKLHandleError( err, __FILE__, __LINE__ ))
#else
#define HANDLE_MKL_ERROR( err ) (err) //Do nothing
#endif
static void MKLHandleError(MKL_LONG err, const char *fil... |
caccb3cae5d2fbfcbb320c0f68e8b690eb3e651f87a2118ece957bf7772ec16e | C/C++ | 9,226 | 235 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You c... |
4adcf41b6524915dafe2950a9603eb937d6931a32449fb2f1fa1153571b09957 | C/C++ | 9,241 | 266 | // This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
// This program is distributed in the hope that it will be use... |
e6594786ca3fe2540775580475987f461a22f7df5292e592c86551a06df4a95f | C/C++ | 9,253 | 202 | // Header file for the stimfit namespace
// Routines for measuring basic event properties
// last revision: 24-Jan-2011
// C. Schmidt-Hieber, christsc@gmx.de
// This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Fre... |
203c4f7fc74b5598438614c42e7ef0a9d1388785ca6ce788ea579101f2fa1e0f | C/C++ | 9,285 | 221 | #pragma once
#include <ATen/Tensor.h>
#include <c10/core/Device.h>
#include <c10/cuda/CUDACachingAllocator.h>
#include <c10/cuda/CUDAGraphsC10Utils.h>
#include <c10/cuda/CUDAGuard.h>
#include <c10/cuda/CUDAStream.h>
#include <c10/util/flat_hash_map.h>
#include <limits>
#include <optional>
#include <stack>
#include <v... |
c573d2716e8cd1381893b66f9346036dfad9a751590707979bac5c01690a20e2 | C/C++ | 9,304 | 309 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can ob... |
e35878eb2355b79fb48bedb3e80d7b2b4b7dc58b85265306a68b659c6bbb92bb | C/C++ | 9,351 | 219 | // IgorBin.h -- structures and #defines for dealing with Igor binary data.
#ifdef __cplusplus
extern "C" {
#endif
// All structures written to disk are 2-byte-aligned.
#if GENERATINGPOWERPC
#pragma options align=mac68k
#endif
#define C_ASSERT(e) extern void __C_ASSERT__(int [(e)?1:-1])
#if 1 // def ... |
a16430f942945c20062b1a788fd0a84c23a07a6813128d767bbfcc8581d9f6ec | C/C++ | 9,369 | 281 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
521b1bd09594f62e118663b765778b3ef6e7ce1f171bb801609782eb961f41f8 | C/C++ | 9,417 | 417 | #ifndef SIMILARITY_H
#define SIMILARITY_H
#include "raw_image.h"
#include <src/jaz/math/fft.h>
#include <src/macros.h>
#include "padding.h"
class Similarity
{
public:
template<typename T>
static BufferedImage<T> convolution(BufferedImage<T>& i0, BufferedImage<T>& i1);
template<typename T>
static Buffer... |
a9360ca9c1813e020ade8b40219163e869d3539ec87745076691fb98b1e72be4 | C/C++ | 9,493 | 344 | #pragma once
#include <ATen/OpMathType.h>
#include <ATen/native/DispatchStub.h>
#include <ATen/native/TransposeType.h>
#include <c10/util/complex.h>
#include <c10/core/ScalarType.h>
#include <c10/core/Scalar.h>
#include <ATen/Config.h>
namespace at::native::cpublas {
namespace internal {
void normalize_last_dims(
... |
2a8250f7b8f9cf273ad131bb1b50682873e24808177ae4e0a9501e49be281924 | C/C++ | 9,520 | 300 | #ifndef _NLX_CODE_H_69696913
#define _NLX_CODE_H_69696913
//#pragma pack(push, before_nlx_code)
//#pragma pack(1)
#include "compatibility.h"
#include "Nlx_DataTypes.h"
//returns whether already opened CFile contains a nlx header (aka '########')
BOOL HasHeader(std::fstream & File_In);
BOOL HasHeader(int fd);
//Disp... |
da649d6d0d8145cb068b634762a349494bff9b8a95258d015e557525a2b5a4e5 | C/C++ | 9,548 | 306 | /******************************************************************************
** Title: io/array/a.h
** Description: Input/Output for tArrays.
**
** Author: Brian Amberg, 2006
** Computer Science Department, University Basel (CH)
**
**************************************************... |
2134b11c60d315237e8ebaf95ac4ec47a5fc48ae35cc21be238bf75e64dd5123 | C/C++ | 9,603 | 206 | // Copyright 2008, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
d104eba0548dd90abc4c9625071885c5afa8967924cd13a71c17be42888691c0 | C/C++ | 9,628 | 271 | /*
* This file is part of Healpix_cxx.
*
* Healpix_cxx is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* Healpix_cxx is... |
82b37a5b59fb6de9e3dc5da94803a997fb3abe7d58e7441f00ff836a5783edc0 | C/C++ | 9,648 | 374 | /*
* This is a convenience header file providing compatibility utilities
* for supporting different minor versions of Python 3.
* It was originally used to support the transition from Python 2,
* hence the "3k" naming.
*
* If you want to use this for your own projects, it's recommended to make a
* copy of it. We... |
65561663685f0ea82198f1e8ba03a380553223744b88dc2ed869285943e7e351 | C/C++ | 9,705 | 262 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2007-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0... |
f6927b36bd820ffd4f4428fc225cb2e1481de1d7f04eea33bbd089437b92e8cc | C/C++ | 9,712 | 301 | #pragma once
#include <ATen/cpu/vec/intrinsics.h>
#include <ATen/cpu/vec/vec256/vsx/vsx_helpers.h>
#include <ATen/cpu/vec/vec_base.h>
namespace at {
namespace vec {
// See Note [CPU_CAPABILITY namespace]
inline namespace CPU_CAPABILITY {
template <>
struct is_vec_specialized_for<int64_t> : std::bool_constant<true> {}... |
ba2c627c49347a9418136d9eeff9b848cc805f1f6dbd5ecea05f2613c3ff9331 | C/C++ | 9,776 | 271 | #ifndef __itkOrientedRASImage_h_
#define __itkOrientedRASImage_h_
#include "itkImage.h"
namespace itk {
/**
* Oriented image with RAS physical coordinates (as opposed to LPS)
*/
template <class TPixel, unsigned int VImageDimension>
class ITK_EXPORT OrientedRASImage : public Image<TPixel, VImageDimension>
{
public... |
e320d91fd5926ef8e2090a0d51f3108c1d3afb28b911a562c0f65cd275a3886d | C/C++ | 9,817 | 232 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a cop... |
8c301f51d568e57d188cd086023dc808272cd46ec9e078f7ee3101f1a6400aaa | C/C++ | 9,820 | 300 | #ifndef _NLX_CODE_H_69696913
#define _NLX_CODE_H_69696913
//#pragma pack(push, before_nlx_code)
//#pragma pack(1)
#include "compatibility.h"
#include "Nlx_DataTypes.h"
//returns whether already opened CFile contains a nlx header (aka '########')
BOOL HasHeader(std::fstream & File_In);
BOOL HasHeader(int f... |
5b9b4ec844ddd26d56d0675a6797493fc7ca941b6c4e91b6dd5d99966ae5aa98 | C/C++ | 9,861 | 209 | #ifndef NUMPY_CORE_INCLUDE_NUMPY_RANDOM_DISTRIBUTIONS_H_
#define NUMPY_CORE_INCLUDE_NUMPY_RANDOM_DISTRIBUTIONS_H_
#ifdef __cplusplus
extern "C" {
#endif
#include <Python.h>
#include "numpy/npy_common.h"
#include <stddef.h>
#include <stdbool.h>
#include <stdint.h>
#include "numpy/npy_math.h"
#include "numpy/random/bi... |
6a4f4f49970e2454a57b9dabca28a5b7cb802d56e00ec53ad15177568bc87764 | C/C++ | 9,881 | 285 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
ade18333bc6fd29180ed061c6fdf08d2fa81522e71c6af5160523dbc45fcc48c | C/C++ | 9,922 | 311 | #pragma once
// Shared code for bfloat16 and float16.
// DO NOT DEFINE STATIC DATA IN THIS HEADER!
// See Note [Do not compile initializers with AVX]
namespace at::vec {
inline namespace CPU_CAPABILITY {
// Shared implementation between Vectorized<c10::Half> and
// Vectorized<c10::BFloat16>. Uses CRTP to allow deriv... |
5115d5a8ced36a20b8cec034812f7b0d2ac20d511a147f9beea9b0ef27d94b56 | C/C++ | 9,952 | 232 | // Copyright 2007, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
58267c98bac8dafe79ff5a65d1480f89f3ac8131311958ae4e2c9dc1e7ec3265 | C/C++ | 10,034 | 301 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2012 Désiré Nuentsa-Wakam <desire.nuentsa_wakam@inria.fr>
// Copyright (C) 2012 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. ... |
c1b8eed27eaa346b91abbddac32894e67aa72d9b549b8a9543d867ebee545615 | C/C++ | 10,039 | 309 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
da9bdbadca6dd077759a9eff5a449c2ac7d04ccc352b72a8632fc2213e6d02dd | C/C++ | 10,058 | 313 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
f1fe9a2136806068edae1170856f54301ba16f71e4f94bce6bea66d3238b17d3 | C/C++ | 10,073 | 301 | #pragma once
#include <ATen/cpu/vec/intrinsics.h>
#include <ATen/cpu/vec/vec256/vsx/vsx_helpers.h>
#include <ATen/cpu/vec/vec_base.h>
#include <c10/util/qint32.h>
#include <array>
// This file defines Vectorized<> for the quantized types.
//
//
// Currently, we simply use these classes as efficient converters between... |
5d3c6afa2d233016f1830f3a505ebe9a679abd20eb30d8553bcc338e7a1c288f | C/C++ | 10,085 | 268 | #ifndef DIFF2_IMPL_KERNELS_H_
#define DIFF2_IMPL_KERNELS_H_
#include <vector>
#include <iostream>
#include <limits>
#include <chrono>
#include <algorithm>
#include <cassert>
#include <sycl/sycl.hpp>
#include "src/acc/acc_projectorkernel_impl.h"
#include "src/acc/sycl/sycl_dev.h"
#include "src/acc/sycl/sycl_kernels/sy... |
a48b59c564758a08750cffc20a849bd085ff1ad7e9c2b1266ea294f27d4e5aa5 | C/C++ | 10,198 | 410 | /*************************************************************************//*!
* Title: tImage/operators.h
* Description: Implements operators on tImages
*
* Author: Brian Amberg, 2006-2007
* Computer Science Department, University Basel (CH)
*************************************************... |
40d9ca6042bdfd8f724d6e4ca97f0994d7a8a7b993c5f312452aa3df642eb538 | C/C++ | 10,224 | 264 | #pragma once
#include <c10/macros/Macros.h>
#ifdef __OBJC__
C10_DIAGNOSTIC_PUSH_AND_IGNORED_IF_DEFINED("-Wdeprecated-declarations")
#include <Metal/Metal.h>
C10_DIAGNOSTIC_POP()
typedef id<MTLLibrary> MTLLibrary_t;
typedef id<MTLFunction> MTLFunction_t;
typedef id<MTLComputePipelineState> MTLComputePipelineState_t;
typ... |
a16fb7dfc3a1fd1b1aeb99c40bcc24c14b175bc151296a2d4ea65c07c184a1d8 | C/C++ | 10,241 | 312 | /*****************************************************************************
**
** cfs.h
** 78 cols --->*
** Header file for MSC version of CFS functions.
** Definitions of the structures and routines for the CFS filing *
** system. This is th... |
1ec858bbb9ed8a8bb553232df016437c080b2670f00453b4de297c286eb78c21 | C/C++ | 10,242 | 259 | // Copyright 2008 Google Inc.
// All Rights Reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions a... |
5011c2ddb217cdfa02917e395080b78ed6320a0b976954426afb6127ddc8135f | C/C++ | 10,246 | 378 | #pragma once
// DO NOT DEFINE STATIC DATA IN THIS HEADER!
// See Note [Do not compile initializers with AVX]
#include <ATen/cpu/vec/intrinsics.h>
// clang-format off
#include <ATen/cpu/vec/vec_base.h>
#include <ATen/cpu/vec/vec512/vec512_float.h>
#include <ATen/cpu/vec/vec512/vec512_bfloat16.h>
#include <ATen/cpu/ve... |
39e57c184071b1cc8fc2b75a8f77d55cfcf077e0318c9829e8fa919c2d999f46 | C/C++ | 10,255 | 332 | #pragma once
#include <optional>
#include <string_view>
#include <ATen/Config.h>
#include <ATen/native/DispatchStub.h>
// Forward declare TI
namespace at {
class Tensor;
struct TensorIterator;
namespace native {
enum class TransposeType;
}
}
namespace at::native {
enum class LapackLstsqDriverType : int64_t { Gels... |
104375f6433f1c8ff728dd742820962aed29ddff85ef87146be444268ad00015 | C/C++ | 10,260 | 287 | #pragma once
#include <ATen/MemoryOverlap.h>
#include <ATen/Tensor.h>
#include <c10/core/DispatchKey.h>
#include <c10/core/DispatchKeySet.h>
#include <c10/core/MemoryFormat.h>
#include <c10/core/TensorImpl.h>
#include <c10/util/ArrayRef.h>
#include <c10/util/Exception.h>
#include <c10/util/Metaprogramming.h>
#include <... |
f7becb291ce1c7270f4fec9ca24609b3e84665a3bde7178f501dbc69325988e1 | C/C++ | 10,343 | 275 | #pragma once
#include <ATen/core/Tensor.h>
#include <ATen/native/ResizeCommon.h>
#include <ATen/EmptyTensor.h>
#include <ATen/TensorUtils.h>
#include <c10/core/CPUAllocator.h>
#include <c10/core/SymBool.h>
#include <utility>
namespace at::native {
// TODO: make all operations that resize given outputs use this fu... |
4d9b5dc623c78eb6bd045e51ac26cacc8ffb47b65b40a81594dde1e7ffbc9a08 | C/C++ | 10,399 | 346 | #pragma once
#include <ATen/core/ATen_fwd.h>
#include <ATen/core/boxing/BoxedKernel.h>
#include <ATen/core/stack.h>
#include <c10/core/DispatchKeySet.h>
#include <c10/util/TypeList.h>
#include <c10/util/intrusive_ptr.h>
#include <atomic>
#include <memory>
#include <type_traits>
namespace c10 {
using Stack = torch::j... |
5a4c28cc140f9ad6ba694518719cf1d4f63d5c271fcf65045f4c6026d07d21a9 | C/C++ | 10,401 | 291 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can ... |
b3dcbe6b9f508552cae5436e27a5eecb5a9e52e8a7291fa9dd9f8148ed166265 | C/C++ | 10,407 | 298 | #pragma once
#include <algorithm>
#include <cmath>
#include <cstdint>
#include <utility>
#include <ATen/native/GridSamplerUtils.h>
namespace at::native {
using detail::GridSamplerInterpolation;
using detail::GridSamplerPadding;
// Unnormalizes a coordinate from the -1 to +1 scale to its pixel index value,
// where... |
2399af23b9f3118c3d34feeddad5f47f5523b1a839fd847ce7f1c401c7272232 | C/C++ | 10,415 | 319 | #pragma once
#include <ATen/cpu/vec/vec_base.h>
#include <ATen/cpu/vec/vec_n.h>
namespace at::vec {
inline namespace CPU_CAPABILITY {
/**
* The `VecMask` class provides a convenient interface for working with
* vectorized masks in SIMD operations. It encapsulates a `Vectorized<T, N>`
* mask that can be directly us... |
a253e82c1960f8aa7594a51a8ac606a6235738c923f12d67a7742e88bf07ed63 | C/C++ | 10,507 | 131 | //-----------------------------------------------------------------------------
// DEAR IMGUI COMPILE-TIME OPTIONS
// Runtime options (clipboard callbacks, enabling various features, etc.) can generally be set via the ImGuiIO structure.
// You can use ImGui::SetAllocatorFunctions() before calling ImGui::CreateContext()... |
c63dd3c8cd4dbedb019ce102484edbe09d307eb9e81f28024b38aee061220844 | C/C++ | 10,580 | 437 | #ifndef __LIBGRAVIS_T_ARRAY_H__
#define __LIBGRAVIS_T_ARRAY_H__
/******************************************************************************
** Title: tArray.h
** Description: Implements a one dimensional array with reference counting.
**
** Author: Jean-Sebastien Pierrard, 2005
** Comput... |
b23559ad43713aa52ce3fa2ef8ac33043b65e210233554c504c1dc40534cec9d | C/C++ | 10,629 | 351 | #pragma once
#include <ATen/CollapseDims.h>
#include <ATen/Parallel.h>
#include <ATen/TensorUtils.h>
#include <c10/util/irange.h>
#include <cstring>
#include <limits>
namespace at {
/*
* The basic strategy for apply is as follows:
*
* 1. Starting with the outermost index, loop until we reach a dimension where
* ... |
59f76c6b495d164de510d35322d0a420751bde73a2d5e210fac0461ee42141bc | C/C++ | 10,643 | 220 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a cop... |
1b3679d1f04593490958cbba8cf656b0dbe212a57df6e30954c41dcfeac80647 | C/C++ | 10,754 | 272 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
ee7520b959c6f73284e3f585df580524550861481642c5e10caac4b07c824f79 | C/C++ | 10,792 | 379 | // Original TunableOp is from onnxruntime.
// https://github.com/microsoft/onnxruntime/blob/main/onnxruntime/core/framework/tunable.h
// https://github.com/microsoft/onnxruntime/tree/main/onnxruntime/core/providers/cuda/tunable
// Copyright (c) Microsoft Corporation.
// Licensed under the MIT license.
//
// Adapting Tu... |
2dff801d2107a07220a24a88fe0331e5638f9679e8efb9deabeb464e5b166132 | C/C++ | 10,895 | 272 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2017 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can ob... |
2898493ab200b3a7855a76db9f403eb734fabb0f86af9a8f8492cbef0d46d125 | C/C++ | 10,901 | 247 | #pragma once
#include <cstdint>
#include <memory>
#include <type_traits>
#include <ATen/core/jit_type_base.h>
#include <optional>
namespace c10 {
using DynamicTypeBits = std::uint32_t;
#define DYNAMIC_TYPE_BIT(x) (1u << x)
constexpr DynamicTypeBits kDynamicCovariantTypeBit = DYNAMIC_TYPE_BIT(31);
constexpr Dynamic... |
62592ca7ddd09898fe1ebef232e3d3b7cd17d509cf8d9b4db412c470ea10ccf4 | C/C++ | 10,953 | 280 | #pragma once
#include <ATen/core/Variadic.h>
#include <ATen/core/function_schema.h>
#include <ATen/core/jit_type.h>
#include <ATen/core/stack.h>
#include <c10/core/DispatchKeySet.h>
#include <c10/util/Bitset.h>
#include <c10/util/irange.h>
#include <cstdint>
namespace c10 {
namespace impl {
// Take a DispatchKeySet... |
5d4ed55474aa8a10aba8e6ea7a7df8ad6f14f39f84915ba3041815284daeec2f | C/C++ | 11,063 | 364 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
649980208caef4857e25009a1b38e9b9b2b592f569a17e6b84ba435692cacee0 | C/C++ | 11,074 | 447 | #ifndef TOMO_EXTRACTION_HELPER_H
#define TOMO_EXTRACTION_HELPER_H
#include <src/jaz/gravis/t3Vector.h>
#include <src/jaz/gravis/t4Matrix.h>
#include <vector>
#include <string>
#include <omp.h>
#include <src/jaz/math/fft.h>
#include <src/jaz/image/raw_image.h>
#include <src/jaz/image/interpolation.h>
#include <src/jaz... |
1d327041d5896049f25c579a1548e932878ad4291649e7690111d7d623e0e449 | C/C++ | 11,212 | 308 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2007-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If ... |
2d4bf501cd347fb690429f3e7fdad6b9e0de68492534aaa13589c3d07fb688f6 | C/C++ | 11,269 | 365 | #ifndef WAVG_KERNEL_H_
#define WAVG_KERNEL_H_
#include <vector>
#include <iostream>
#include <fstream>
#include "src/acc/cpu/cpu_settings.h"
#include "src/acc/acc_projector.h"
#include "src/acc/cpu/cpu_kernels/cpu_utils.h"
#include "src/acc/cpu/cpu_kernels/helper.h"
namespace CpuKernels
{
// sincos lookup table opt... |
286e6c8a3a43d1ef4071628b0210602ef76c7a96f9489fb90b2ebab901f3efb9 | C/C++ | 11,277 | 300 | #pragma once
#include <ATen/Tensor.h>
#include <tuple>
#include <type_traits>
#include <utility>
namespace at::functionalization {
// See Note [Functionalization Pass In Core]
enum class InverseReturnMode {
/// Specifies that functional inverses should always return a view.
AlwaysView,
/// Specifies that fun... |
7f9f6f22e6d0b51f5a9afe014546c821df8628465ddda88b278d8418c95794fa | C/C++ | 11,306 | 357 | /* Portions of this code are under:
Copyright (c) 2022 Advanced Micro Devices, Inc. All rights reserved.
*/
#ifndef HIP_UTILS_CUB_H_
#define HIP_UTILS_CUB_H_
#include <hip/hip_runtime.h>
#include "src/acc/hip/hip_settings.h"
#include "src/acc/hip/hip_mem_utils.h"
#include <stdio.h>
#include <signal.h>
#include <vec... |
258c2e9a0083be6dba4bd862e0b3a0343e2d62672afbd8ff30b77ce495eaaa57 | C/C++ | 11,320 | 286 | /*
* This file is part of Healpix_cxx.
*
* Healpix_cxx is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* Healpix_cxx is... |
4b30649d2981a7196555eebf0b40b178067227514a06cc01fbf036451a1f3bf2 | C/C++ | 11,340 | 289 | // Copyright (c) Microsoft Corporation. All rights reserved.
// Licensed under the MIT License.
#pragma once
#include <ATen/cuda/CUDAContext.h>
#include <ATen/cuda/tunable/TunableOp.h>
#include <ATen/cuda/tunable/GemmCommon.h>
#include <c10/util/StringUtil.h>
#include <fmt/printf.h>
#include <algorithm>
#include <cst... |
5d282fe78ec0b9d56b13bfe8407063901e368b47a10e56f49d385a736b1070f9 | C/C++ | 11,345 | 424 | #ifndef ACC_ML_OPTIMISER_H_
#define ACC_ML_OPTIMISER_H_
#include "src/acc/acc_ptr.h"
#ifdef ALTCPU
#include <tbb/spin_mutex.h>
#elif _SYCL_ENABLED
#include "src/acc/sycl/sycl_virtual_dev.h"
using deviceStream_t = virtualSYCL*;
#endif
/*
#ifdef ACC_DOUBLE_PRECISION
#define XFLOAT double
#else
#define XFLOAT float
#en... |
0897bbb0e850572cf20e29abf231282197c5937cace8947c02f8c63892b58a1e | C/C++ | 11,350 | 366 | #pragma once
#include <ATen/core/jit_type_base.h>
#include <ATen/core/ivalue.h>
namespace c10 {
template<class T> decltype(auto) getTypePtr();
std::string toString(const Type& type);
template<class T>
List<T>::List(c10::intrusive_ptr<c10::detail::ListImpl>&& elements)
: impl_(std::move(elements)) {}
template<class... |
ce09e7eeab75b927ae8cdb5a0d6b978c31356e185aa786ea05ff0805f37cfe7c | C/C++ | 11,398 | 193 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010-2016 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2010 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If ... |
51ffebf37f497240591986feca992f03330312097962864a3dc3ab119ecd7a10 | C/C++ | 11,425 | 434 | /***************************************************************************
*
* Author: "Jasenko Zivanov"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... |
fd129380d20e08044a48da4157924ee129d6a6ec7bdc5c39c1d2f8407194a4a2 | C/C++ | 11,443 | 347 | #pragma once
#include <ATen/cpu/vec/intrinsics.h>
#include <ATen/cpu/vec/vec256/vsx/vsx_helpers.h>
#include <ATen/cpu/vec/vec_base.h>
namespace at {
namespace vec {
// See Note [CPU_CAPABILITY namespace]
inline namespace CPU_CAPABILITY {
template <>
struct is_vec_specialized_for<int32_t> : std::bool_constant<true> {}... |
3dc1130fdc76f7676baffb72ea638935c093f4550c7ad193cf6b22a9f5563166 | C/C++ | 11,490 | 349 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
30ed50a7894b6a29d1ae4e320c5672b7c83ef923c70e4c87330bb5be5cf256bd | C/C++ | 11,492 | 456 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... |
a04017a66a7c9fa04da6934439d589e52171e93b131f1f4ea22973bbaa6f77b0 | C/C++ | 11,523 | 294 | // Copyright 2005, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
037ee2bac8f8f5a7a4ff75d3c785e3d6b8d9de1bcfb22c8f6b5745c055891af5 | C/C++ | 11,534 | 358 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2017 Kyle Macfarlan <kyle.macfarlan@gmail.com>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obt... |
89a4348bccaa42db6393640ef65bc83b818edfb9ab92d8e39a2ace4db44dbc08 | C/C++ | 11,651 | 318 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008, 2010 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, Yo... |
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