sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ced31fcfb3395c81bbd60e841e5b87bcf7a5c5175eb7282c44422f6ee254225f | C/C++ | 1,396 | 54 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_GCC_XML_H
#define BOOST_PREDEF_COMPILER_GCC_XML_H
#include <boost/predef/version_number.h>
#include <bo... |
6d9956f93de100c7ab48591eee2d0f5a4b2bdddb345898af54a7ea51931f862b | C/C++ | 1,400 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_KAI_H
#define BOOST_PREDEF_COMPILER_KAI_H
#include <boost/predef/version_number.h>
#include <boost/pred... |
d13d46c4c064ef9f13b765383a45a6b4adaa18d8472410efc444e44a1ff7a7fd | C/C++ | 1,400 | 56 | /*
Copyright Rene Rivera 2008-2021
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_ARCHITECTURE_X86_64_H
#define BOOST_PREDEF_ARCHITECTURE_X86_64_H
#include <boost/predef/version_number.h>
#inclu... |
68bc07a4400b1856295ee1b433c0d9f4cce53b71e2cbed36aba72c3facb1f71b | C/C++ | 1,401 | 53 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_TENDRA_H
#define BOOST_PREDEF_COMPILER_TENDRA_H
#include <boost/predef/version_number.h>
#include <boos... |
e28e96e7a18d0c22e4a70e472a1903ead9fae5c8e46365ee86de7c1345a215a6 | C/C++ | 1,403 | 56 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_PALM_H
#define BOOST_PREDEF_COMPILER_PALM_H
#include <boost/predef/version_number.h>
#include <boost/pr... |
6aa5bfb14d67cb44e1c19bef719dcb5deb4e42e4677b2963f837408a1e0b05f8 | C/C++ | 1,406 | 38 | #ifndef FASTP_SIMD_H
#define FASTP_SIMD_H
#include <cstddef>
namespace fastp_simd {
// Count quality metrics for a read in one pass.
// qualstr/seqstr: quality and sequence strings of length len.
// qualThreshold: phred+33 encoded quality threshold for "low quality".
// Outputs: lowQualNum, nBaseNum, totalQual (sum ... |
3dbb30b7d0c7ecdf8b41f9919f9d21aaf9f6552ebb2cac6d4545da4a5e9714f8 | C/C++ | 1,407 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_LIBRARY_C_ZOS_H
#define BOOST_PREDEF_LIBRARY_C_ZOS_H
#include <boost/predef/library/c/_prefix.h>
#include <boos... |
279b43c4d0ddaa1de9498bf8e899f6760a5d98c8ea8d6f81f157e163af620d0b | C/C++ | 1,409 | 49 | /*
Copyright (c) Microsoft Corporation 2014
Copyright Rene Rivera 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_PLAT_WINDOWS_PHONE_H
#define BOOST_PREDEF_PLAT_WINDOWS_PHONE_H
#include <boo... |
15b097ed4b10486856e028e0fb5bc68483384d4cb0a22444c557d26d32ea7c0e | C/C++ | 1,410 | 53 | #ifndef CODE_Variation
#define CODE_Variation
#include "IncludeDefine.h"
#include "Parameters.h"
#include <array>
// struct SNPnt
// {
// char ref;
// char a1;
// char a2;
// };
class SNP
{
public:
uint32 N; //number of snps
uint* loci; //snp coordinates
vector<uint> lociV; //snp coordinates ... |
3a542818d32894900c9afaac8ec55f2ccae9e81b82dc9accf880516d65e57cfc | C/C++ | 1,412 | 52 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_LIBRARY_STD_DINKUMWARE_H
#define BOOST_PREDEF_LIBRARY_STD_DINKUMWARE_H
#include <boost/predef/library/std/_prefi... |
969b7be2a930db0cdcb19b0e5b29ae6741f5a8f663b6dba6d647e12ec60cfa8e | C/C++ | 1,415 | 35 | /* puff.h
Copyright (C) 2002-2013 Mark Adler, all rights reserved
version 2.3, 21 Jan 2013
This software is provided 'as-is', without any express or implied
warranty. In no event will the author be held liable for any damages
arising from the use of this software.
Permission is granted to anyone to use t... |
0823973473a8181a068402e4b97376d3dd87efb3886b3258640291234711549f | C/C++ | 1,416 | 73 | #ifndef READ_H
#define READ_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include <iostream>
#include <fstream>
#include "sequence.h"
#include <vector>
using namespace std;
class Read{
public:
Read(string* name, string* seq, string* strand, string* quality, bool phred64=false);
Read(const char* na... |
14384d8ab801af4ef8ab3da0581c171d5104f44f7d7fa9639b8b99df32055ce9 | C/C++ | 1,420 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_IAR_H
#define BOOST_PREDEF_COMPILER_IAR_H
#include <boost/predef/version_number.h>
#include <boost/pred... |
1615321b52f7b819a41f3760c40d60ecc4ffa83ee567e81712ff7d73f4915a9c | C/C++ | 1,428 | 54 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_TENDRA_H
#define BOOST_PREDEF_COMPILER_TENDRA_H
#include <boost/predef/version_number.h>
#include <boos... |
7fe24bd47fb88c34a9940fe902ca9fef4d8d29081a982406fc55dfc7f261625b | C/C++ | 1,428 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_PALM_H
#define BOOST_PREDEF_COMPILER_PALM_H
#include <boost/predef/version_number.h>
#include <boost/pr... |
fbbe0abc286b03f3895290dac871fef56081cc1b2e84990781783ca55dc06c84 | C/C++ | 1,428 | 89 | /*
* bayesnet.h
* peer
*
* Created by Leopold Parts on 03/11/2010.
* Copyright 2010 __MyCompanyName__. All rights reserved.
*
*/
#ifndef __BAYESNET_H__
#define __BAYESNET_H__
#include "Eigen/Eigen"
#include "array_helper.h"
#include <iostream>
using namespace std;
using namespace Eigen;
enum intialisatio... |
a3ee46dbb9957217e1d43d024de4a45f5b42459066c0a819e3016ecbea3c9160 | C/C++ | 1,431 | 49 | #ifndef __KFUNC_H__
#define __KFUNC_H__
/* Log gamma function
* \log{\Gamma(z)}
* AS245, 2nd algorithm, http://lib.stat.cmu.edu/apstat/245
*/
double kf_lgamma(double z);
/* complementary error function
* \frac{2}{\sqrt{\pi}} \int_x^{\infty} e^{-t^2} dt
* AS66, 2nd algorithm, http://lib.stat.cmu.edu/apstat/66
*/... |
b0d3d6a2355e3fa89434dca39e3ee353c419f9f955b3ef55e561ef4488ca18ce | C/C++ | 1,431 | 53 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_LIBRARY_STD_DINKUMWARE_H
#define BOOST_PREDEF_LIBRARY_STD_DINKUMWARE_H
#include <boost/predef/library/std/_prefi... |
ad003d0ac3eadc9388d0905151233068cd8831137c1585d9e0b00d0bf360cc89 | C/C++ | 1,437 | 56 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_DIGITALMARS_H
#define BOOST_PREDEF_COMPILER_DIGITALMARS_H
#include <boost/predef/version_number.h>
#inc... |
e618f51e321a267d6079205693fb1933dba55f2a9931e21b00f8bf7e0a64f8ec | C/C++ | 1,438 | 56 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_LIBRARY_STD_ROGUEWAVE_H
#define BOOST_PREDEF_LIBRARY_STD_ROGUEWAVE_H
#include <boost/predef/library/std/_prefix.... |
59bef055d576455894ffa7cb47cb171c9c33ccbb302a53a57d060f2727eaec60 | C/C++ | 1,439 | 59 | #ifndef SE_PROCESSOR_H
#define SE_PROCESSOR_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include "read.h"
#include <cstdlib>
#include <condition_variable>
#include <mutex>
#include <thread>
#include "options.h"
#include "threadconfig.h"
#include "filter.h"
#include "umiprocessor.h"
#include "writerthrea... |
fecad0d852c77621ed8f0c9f62b6cc7ec3569f6b99042ac11361a576e6dbd168 | C/C++ | 1,448 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_LLVM_H
#define BOOST_PREDEF_COMPILER_LLVM_H
/* Other compilers that emulate this one need to be detecte... |
4e04c9a1a4f88472110512c86f175873197653f98820aedf71d0239f766a6557 | C/C++ | 1,452 | 56 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_EDG_H
#define BOOST_PREDEF_COMPILER_EDG_H
#include <boost/predef/version_number.h>
#include <boost/pred... |
2761ec7cd1ad145c59dfba1a0ebacd6e6db927452aec6880c73095db301706e3 | C/C++ | 1,455 | 56 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_DIGNUS_H
#define BOOST_PREDEF_COMPILER_DIGNUS_H
#include <boost/predef/version_number.h>
#include <boos... |
8df31aa85df9878016497cb12e25a3ada3c4b2bf2dd5961f0d03731caac946af | C/C++ | 1,455 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_LIBRARY_STD_ROGUEWAVE_H
#define BOOST_PREDEF_LIBRARY_STD_ROGUEWAVE_H
#include <boost/predef/library/std/_prefix.... |
ed1cd440c46f05ece6e7e40de438a5da594a337be4aeffd87b49b831c7b4d049 | C/C++ | 1,458 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_DIGITALMARS_H
#define BOOST_PREDEF_COMPILER_DIGITALMARS_H
#include <boost/predef/version_number.h>
#inc... |
16d4d2f250c59f272a1717b849693d6356ebb94dd2c07703c668a4dbec47cc21 | C/C++ | 1,470 | 52 | #ifndef TBX_H
#define TBX_H
#include "hts.h"
#define TBX_MAX_SHIFT 31
#define TBX_GENERIC 0
#define TBX_SAM 1
#define TBX_VCF 2
#define TBX_UCSC 0x10000
typedef struct {
int32_t preset;
int32_t sc, bc, ec; // seq col., beg col. and end col.
int32_t meta_char, line_skip;
} tbx_conf_t;
typedef struct {... |
1ca86d25f307a4a51363f6f48ae49f79782d18ece243396184f1ba854cd2d714 | C/C++ | 1,473 | 58 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_LLVM_H
#define BOOST_PREDEF_COMPILER_LLVM_H
/* Other compilers that emulate this one need to be detecte... |
4b96ea94dde9b8791a3b8a5948adb2941a809fee86492e7225d974819b2eef81 | C/C++ | 1,475 | 56 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_WATCOM_H
#define BOOST_PREDEF_COMPILER_WATCOM_H
#include <boost/predef/version_number.h>
#include <boos... |
d94a822072767f7a893d8cddce6cdc899688ed37f2850d2912f69f57d6947232 | C/C++ | 1,475 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_EDG_H
#define BOOST_PREDEF_COMPILER_EDG_H
#include <boost/predef/version_number.h>
#include <boost/pred... |
600238cfad9aef15773476a73fae1cb6a378ac6a04730ccf71f3724762d3e7f4 | C/C++ | 1,478 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_DIGNUS_H
#define BOOST_PREDEF_COMPILER_DIGNUS_H
#include <boost/predef/version_number.h>
#include <boos... |
968775590bc37f3f73174a48d14a3a8289ae4801db47a1d24a7260a4b6b70825 | C/C++ | 1,479 | 46 | #ifndef H_SoloReadBarcode
#define H_SoloReadBarcode
#include <set>
#include "IncludeDefine.h"
#include "Parameters.h"
#include "SoloReadBarcodeStats.h"
class SoloReadBarcode {
private:
Parameters &P;
public:
ParametersSolo &pSolo;
uint32 homoPolymer[4];//homopolymer constants
string cbSe... |
b48b94d9a3274588cc0d1b1fbe1cca840ca6e70633857212617f676166dd06ec | C/C++ | 1,479 | 54 | #ifdef __cplusplus
extern "C" {
#endif
/*
* This is an OpenSSL-compatible implementation of the RSA Data Security, Inc.
* MD5 Message-Digest Algorithm (RFC 1321).
*
* Homepage:
* http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5
*
* Author:
* Alexander Peslyak, better known as Solar... |
f5472208e050d66596e1bf96f14d8792906ce6f080a1ce74ebe863713bcb405a | C/C++ | 1,489 | 56 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_DIAB_H
#define BOOST_PREDEF_COMPILER_DIAB_H
#include <boost/predef/version_number.h>
#include <boost/pr... |
caad7121b0552c74ff1fdd80837e7d0d2096e45498a75dfd777dcb869883e7c4 | C/C++ | 1,491 | 61 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_LIBRARY_C_GNU_H
#define BOOST_PREDEF_LIBRARY_C_GNU_H
#include <boost/predef/version_number.h>
#include <boost/pr... |
95c0de173c2a9e4a23002f456b060f349baf2f3a251fd659aa287a6393171ee0 | C/C++ | 1,492 | 63 | #ifndef CODE_ParametersGenome
#define CODE_ParametersGenome
#include "IncludeDefine.h"
#include <unordered_set>
class Parameters;
class ParametersGenome {//"constant" genome parameters - user input
public:
string gDir;
string gLoad;
uint32 gType;//type code
string gTypeString;
vector <s... |
81ba96c6cfa024cfb4dd7604500b87334abfa04a462bb3cd8189b1e5da3b384e | C/C++ | 1,495 | 38 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010-2011 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
3e78062c4646fd1b9ff7310fffc412f372fd4f334362556deab7501801906c23 | C/C++ | 1,498 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_WATCOM_H
#define BOOST_PREDEF_COMPILER_WATCOM_H
#include <boost/predef/version_number.h>
#include <boos... |
ede44ea47cdc0e6665f31807324a0794e90af584e280d7a74083912ea3b06991 | C/C++ | 1,503 | 82 | #pragma once
#ifndef TOKEN_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define TOKEN_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#include "mark.h"
#include <ios>
#include <string>
#include <vector>
namespace YAML
{
const std::string TokenNames[] = {
"DIRECTIVE",
"DOC_START",
"DOC_END",
"BLOCK_SEQ_START",
"BLOCK_MA... |
7127aef714fd409b2064a0aae7344b4ed97d58bd1328628eebf3e2eaab9159f5 | C/C++ | 1,506 | 56 | /*
Copyright Charly Chevalier 2015
Copyright Joel Falcou 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_HARDWARE_SIMD_X86_AMD_VERSIONS_H
#define BOOST_PREDEF_HARDWARE_SIMD_X86_AMD_VERSIONS_H... |
daee5122dc6d530a702eb7071797f25532732e54068634d20bafa21fa30d2795 | C/C++ | 1,506 | 62 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_LIBRARY_C_GNU_H
#define BOOST_PREDEF_LIBRARY_C_GNU_H
#include <boost/predef/version_number.h>
#include <boost/pr... |
1419926cf0b3ca0150b08968d69ee513b64cdb5ccb347e6841297c0c1e2f05ff | C/C++ | 1,507 | 59 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_OS_QNXNTO_H
#define BOOST_PREDEF_OS_QNXNTO_H
#include <boost/predef/version_number.h>
#include <boost/predef/mak... |
d9b7dbb3bda494570a1590d2fccc60795726a35444fb71272a1ef3a828712095 | C/C++ | 1,512 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_DIAB_H
#define BOOST_PREDEF_COMPILER_DIAB_H
#include <boost/predef/version_number.h>
#include <boost/pr... |
ad59e56f9f3e063d464cf75ca1c81268c73e9f62f0c22a11f2fd33ddccbb096f | C/C++ | 1,518 | 60 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_OS_QNXNTO_H
#define BOOST_PREDEF_OS_QNXNTO_H
#include <boost/predef/version_number.h>
#include <boost/predef/mak... |
ec5029ae0b7e7ca5798525b836b42ac93b7d3ef99d6f134a36fd6495c75ce16a | C/C++ | 1,519 | 41 | #ifndef STATS_DEF
#define STATS_DEF
#include "IncludeDefine.h"
#include "Transcript.h"
#include "Parameters.h"
class Stats {
public:
uint readN;//number of reads from the file
uint readBases;//number of input bases
// uint mateLmax[2], mateLmin[2];//mates' max and min length
uint... |
8a8ec5563637e49d752f1725432fd556caba4083e1fd4bbb2f0566f457550eb5 | C/C++ | 1,525 | 49 | #ifndef CODE_ReadAlignChunk
#define CODE_ReadAlignChunk
#include "IncludeDefine.h"
#include "Parameters.h"
#include "ReadAlign.h"
#include "OutSJ.h"
#include "Transcriptome.h"
#include "BAMoutput.h"
#include "Quantifications.h"
class ReadAlignChunk {//chunk of reads and alignments
public:
Parameters& P;
ReadA... |
e72e4d975969548a82795fe909c516b88fbfda9f2f12cb0696d9012d5c61f216 | C/C++ | 1,532 | 56 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_CLANG_H
#define BOOST_PREDEF_COMPILER_CLANG_H
#include <boost/predef/version_number.h>
#include <boost/... |
32977c70faba88d87b4b04b6e655270f3503b6400cdd14794869c422c253d2af | C/C++ | 1,534 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_EKOPATH_H
#define BOOST_PREDEF_COMPILER_EKOPATH_H
#include <boost/predef/version_number.h>
#include <bo... |
56e67ee1cac330e18261465fc3d2e649113390bb263353cd08931cd5b39b61e3 | C/C++ | 1,537 | 51 | #ifndef HTML_REPORTER_H
#define HTML_REPORTER_H
#include <iostream>
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include "options.h"
#include "stats.h"
#include "filterresult.h"
#include <fstream>
#include <atomic>
#include "common.h"
#include "util.h"
using namespace std;
class HtmlReporter{
public:
... |
01aa67abf07a8324216945b896c7e38f26c4272f1f35065343d758dbb3d0dcd3 | C/C++ | 1,538 | 50 | /*
Copyright (c) Microsoft Corporation 2014
Copyright Rene Rivera 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_PLAT_WINDOWS_STORE_H
#define BOOST_PREDEF_PLAT_WINDOWS_STORE_H
#include <boo... |
66f975beb0e6c9d72ca57a2957fe3601e691859e097cae91188d6932a07ec677 | C/C++ | 1,539 | 32 | /** general basic functions to operate on sequences, no classes
*/
#ifndef SEQUENCEFUNS_DEF
#define SEQUENCEFUNS_DEF
#include "IncludeDefine.h"
void complementSeqNumbers(char*, char*, uint);
void convertNucleotidesToNumbers(const char* R0, char* R1, const uint Lread);
uint convertNucleotidesToNumbersRemoveControls... |
6904bea9c5e5743f3c1c60e983f6f96efa5a2222ada4aaf6f319942a0b3f9bcc | C/C++ | 1,555 | 57 | #pragma once
#ifndef CONTENT_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define CONTENT_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#include <vector>
#include <map>
#include "parserstate.h"
#include "exceptions.h"
#include "ltnode.h"
namespace YAML
{
class Scanner;
class Parser;
class Node;
class Scalar;
class Sequence... |
c64401b45992838dd26653a6b6d469092c76ff5e7e724e859377f5004683f4d8 | C/C++ | 1,556 | 41 | // (C) Copyright 2018, Nanbo Sun (nanbosun@u.nus.edu)
// This file is part of MMLDA-C.
// MMLDA-C is free software; you can redistribute it and/or modify it under
// the terms of the GNU General Public License as published by the Free
// Software Foundation; either version 2 of the License, or (at your
// option) any... |
288327505fb3a175ea21ede7e6f42c157b6b70e682480f3a2efec1da85147343 | C/C++ | 1,557 | 51 | /*
Copyright (c) Microsoft Corporation 2014
Copyright Rene Rivera 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_PLAT_WINDOWS_STORE_H
#define BOOST_PREDEF_PLAT_WINDOWS_STORE_H
#include <boo... |
6e8a611643d72192a003fe2cdd1a62677340d03903805139339dc065b71970f2 | C/C++ | 1,557 | 57 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_CLANG_H
#define BOOST_PREDEF_COMPILER_CLANG_H
#include <boost/predef/version_number.h>
#include <boost/... |
de58cf487ec32ac3e5bfed8669ed590893e8b4425647a820d4ce3a58c6c6eea8 | C/C++ | 1,558 | 49 | #ifndef H_SoloReadFeatureStats
#define H_SoloReadFeatureStats
#include "IncludeDefine.h"
class SoloReadFeatureStats {
public:
vector<string> names;
enum { noUnmapped, noNoFeature, MultiFeature, subMultiFeatureMultiGenomic, noTooManyWLmatches, noMMtoWLwithoutExact, yesWLmatch, yessubWLmatchExact, y... |
f367fc099b0b49f36dd77736de8ee9f617fd50d4b3e577dc4183c979e6f75e5b | C/C++ | 1,559 | 58 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_EKOPATH_H
#define BOOST_PREDEF_COMPILER_EKOPATH_H
#include <boost/predef/version_number.h>
#include <bo... |
8bea95168e9bf4d69e2cfbd78cfbea207bf4c89f88e33b9514dbf9d7844605e5 | C/C++ | 1,562 | 61 | /**
* Copyright (c) 2016-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <cstdint>
#include <istream>
#include <ostream>
#include <memory>
#include <vector>
#in... |
7fbbbc91c25fcd42dbbd374cf247f4085f483ec5cd65ddcdb68eaa9244b59beb | C/C++ | 1,576 | 51 | /*
Copyright (c) Microsoft Corporation 2014
Copyright Rene Rivera 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_PLAT_WINDOWS_DESKTOP_H
#define BOOST_PREDEF_PLAT_WINDOWS_DESKTOP_H
#include ... |
c60630a0024845aef8cc778e18684e77195f90bc7ecc9c7918ce28c21b211099 | C/C++ | 1,582 | 59 | #ifndef CODE_OutSJ
#define CODE_OutSJ
#include "Parameters.h"
#include "Genome.h"
class Junction {//one junction
public:
const static uint startP=0;
const static uint gapP=startP+sizeof(uint);
const static uint strandP=gapP+sizeof(uint32);
const static uint motifP=strandP+sizeof(char);
const stati... |
1a4be41710e08abd9dc5f1e89ed1edcd0207459e3af8c1eddb1c3ba1bfa6d84c | C/C++ | 1,591 | 52 | /*
Copyright (c) Microsoft Corporation 2014
Copyright Rene Rivera 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_PLAT_WINDOWS_DESKTOP_H
#define BOOST_PREDEF_PLAT_WINDOWS_DESKTOP_H
#include ... |
290a5bb530f190bdc72920a417a026823c113a69deee4c54021080bdc42d9d7a | C/C++ | 1,591 | 43 | // (C) Copyright 2018, Nanbo Sun (nanbosun@u.nus.edu)
// This file is part of MMLDA-C.
// MMLDA-C is free software; you can redistribute it and/or modify it under
// the terms of the GNU General Public License as published by the Free
// Software Foundation; either version 2 of the License, or (at your
// option) any... |
dda2302f28157fe43a6143f84802af1740393572c2766559593996fd7a5a3245 | C/C++ | 1,594 | 37 | /* infback9.h -- header for using inflateBack9 functions
* Copyright (C) 2003 Mark Adler
* For conditions of distribution and use, see copyright notice in zlib.h
*/
/*
* This header file and associated patches provide a decoder for PKWare's
* undocumented deflate64 compression method (method 9). Use with infback... |
07b2d58edc4546501ea99d62c3725a7f8cc5d03816b112bb2995a16d4eb8b7ec | C/C++ | 1,607 | 63 | /**
* Copyright (c) 2016-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <cstring>
#include <istream>
#include <ostream>
#include <random>
#include <vector>
#inc... |
920fa053ed5d7937c6e82f7c208791540203ea11856ba38b5a6fdf7636e559a3 | C/C++ | 1,608 | 44 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#if !defined(BOOST_PREDEF_COMPILER_H) || defined(BOOST_PREDEF_INTERNAL_GENERATE_TESTS)
#ifndef BOOST_PREDEF_COMPILER_H
#define BOOST_P... |
c874934128c551fc0bc9bbe65d4605cf537780ac088c458687b572fd4eec42e7 | C/C++ | 1,612 | 75 | #ifndef KNETFILE_H
#define KNETFILE_H
#include <stdint.h>
#include <fcntl.h>
#ifndef _WIN32
#define netread(fd, ptr, len) read(fd, ptr, len)
#define netwrite(fd, ptr, len) write(fd, ptr, len)
#define netclose(fd) close(fd)
#else
#include <winsock2.h>
#define netread(fd, ptr, len) recv(fd, ptr, len, 0)
#define netwrit... |
ed8a9ff8e0317ab05f29c4094536ad8a8174e8ad6d024cf08a7e99eb04ea2209 | C/C++ | 1,614 | 61 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_HP_ACC_H
#define BOOST_PREDEF_COMPILER_HP_ACC_H
#include <boost/predef/version_number.h>
#include <boos... |
7902e87c43695f79fe5a20b197e1ee93d7749a1612470e0deffcdcb28aad3653 | C/C++ | 1,618 | 59 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_ARCHITECTURE_ALPHA_H
#define BOOST_PREDEF_ARCHITECTURE_ALPHA_H
#include <boost/predef/version_number.h>
#include... |
c65fdd0e08f6b373a44f85dda2c6f7b3c6998beda4cca0e566d2c4969eb4e533 | C/C++ | 1,626 | 73 |
#ifndef BTL_C_INTERFACE_BASE_H
#define BTL_C_INTERFACE_BASE_H
#include "utilities.h"
#include <vector>
template<class real> class c_interface_base
{
public:
typedef real real_type;
typedef std::vector<real> stl_vector;
typedef std::vector<stl_vector > stl_matrix;
typedef real... |
d8e283572134656706e97144d1f8a975edbc802adc9248901315e20f3a2fdbc5 | C/C++ | 1,631 | 60 | #pragma once
#ifndef NODEUTIL_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define NODEUTIL_H_62B23520_7C8E_11DE_8A39_0800200C9A66
namespace YAML
{
template <typename T, typename U>
struct is_same_type {
enum { value = false };
};
template <typename T>
struct is_same_type<T, T> {
enum { value = true };
};
t... |
6531cbd137d9e2a9210b9db83fbeb9f252105bca9935661690fc379b40c2c20d | C/C++ | 1,633 | 45 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
ba9436c5a1cc65d51d43be882730f56f8fd7213a1e71fa9f93ef076f2139dc14 | C/C++ | 1,634 | 61 | /*
Copyright Charly Chevalier 2015
Copyright Joel Falcou 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_HARDWARE_SIMD_ARM_H
#define BOOST_PREDEF_HARDWARE_SIMD_ARM_H
#include <boost/predef/v... |
5c5703cb5bad0fd30646cdcc7e059a6caa14de4ab73d0c8031b64e848ab5beb1 | C/C++ | 1,638 | 67 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_ARCHITECTURE_RS6K_H
#define BOOST_PREDEF_ARCHITECTURE_RS6K_H
#include <boost/predef/version_number.h>
#include <... |
9c36017a2b1e8c1d2418816468c56a2c1f89974beeb2d7aa5314b7ac300895c4 | C/C++ | 1,639 | 62 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_HP_ACC_H
#define BOOST_PREDEF_COMPILER_HP_ACC_H
#include <boost/predef/version_number.h>
#include <boos... |
90db90b7f40dc8f6a9505da4f2637f5a8cf85a94a2075277cf83e552358184b9 | C/C++ | 1,648 | 68 | #ifndef WRITER_THREAD_H
#define WRITER_THREAD_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include <vector>
#include "writer.h"
#include "options.h"
#include <atomic>
#include <mutex>
#include <libdeflate.h>
#include "singleproducersingleconsumerlist.h"
using namespace std;
static constexpr int OFFSET... |
4c9d97b39786abb7142444cf4cbb045d95d0259d4b5d860277b2c1d10f6f9e01 | C/C++ | 1,650 | 53 | /*
Copyright (c) Microsoft Corporation 2014
Copyright Rene Rivera 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_PLAT_WINDOWS_RUNTIME_H
#define BOOST_PREDEF_PLAT_WINDOWS_RUNTIME_H
#include ... |
824e1ae030db998b529773cd9411928288b7b74a27af34b58c96ba19579f93ff | C/C++ | 1,652 | 59 | /*
Copyright Charly Chevalier 2015
Copyright Joel Falcou 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_HARDWARE_SIMD_ARM_H
#define BOOST_PREDEF_HARDWARE_SIMD_ARM_H
#include <boost/predef/v... |
01e34cc8ff247ad1a8033a1d736beca0698b541dc996971ca6d56109b6ba95aa | C/C++ | 1,653 | 48 | /*
IMPORTANT! This file is auto-generated each time you save your
project - if you alter its contents, your changes may be overwritten!
This is the header file that your files should include in order to get all the
JUCE library headers. You should avoid including the JUCE headers directly in
... |
86000759f930d4ae0a2b1ab1f87643398280f8ff1361b1bffef1d7d941a08603 | C/C++ | 1,655 | 47 | #ifndef H_ReadAnnotations
#define H_ReadAnnotations
#include "IncludeDefine.h"
#include "SoloCommon.h"
#include "SoloFeatureTypes.h"
class ReadAnnotFeature {//annotations for one feature
public:
set<uint32> fSet; //set of genes for this read
vector<set<uint32>> fAlign; //gene for each alignment of this read
... |
ba0723cffbde74d492a5056e91685344d826204db2c31c245649f21eddbf61ef | C/C++ | 1,662 | 58 | /*
* Created by Fahimeh Mirhaj on 6/14/19.
*/
#ifndef H_SpliceGraph
#define H_SpliceGraph
#include "GTF.h"
#include "Transcript.h"
class ReadAlign;
class SpliceGraph {
public:
typedef int32 typeAlignScore;
typedef uint32 typeSeqLen;
SuperTranscriptome &superTrome;
//vector<array<typeSeqLen... |
1d2cfc5d31b1e1d39bae6924fed8bb667bc9444d59e2b5e9b5bde0f804ecc1c4 | C/C++ | 1,664 | 45 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// Licens... |
c0a723dcefd245bfed431f26fe608e4d571f9f19712027876dab9157d2cb53ce | C/C++ | 1,665 | 54 | /*
Copyright (c) Microsoft Corporation 2014
Copyright Rene Rivera 2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_PLAT_WINDOWS_RUNTIME_H
#define BOOST_PREDEF_PLAT_WINDOWS_RUNTIME_H
#include ... |
64f3dbf84240e1903c7a81c5f50193e1eb417af808cd5dab24821e0d0d665904 | C/C++ | 1,669 | 63 |
#ifndef EIGEN_BENCH_BASICBENCH_H
#define EIGEN_BENCH_BASICBENCH_H
enum {LazyEval, EarlyEval, OmpEval};
template<int Mode, typename MatrixType>
void benchBasic_loop(const MatrixType& I, MatrixType& m, int iterations) __attribute__((noinline));
template<int Mode, typename MatrixType>
void benchBasic_loop(const Matrix... |
572b9c80e406f6dd78dac2d1cd1ddcbde201c173290f52a714317edbabe45526 | C/C++ | 1,674 | 61 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_COMEAU_H
#define BOOST_PREDEF_COMPILER_COMEAU_H
#include <boost/predef/version_number.h>
#include <boos... |
7933dd6e3422f9892994924f9817681e03025152d8bfcbf3fc81fc947f26bbcc | C/C++ | 1,679 | 50 | #pragma once
#ifndef TRAITS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define TRAITS_H_62B23520_7C8E_11DE_8A39_0800200C9A66
namespace YAML
{
template <typename>
struct is_numeric { enum { value = false }; };
template <> struct is_numeric <char> { enum { value = true }; };
template <> struct is_numeric <unsigned ch... |
34f6a07cf90232de7322949beb89a8f9dbcc1b66f4acb40cc25464553d77374f | C/C++ | 1,689 | 44 | // (C) Copyright 2018, Nanbo Sun (nanbosun@u.nus.edu), Xiuming Zhang
// This file is part of POLARLDA-C.
// POLARLDA-C is free software; you can redistribute it and/or modify it under
// the terms of the GNU General Public License as published by the Free
// Software Foundation; either version 2 of the License, or (a... |
055363ebcd7b563ed59b6a2bb5253daf6d6c0ab6a3cd2c352c33288d278dfa2b | C/C++ | 1,697 | 62 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_COMEAU_H
#define BOOST_PREDEF_COMPILER_COMEAU_H
#include <boost/predef/version_number.h>
#include <boos... |
cba3904d5beed476bab3c3410918352e2ba85a2a928c5097dc90eff2b7bd10b3 | C/C++ | 1,707 | 57 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
9d4fe1f89a8dc1c7e3f152a892b9d27cd288df4aa27a024116927146323e751a | C/C++ | 1,713 | 67 | //===----------------------------------------------------------------------===//
//
// The LLVM Compiler Infrastructure
//
// This file is dual licensed under the MIT and the University of Illinois Open
// Source Licenses. See LICENSE.TXT for details.
//
//===----------------------------------------... |
d66e9a0cb1bee9c1e74c25d738ce1ddba927380f98cc22da81eab4486f280c12 | C/C++ | 1,720 | 79 | /**
* Copyright (c) 2016-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include <memory>
#include <random>
#include <utility>
#include <vector>
#include "matrix.h"
#inc... |
774a944741f47b4b84d13cf915727b8ba3177683037873a7fd1d97e02fd63656 | C/C++ | 1,721 | 62 |
/******************************************************************************
*
* file: OptionalUnlabeledTracker.h
*
* Copyright (c) 2005, Michael E. Smoot .
* All rights reverved.
*
* See the file COPYING in the top directory of this distribution for
* more information.
*
* THE SOFTWARE IS P... |
fa0145fdd5e3ddf63ad03b1c6dc5b049d8a59b8dfb6d33f2655bd441b924d59d | C/C++ | 1,721 | 60 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_PGI_H
#define BOOST_PREDEF_COMPILER_PGI_H
#include <boost/predef/version_number.h>
#include <boost/pred... |
4277eefdcef61c83dad25af674f6f194fdacefd964fd171d7bfabd03b6ce3c1e | C/C++ | 1,722 | 47 | /* hts_defs.h -- Miscellaneous definitions.
Copyright (C) 2013-2014 Genome Research Ltd.
Author: John Marshall <jm18@sanger.ac.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software withou... |
d20f782981630dc077b1402b3d7b58ae549edb3c6c6d1c79acc67f601fccc709 | C/C++ | 1,722 | 72 | /**
* Copyright (c) 2016-present, Facebook, Inc.
* All rights reserved.
*
* This source code is licensed under the MIT license found in the
* LICENSE file in the root directory of this source tree.
*/
#pragma once
#include "real.h"
#include <algorithm>
#include <chrono>
#include <fstream>
#include <ostream>
#i... |
8b1bd1eb4f2b40c038f6c7b3b81928576a266be5707338ad7f245250455dd6e0 | C/C++ | 1,729 | 66 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_OS_AIX_H
#define BOOST_PREDEF_OS_AIX_H
#include <boost/predef/version_number.h>
#include <boost/predef/make.h>
... |
776c46da5489710798a3aeab8dd22226a00e38fe9387317d90c4673b331bb61e | C/C++ | 1,732 | 41 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
9362de7ab74df9ffdd1bfb8af9318afabfe1d2888b1dd9edd74679e302f60ae0 | C/C++ | 1,732 | 67 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_OS_AIX_H
#define BOOST_PREDEF_OS_AIX_H
#include <boost/predef/version_number.h>
#include <boost/predef/make.h>
... |
bdab1e854e82697ee9173b7d024dff9fbf22349a1591a733e3e90730d289f7f9 | C/C++ | 1,738 | 57 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// Licens... |
f1d002de614326952d45d9e9fc3ebc5c67f4dbc1da37f9d8053bc21d4ee568e4 | C/C++ | 1,740 | 73 | #pragma once
#include <vector>
#include <plog/Appenders/IAppender.h>
#include <plog/Util.h>
#ifndef PLOG_DEFAULT_INSTANCE
# define PLOG_DEFAULT_INSTANCE 0
#endif
namespace plog
{
template<int instance>
class Logger : public util::Singleton<Logger<instance> >, public IAppender
{
public:
... |
d7aa16fe06f0757170d7c69f1082c3852d442fb0f05269e44d69c45f9ba896e0 | C/C++ | 1,747 | 63 | /*
Copyright Rene Rivera 2008-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_COMPILER_MPW_H
#define BOOST_PREDEF_COMPILER_MPW_H
#include <boost/predef/version_number.h>
#include <boost/pred... |
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