sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
001b90da41644be910dc34d9aeeb5461154e84b2be23e940e50be89740928a6e | MATLAB | 1,554 | 60 | function att = CBIG_ConvertStrCell2Attributes(str_cell, type, sequence)
% att = CBIG_ConvertStrCell2Attributes(str_cell, type, sequence)
% type can be "unique" or "single"
% if "single", then must specify "sequence_cell", e.g. {'LFT', 'AMB',
% 'RHT'}, and the corresponding att will be a N x 1 vector where LFT is set
%... |
554e5b9ec82fac1a71c86c49271bb83933c81b83b81d33f2993ba3d825dfaa53 | MATLAB | 1,554 | 47 | function [pixel_thresh,min_size,max_size,do_watershed,normalise_img, kernel, colormap] = get_biomarker_info(biomarker)
%% Define detection threshold and analysis strategyfor each antibody
% @author: speressotti
% Threshold can be between 0 and 1, with smaller values corresponding
% to higher i... |
8f51a8aea5ad88240b5dcde1dee9117154dc6ff3ebcf39a2bc415eaec5183c35 | MATLAB | 1,554 | 54 | function outpict = gcolorize(inpict,hslvec)
% OUTPICT = GCOLORIZE(INPICT,HSLVEC)
% Colorize an image in a manner replicating GIMP's 'Colorize' tool.
% I'm only including this for sake of compatibility with some GIMP scripts.
%
% INPICT is an I/IA/RGB/RGBA image of any standard image class.
% HSLVEC is a three-term... |
5a0ed3fa3202bc3144d822ba90c61178001ce22a208481a1bb360b797f2e5bc4 | MATLAB | 1,555 | 49 |
function [S,Dx,Dy]=get_stiffness_matrix_tri_wt(surf1,W)
%This finds stiffness matrix for triangular elements using techniques from
%book by Sadiku: Numerical Techniques Formulas 6.17,6.18
% A=tri_area(surf1.faces,surf1.vertices);
%
%
% f=surf1.faces;v=surf1.vertices;
%
% C11e=(1./(4.*A)).*(v(f(:,2),2)- v(f(:,3),2)... |
a740a3a71c3d0637532813cf5c96e8048485276159e3786fd4abfbb33f9869f9 | MATLAB | 1,555 | 48 | function ct = makect(colorA,colorB,varargin)
% COLORTABLE = MAKECT(COLORA,COLORB,{NUMCOLORS},{IDX})
% Create a simple linear color table from two RGB tuples
%
% COLORA, COLORB are 3-element vectors in any orientation
% Values are expected to be scaled according to the numeric class.
% NUMCOLORS specifies the l... |
7d33030e7f596ad660faef68cd8d7699b8bcda31551d37718b8242d1770e1abd | MATLAB | 1,557 | 50 | function[root, resultdir, subdir, behaviordir, fMRIScansDir] = setDir(subid, IRM)
% setDir
% function which creates different results folders.
% INPUTS:
% subid: string indicating subject number
% IRM: indicate whether fMRI run (1) or not (0)
% If yes, also creates a folder to store fMRI data
%
% OUPUT
% root: folder f... |
9bcf45117c39ddea3e39b9944d1dd00a347615bcf9bea51c5d88e00b9a3b69f8 | MATLAB | 1,558 | 70 | function [h,readwith]=nt_read_header(fname)
%[h,readwith]=nt_read_header(fname,flag) - read data from file
%
% h: header
% readwith: fieldtrip or biosemi
%
% fname: file to read
%
%
if nargin < 1 ; error('!'); end
if ~isa(fname, 'char');
error('filename is not char string');
end
[PATHSTR,NAME,EXT] = filepa... |
1963f9bba1203d217c596a58a92163ee9b9e585b09c9794fef38a483e0a88444 | MATLAB | 1,562 | 56 | % compare run/rest between discrimination and grouping
mouseID= [ "M119" "M120" "M292" "M319" "M231" "M314" "M316" "M318"];
RestRatio = zeros(length(mouseID),2);
medianSpeed = zeros(length(mouseID),2);
for i =1:length(mouseID)
load(strcat("G:\Decoder input\",mouseID(i),"\trained\CaActivity.mat"), "States... |
e9c665530dacb1b10df4b727607db5c20e1e0c69a76cec6ee4a5d36dc5de8429 | MATLAB | 1,562 | 63 | clear all;close all;clc;
restoredefaultpath;
addpath('/ImagePTE1/ajoshi/code_farm/svreg/src');
addpath('/ImagePTE1/ajoshi/code_farm/svreg/3rdParty/')
figure;
mysphere([0,0,0],100,[.5,.5,.5],100);
hold on;axis equal;material dull;camlight;
cml=jet(125);
r =100;
phi=.3*rand(125,1);
theta=2*pi*rand(125,1);
%[phi,theta... |
dd556f8bd9e030b5f8b953c16c509c4469fe73b6f430cb2cb5b956b26ca7e909 | MATLAB | 1,563 | 54 | function s = motionEval(v, ref)
% calculates structural similarity measure between reference volume and
% all volumes in 4D time series data.
% required input: v = fname or nifti file structure
% ref = reference volume, volume# or 'mid'
% author: soyoung choi USC
if isstruct(v)
vls = v;
el... |
11a396327ec27b2e5302fef77bf24b20b9ee3244f2e1ecc2cd2eaeaf7c7c3569 | MATLAB | 1,567 | 28 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Install GraFT %%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%... |
9c21ada6a067c21daad793c164fcdd38945fe2d91d6e68ca036a18340dae03f1 | MATLAB | 1,569 | 51 | function CBIG_UpsampleVolume(input, output, scales, interp_type)
% Upsample a volume.
%
% CBIG_UpsampleVolume(input, output, scales, interp_type)
% Input:
% input : input nifti file
% output : output nifti file
% scales : scales = FS_vox (order as seen on freeview)
% interp... |
c1b489f47273b4ae539dd0203ed59ae4865e73364a43e4b447b3cce094d04fc9 | MATLAB | 1,569 | 48 | function S = reCalcCoefWithLS(data, D, S, nonneg)
% S = recalcCoefWithLS(data, D, S)
%
%
%
% 202 - Adam Charles
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
S_on = abs(S)>10*eps; % Compute the support of all pixels
classS = class(S);
if ndims(S)==3
nPix = size(S,1)*size(S,2); % g... |
998429452728b7d540e6faca77c0394e0bc2a0be995b2d0e183e2cd81ffed525 | MATLAB | 1,572 | 45 | %% function to analyze whether reward tuned HDC/PCs have place field nearby reward
function [HasRewardField, RewDist] = AnalyzeFieldHDCPC(IsRewardTuned, cellID, Field_tbl, LightBin, RewBin)
[~,ia,~] = intersect(RewBin,LightBin);
HasRewardField = nan(length(cellID),1);
RewDist = nan(length(cellID),1);
for i = 1... |
d825a28c8fa1c29b99a11caa494bddd3c121355d40350491dfa5ccc5c1a52545 | MATLAB | 1,582 | 38 | function [cfg,data] = dtx_correctDTX2name(cfg,data)
% Error during acquisition for rat DTX2 : need to rename channels ECoGS1 to
% ECoGM1G and ECoGM1 to ECoGM1D.
if strcmp(cfg.prefix,'DTX2-')
fprintf('Rat DTX2, correct cfg and LFP channel names\n');
for ipart = 1:length(data)
for markername = string(fie... |
a63c17364e199f4a0d968fa916a34b3ceafa98aa2f1483dc0de3e93ddf39bcd5 | MATLAB | 1,583 | 56 | load("error_stat_Nmax_Nconfigs_Strength.mat");
error_stat = log10(error_stat);
% axis Nmax alpha phi3 phi4 type(mean,std)
ncolor = 10000;
color1 = [255, 150, 150]/255;
color2 = [150, 150, 255]/255;
anticolor1 = [1,1,1]-color1;
anticolor2 = [1,1,1]-color2;
colors1 = ones(ncolor,1)*color1 + linspace(1,0,ncolor)'*anticolo... |
67a3bcb1a0916ce73d49d26775f5864ae5f45cc4c24973c073f854d516dc699c | MATLAB | 1,584 | 50 |
% The purpose of this file is to generate a file that gives a vector of
% grayordinate labels, its id lookup tables
clc;clear all;close all;restoredefaultpath;
addpath(genpath('/ImagePTE1/ajoshi/code_farm/bfp/dev/gifti-1.6'));
addpath(genpath('/ImagePTE1/ajoshi/code_farm/bfp/src'));
%addpath(genpath('/ImagePTE1/ajoshi... |
a93524e866b24c14f9f7d49ebf4a64febc6eafa7dc779bdf5b25625101ac14a7 | MATLAB | 1,584 | 42 | function cpm_savefig(fig, fname)
% % cpm_savefig, wrapper for better saving of functions. Using different
% setting for pdf and png.
%
% fig - figure handle
% fname - output name
%
% ---------------------------------------------------------------------
% Copyright (C) 2023 Simon R. Stein... |
9b7fb4ac7e97ac9164a56a2752ea537c6f997e6859872dcac3f0b9d360efb93e | MATLAB | 1,586 | 62 | function hArrow = carrow3(axs, p1, p2, color, lineWidth, shrinkage, varargin)
%% Default arguments
if isempty(axs)
axs = gca;
end
if ~exist('color', 'var')
color = [];
end
if ~exist('lineWidth', 'var')
lineWidth = [];
end
if ~exist('shrinkage', 'var')
shri... |
a1a209768bb67dfc85c29bf4255661a2e6fcc26d182a8237d89f15e8fa75bee4 | MATLAB | 1,586 | 39 | function [config] = wod_setparams_lfp
disp('setting parameters');
if ismac
error('Platform not supported')
elseif isunix %CED library does not work on unix
% rootpath_analysis = '/network/lustre/iss01/charpier/analyses/wod';
% rootpath_data = '/network/lustre/iss01/charpier/raw/rat-iso/DATA_Antoin... |
477e8939e6f48db656db754e5e1842512a4c0759456e741b9edac70cce527535 | MATLAB | 1,587 | 60 | function val = CBIG_ComputeMultipeTestingPermutationStudentTPval(vec1, vec2, one_sample, N, alpha)
% One or two sample t-test via permutation.
%
% val = CBIG_ComputeMultipeTestingPermutationStudentTPval(vec1, vec2, one_sample, N, alpha)
% Input:
% vec1 : M1 x T where M is number of subjects and T i... |
f4c42657306a27d1b33006a8807c2c73cdce04e218ac764ef4db4c45fe05b057 | MATLAB | 1,587 | 36 | function S = singlePoiNeuroInfer(tau_vec, mov_vec, D, maxiter, tolerance, verbose)
% S = singlePoiNeuroInfer(tau_vec, mov_vec, D, maxiter, tolerance, verbose)
%
% Use SpiralTAP for a single vector
%
% 2018 - Adam Charles
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Set up problem
... |
6d8f9eb1be26cec98e2ab0d825bc2a2aaca50e5c009a34524c46442ad262dc63 | MATLAB | 1,588 | 41 | function [y, x] = cpm_predict(prf, idx, from_posterior)
% % cpm_predict, helper function, predicts signal from prf for given voxel.
%
% prf - a prf structure
% idx - [optional, default=1] voxel index from which parameters should be
% predicted
% from_posterior [optional, default=true] wh... |
be66c61197a0c6ca67b8d0ad2021e1b27f4d5e1f493eb56e18e2281c338ce9f8 | MATLAB | 1,593 | 56 | function out = flipd(varargin)
% OUT=FLIPD(A,{DIM})
% Flip an array. This is a wrapper for flip() and flipdim() to provide a consistent
% syntax across versions with the speed benefit of flip() where it's available.
%
% flip() is ~2-3x as fast as flipdim() for large arrays, but it's only available
% post-R... |
440061db79eb9a9d8f7d2b479e5730c0d742ddc44f7444df3945eb7aeb58f4d5 | MATLAB | 1,595 | 57 | function y=nt_deboing(x,events)
%y=nt_deboing(x,events) - fit, remove ringing associated with events
%
% y: clean data
%
% x: data to clean
% events: list of event samples
%
% NoiseTools.
nt_greetings;
if nargin<2; error('!'); end
if size(x,2)>1;
error('x should be column vector');
end
ORDER=10; % order of ... |
a1f9aef8fc6dd06ea97030730bf9715849efb3ae4d743c14a13cedd92683e284 | MATLAB | 1,596 | 57 | % Sets axis tick labels
function varargout = ticklabels(axs, labels, xOrYticks, indices, varargin)
%% Default arguments
if isempty(axs)
axs = gca;
elseif nargin < 4 && iscellstr(axs)
%% Alternate input format: ticklabels(labels, xOrYticks, [indices])
if nargin > 2
indice... |
54ea8d7d1f1954c49be249760e979ad5081c59f3ae0e95b31404ad7a3595e8cb | MATLAB | 1,597 | 47 | % Matlab codes for computing link predictability of complex networks.
% Journal reference:"Toward link predictability of complex networks",
% Proceedings of the National Academy of Sciences, 201424644 (2015).
% by Linyuan L¨¹, Liming Pan, Tao Zhou, Yi-Cheng Zhang and H. Eugene Stanley.
% http://www.pnas.org/content/ea... |
7e5fb66e66a3daf09c4f3b94937daab87bb2b1f5180cea4a9a0ef328c0a55324 | MATLAB | 1,598 | 48 | %
% BDP BrainSuite Diffusion Pipeline
%
% Copyright (C) 2019 The Regents of the University of California and
% the University of Southern California
%
% Created by Chitresh Bhushan, Divya Varadarajan, Justin P. Haldar, Anand A. Joshi,
% David W. Shattuck, and Richard M. Leahy
%
% This program is free sof... |
64e52ae3ed84c5eab0b24f2a81b940b99ea9ef94be695c0e16a2dad1508917c8 | MATLAB | 1,600 | 42 | %% Convert digits to ordinal format: '1st', '2nd', ... etc. Non-numeric inputs will be included as prefix/postfix.
function name = num2ordinal(varargin)
%% Locate the numbers to convert
iNumber = find(cellfun(@isnumeric, varargin), 1);
if isempty(iNumber)
error('At least one of the inputs must be a... |
c1df2f0a2c87023f376451c040e4d263bb522aabf40ac9c98852e08ce32ac4e1 | MATLAB | 1,602 | 44 | %% function to detect peaks on deconvolved calcium traces
% simple findpeaks for non-drifting cells
% thresholded detection for threshold needed cells
% 0s for drifting cells
%% Gergely Tarcsay, 2024. Function to detect Ca events using the deconvolved calcium signal.
% 1. Drifting cells are kept 0
% 2. For ... |
6416b9390341e82d2eaf6867053d219e0fe5fc0cd4649dd00d1e9d3a9bfba923 | MATLAB | 1,605 | 42 | function bias_bits = bias_mi_gd_bits(Xdim, Ntrl, bincount)
%BIAS_MI_GD_BITS Analytic bias correction for Gaussian/discrete MI.
% bias_bits = bias_mi_gd_bits(Xdim, Ntrl, bincount) returns the
% scalar bias correction in bits for the model-based MI estimator between an
% Xdim-dimensional Gaussian variable and a dis... |
228c4072ac19ba681a2906318734a51972d06acea16b36435fbfec876182ff27 | MATLAB | 1,609 | 35 | function checkVars = isInMatFile(fileName, varName)
% isInMatFile(fileName, varName)
%
% Chech if a variable called "varName", or list of variables as a cell
% array of variable names in 'varName' exist in the file "fileName"
%
% 2018 - Adam Charles
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%... |
0088e2a0f0379364d287c7aa6380df1b025b07140e9ade1d68fa32a330c8ae19 | MATLAB | 1,610 | 75 | %
% Copyright (c) 2015, Yarpiz (www.yarpiz.com)
% All rights reserved. Please read the "license.txt" for license terms.
%
% Project Code: YPML110
% Project Title: Implementation of DBSCAN Clustering in MATLAB
% Publisher: Yarpiz (www.yarpiz.com)
%
% Developer: S. Mostapha Kalami Heris (Member of Yarpiz Team)
%
% Cont... |
636a938e7e5997b124389e0d44a32b9260ba0c7667ff7dc31965a660cb9c20cf | MATLAB | 1,610 | 50 |
% The purpose of this file is to generate a file that gives a vector of
% grayordinate labels, its id lookup tables
clc;clear all;close all;restoredefaultpath;
addpath(genpath('/ImagePTE1/ajoshi/code_farm/bfp/dev/gifti-1.6'));
addpath(genpath('/ImagePTE1/ajoshi/code_farm/bfp/src'));
%addpath(genpath('/ImagePTE1/ajoshi... |
05574a0859692184c230ab8f8806b5965a7fb7336a6f6f4bc5a4f9293975473c | MATLAB | 1,613 | 62 | function [tosquares,D]=nt_quad2square(toquad,order)
%[tosquare,D]=nt_quad2square(toquad,order) - quadratic to squared linear component
%
% tosquares: matrix to linear components with closest square
% D: scores
%
% toquad: matrix that defines quadratic component from cross products
% order: order of cross produ... |
166eea9b79dde08a253d4147cecba88f93b34659416a90b13f31f801690ceec3 | MATLAB | 1,614 | 59 | function a = groupLCA(y, A, lambda, group_cell, varargin)
% a = solve_grouplasso_lca(y, A, lambda, group_cell, tol)
%
% Block l1 minimization (group lasso) function. Uses LCA to optimize.
%
% y - vector to infer decomposition
% A - sparsity matrix (generative mode: y = A*a)
% lambda - regulariz... |
665430a8837742d641e09ec28f27e8eaab3ad4fc147496ec9ff8bcbd4f25a3b7 | MATLAB | 1,616 | 62 | function [labels labelcount] = bwlabelFB(varargin)
% LABELS=BWLABELFB(INPICT,{CONN})
% [LABELS LABELCOUNT]=BWLABELFB(INPICT,{CONN})
% Connected group labeling for binary images. Labels a binary image based on
% user-specified connectivity.
%
% This is a passthrough to the IPT function bwlabel(), with an ex... |
36afc789718cea3f58d1e9a39786d1c701c44ad7a6021e38b15cccfdafe66273 | MATLAB | 1,619 | 32 | % OME Bio-Formats package for reading and converting biological file formats.
%
% Copyright (C) 2014 - 2021 Open Microscopy Environment:
% - Board of Regents of the University of Wisconsin-Madison
% - Glencoe Software, Inc.
% - University of Dundee
%
% Redistribution and use in source and binary forms, with or wi... |
85227d038d8e5d750429ea4ef58b80f61512cca919203da1a17e65711e27ef81 | MATLAB | 1,629 | 47 | %
% BDP BrainSuite Diffusion Pipeline
%
% Copyright (C) 2019 The Regents of the University of California and
% the University of Southern California
%
% Created by Chitresh Bhushan, Divya Varadarajan, Justin P. Haldar, Anand A. Joshi,
% David W. Shattuck, and Richard M. Leahy
%
% This program is free sof... |
7010431133d3c9feb08e57b497dc44adb37d92fdda5caa1a5e1c4c98bbaa4a42 | MATLAB | 1,632 | 37 | function LFP = dtx_readLFP(cfg, MuseStruct, force)
%read LFP data, remove artefacted trials, flip if required, correct
%baseline, and align interictal data to the following TDW
%used in dtx_spikes_project
LFP = readLFP(cfg, MuseStruct, force);
LFP = removeArtefactedTrials(cfg, LFP);
if ~isempty(LFP)
for ipart = ... |
ac719bb98e6cec92557adadd6cc5054a1140dd38ed59e07d21086174fd820bce | MATLAB | 1,634 | 39 | % SVReg: Surface-Constrained Volumetric Registration
% Copyright (C) 2017 The Regents of the University of California and the University of Southern California
% Created by Anand A. Joshi, Chitresh Bhushan, David W. Shattuck, Richard M. Leahy
%
% This program is free software; you can redistribute it and/or
% modify ... |
d4cc1099f83c7daacd5367c4deeded83647debff4b8500492aef56149c9c04e5 | MATLAB | 1,634 | 37 | %% Gergely Tarcsay, 2024. Function to split session into 1st and 2nd half trials, even and odd trials for each context
function [frames, labels] = SplitSession(TrialFrames, States)
% get trial # for each context
CtxtOfTrial = States.Context(TrialFrames(:,2)); % get context for each trial; trial 1 is not assigned
... |
353bd302ee749c1c52963797cce724c12dd48de415b2ef52ca4e51356f858d09 | MATLAB | 1,635 | 42 | function katia_prepare_spykingcircus
restoredefaultpath
if ispc
addpath (genpath('\\l2export\iss02.charpier\analyses\vn_pet\EpiCode\shared'))
addpath (genpath('\\l2export\iss02.charpier\analyses\vn_pet\EpiCode\external'))
addpath (genpath('\\l2export\iss02.charpier\analyses\vn_pet\EpiCode\templates'))
... |
744fcd0ef45580d66c180a209dc3f96993abc8670199bdbee0205f03359d5c94 | MATLAB | 1,635 | 59 | % SVReg: Surface-Constrained Volumetric Registration
% Copyright (C) 2016 The Regents of the University of California and the University of Southern California
% Created by Anand A. Joshi, Chitresh Bhushan, David W. Shattuck, Richard M. Leahy
%
% This program is free software; you can redistribute it and/or
% modify ... |
0c98b0de55673ee95c911dd1e540775d33f4cbf8cb0b18929540e0a4c2174661 | MATLAB | 1,638 | 66 | function Q = randomPowerFindRange(A, r, q, epsilon, randMatrix)
%% Default arguments
if nargin < 2 || isempty(r)
r = 10;
end
if nargin < 3 || isempty(q)
q = 1;
end
if nargin < 4 || isempty(epsilon)
epsilon = 1e-5;
end
if nargin < 5
randMatrix = []... |
6b280a5bfa9c5c3d182fa3d50a235c49c20fd47075c219e0542e39be73d729ba | MATLAB | 1,640 | 45 | % Verify NIFTI header extension to make sure that each extension section
% must be an integer multiple of 16 byte long that includes the first 8
% bytes of esize and ecode. If the length of extension section is not the
% above mentioned case, edata should be padded with all 0.
%
% Usage: [ext, esize_total] = verif... |
7287d0e17bd1a4f7787ec984fab6541c41386a88c3e88a70a2e238cb6fd5201e | MATLAB | 1,641 | 61 | function [iBad,toGood]=nt_find_bad_channels(x,proportion,thresh1,thresh2,thresh3)
%[iBad,toGood]=nt_find_bad_channels(x,proportion,thresh1,thresh2,thresh3) - find bad channels
%
% iBad: indices of bad channels
% toGood: matrix to good channels
%
% x: data
% proportion: proportion of time above threshold(s) [def... |
84aebdcf98bd477a17a5a149cc57966fe44a2999d56e58a590f0cc33dff8c765 | MATLAB | 1,643 | 34 |
%% Create slurm job list
config = pnh_setparams;
fname_slurm_joblist = fullfile(config{1}.datasavedir, 'slurm_job_list.txt');
delete(fname_slurm_joblist);
for ipatient = 1:4
for ipart = 1 : size(config{ipatient}.directorylist, 2)
subjdir = config{ipatient}.prefix(1:end-1);
partdir = ['p', ... |
296e4e91374a6c4d3ea57e50cef56ffadc391c77c724209edc8e89f611b434ce | MATLAB | 1,644 | 57 | function Xcorr = fastXcorr(spike_matrix, maxLag, autocorr)
%% by Mattia
%% compute cross correlation for sparse binary matrices (orders of magnitude faster than matlab xcorr)
% inputs:
% spike_matrix: units * time
% maxLag: the maximum lag for which xcorr will be computed. in the same
% units as the spike_matrix
% au... |
a23dc3a7f5b7feb205ce323efa8ee20b61ab25644e0f52b68117e45383e0c600 | MATLAB | 1,645 | 52 | classdef PCAResults
properties
coeff
score
latent
tsquared
explained
mu
end
methods
function obj = PCAResults(XMatrix)
[coeff,score,latent,tsquared,explained,mu] = pca(XMatrix);
obj.coeff = coeff;
obj.score = sc... |
902af71f1b420cd15c45a6a46383395b6723d1efe50f4eb0e7cba41b6038d90e | MATLAB | 1,646 | 60 | %% Compute the variance of a weighted sample.
% Input:
% unbiasing : 'none', 'frequency' (default), or 'reliability'
function [variance, mean] = varw(data, weight, unbiasing, dim, nanflag)
%% Default arguments
if ~ischar(unbiasing)
if exist('dim','var')
nanflag = dim;
end
dim ... |
e15074a9fc3756b517cf785e246ad5625cc1c0933760a5536419166d120d0d42 | MATLAB | 1,648 | 52 | classdef ConnectionMatrix < handle
% ConnectionMatrix
% Handles pure connection matrix (source x target) without any metadata.
properties
Matrix double % [N_source x N_target] connection matrix (binary or weighted)
IndexPairList double % [#connections x 2] (optional) source-t... |
17eca62ae7ae73dc0ec5487dd8f11e6368a82a0b1eab8a0737df422b3678de51 | MATLAB | 1,649 | 40 | function [] = arrowProjection(tail, direction, dimensions, scale, color, varargin)
% ARROWPROJECTION Draws a 3D arrow projected to 2D, with special
% notation for into plane and out of plane.
i = dimensions(1);
j = dimensions(2);
xRange = span(xlim());
yRange ... |
541029ca2d492c91b5ad586b02f980b3b3798d28d4080c3e2f01a512c77c7885 | MATLAB | 1,649 | 48 | classdef Socket < handle
properties (Access = private)
sock
end
properties (Access = private, Constant)
sizes = containers.Map( ...
{'int8', 'uint8', 'int16', 'uint16', 'int32', 'uint32', ...
'int64', 'uint64', 'single', 'double'}, ...
[1, 1, 2, 2, ... |
9c8dea31513baef4ad08b4ceb9a4678d40de722d1911e7b4bec70af8bb4a39eb | MATLAB | 1,651 | 47 | %% Generate a random permutation of indices [1,2,...,n] where the indices are first partitioned into segments and then segments are permuted
function r = randpermSegments(n, nSegments, minSegment, nSamples)
%% Default arguments
if nargin < 3 || isempty(minSegment)
minSegment = 1;
end
if nargin < 4 ... |
b105d008417a697885dc8c39fd90f3db7b6c61a16687a8d54877349d50a0bfe2 | MATLAB | 1,651 | 44 | function [true_P] = cpm_get_true_parameters(varargin)
% % cpm_get_true_parameters, transform parameters in PRF.Ep or arbitrary parameters
% from latent into real parameter space.
%
% true_P = cpm_get_true_parameters(PRF, idx) transforms posterior parameter
% estimates for vox... |
ef64172f84842973f14e0eb39c63e7eec106886d976cc4ab30a7f5b09088f489 | MATLAB | 1,652 | 48 | function avg_mesh = CBIG_ReadNCAvgMesh(hemi, mesh_name, surf_type, label)
% Read the average mesh (from FREESURFER) of normal control people.
%
% avg_mesh = CBIG_ReadNCAvgMesh(hemi, mesh_name, surf_type, label)
% Input:
% hemi : 'lh' or 'rh'
% mesh_name : 'fsaverage6', 'fsaverage5', 'fsaverag... |
b9bf18479e954278e9a27db0cc5584b4df84b899e53d92ed5fb2286f47b0109d | MATLAB | 1,656 | 40 | %% function to create event map for every cell
function [RateMap, EventXY, EventTime, OccupancyMap] = MakeRateMap(BinnedXY, CaMatrix, XYedges, frames, framerate, filterSize)
[N_cell,~] = size(CaMatrix);
BinEdges = length(XYedges(:,1));
%% make occupancy map
[OccupancyMap, ~,~] = histcounts2(BinnedXY(frames,2),... |
d86dc7108f3a4e2328a89756fab8a5eb03c8ca7de6b272bbb19180fddd2bfe43 | MATLAB | 1,658 | 34 | %% Demo 8 - Generalized linear mixed model with gamma distribution
% Strictly positive, right-skewed outcomes can be modelled directly with a
% distribution that fits, instead of being forced into a normal model. Shown on
% the Oats dataset (nlme; Yates 1935), a split-plot field trial: oat yield for
% three varieties u... |
8b6acccb0a36a20c39226cd30ceec8837e5cb8cb523f206c61651f3854100c5d | MATLAB | 1,659 | 53 | function [outflag color] = issolidcolor(inpict,tol)
% OUTFLAG=ISSOLIDCOLOR(INPICT,{TOLERANCE})
% [OUTFLAG COLOR]=ISSOLIDCOLOR(INPICT,{TOLERANCE})
% Determine whether an image consists of a uniform color with
% uniform alpha (when present). If the image is uniform,
% optionally return its color tuple.
%
% ... |
5366f976ed7b7004329182eedc9d6af0c54bcb55164e117153ad91fdd515bd3c | MATLAB | 1,660 | 53 | function ftdata = jw_import_neuralynx(sessionDir, varargin)
% JW_IMPORT_NEURALYNX imports a set of Neuralynx continuous channel files
% (ncs) and imports them into a fieldtrip structure after preprocessing.
%
% Author: Jeffrey B. Wang <Jeffrey.Bond.Wang@gmail.com>
%
% Inputs:
% sessionDir: Directory for w... |
a924de1741d4b638b04f17ed4f41ce1fbe8fdfe60f5096b8347dacc8780448c4 | MATLAB | 1,662 | 47 | function [mean_angle,std_angle, Dist_along_PF, term_ang]=find_angle_vs_position(dA2,dL0,dL,maxk2,Lstep, term_bin)
J=length(maxk2);
for j=1:J
Lfromwall(1,j)=dL0(j);
Lfromtip(1,j)=dL0(j);
for k=2:maxk2(j)
Lfromwall(k,j)=Lfromwall(k-1,j)+dL(k-1,j);
Lfromtip(k,j)=Lfromtip(k-1,j)+dL(ma... |
7e1bf4e55c85a2753837105608f100e76b7dd0f4b77459ba63136861f8d6fab4 | MATLAB | 1,663 | 79 | function [topcs,pwr,y]=nt_pca0(x,shifts,nkeep,threshold,w)
%[topcs,pwr,y]=nt_pca0(x,shifts,nkeep,threshold,w) - time-shift pca
%
% topcs: matrix to convert data to PCs
% pwr: power per PC
% y: PCs
%
% x: data matrix
% shifts: array of shifts to apply
% nkeep: number of PCs to keep
% w: weight (see nt_cov)
% thr... |
c326d431ccab4a40a131e5607c0b03dedf19b185b642ffe46bd51692c101f23f | MATLAB | 1,664 | 47 | % Load figures invisibly
fig1 = openfig('./../figures/ast1.fig', 'invisible');
fig2 = openfig('./../figures/ast2.fig', 'invisible');
fig3 = openfig('./../figures/ast3.fig', 'invisible');
% Create new figure for merging
mergedFig = figure;
hold on
axis([0 1 0 1]); % Set both x and y axes to [0,1]
% Find axes in each ... |
2daefe1838687d20d95fa93ecb697eb2ea44db972c37623b9d9afbde8e257a14 | MATLAB | 1,667 | 61 | function writer = write_image_array()
writer.accepts = @(item) isa(item, 'gadgetron.types.ImageArray');
writer.write = @write_image_array_to_socket;
end
function write_image_array_to_socket(socket, image_array)
write(socket, gadgetron.Constants.IMAGE_ARRAY);
write_data(socket, image_array.data);
... |
4b3d281d069591731eb0557c22a950c792dc262bd7eb3d9bcb1ebc4d171c54be | MATLAB | 1,667 | 65 | function BMtraining(subjectname, runnum)
%e.g., BMtraining('TEST', 1, 1)
% 12 mini blocks per run, (see below) each consisting of four main block
% types repeated 3 times. Must run both run types to acquire complete set.
%runtypes: 1 IdealCutting/BMLscramble x Upright/Inverted
% 2 BMLscramble/Modified... |
6ceff1a9027c5940b41a57798b5c990d00512b22ec1c812bd4b8bc2ecd8aad45 | MATLAB | 1,671 | 50 | function [ savedFileName] = save_nii_gz( niiData, fileName, datatype )
% Wrapper around save_nii to create compressed GNU zip files. Only works
% with nii structures.
%
% niiData: nii structure or .nii filename with full path.
%
% fileName: Destination filename, with/without '.nii' or '.nii.gz'.
% Use [... |
45334627121fd5c09423cbdcb17d9565041ec083169c66322bcc964e1315b9cd | MATLAB | 1,672 | 57 | close all; clear all; clc
addpath(genpath('/data/code/matlab'));
prepOutput;
%%%% PARAMS %%%%
dataDir = '/data/coord/tyr/15-07-13';
% Go to directory
initPath = path;
initDir = pwd;
cd(dataDir);
% Clear temp files and run grab to generate them (run d-files)
delete('*.temp');
grabCall = 'grab -od -at2 -Xs62:66 -mc ... |
48d42cb10740a1d1243585e0df28c98c3e1518b3febd874ae4545b72430adb04 | MATLAB | 1,673 | 50 | % Finding Indices
% Always Sel_ind = find(HC_ind | OCD_ind)
% Late onset OCD
HC_ind = (demographics.Diag == 2) & (demographics.Age >= 18) & (isnan(demographics.Onset));
OCD_ind = (demographics.Diag == 1) & (demographics.Onset == 2) & (demographics.Age >= 18);
% Number of HC: 663; Number of OCD: 388
% p=0.0005
% Earl... |
3edcd35a2f4283e27c7a2e3fc586453b8484a6a9d1dc294c713de3e2dda65d48 | MATLAB | 1,675 | 59 | function [C,tw,m]=nt_cov_lags(x,y,shifts,demeanflag)
%[C,tw,m]=nt_cov_lags(x,y,shifts,nodemeanflag) - covariance of [x,y] with lags
%
% C: covariance matrix (3D if length(lags)>1)
% tw: total weight
% m: number of columns in x
%
% x,y: data matrices
% shifts: positive shift means y is delayed relative to x
% de... |
53126eae4da4010a942d7f0fce20ec5e2db43796694d0d3356984180ceafbd60 | MATLAB | 1,676 | 53 | function CBIG_DownsampleDataFSaverage(hemi, input_file, input_mesh_file, output_mesh_file, output_file, var_name, exit_flag)
% CBIG_DownsampleDataFSaverage(hemi, input_file, input_mesh_file, output_mesh_file, output_file, var_name, exit_flag)
% CBIG_DownsampleDataFSaverage('lh', './lh.090722_ZC47CH.014.resid.mgz', 'fs... |
ca68b15b75fcf0a23bd3281c3a245bcd7a99e11331ba2262a0b5aee5a44abb47 | MATLAB | 1,680 | 61 | function [squares,quads,D]=nt_qca(x,npcs,nsmooth,nquads)
%[squares,quads,D]=nt_qca(x,npcs,nsmooth,nquads) - maximize induced power using quadratic component analysis
%
% squares: linear components closest to most repeatable quadratic component
% quads: most reproducible quadratic component(s)
% D: eigenvalues
%
% ... |
e248a64fdc5d7d371b265e39a28ffdfbf1905239051c9e474b562b759a717225 | MATLAB | 1,680 | 51 | % position = [left bottom width height]
function [figHandle, position] = makePositionedFigure(position, monitor, positionMode, doCreate, varargin)
% Default arguments
if nargin < 2 || isempty(monitor)
monitor = getMonitorBySize(true);
end
if nargin < 3 || isempty(positionMode)
positio... |
624e6964544a8ecefb051a617fe0896f2360678d197dd101cf3872e7a452bf10 | MATLAB | 1,683 | 44 | %% function to get reference point, Gergely Tarcsay, 2025.
% First the position is rotated based on difference of the expected and
% observed position of the mouse when at getting the reward (head position)
% Next the reference point is taken as [0 20] - northern corner
function [RefPoint,XY, theta, Rew] =GetRefere... |
15e47cedd848fb16b948adf29993fcad855196fbc3c560b38de5d7d3c7abf0f9 | MATLAB | 1,689 | 42 |
% This is a sample main file that reads two grayordinate fmri files generated by bfp and outputs the synced files.
clc;clear all;close all;
addpath(genpath('/home/ajoshi/coding_ground/svreg'));
addpath(genpath('../'));
sl=readdfs('/home/ajoshi/coding_ground/bfp/supp_data/bci32kleft.dfs');
sr=readdfs('/home/ajoshi/co... |
20fec097d3b1bd009167e5e8dab61bf29c0a1d15894eeb2b49db1f510e575868 | MATLAB | 1,692 | 42 | function PET_prepare_spykingcircus
restoredefaultpath
if ispc
addpath (genpath('\\l2export\iss02.charpier\analyses\vn_pet\EpiCode\shared'))
addpath (genpath('\\l2export\iss02.charpier\analyses\vn_pet\EpiCode\external'))
addpath (genpath('\\l2export\iss02.charpier\analyses\vn_pet\EpiCode\templates'))
ad... |
9df58336d74db19e5faa804afa2d164134a68f3d7cdbf83e546afb6872aad02b | MATLAB | 1,694 | 47 | function CBIG_SPGrad_example_wrapper(output_dir)
% CBIG_SPGrad_example_wrapper(output_dir)
%
% This function will run examples sequentially
%
% Written by Ru(by) Kong and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
if(~exist(output_dir))
mkdir(output_dir);
else
rmdir... |
4e2224f7287ecbacb208b4ead5fc24135d8d60a393b1b927e80bef49037505a8 | MATLAB | 1,696 | 65 | function [B, lims] = rescale(A, lims, out_lims)
%RESCALE Linearly rescale values in an array
%
% Examples:
% B = rescale(A)
% B = rescale(A, lims)
% B = rescale(A, lims, out_lims)
% [B lims] = rescale(A)
%
% Linearly rescales values in an array, saturating values outside limits.
%
% IN:
% A - Inp... |
fb94b2b05b5d84f8b37262988a5ff146639da79ed6095f02bc45cbc94863de8b | MATLAB | 1,696 | 37 | function sbjMesh = CBIG_SPGrad_read_surf_mesh(surf_path)
% This function reads a surface mesh from a surface file
% Written by Ru(by) Kong and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
radius = 100;
total_surface_area = 4*pi*(radius^2);
[vertices, faces] = read_surf(surf_pat... |
7d08f9f28684123d986785f9ecbaf0e6bef8d66df290293acdabc34e6e2ab555 | MATLAB | 1,700 | 53 | % putRawCSC.m
% demo on how to use Mat2NlxCSC
%
%
% example:
% putRawCSC( filenameOut, timestamps, dataSamples, ['Test header info'] );
% where timestamps and dataSamples are as returned by:
% [timestamps,dataSamples] = getRawCSCData( filename, fromInd, toInd, mode );
%
%urut/MPI/dec11
%urut/feb13 added exporting Fs/va... |
ae6431cfcae44840140bbf2f6ffd4dcaedac0d3ab507b61aef71ba9507dc4303 | MATLAB | 1,702 | 52 | %
% BDP BrainSuite Diffusion Pipeline
%
% Copyright (C) 2019 The Regents of the University of California and
% the University of Southern California
%
% Created by Chitresh Bhushan, Divya Varadarajan, Justin P. Haldar, Anand A. Joshi,
% David W. Shattuck, and Richard M. Leahy
%
% This program is free sof... |
d59be8a48010b7bc5530fb78b1b7d04a30373ea889a128df5a46f38e96fbca74 | MATLAB | 1,702 | 50 | function smoothedV = CBIG_Smooth3DVolumeWithMasks(V, mask, outside_mask_type, method, filter_size, arg)
% smoothedV = CBIG_Smooth3DVolumeWithMasks(V, mask, outside_mask_type, method, filter_size, arg)
% outside_mask_type = SMOOTH => Everything outside the mask is smoothed ignoring the mask.
% outside_mask_type = SAME ... |
1000e1142ef7a33fa093b1809b3e1d9a49686b89fc498b09740de9619ab1c5b0 | MATLAB | 1,703 | 53 | function [spectrum, freq] = medianSpectrum(signal, windowSize, overlap, nfft, fs, maxFreq)
%% Calculate median power spectrum using matlab pwelch on single windows
% By Mattia
% This function replaces the last step of welch's method (mean) with
% a median. If you are unsure why this is preferrable t... |
18007ba6cfcca6014e39cff975bf1cc9913a5c151e0f4aa24cf82331d9daf41d | MATLAB | 1,704 | 54 | classdef BH32 < handle
%BH32 TDT BH32 class.
% obj = BH32(varargin) controls a BH32 through SynapseAPI
% optional argument is the Synapse computer IP address, otherwise
% defaults to 'localhost'
%
% obj reference to BH32 object
% obj.read get d... |
c7e1ba12e684d484afe0658a9bf8fc03f894b4e6e733116a6eae9c98c1b3bc47 | MATLAB | 1,705 | 60 | function Seed = getSeed(data,options)
% calculation of a first guess for the parameters
%function Seed=getSeed(data,options)
% This function finds a seed for initial optimization by logistic
% regression of the data
% Additional parameter is the options.widthalpha which specifies the
% scaling of the width by
% width= ... |
e674d723e5192ddd0a620ffa56c93c20e44f5eed8d3bcd21cdaa4057153e1ab0 | MATLAB | 1,705 | 74 | function res = grs2rgb(img, map)
%%Convert grayscale images to RGB using specified colormap.
% IMG is the grayscale image. Must be specified as a name of the image
% including the directory, or the matrix.
% MAP is the M-by-3 matrix of colors.
%
% RES = GRS2RGB(IMG) produces the RGB image RES from the grayscale image... |
128c163cdcf82533ff9a7c9b3734fe47b2f8a2bf91b141a40045eb8d30d855a5 | MATLAB | 1,707 | 63 | function A=nt_narrowband_scan(x,freqs,sr,Q,plotflag)
%A=nt_narrowband_scan(x,freqs,sr,Q,plotflag) - scan for narrowband components using DSS
%
% A: cell array of DSS matrices
%
% x: data (time*channels or time*channels*trials)
% freqs: Hz, array of bias frequencies
% sr: Hz, sampling rate
% Q: quality factors of s... |
f489188c25e7e1a93a88b705522334b9cd062bb7e9ed1933d1ffd6458f3618d6 | MATLAB | 1,707 | 61 | %% load relevant code base paths
addpath(genpath('.../phototagging_functions/')); %path to matlab/code/lab folder
%% load data
load('.../testdatarun.mat')
%% Import epi image
epi_image = '...test_array_image.jpg';
im2 = imread(epi_image);
%% Get a matrix (tform) for electrode locations on the epi image
% Two... |
e7268f86446c9b7f19b741719f6dd6c4092b83ca1359931c92e21dd2897064e0 | MATLAB | 1,709 | 63 | %%
%
function [f] = bigaussfit(x, y, yError2, zeroError2, mu, sigma, isOrdered)
% fitFunction object (static)
% Note that just for fun, MatLab reorders the parameters such that what
% it calls coefficients is alphabetically (?) sorted
persistent fitFunction;
if isempty(fitFunction)
fitFunctio... |
7d58dbfd9c9a80ae27c0e0194c4db8d9a190807fcbfd990d632be64f93349f16 | MATLAB | 1,710 | 42 | % Toolbox for batch processing ASL perfusion based fMRI data.
% All rights reserved.
% Ze Wang @ TRC, CFN, Upenn 2004
par;
% get the subdirectories in the main directory
for sb = 1:length(PAR.subjects) % for each subject
sprintf('uBEN calc. subject %u .........',sb)
%go get the sessions
for ses=1:P... |
bc0af9916fa5cac08a75b9f70b28e728b89db81492e8fb18f4d6aa4c48a45ed5 | MATLAB | 1,711 | 82 | %%% clo2_Nmax_9_alpha_2_Nsamples_64_lr_0.002 %%%
set(groot,'defaultAxesTickLabelInterpreter','latex');
set(groot,'defaulttextinterpreter','latex');
set(groot,'defaultLegendInterpreter','latex');
E = readmatrix("Eigenenergy_Error_clo2_wVSCF.txt");
Ewo = readmatrix("Eigenenergy_Error_clo2_woVSCF.txt");
Emean = mean(... |
ba9e1589b4394b4d93a3e04e673269eed0ecf48252fe3df983b39d9c16b7f5a2 | MATLAB | 1,712 | 42 | function plotSpikesV2(Number,IIA_batchResults)
%
length = size(IIA_batchResults{Number, 1}.OriginalSignal);
threshold = zeros(length(:,1),1);
for point = 1:length(:,1)
threshold(point,1)=IIA_batchResults{Number, 1}.threshold;
end
thresholdMatrix = [IIA_batchResults{Number, 1}.OriginalSignal(:,1) threshold];
figur... |
e24a99f8d362015471a03e6177cd712641d0dc1ef8f59c2eb19fb5d3180823a7 | MATLAB | 1,714 | 57 | function [answer, anstime]=get_key(keys, wait, response_end);
%[answer, anstime]=get_key(keys, wait);
%
%Get keyboard-input from user - waits for a key press as defined in input variable 'keys' OR just checks once
%
%INPUTS
%keys key numbers we are looking for. scalar for one key, or row vector of key num... |
5c656907493958bccedbebeb02ba1fc343314fc384218633863952351a524c3b | MATLAB | 1,715 | 69 | function outpict = interleave(dim,A,B,varargin)
% OUTPICT=INTERLEAVE(DIM,A,B,{C},{D},...,{WIDTH})
% Combine multiple images by interleaving them along a given dimension,
% alternating in the given order. The resulting image dimension is multiplied
% by the number of images being combined.
%
% A, B, C, etc are... |
84c3757f88e4d475739105cf2c00c8ce8cddc6b0c0253b4f9c2ef489a6ae9d93 | MATLAB | 1,715 | 51 |
% The purpose of this file is to generate a file that gives a vector of
% grayordinate labels, its id lookup tables
clc;clear all;close all;restoredefaultpath;
addpath(genpath('/ImagePTE1/ajoshi/code_farm/bfp/dev/gifti-1.6'));
addpath(genpath('/ImagePTE1/ajoshi/code_farm/bfp/src'));
%addpath(genpath('/ImagePTE1/ajoshi... |
9d38ab0dac88dd6b6477423bab737d38bcbd0c1b52538bb18200bd20f7ffc8a2 | MATLAB | 1,717 | 46 | function datatypes=getdatatypes(data)
%datatypes=getdatatypes(data)
%
%Determines the type of each walker data set in 'data'
%Each type may be:
%'mm' mm walker, either alone or in an mmw matrix
%'md' md walker (alone)
%'cellmm' mm walker in a cell array
%'cellmd' md walker in a... |
88b16a8ffef549fa3fa94be3a2a6109134cfde67ae2e6ed1813a929677f24875 | MATLAB | 1,721 | 47 | % Like pinv() or inv(), except that slices (3rd and higher dimensions) are supported and each slice
% is treated independently for computing the inverse. If tol = 0, then the exact inverse is computed
% via inv(). Otherwise, a truncated SVD is used to compute the inverse, where singular values less
% than the specif... |
3fc116e58ccc5f060e73c9295ac00436e369ccf5afb7ed7e4a9ce0ccc7b6b98d | MATLAB | 1,722 | 59 | %
% BDP BrainSuite Diffusion Pipeline
%
% Copyright (C) 2019 The Regents of the University of California and
% the University of Southern California
%
% Created by Chitresh Bhushan, Divya Varadarajan, Justin P. Haldar, Anand A. Joshi,
% David W. Shattuck, and Richard M. Leahy
%
% This program is free sof... |
4742f7b083298ebbed088de2aa942e2d8e9e831ff149ccaea836dadcb3f46c2a | MATLAB | 1,725 | 69 | function varargout = fourdee(fhandle,varargin)
% FOURDEE(FHANDLE, ARG1, ARG2...)
% Generic tool for using single-frame image processing functions
% on multiframe (4-D) image sets. Only works if first argument
% for said function is a 4D array.
%
% As outputs are arranged along dim4, things... |
a6a7c3d6a1640603dc40af7b0028a7168e16852a76c2591727b8f7283936caaf | MATLAB | 1,727 | 62 | function splitSlide(fname,A1,B1,C1,D1)
%fname = '/dcl02/lieber/ajaffe/SpatialTranscriptomics/LIBD/spatialDLPFC/Images/Lieber_Institute_OTS-20-7748_rush_posterior.tif';
numimgs = size(imfinfo(fname),1); %numimgs is the number of images in the multiplane tif file
N = 4; %number of capture areas
disp(['The multiplane tif ... |
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