sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ee3d09d827928d7d30fc4e3a70334a83e4220da8135ff6adc33c1fb6603eb26f | C/C++ | 181 | 7 | #ifndef CODE_mapThreadsSpawn
#define CODE_mapThreadsSpawn
#include "Parameters.h"
#include "ReadAlignChunk.h"
void mapThreadsSpawn (Parameters &P, ReadAlignChunk** RAchunk);
#endif |
ae582d7638d1798ee746adf421d557e6c4f062ba8e4ae4abc7aae269c6e77ef0 | C/C++ | 185 | 8 | #ifndef CODE_sjdbLoadFromStream
#define CODE_sjdbLoadFromStream
#include <fstream>
#include "SjdbClass.h"
void sjdbLoadFromStream(ifstream &sjdbStreamIn, SjdbClass &sjdbLoci);
#endif
|
dba5cb4d79f901dc5c06a599f2b7a9863d9d7b603f81029768714f012c8a45c9 | C/C++ | 196 | 14 | #pragma once
namespace plog
{
class IAppender
{
public:
virtual ~IAppender()
{
}
virtual void write(const Record& record) = 0;
};
}
|
da3dc5a92bf76102cd4f8941109e50a753dd59fc8dd53ee47088d6d5b0420cca | C/C++ | 198 | 10 | #ifndef CODE_sjdbLoadFromFiles
#define CODE_sjdbLoadFromFiles
#include <fstream>
#include "SjdbClass.h"
#include "Parameters.h"
void sjdbLoadFromFiles(Parameters &P, SjdbClass &sjdbLoci);
#endif
|
7ca46b463eaf4d32368af3999ede2212729f18a6d3a7c8b85af3892654e47750 | C/C++ | 203 | 9 | #ifndef H_readBarcodeLoad
#define H_readBarcodeLoad
#include "IncludeDefine.h"
#include "Parameters.h"
void loadBarcodeRead(Parameters &P, istream **readInStream, string &seq1, string &qual1);
#endif
|
79746c42ee4d62792542e377b6f966621de949c83d276d798fb208a89e7f43e3 | C/C++ | 208 | 10 | #ifndef H_samHeaders
#define H_samHeaders
#include "Parameters.h"
#include "Genome.h"
#include "Transcriptome.h"
void samHeaders(Parameters &P, Genome &genomeMain, Transcriptome &transcriptomeMain);
#endif |
00b4452e9b7191c305f31aac6c458110e9277077e3804645745fd901ca63ab85 | C/C++ | 216 | 9 | #ifndef CODE_genomeParametersWrite
#define CODE_genomeParametersWrite
#include "Parameters.h"
#include "Genome.h"
void genomeParametersWrite(string fileName, Parameters& P, string errorOut, Genome &mapGen);
#endif |
4466ef570bdb56bdc4e8ee8006b178990882edf8d75fd32553e5784ff1024a68 | C/C++ | 231 | 11 | #pragma once
#ifndef SPECTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define SPECTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
namespace Test {
bool RunSpecTests();
}
#endif // SPECTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
|
576c9875252f06533361d031fd6896cd82150ae79916120cc3dfcdc41259f4e3 | C/C++ | 231 | 10 | #ifndef CODE_genomeScanFastaFiles
#define CODE_genomeScanFastaFiles
#include "Parameters.h"
#include "IncludeDefine.h"
#include "Genome.h"
uint genomeScanFastaFiles (Parameters &P, char* G, bool flagRun, Genome &mapGen);
#endif
|
8121066d77d9ed85c00f1a3b2228140435cc901beacb4960116c48246a4428d2 | C/C++ | 233 | 17 | #ifndef UNIT_TEST_H
#define UNIT_TEST_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
using namespace std;
class UnitTest{
public:
UnitTest();
void run();
bool report(bool result, string message);
};
#endif |
59a3b90a6aa438a291353717112b741d68438bfe6dfbf7ece44585c433418f60 | C/C++ | 235 | 10 | #ifndef CODE_bamRemoveDuplicates
#define CODE_bamRemoveDuplicates
#include <string>
#include "Parameters.h"
using namespace std;
void bamRemoveDuplicates(const string bamFileName, const string bamFileNameOut, Parameters &P);
#endif
|
3c55722869059ab22e1063374952e8b82d94005dffc2257738a95eec8571ff34 | C/C++ | 239 | 11 | #pragma once
#ifndef PARSERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define PARSERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
namespace Test {
bool RunParserTests();
}
#endif // PARSERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
|
bc22c19347bd6104ce3ab6cf93e533e97b0f8339abaad347d21a37ee8146b9c2 | C/C++ | 240 | 8 | // stdafx.h : include file for standard system include files,
// or project specific include files that are used frequently, but
// are changed infrequently
//
#pragma once
// TODO: reference additional headers your program requires here
|
c28341baa151881592a16efd939130d2d945550c9cb2517af95c66baecb877ac | C/C++ | 240 | 9 | #ifndef H_sjAlignSplit
#define H_sjAlignSplit
#include "IncludeDefine.h"
#include "Genome.h"
bool sjAlignSplit(uint a1,uint aLength, const Genome &mapGen, uint &a1D, uint &aLengthD, uint &a1A, uint &aLengthA, uint &isj);
#endif
|
d82dbc48e13349a8fa0ebd7f6b950121da8a51979866b94e665e6b189ea9c6e2 | C/C++ | 241 | 10 | #ifndef CODE_sjdbPrepare
#define CODE_sjdbPrepare
#include "SjdbClass.h"
#include "Parameters.h"
#include "Genome.h"
void sjdbPrepare (SjdbClass &sjdbLoci, Parameters &P, uint nGenomeReal, string outDir, Genome &mapGen, char *Gsj);
#endif |
14cdf4d622091e1215d5a56f2568d7833fb184eaacbe74db64bea5282d250338 | C/C++ | 242 | 10 | #ifndef CODE_sjdbInsertJunctions
#define CODE_sjdbInsertJunctions
#include "Parameters.h"
#include "Genome.h"
#include "SjdbClass.h"
void sjdbInsertJunctions(Parameters & P, Genome & mapGen, Genome & mapGen1, SjdbClass & sjdbLoci);
#endif
|
612a97cf48b553bd120f30929f8cb43f972b1dbe986911cbe3d60f48cbb9826d | C/C++ | 242 | 14 | #ifndef LDA_DATA_H
#define LDA_DATA_H
#include <stdio.h>
#include <stdlib.h>
#include "lda.h"
#define OFFSET 0; // offset for reading data
corpus* read_data(char* data_filename);
int max_corpus_length(corpus* c);
#endif
|
640a7ec5d91c6c519071bae93b2d1a39a0c00546e38105f6337ae0e4e4b5fb71 | C/C++ | 243 | 11 | #pragma once
#ifndef EMITTERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define EMITTERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
namespace Test {
bool RunEmitterTests();
}
#endif // EMITTERTESTS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
|
fb971da7701cf692cb4ff72e0fc2db3d55cd9f38df218e1897e3946d4de608c9 | C/C++ | 249 | 5 | #include "ReadAlign.h"
//#include "Transcript.h"
//#include "Parameters.h"
void funPrimaryAlignMark(Transcript **trMult, uint64 nTr, Parameters &P, int maxScore, std::uniform_real_distribution<double> rngUniformReal0to1, std::mt19937 rngMultOrder); |
dd2e1f549c4cb00a4c482ecc812046b8839f97a14b44ceba19c5826b778c3368 | C/C++ | 254 | 6 | #include "IncludeDefine.h"
#include "Parameters.h"
#include "Transcript.h"
bool extendAlign( char* R, char* G, uint rStart, uint gStart, int dR, int dG, uint L, uint Lprev, uint nMMprev, uint nMMmax, double pMMmax, bool extendToEnd, Transcript* trA );
|
cebc4ef31bd324ad24609958f8be3c77c9984ef3fabb65c3bf5cdd7b2bfa1721 | C/C++ | 256 | 11 | #ifndef H_bamSortByCoordinate
#define H_bamSortByCoordinate
#include "Parameters.h"
#include "ReadAlignChunk.h"
#include "Genome.h"
#include "Solo.h"
void bamSortByCoordinate(Parameters &P, ReadAlignChunk **RAchunk, Genome &genome, Solo &solo) ;
#endif
|
cf7548918f72949df43f894df79dbcb97c4169907cb5b4248637cfc84d48a420 | C/C++ | 263 | 11 | #ifndef CODE_funCompareUintAndSuffixes
#define CODE_funCompareUintAndSuffixes
#include <stdint.h>
extern char* g_funCompareUintAndSuffixes_G;
extern uint64_t g_funCompareUintAndSuffixes_L;
int funCompareUintAndSuffixes ( const void *a, const void *b);
#endif
|
7b7f188a241c8beeeb804e4ea44c722f966a9117cc24538ae5bf9c2a19ce98a6 | C/C++ | 264 | 17 | #ifndef DEF_SjdbClass
#define DEF_SjdbClass
#include "IncludeDefine.h"
#include <set>
class SjdbClass {
public:
vector <string> chr;
vector <uint64> start,end;
vector <char> str;
vector <uint8> priority;
vector<set<uint64>> gene;
};
#endif
|
064e51f29f457eec18943f1420a51e5e2044e8f9cd683c90e0d22baa9e96218b | C/C++ | 266 | 14 | /**
* Copyright (c) 2016-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
namespace fasttext {
typedef float real;
}
|
07901af998d59bca5682f65c8c6a34ab852db4ad93d7b461276702bdfac227af | C/C++ | 267 | 11 | #ifndef H_twoPassRunPass1
#define H_twoPassRunPass1
#include "Parameters.h"
#include "Genome.h"
#include "Transcriptome.h"
#include "SjdbClass.h"
void twoPassRunPass1(Parameters &P, Genome &genomeMain, Transcriptome *transcriptomeMain, SjdbClass &sjdbLoci);
#endif |
4b575705f932b165c9282867d283df29afc6f9e5d17b79f1250964e9d16f8bff | C/C++ | 270 | 10 | /*
Copyright Rene Rivera 2013
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_DETAIL_OS_DETECTED
#define BOOST_PREDEF_DETAIL_OS_DETECTED 1
#endif
|
64b0bd865ce40ecdbbc079fbe70f3f507cdc885d3529e467d10878654bd01a38 | C/C++ | 274 | 10 | /*
Copyright Rene Rivera 2014
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_DETAIL_COMP_DETECTED
#define BOOST_PREDEF_DETAIL_COMP_DETECTED 1
#endif
|
c173711895acaa0f30bc6952c4b2643b65f34d5f578c9b394b5195ff59d4779c | C/C++ | 274 | 10 | /*
Copyright Rene Rivera 2014
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_DETAIL_PLAT_DETECTED
#define BOOST_PREDEF_DETAIL_PLAT_DETECTED 1
#endif
|
066d409e8341c37ce68756269ff911b4aa6c9bd15784b62c91ed0321565d0ce8 | C/C++ | 278 | 10 | #ifndef CODE_sjdbBuildIndex
#define CODE_sjdbBuildIndex
#include "Parameters.h"
#include "PackedArray.h"
#include "Genome.h"
void sjdbBuildIndex (Parameters &P, char *Gsj, char *G, PackedArray &SA, PackedArray &SA2, PackedArray &SAi, Genome &mapGen, Genome &mapGen1);
#endif
|
ec98bab5f5c417d17ba707c512e8b26ae9bf5dc983efba4593fc7b85282b94b5 | C/C++ | 278 | 22 | #ifndef PROCESSOR_H
#define PROCESSOR_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include "options.h"
using namespace std;
class Processor{
public:
Processor(Options* opt);
~Processor();
bool process();
private:
Options* mOptions;
};
#endif |
062b890748f731bb8d56cd03c0603d15f9739d97e53d64d79adc80ce3040ce16 | C/C++ | 283 | 13 | #ifndef CODE_signalFromBAM
#define CODE_signalFromBAM
#include "htslib/htslib/sam.h"
#include <fstream>
#include <string>
#include "Stats.h"
#include "Parameters.h"
using namespace std;
void signalFromBAM(const string bamFileName, const string sigFileName, Parameters P);
#endif
|
1dfffd61f5553d0c0d49589d0a6984b70855c5e23d654fd0ac7b6e33df04b6af | C/C++ | 291 | 10 | #ifndef CODE_funCompareUintAndSuffixesMemcmp
#define CODE_funCompareUintAndSuffixesMemcmp
#include <stdint.h>
extern char* g_funCompareUintAndSuffixesMemcmp_G;
extern uint64_t g_funCompareUintAndSuffixesMemcmp_L;
int funCompareUintAndSuffixesMemcmp ( const void *a, const void *b);
#endif |
e3596580f4b0ec4dac1e41c2265ba507fdf83866fd1f6a4cbc81119c1b3664fa | C/C++ | 298 | 11 | // GENERATED FILE -- DO NOT EDIT
#ifndef DRACO_FEATURES_H_
#define DRACO_FEATURES_H_
#define DRACO_MESH_COMPRESSION_SUPPORTED
#define DRACO_STANDARD_EDGEBREAKER_SUPPORTED
#define DRACO_PREDICTIVE_EDGEBREAKER_SUPPORTED
#define DRACO_BACKWARDS_COMPATIBILITY_SUPPORTED
#endif // DRACO_FEATURES_H_
|
ce5bb57efd142f4f86d6d70b0e52e6e9a2af5ba85e48b10b4e6486ea5b44153f | C/C++ | 300 | 16 | #pragma once
#ifndef LTNODE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define LTNODE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
namespace YAML
{
class Node;
struct ltnode {
bool operator()(const Node *pNode1, const Node *pNode2) const;
};
}
#endif // LTNODE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
|
e8be7aa723afb4fc7db0e2eab13b6e50732571457d510092d4b100069cdb5020 | C/C++ | 303 | 12 | #ifndef CODE_BAMbinSortUnmapped
#define CODE_BAMbinSortUnmapped
#include "IncludeDefine.h"
#include "Parameters.h"
#include "Genome.h"
#include "Solo.h"
#include SAMTOOLS_BGZF_H
void BAMbinSortUnmapped(uint32 iBin, uint nThreads, string dirBAMsort, Parameters &P, Genome &genome, Solo &solo);
#endif
|
e0b7e3cb5ebcf09cd29d4b879c5e72928bddd0b00a49e38d8bc9bf3a32f9eb63 | C/C++ | 305 | 15 | // stdafx.h : include file for standard system include files,
// or project specific include files that are used frequently, but
// are changed infrequently
//
#pragma once
#include "targetver.h"
#include <stdio.h>
#include <tchar.h>
// TODO: reference additional headers your program requires here
|
53b0b59e982b3463e7b74f4f1583b4c30daac250fc1b0fbdf6ebec75ac1a926d | C/C++ | 306 | 7 | #include "IncludeDefine.h"
#include "Parameters.h"
#include "Transcript.h"
#include "Genome.h"
intScore stitchAlignToTranscript(uint rAend, uint gAend, uint rBstart, uint gBstart, uint L, uint iFragB, uint sjAB, Parameters& P, char* R, Genome &mapGen, Transcript *trA, uint outFilterMismatchNmaxTotal);
|
7f988ed4cd4fe1acdede1f014931a08c508cc82f9407bc2b869ec2195c10c9c9 | C/C++ | 306 | 8 | #pragma once
// Including SDKDDKVer.h defines the highest available Windows platform.
// If you wish to build your application for a previous Windows platform, include WinSDKVer.h and
// set the _WIN32_WINNT macro to the platform you wish to support before including SDKDDKVer.h.
#include <SDKDDKVer.h>
|
a82d7b8e9bb0a92f33a61d4533f1466d993f36028e185b169d6a16988bd35e89 | C/C++ | 316 | 12 | // Copyright Antony Polukhin, 2016-2022.
//
// Distributed under the Boost Software License, Version 1.0. (See
// accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// No include guards! Intentionally.
#ifdef BOOST_STACKTRACE_FUNCTION
# undef BOOST_STACKTRACE_FUNCTION
#endif
|
5b5aa11fbe3e0c58356e7097d235af1f82b7d9596473f18d49371861eb418264 | C/C++ | 318 | 11 | #ifndef CODE_insertSeqSA
#define CODE_insertSeqSA
#include "IncludeDefine.h"
#include "PackedArray.h"
#include "Parameters.h"
#include "Genome.h"
uint insertSeqSA(PackedArray & SA, PackedArray & SA1, PackedArray & SAi, char * G, char * G1, uint64 nG, uint64 nG1, uint64 nG2, Parameters & P, Genome &mapGen);
#endif
|
6cfe353310a9f9db1ae4f55018358ceeb0c6b013c5cfe7b68c639d43dd910709 | C/C++ | 319 | 13 | /*
Copyright Rene Rivera 2008-2013
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_LIBRARY_C__PREFIX_H
#define BOOST_PREDEF_LIBRARY_C__PREFIX_H
#include <boost/predef/detail/_cassert.h>
#endif
|
f2e927b958a4230c6fd85535203e2e711ff4d651c8060add98d58f85a8639671 | C/C++ | 319 | 9 | #ifndef CODE_ErrorWarning
#define CODE_ErrorWarning
#include "IncludeDefine.h"
#include "Parameters.h"
void exitWithError(string messageOut, ostream &streamOut1, ostream &streamOut2, int errorInt, Parameters &P);
void warningMessage(string messageOut, ostream &streamOut1, ostream &streamOut2, Parameters &P);
#endif
|
f69f5806875d5196d7172d1db6b03dba324b3c2c45a0562d46f0610c5da6474c | C/C++ | 324 | 16 | #ifndef LDA_INFERENCE_H
#define LDA_INFERENCE_H
#include <math.h>
#include <float.h>
#include <assert.h>
#include "lda.h"
#include "utils.h"
float VAR_CONVERGED;
int VAR_MAX_ITER;
double lda_inference(document*, lda_model*, double*, double**);
double compute_likelihood(document*, lda_model*, double**, double*);
#en... |
4a7dee51fc80c71b3ce4ad7e99a3a9eeba5015d4ccacff704d36426c42a494c9 | C/C++ | 325 | 14 | #ifdef EIGEN_WARNINGS_DISABLED
#undef EIGEN_WARNINGS_DISABLED
#ifndef EIGEN_PERMANENTLY_DISABLE_STUPID_WARNINGS
#ifdef _MSC_VER
#pragma warning( pop )
#elif defined __INTEL_COMPILER
#pragma warning pop
#elif defined __clang__
#pragma clang diagnostic pop
#endif
#endif
#endif // EIGEN_WARNINGS_DISA... |
79d32550ca3d06ed42106cfcb936905cf70ac9ad784309a4e8ba47767459085e | C/C++ | 325 | 15 | #pragma once
#ifndef YAML_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define YAML_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#include "parser.h"
#include "node.h"
#include "stlnode.h"
#include "iterator.h"
#include "emitter.h"
#include "stlemitter.h"
#include "exceptions.h"
#endif // YAML_H_62B23520_7C8E_11DE_8A39_0800200C... |
061a222cb7dc702ddac9b7b7f36a0477ea82847c784b6c6c082fb4a336617532 | C/C++ | 330 | 15 | /*
Copyright Rene Rivera 2011-2012
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_DETAIL__EXCEPTION_H
#define BOOST_PREDEF_DETAIL__EXCEPTION_H
#if defined(__cplusplus)
#include <exception>
#endi... |
f42323a77e39386c9e93da9818c274e2a8947c318aba19f39f677169a4fedc68 | C/C++ | 336 | 12 | #ifndef CODE_BAMbinSortByCoordinate
#define CODE_BAMbinSortByCoordinate
#include "IncludeDefine.h"
#include "Parameters.h"
#include "Genome.h"
#include "Solo.h"
#include SAMTOOLS_BGZF_H
void BAMbinSortByCoordinate(uint32 iBin, uint binN, uint binS, uint nThreads, string dirBAMsort, Parameters &P, Genome &mapGen, Solo... |
ceca587f7402edc7b3ec53dfd7c875d91183e461f211fd6512f9f9f7ec74f08e | C/C++ | 345 | 18 | #pragma once
#include <asio/ip/address.hpp>
#include <cstdint>
#include <string>
#include <vector>
namespace lsl {
class netif {
public:
asio::ip::address addr;
uint32_t ifindex;
std::string name;
};
/// Enumerate all local interface addresses (IPv6 index, IPv4 address)-pairs
std::vector<netif> get_local_interfac... |
8fdfdc20c7e8cac51f80cb7b35965bcbd5c95408e899d79a30ee191705938407 | C/C++ | 346 | 15 | #ifndef __VCF_SWEEP_H__
#define __VCF_SWEEP_H__
#include "hts.h"
#include "vcf.h"
typedef struct _bcf_sweep_t bcf_sweep_t;
bcf_sweep_t *bcf_sweep_init(const char *fname);
void bcf_sweep_destroy(bcf_sweep_t *sw);
bcf_hdr_t *bcf_sweep_hdr(bcf_sweep_t *sw);
bcf1_t *bcf_sweep_fwd(bcf_sweep_t *sw);
bcf1_t *bcf_sweep_bwd(... |
688d791806004c3f334cb94fcdb604811da4647b18eb50159cd0394274b567c2 | C/C++ | 350 | 17 | /*
Copyright Rene Rivera 2011-2012
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_DETAIL__CASSERT_H
#define BOOST_PREDEF_DETAIL__CASSERT_H
#if defined(__cplusplus)
#include <cassert>
#else
#incl... |
5a21c6ac7149a0427be40e2d387bba3f47b00966ec3e584e77fa100b66f8280d | C/C++ | 351 | 12 | #ifndef _MEDAKA_FASTRLE_H
#define _MEDAKA_FASTRLE_H
/** Read a fasta/q and writes quality-RLE fastq file.
*
* @param fname name of file to be rle-compressed.
* @param block_size maximum RLE compressed size, homopolymers larger than this value will be split in blocks.
* @returns
*
*/
size_t fastrle(char *fna... |
c9d3d264672027e053a4d085d3858225240455ed56f2d4004562384042a1c7a1 | C/C++ | 351 | 18 | #ifndef UTILS_H
#define UTILS_H
#include <stdio.h>
#include <math.h>
#include <float.h>
#include <stdlib.h>
#include <sys/stat.h>
#include <sys/types.h>
double log_sum(double log_a, double log_b);
double trigamma(double x);
double digamma(double x);
double log_gamma(double x);
void make_directory(char* name);
int arg... |
f2fbf18d14dd458c5fb0348639781ed97d53a50c870aecc947485349ddcb6f52 | C/C++ | 356 | 15 | /*
Copyright Rene Rivera 2015-2016
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_VERSION_H
#define BOOST_PREDEF_VERSION_H
#include <boost/predef/version_number.h>
#define BOOST_PREDEF_VERSION ... |
7182b14352020f6350f51342b6100d500b98d6d6e092c182ecf8b964c9c9ac86 | C/C++ | 357 | 15 | /*
Copyright Rene Rivera 2015-2016
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_VERSION_H
#define BOOST_PREDEF_VERSION_H
#include <boost/predef/version_number.h>
#define BOOST_PREDEF_VERSION ... |
2011d6d507c98e3d0a89320e88597cb0304887fc23210d7b1b46c787160e952f | C/C++ | 361 | 18 | #pragma once
#include <cstdint>
#include <string>
#include <vector>
#include <boost/asio/ip/address.hpp>
namespace lsl {
class netif {
public:
lslboost::asio::ip::address addr;
uint32_t ifindex;
std::string name;
};
/// Enumerate all local interface addresses (IPv6 index, IPv4 address)-pairs
std::vector<netif> ge... |
4a4b5be3b09fc4e81da4734ca6a604ba3528d479874bc5f0f2d4c235fa003a97 | C/C++ | 364 | 17 | /*
Copyright Rene Rivera 2011-2012
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_DETAIL_TEST_H
#define BOOST_PREDEF_DETAIL_TEST_H
#if !defined(BOOST_PREDEF_INTERNAL_GENERATE_TESTS)
#define BOO... |
c1303b7390d04499e5a5569d96cc67ceafb5169f415ac202d2d9686ad5c75c5e | C/C++ | 389 | 16 | /**
* Copyright 2017-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <torch/extension.h> // @manual=//caffe2:torch_extension
void alignmentTrainCUDAWrapper(
cons... |
04ab96f887b47f722f67cd996256c01e9adc64c1e0e712136b5b3a3510ac0bee | C/C++ | 391 | 12 | #ifndef H_readLoad
#define H_readLoad
#include "IncludeDefine.h"
#include "Parameters.h"
#include "SequenceFuns.h"
int readLoad(istream& readInStream, Parameters& P, uint& Lread, uint& LreadOriginal, \
char* readName, char* Seq, char* SeqNum, char* Qual, vector<ClipMate> &clipOneMate, \
uint &iReadAll, uin... |
c5e7bb41bea3899914d1292109065a23a9b0f333f22ebf3bf773be0fb43a3fd5 | C/C++ | 391 | 14 | #pragma once
#include <string>
namespace lsl {
template <typename T> std::string to_string(T val) { return std::to_string(val); }
template <typename T> T from_string(const std::string &str);
template <> std::string to_string(double str);
template <> std::string to_string(float str);
template <> inline bool from_str... |
b1b9d76bd2f3505882f0223e99d69e879c00be7362cd5a8c8b56d4cad07d1060 | C/C++ | 401 | 14 | //{{NO_DEPENDENCIES}}
// Microsoft Visual C++ generated include file.
// Used by mexPlex.rc
// Next default values for new objects
//
#ifdef APSTUDIO_INVOKED
#ifndef APSTUDIO_READONLY_SYMBOLS
#define _APS_NEXT_RESOURCE_VALUE 101
#define _APS_NEXT_COMMAND_VALUE 40001
#define _APS_NEXT_CONTROL_... |
b9e7f0c1e76940539c13bbee3fd4472ccadc9c37ccfd8f973fb7b138862380d8 | C/C++ | 405 | 22 | #ifndef MATCHER_H
#define MATCHER_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
using namespace std;
class Matcher{
public:
Matcher();
~Matcher();
static bool matchWithOneInsertion(const char* insData, const char* normalData, int cmplen, int diffLimit);
static int diffWithOneInsertion(c... |
37dff56846da27b4d05abe222071d05a073e156b94da656060a8fb12613c0939 | C/C++ | 406 | 25 | #ifndef UMI_PROCESSOR_H
#define UMI_PROCESSOR_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include "options.h"
#include "read.h"
using namespace std;
class UmiProcessor{
public:
UmiProcessor(Options* opt);
~UmiProcessor();
void process(Read* r1, Read* r2 = NULL);
void addUmiToName(Read... |
4d495171dfaac6f9c64f559fee44e39511c96b2e6b00b72265bba1ee3bd131b9 | C/C++ | 411 | 18 | #pragma once
#ifndef SCANTAG_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define SCANTAG_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#include <string>
#include "stream.h"
namespace YAML
{
const std::string ScanVerbatimTag(Stream& INPUT);
const std::string ScanTagHandle(Stream& INPUT, bool& canBeHandle);
const std::string ... |
2be7d681b896bc21c91cccb33819efea05b26552ade89debf201301c2736784f | C/C++ | 420 | 16 | /*
Copyright Charly Chevalier 2015
Copyright Joel Falcou 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#if !defined(BOOST_PREDEF_HARDWARE_H) || defined(BOOST_PREDEF_INTERNAL_GENERATE_TESTS)
#ifndef BOOST_PREDEF... |
c24d37e3c974d15745070a3ac5854360614087be8ea187711bc58d060abe13e7 | C/C++ | 420 | 16 | /*
Copyright Rene Rivera 2013-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#if !defined(BOOST_PREDEF_OTHER_H) || defined(BOOST_PREDEF_INTERNAL_GENERATE_TESTS)
#ifndef BOOST_PREDEF_OTHER_H
#define BOOST_PREDEF_... |
2f9b4f8cddb65235a59dc3803509e38a9c6e1f494baadac7dd5b5f782ea1b716 | C/C++ | 424 | 16 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#if !defined(BOOST_PREDEF_LIBRARY_H) || defined(BOOST_PREDEF_INTERNAL_GENERATE_TESTS)
#ifndef BOOST_PREDEF_LIBRARY_H
#define BOOST_PRE... |
7d8c1c873ce9bc346ad6005bb9d75cce5c6352aaf7395385be216a9452a34908 | C/C++ | 427 | 11 | /* inffast.h -- header to use inffast.c
* Copyright (C) 1995-2003, 2010 Mark Adler
* For conditions of distribution and use, see copyright notice in zlib.h
*/
/* WARNING: this file should *not* be used by applications. It is
part of the implementation of the compression library and is
subject to change. Appli... |
f8f9da93f3831aa7222381779f4102b76c9797b94cf1605ecdf4d640d0fede76 | C/C++ | 427 | 21 | #pragma once
#ifndef NULL_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define NULL_H_62B23520_7C8E_11DE_8A39_0800200C9A66
namespace YAML
{
class Node;
struct _Null {};
inline bool operator == (const _Null&, const _Null&) { return true; }
inline bool operator != (const _Null&, const _Null&) { return false; }
bool... |
97d53a09e0fde4215b203f9fcdf0d53ee3534cd060cffb53e1ad1da4fde1bd31 | C/C++ | 437 | 29 | #ifndef SEQUENCE_H
#define SEQUENCE_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include <iostream>
using namespace std;
class Sequence{
public:
Sequence();
Sequence(string* seq);
~Sequence();
void print();
int length();
Sequence reverseComplement();
Sequence operator~();... |
ac7b18870b2738f50b25185864e7316038dc6ba9d880fca0f4d8f80f81914e7b | C/C++ | 439 | 13 | #ifndef H_soloInputFeatureUMI
#define H_soloInputFeatureUMI
#include <fstream>
#include <array>
#include <vector>
#include "IncludeDefine.h"
#include "SoloCommon.h"
bool soloInputFeatureUMI(fstream *strIn, int32 featureType, bool readInfoYes, array<vector<uint64>,2> &sjAll, uint64 &iread,
... |
387931a1f0acc59a0fd2e495c212190b916e9106da4570c837545e426c1f8dbb | C/C++ | 444 | 22 | #pragma once
#ifndef MARK_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define MARK_H_62B23520_7C8E_11DE_8A39_0800200C9A66
namespace YAML
{
struct Mark {
Mark(): pos(0), line(0), column(0) {}
static const Mark null() { return Mark(-1, -1, -1); }
int pos;
int line, column;
private:
Mark(int pos_, int l... |
a833232e9d7af18e66bde51524fcf29ec2a9f77fd5e27be4f363a47f7d3845cd | C/C++ | 444 | 22 | #pragma once
#ifndef NONCOPYABLE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define NONCOPYABLE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
namespace YAML
{
// this is basically boost::noncopyable
class noncopyable
{
protected:
noncopyable() {}
~noncopyable() {}
private:
noncopyable(const noncopyable&);
... |
02c7606aa7440e3f264f756ccd8a38aaf8cc41d4071a458156f59bb696273a5e | C/C++ | 456 | 20 | #ifndef LDA_ALPHA_H
#define LDA_ALPHA_H
#include <stdlib.h>
#include <math.h>
#include <float.h>
#include "lda.h"
#include "utils.h"
#define NEWTON_THRESH 1e-5
#define MAX_ALPHA_ITER 1000
double alhood(double a, double ss, int D, int K);
double d_alhood(double a, double ss, int D, int K);
double d2_alhood(double a,... |
c2d72c445f4d691ca4bd62f1a28d36076cfd54497db9caf4983faaba22da5ade | C/C++ | 479 | 11 | #ifndef CODE_genomeSAindex
#define CODE_genomeSAindex
#include "PackedArray.h"
#include "Parameters.h"
#include "Genome.h"
void genomeSAindex(char * G, PackedArray & SA, Parameters & P, PackedArray & SAip, Genome &mapGen);
void genomeSAindexChunk(char * G, PackedArray & SA, Parameters & P, PackedArray & SAi, uint iSA1... |
9526d0b122400bd0358a66d1ecbd7c654b6d6070e8e203173f506a5ad0350d36 | C/C++ | 481 | 23 | #ifndef H_SoloRead
#define H_SoloRead
#include "SoloReadBarcode.h"
#include "SoloReadFeature.h"
#include "ReadAnnotations.h"
class SoloRead {
public:
SoloReadBarcode *readBar;
SoloReadFeature **readFeat;
SoloRead(Parameters &Pin, int32 iChunkIn);
void readFlagReset();
void record(uint64 nTr, ... |
5658609dbbfd2ccac063837c7c1e8d3b02784d9b3136a58415e463476f8d497f | C/C++ | 484 | 17 | /*
Copyright Rene Ferdinand Rivera Morell 2013-2020
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#if !defined(BOOST_PREDEF_OTHER_H) || defined(BOOST_PREDEF_INTERNAL_GENERATE_TESTS)
#ifndef BOOST_PREDEF_OTHER_H
#def... |
d010357e10b6c898d626af8ea95d3517d623390a3b996176405215c41f8ad0d6 | C/C++ | 488 | 19 | #ifndef CODE_ChimericTranscript
#define CODE_ChimericTranscript
#include "IncludeDefine.h"
#include "Parameters.h"
#include "Transcript.h"
class ChimericTranscript
{//
public:
Transcript **chTrs; //all chimeric transcripts
uint nCh; //number of recorded (best) chimeric transcripts
... |
029fb0fe83110bdc872309acafcbea87a99043beb9f5e68a7c31627f8d765bcd | C/C++ | 489 | 26 | #pragma once
#ifndef TAG_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define TAG_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#include <string>
namespace YAML
{
struct Token;
struct ParserState;
struct Tag {
enum TYPE {
VERBATIM, PRIMARY_HANDLE, SECONDARY_HANDLE, NAMED_HANDLE, NON_SPECIFIC
};
Tag(const Token& t... |
9ba01c10e50507e495c6e33cd8b11173f572bcbab509a511af51d7b6855a45b1 | C/C++ | 513 | 26 | #pragma once
#include <iostream>
namespace plog
{
template<class Formatter>
class ConsoleAppender : public IAppender
{
public:
ConsoleAppender()
{
#ifdef _WIN32
::setlocale(LC_ALL, "");
#endif
}
virtual void write(const Record& record)
... |
92666722eaeba0b7657fffa8f86255d08c9f0582a1204fd794cfca83ffc365ee | C/C++ | 515 | 18 | /*
Copyright Rene Rivera 2011-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#if !defined(BOOST_PREDEF_LANGUAGE_H) || defined(BOOST_PREDEF_INTERNAL_GENERATE_TESTS)
#ifndef BOOST_PREDEF_LANGUAGE_H
#define BOOST_P... |
816b8007e1cabf8a7c09cd8aa266714bb1b80b3f3cb283b3336e00447cf4b490 | C/C++ | 528 | 24 | #pragma once
#include <iomanip>
#include <plog/Util.h>
namespace plog
{
class FuncMessageFormatter
{
public:
static util::nstring header()
{
return util::nstring();
}
static util::nstring format(const Record& record)
{
util::n... |
ddcf1de6fc401edb1d332dafc92d56e17ce48a5691cac6a84d2b2775d238acca | C/C++ | 528 | 19 | /**
* Copyright 2017-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <torch/extension.h> // @manual=//caffe2:torch_extension
#define CHECK_CUDA(x) \
TORCH_CHECK(x.... |
f97cce62b7fb4a9e09e7521d83cbc1dc3e74e23cab24c6b251e30da5df55c54d | C/C++ | 533 | 12 | #include "IncludeDefine.h"
#include "Parameters.h"
#include "Transcript.h"
#include "extendAlign.h"
#include "stitchAlignToTranscript.h"
#include "ReadAlign.h"
void stitchWindowAligns(uint iA, uint nA, int Score, bool WAincl[], uint tR2, uint tG2, Transcript trA, \
uint Lread, uiWA* WA, char* R... |
a152688ffce13341f3ef96901a21537c065d2d79de0e20b588ae0d670687eede | C/C++ | 540 | 23 | #ifndef INOUTSTREAMS_DEF
#define INOUTSTREAMS_DEF
#include "IncludeDefine.h"
#include SAMTOOLS_BGZF_H
class InOutStreams {
public:
ostream *logStdOut, *outSAM;
ofstream logStdOutFile, outSAMfile;
BGZF *outBAMfileUnsorted, *outBAMfileCoord, *outQuantBAMfile;
ofstream outChimSAM, outChimJunction, l... |
bb086a8ab9621e859469bcf4b04f68ee8ca408e5949cda8f8e2fc7722fc2f6a1 | C/C++ | 546 | 23 | #ifndef CODE_ChimericSegment
#define CODE_ChimericSegment
#include "IncludeDefine.h"
#include "Parameters.h"
#include "Transcript.h"
#include "ParametersChimeric.h"
class ChimericSegment
{//
public:
Parameters &P;
ParametersChimeric &pCh;
Transcript &align; //alignment
uint r... |
b8851135a68e54bd9df8319cef352aebb7bf7d9574878c6e5be67ec88f95a396 | C/C++ | 551 | 24 | #ifndef BASE_CORRECTOR_H
#define BASE_CORRECTOR_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include "overlapanalysis.h"
#include "filterresult.h"
#include "options.h"
using namespace std;
class BaseCorrector{
public:
BaseCorrector();
~BaseCorrector();
static int correctByOverlapAnalysis(... |
3349778aec8946f850e1906e486477bdb0f53f8ec9382024cca9a673b9717592 | C/C++ | 555 | 30 | #pragma once
using namespace System;
using namespace Thermo::Interfaces::ExactiveAccess_V1;
using namespace Thermo::Interfaces::InstrumentAccess_V1::Control::Scans;
namespace ManagedCppLoad
{
public ref class ApiUsageTest : IDisposable
{
private:
IExactiveInstrumentAccess^ m_instrument;
private:
Object^ Load... |
311e77d3f576e63fe335ff1a200bd750e523c0ec86a0a97803a0aec9377b6e7d | C/C++ | 556 | 30 | #ifndef H_Solo
#define H_Solo
#include "IncludeDefine.h"
#include "ReadAlignChunk.h"
#include "Transcriptome.h"
#include <fstream>
#include "SoloFeature.h"
class Solo {
private:
ReadAlignChunk **RAchunk;
Parameters &P;
Transcriptome &Trans;
public:
ParametersSolo &pSolo;
SoloFeature **soloFeat;
... |
57c134cd34bcc45b6b066fa7acd9cdf94ffe7865841e588494f21dff4f2efae9 | C/C++ | 573 | 28 | #pragma once
#include <plog/Util.h>
namespace plog
{
class UTF8Converter
{
public:
static std::string header(const util::nstring& str)
{
const char kBOM[] = "\xEF\xBB\xBF";
return std::string(kBOM) + convert(str);
}
#ifdef WIN32
stat... |
066d95754c44e26ef924aea109f534fb3e4b59608af836ae4729bf786f3884ee | C/C++ | 581 | 28 | #ifndef POLY_X_H
#define POLY_X_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include "overlapanalysis.h"
#include "filterresult.h"
#include "options.h"
using namespace std;
class PolyX{
public:
PolyX();
~PolyX();
static void trimPolyG(Read* r1, Read* r2, FilterResult* fr, int compareReq);... |
205973ca7c5aafa5ebeef7008a5de4833cec2300f74eb475e324965002eee0ca | C/C++ | 600 | 24 | #pragma once
using namespace System;
using namespace System::Threading;
using namespace Thermo::Interfaces::InstrumentAccess_V1::Control::Scans;
namespace ManagedCppLoad
{
// Event handler for setting a mutex on receiving an event of an IScans->PossibleParametersChanged.
// We set the event if and only if at least ... |
cd68425c1beadec2fadc37e1b144315b34b08abe236903f00209c042db64ad24 | C/C++ | 601 | 32 | #ifndef FILTER_H
#define FILTER_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include <vector>
#include "options.h"
#include "read.h"
using namespace std;
class Filter{
public:
Filter(Options* opt);
~Filter();
int passFilter(Read* r);
bool passLowComplexityFilter(Read* r);
Read* tri... |
4bd3710a1477118a3694ce4a204d0e0fb4ed160ba2fbd3be275ef0ede5481e9c | C/C++ | 605 | 21 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#if !defined(BOOST_PREDEF_LIBRARY_C_H) || defined(BOOST_PREDEF_INTERNAL_GENERATE_TESTS)
#ifndef BOOST_PREDEF_LIBRARY_C_H
#define BOOST... |
4be6910d936cd81a5f41bf126d5080a39a7a8cb15d4645e5c06a3b2f3e234ecb | C/C++ | 619 | 21 | #pragma once
#include <lsl_cpp.h>
struct Streampair {
lsl::stream_outlet out_;
lsl::stream_inlet in_;
Streampair(lsl::stream_outlet &&out, lsl::stream_inlet &&in)
: out_(std::move(out)), in_(std::move(in)) {}
};
static Streampair create_streampair(const lsl::stream_info &info) {
lsl::stream_outlet out(info);
... |
4de79db0d8cda758a3cbbf7b8f9527297e55deb79d623565a0e5c521c5b21685 | C/C++ | 621 | 37 | #ifndef CODE_ParametersClip
#define CODE_ParametersClip
#include "IncludeDefine.h"
#include "ClipMate.h"
#include "ClipCR4.h"
#include <array>
#include <vector>
class Parameters;
class ReadClipInput
{
public:
vector <uint32> N;
vector <uint32> NafterAd;
vector <string> adSeq;
vector <double> adMMp;
}... |
da35efec7008948ea7b22d97ed9a5f3e8d32df1e1aa04af9d7cfda49a8c6c6d7 | C/C++ | 627 | 25 | /**
* Copyright 2017-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <torch/extension.h>
torch::Tensor LevenshteinDistanceCuda(
torch::Tensor source,
torch::... |
3514ae569e99b8aaadd5d84e944edf5087848b8c2c03ae9f8cfd2c64672e9d98 | C/C++ | 628 | 40 | #ifndef NUCLEICTREE_H
#define NUCLEICTREE_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include <memory.h>
#include "options.h"
using namespace std;
// (A,T,C,G,N) & 0X07 = (1,4,7,6,3)
class NucleotideNode{
public:
NucleotideNode();
~NucleotideNode();
void dfs();
public:
int count;
... |
edd5ae86c93dac1feb35fd0527e4350658be43e55f6ea85e93576c63bbb48aa6 | C/C++ | 635 | 24 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#if !defined(BOOST_PREDEF_H) || defined(BOOST_PREDEF_INTERNAL_GENERATE_TESTS)
#ifndef BOOST_PREDEF_H
#define BOOST_PREDEF_H
#endif
#i... |
5f7d2bb2ea1eec942115271fa6ea5479740fecd2877672593aa9cbe739dd4efe | C/C++ | 651 | 12 | #ifndef H_SoloFeatureTypes
#define H_SoloFeatureTypes
namespace SoloFeatureTypes
{
// enum {Gene=0, GeneFull=1, SJ=2, Transcript3p=3, VelocytoSpliced=4, VelocytoUnspliced=5, VelocytoAmbiguous=6, N=7};
// const static vector<string> Names={"Gene","GeneFull","SJ","Transcript3p","VelocytoSpliced","VelocytoUnsplic... |
53e65c99034616a2eef12688ef1e4f1ee5565376fdbd09128cddc476345d8a3d | C/C++ | 660 | 36 | #pragma once
#ifndef STLNODE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define STLNODE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#include <vector>
#include <map>
namespace YAML
{
template <typename T>
void operator >> (const Node& node, std::vector<T>& v)
{
v.clear();
v.resize(node.size());
for(unsigned i=0;i<no... |
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