sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
b226ca5493cd07e4c8784f1211d11f812f4d0ec4b64e6f57059834a22997f453 | C/C++ | 7,755 | 215 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
d98b3dd2f6ffc7782eadd02fd8931849ad7a225eb2a60a8727a90986c2270d7b | C/C++ | 7,759 | 212 | #ifndef INLET_CONNECTION_H
#define INLET_CONNECTION_H
#include "cancellation.h"
#include "resolver_impl.h"
#include "stream_info_impl.h"
#include <asio/ip/tcp.hpp>
#include <asio/ip/udp.hpp>
#include <atomic>
#include <condition_variable>
#include <map>
#include <mutex>
#include <string>
#include <thread>
/* shared_m... |
3be9fb41a8a1efb1aeff3b39bf2696c962cb9d1938e0b085581cd43d7b1fbf00 | C/C++ | 7,760 | 208 | #ifndef INLET_CONNECTION_H
#define INLET_CONNECTION_H
#include "cancellation.h"
#include "resolver_impl.h"
#include <boost/asio/ip/tcp.hpp>
#include <boost/asio/ip/udp.hpp>
#include <condition_variable>
#include <map>
#include <thread>
/* shared_mutex was added in C++17 so we use the boost shared_mutex when
building ... |
0325e85d481da00a76447ddc18611b37a41ca527b21324757999fec03a3c64a9 | C/C++ | 7,785 | 183 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2007-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
a9882687c817afd455f434f1616b926c4d643cd9b74f7b17fc604482afe3173e | C/C++ | 7,791 | 201 | #ifndef RESOLVER_IMPL_H
#define RESOLVER_IMPL_H
#include "cancellation.h"
#include "common.h"
#include "forward.h"
#include "stream_info_impl.h"
#include <asio/ip/tcp.hpp>
#include <asio/ip/udp.hpp>
#include <asio/steady_timer.hpp>
#include <atomic>
#include <map>
#include <memory>
#include <mutex>
#include <string>
#... |
976db6860ff2c8f4dcbfd3f970d559b83204fe30ab6ff0d714255e659e02f642 | C/C++ | 7,815 | 251 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
3402671901b03da308db7d2778a6226f0da0e6ebb1af25f5bcbc5bc6ba8a04c3 | C/C++ | 7,843 | 195 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
5e74ef98b9c80d01fec0c587fbbd779c4fc8da6babdce90126e3b9e0ec42a82e | C/C++ | 7,865 | 205 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
e6c31f8b8e50e6a4de10c4bac007116bdc0a76105920d01d597d19361c4848d1 | C/C++ | 7,882 | 229 | #pragma once
//! @file common.h Global constants for liblsl
#if defined(LIBLSL_FFI)
// Skip any typedefs that might confuse a FFI header parser, e.g. cffi
#elif defined(_MSC_VER) && _MSC_VER < 1600
typedef signed char int8_t;
typedef signed short int16_t;
typedef signed int int32_t;
typedef signed long long int64_t;
... |
43d5ca21ce17aa27817a3552a9a88cdbe61317a8cfbc6fadde2ff2b3bc4e4479 | C/C++ | 7,919 | 217 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
cfca98596aee1aaa120adae4d431a2520e2f3130e5d2b899048cdbf323c2f760 | C/C++ | 7,931 | 321 | // -*- Mode: c++; c-basic-offset: 4; tab-width: 4; -*-
/******************************************************************************
*
* file: ZshCompletionOutput.h
*
* Copyright (c) 2006, Oliver Kiddle
* All rights reverved.
*
* See the file COPYING in the top directory of this distribution for
* ... |
8fa7fea0b8ce7f6afabbe934544a797b596c789aff9b3a0b58b628435d9ee1f5 | C/C++ | 7,941 | 222 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
b9a98d5cf3ed1d737de7a2e98d73d932c7ba5fcaab9fe4e07bad01d5152a4c77 | C/C++ | 7,944 | 222 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// Licens... |
c5b1696907412c7c77bcb9fb5136e35552fb7053db61d890fc444fa6c690a0b0 | C/C++ | 7,949 | 233 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
f131464c2ed5bd6a07809be256fcb6a416731f14224a2da526622261ad32cc7a | C/C++ | 7,953 | 329 | /*
* Copyright 1996-2006 Catherine Loader.
*/
#ifndef I_LOCF_H
#define I_LOCF_H
#include "stdlib.h"
#include "ctype.h"
#include "mut.h"
#ifdef WARN
#undef WARN
#endif
#define LERR(args) {mut_printf("Error: "); mut_printf args; mut_printf("\n"); lf_error=1;}
#define WARN(args) {mut_printf("Warning: "); mut_printf ... |
65aecba7118a8c0d4add69a0e721c3d41b2d651dc272b855bfb766a04c0bdc6a | C/C++ | 7,955 | 176 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU ... |
44f2b1de81f2d03fc4b232b9f7e2342dd03d14333a4d73bbda55928a35ee77c6 | C/C++ | 8,055 | 250 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
9bd319548dd073630dfd349c06a440c6a582feec47d4ff14f348ec32f8b4c1f3 | C/C++ | 8,063 | 233 | // Copyright 2003 Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions a... |
d6cfa8474d743697f6c19850d9076ec54c20dab53b76144a14861abe8973e977 | C/C++ | 8,095 | 223 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
ef6a3c05d717f790c9dc5ee18c6ffb2a978ba44c02c01591b305c19d64251f58 | C/C++ | 8,110 | 194 | /* ************************************************************
HEADER blksdp.h
For use with mex-files in self-dual-minimization package.
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2005 McMaster University, Hamilton, CANADA (since 1.1)
%
% Copyright (C) 2001 Jos... |
2a692a8e2c2ac2d3816e84dbd671730341168e8deca081174e716b61b3776246 | C/C++ | 8,191 | 203 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU ... |
35934abd50bc886cab0c90cd6e9148f4c54d9f025da87b9d313e738402223eb9 | C/C++ | 8,221 | 224 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2009 Ricard Marxer <email@ricardmarxer.com>
// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; ... |
76368f0b105c94ef9389256047382a774f6a5d66015da1b22779c528291287be | C/C++ | 8,223 | 317 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// Licens... |
905f8a01d423cb87f648acb44ee55fdcc4d15d6210127fb9baeac84c53ad1ce3 | C/C++ | 8,241 | 260 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
1c4bda51f33e1574f03349fef924f926ff38c612e31a050d5eed3295eb54311b | C/C++ | 8,249 | 230 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008, 2010 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the F... |
16ecc89145d8e8193247bc09390934bce042afcf836e604dfd223bfb701cbcb9 | C/C++ | 8,260 | 241 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
a46fe62f12f027966a86d338ad2deef67d020466d1be245a518cef17f4aaff69 | C/C++ | 8,274 | 207 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
6fc1df1b5a19f5e55851c38ec132e8a7fe3b47e67561bea77060618d1bb00d55 | C/C++ | 8,276 | 225 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
384d6255f05a3e32c52667344eaa0449088149c6c45584eb337e3b4ec1ab0bce | C/C++ | 8,294 | 211 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2007-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free So... |
b13bb1f5367dad6556dae903f4d344bb5f4da05fb608744e170d5ed861c1aa24 | C/C++ | 8,325 | 171 | #ifndef OPAL_H
#define OPAL_H
/***********************************************************************************
* - adapts score type and reports overflow if score does not fit in int
* - calculating column by column (not 4 of them at once)
* - db sequences are not padded
* - using saturation arithmetic whe... |
37acc31b65387c747c109485942a84d0b9de660183c8c674e9049edbd6f8f007 | C/C++ | 8,346 | 202 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
3a45d1588bd2cb85ca5077c1008e907bba106c952c3a81bd732ef0182be4090b | C/C++ | 8,356 | 299 | // -*- Mode: c++; c-basic-offset: 4; tab-width: 4; -*-
/******************************************************************************
*
* file: DocBookOutput.h
*
* Copyright (c) 2004, Michael E. Smoot
* All rights reverved.
*
* See the file COPYING in the top directory of this distribution for
* mor... |
65f1b4665c7ca6ad5558dc48deb3bbae6ff57dc5f261e756c932c7c46b2e2419 | C/C++ | 8,371 | 236 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
6b8dd0a418346990c707d1ec190834362ecfeadadc23538818c4939bd2d921a5 | C/C++ | 8,394 | 229 | // Copyright 2005, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
d0374edbbe62e88dbec9e1a7acd750ca5332bae71656be174b6bbb025ca38811 | C/C++ | 8,417 | 217 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
e5982b5e60ad824760db4ce59d38ee96fcb9d698aaaaac820c187ec419fb3ee4 | C/C++ | 8,445 | 286 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010 Manuel Yguel <manuel.yguel@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software ... |
c325418ff592de7584aef256cd3c954578a90e5eaa8d79a36f97f78d5692ee5b | C/C++ | 8,452 | 298 | // -*- Mode: c++; c-basic-offset: 4; tab-width: 4; -*-
/******************************************************************************
*
* file: StdOutput.h
*
* Copyright (c) 2004, Michael E. Smoot
* All rights reverved.
*
* See the file COPYING in the top directory of this distribution for
* more in... |
c45109ea21380bb7231b7e42b47e9d2823c41c33beb806c7aadb7354a10cdcc5 | C/C++ | 8,458 | 243 | /* The MIT License
Copyright (c) 2008, 2009, 2011 Attractive Chaos <attractor@live.co.uk>
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without lim... |
4b73bc3c4b225f844f67214b8ba67ca6fc58a01cb5b2d1257369dffa347d6c1c | C/C++ | 8,463 | 223 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Guillaume Saupin <guillaume.saupin@cea.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
bb0a9d3ca88ee00c81adb7c636e73b97085f6ef1b52d6d58edbe2b6dc3adeb4d | C/C++ | 8,472 | 128 | /* header created automatically with -DGEN_TREES_H */
local const ct_data static_ltree[L_CODES+2] = {
{{ 12},{ 8}}, {{140},{ 8}}, {{ 76},{ 8}}, {{204},{ 8}}, {{ 44},{ 8}},
{{172},{ 8}}, {{108},{ 8}}, {{236},{ 8}}, {{ 28},{ 8}}, {{156},{ 8}},
{{ 92},{ 8}}, {{220},{ 8}}, {{ 60},{ 8}}, {{188},{ 8}}, {{124},... |
1692b873d9a34198e3c33c1180bd9f766b05958d25fed3ea102c7039d0cd5005 | C/C++ | 8,473 | 262 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2011 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
b91d895b24e2e0271a87d9becbed445cab7fb008407ad805a1ca4cc67196ee76 | C/C++ | 8,478 | 206 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU ... |
a1b66d001ba25325668d64871ccd7fd7f8f77b1705a9646d8465751b38b1cdfe | C/C++ | 8,514 | 236 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2009 Ricard Marxer <email@ricardmarxer.com>
// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; ... |
5da3463e7f74a83c4f7befddb811e4ac49e13faedf068f1b47977ce376706e7b | C/C++ | 8,532 | 226 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
5cde89e22f650b3d0b0989b2fb867de39caa4509d4dcd10939063f477147ab60 | C/C++ | 8,543 | 255 | #ifndef STREAM_INFO_IMPL_H
#define STREAM_INFO_IMPL_H
#include "common.h"
#include <mutex>
#include <pugixml.hpp>
#include <unordered_map>
namespace lsl {
/// LRU cache for queries
class query_cache {
std::unordered_map<std::string, int> cache;
int query_cache_age{0};
std::mutex cache_mut_;
public:
bool matches... |
8b00c33aa36cd0d33190b9cc55784869939cb83548ec46aab92d03467c472233 | C/C++ | 8,668 | 221 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms o... |
3b26c480fbc84caffc526cf35fa5a9f64f1754464bf4ed2d910b0c4aaefb0464 | C/C++ | 8,673 | 292 | //
// Created by Till Konrad Aust on 17.12.21.
//
#ifndef KILOGRID_H
#define KILOGRID_H
namespace argos {
class CSpace;
class CRay3;
class CFloorEntity;
class CSimulator;
}
#include <math.h>
#include <random>
#include <behaviours/agent.h>
#include <argos3/core/simulator/loop_functions.h>
#include <a... |
2bc5a68161929e6c064a369155842bd9e8e297211edd35e4a384f9661322d1f9 | C/C++ | 8,687 | 270 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Guillaume Saupin <guillaume.saupin@cea.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
0280e2807378f28298e19a2147ff7662aef2e4ce3615b30ecc620af0ab7ad664 | C/C++ | 8,732 | 138 | #pragma once
#include "NeuropixAPI.h"
#ifdef __cplusplus
extern "C" {
#endif
typedef enum
{
ChannelType_None = 0,
ChannelType_LFP = (1 << 0),
ChannelType_AP = (1 << 1),
ChannelType_ADC = (1 << 2)
}channeltype_t;
struct probechannelstatistics {
uint32_t channelnr;
uint32_t samplecount;
double min;... |
5d59aee216d114663ae3889b994b7ebd763a9a87114efeb61a34bd876cd932ef | C/C++ | 8,779 | 156 | #pragma once
#include "common.h"
#include "types.h"
/// @file resolver.h Stream resolution functions
/** @defgroup continuous_resolver The lsl_continuous_resolver
* @ingroup resolve
*
* Streams can be resolved at a single timepoint once (@ref resolve) or continuously in the
* background.
* @{
*/
/**
* Constru... |
1072025d970f97e14b3a4a3c1b917352e352236cca1169670d12b3dfe6c47308 | C/C++ | 8,793 | 205 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2007-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
3874e961a4852acde8d11af4e91679e185a62e029f363ce79ddf8ac52334b281 | C/C++ | 8,825 | 235 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
e287cad3064268a57ba6d37b3e6863beac88d70dab8f4e6f7b258a81824230aa | C/C++ | 8,830 | 247 | //
// Created by hassa on 11/04/2020.
//
#ifndef C_CHECK_XDFWRITER_H
#define C_CHECK_XDFWRITER_H
#pragma once
#include "conversions.h"
#include <cassert>
#include <mutex>
#include <sstream>
#include <thread>
#include <type_traits>
#include <vector>
#include <iostream>
using namespace std;
#ifdef XD... |
ed106d1694febe836428ffb8bc6e7d329a9e20a7cc0ce3871c2ac2d22fb4d5b6 | C/C++ | 8,833 | 263 | #ifndef STREAM_INFO_IMPL_H
#define STREAM_INFO_IMPL_H
#include "common.h"
#include <cstdint>
#include <mutex>
#include <pugixml.hpp>
#include <string>
#include <unordered_map>
namespace lsl {
/// LRU cache for queries
class query_cache {
std::unordered_map<std::string, int> cache;
int query_cache_age{0};
std::mut... |
d12be3d971b16a4e7f99f19dfa4429e4a6600541885da3771042ae2d69059634 | C/C++ | 8,864 | 253 | /*
Copyright Rene Rivera 2012-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_OS_BSD_OPEN_H
#define BOOST_PREDEF_OS_BSD_OPEN_H
#include <boost/predef/os/bsd.h>
/* tag::reference[]
= `BOOST_... |
fb0ceb2f1f996869adb22140ac4de80bbb9b33e8852c1d6d41b4590f59d5e639 | C/C++ | 8,876 | 255 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2007-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
ae76e9bc29fcc092c34d88e9406dfb46ce278f11eb588f99bf61b569b24d8253 | C/C++ | 8,915 | 215 | #include <cmath>
#include <numeric>
#include <algorithm>
#include <boost/math/constants/constants.hpp>
// #include <boost/math/special_functions/owens_t.hpp>
// This file contains two implementations of bivariate cumulative density function
// One is copied from STAN library, another from BVNcdf package for matlab (se... |
bee65d55a4910f51966188a118f4b8a50b9e75e972108a043a8765eec8341a6f | C/C++ | 8,934 | 253 | /* The MIT License
Copyright (c) 2008, 2009, 2011 Attractive Chaos <attractor@live.co.uk>
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without lim... |
4f3acbbce216ce22cc2b7560f8162e5c056a915c9ca6885895bd01437fadd96b | C/C++ | 8,949 | 290 | namespace internal {
template <typename Scalar>
void lmpar(
Matrix< Scalar, Dynamic, Dynamic > &r,
const VectorXi &ipvt,
const Matrix< Scalar, Dynamic, 1 > &diag,
const Matrix< Scalar, Dynamic, 1 > &qtb,
Scalar delta,
Scalar &par,
Matrix< Scalar, Dynamic, 1 > ... |
f71247a850d6658d4be68f73048d3ad0be4f44de6aeec518a51c56cb25df1ae6 | C/C++ | 8,996 | 229 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms o... |
dd9941894b58f4a90095127e03a4d936b961266634334a0431f0b2b668eaab74 | C/C++ | 8,998 | 389 | #ifndef OPTIONS_H
#define OPTIONS_H
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include <vector>
#include <map>
using namespace std;
#define UMI_LOC_NONE 0
#define UMI_LOC_INDEX1 1
#define UMI_LOC_INDEX2 2
#define UMI_LOC_READ1 3
#define UMI_LOC_READ2 4
#define UMI_LOC_PER_INDEX 5
#define UMI_LOC_PER_R... |
73f6ad108df23b20c4ec4348f0b2e61b461fa163752f337e59af86b9c8907cfb | C/C++ | 9,027 | 215 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
ea1f369035f49cedc5d9a0bd422c4d407346ed9933652754399d6e5dadab395d | C/C++ | 9,061 | 196 | #pragma once
#include "common.h"
#include "types.h"
/// @file streaminfo.h Stream info functions
/** @defgroup streaminfo The lsl_streaminfo object
*
* The #lsl_streaminfo object keeps a stream's meta data and connection settings.
* @{
*/
/**
* Construct a new streaminfo object.
*
* Core stream information is... |
0b8d0322fbc366a7043c0d4a4341a26b50cd0a98e67a5799d5eef321075a1ce6 | C/C++ | 9,073 | 246 | /**
* @license
* Copyright 2016 Google Inc.
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or... |
f60ce719156055e6897b135fc1468b3dc7c36f29816215012e84ac0330a2cc34 | C/C++ | 9,095 | 228 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
49e33c790d4583b5a2a7eea5ccd4ff51029a5151abeb857f7add33d386b9066a | C/C++ | 9,102 | 257 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2011 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
fe9fe946ac6941aedf640ceb4aec388a35107f82d78de82357d44bc91b4b1a06 | C/C++ | 9,112 | 251 | /*
Copyright Rene Rivera 2012-2015
Distributed under the Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt or copy at
http://www.boost.org/LICENSE_1_0.txt)
*/
#ifndef BOOST_PREDEF_OS_BSD_OPEN_H
#define BOOST_PREDEF_OS_BSD_OPEN_H
#include <boost/predef/os/bsd.h>
/*`
[heading `BOOST_OS_BSD_OP... |
4eb7dcc1ac0c8fc59c57eb1b5cd40a20d7764c5ce48936dc2ec8c4a146e59cfa | C/C++ | 9,165 | 262 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
a710b6f8fa7c548ced5777852796b8f7e45488839c07a95fadbd2bc260ac4c23 | C/C++ | 9,171 | 220 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
685c65972c53f280d49adee26f0e61e9a5472e0d87b2241d535c9457ca01c082 | C/C++ | 9,175 | 243 | #ifndef FASTP_BGZF_H
#define FASTP_BGZF_H
#include <cstdio>
#include <cstdint>
#include <cstring>
#include <atomic>
#include <thread>
#include <mutex>
#include <condition_variable>
#include <vector>
#include <isa-l/igzip_lib.h>
static const int BGZF_HEADER_SIZE = 18;
static const int BGZF_MAX_BLOCK_SIZE = 65536;
sta... |
26d9a2fc09d6a347d8a96fa6351aa062d232d3ef51fbc1d8bff60d9bf3f30709 | C/C++ | 9,189 | 305 | #ifndef HTS_H
#define HTS_H
#include <stddef.h>
#include <stdint.h>
#ifndef HTS_BGZF_TYPEDEF
typedef struct BGZF BGZF;
#define HTS_BGZF_TYPEDEF
#endif
struct cram_fd;
struct hFILE;
#ifndef KSTRING_T
#define KSTRING_T kstring_t
typedef struct __kstring_t {
size_t l, m;
char *s;
} kstring_t;
#endif
#ifndef kroundup... |
72c946a3d0f40fca1bf5c5bd58f34947448cf3e7a987a9e37c9236ceede403e7 | C/C++ | 9,215 | 239 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
af993af058949176a62df660eedd6b6264dad27a37dbda873729da020beaa806 | C/C++ | 9,259 | 256 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2011 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
a5edf0b7b9b880eec6ea1f610fbb8c07716a855649c36c36dd0327df8534f3c4 | C/C++ | 9,271 | 239 | #ifndef H_ReadAlign
#define H_ReadAlign
#include "IncludeDefine.h"
#include "Parameters.h"
#include "Transcript.h"
#include "Genome.h"
#include "Stats.h"
#include "OutSJ.h"
#include "Transcriptome.h"
#include "BAMoutput.h"
#include "Quantifications.h"
#include "ChimericDetection.h"
#include "SoloRead.h"
#include "Read... |
d0343e0c57ff58008b6f29643d289c72713aa2d653fe3dcd2e939fc77e7e20b6 | C/C++ | 9,283 | 307 | /*
*
* Copyright (c) 1997
* Christian Michelsen Research AS
* Advanced Computing
* Fantoftvegen 38, 5036 BERGEN, Norway
* http://www.cmr.no
*
* Permission to use, copy, modify, distribute and sell this software
* and its documentation for any purpose is hereby granted without fee,
* provided that the above co... |
d1e3214fbe922b74bd37edf36f91c8c6fc99ea391ee7be18ff7aa8a002890783 | C/C++ | 9,302 | 270 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
66a73e185c901fa3e7977666c4a30b206117fea1a741bdc3c09aa1ec72bdaaab | C/C++ | 9,330 | 306 | /*
Copyright (c) 1993, 1995-2002 MEDICAL RESEARCH COUNCIL
All rights reserved
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1 Redistributions of source code must retain the above copyright notice,
this list of condit... |
5deaf0e78fa243991840b6c32babe1826e850b98de8f501154e06426f3cbe105 | C/C++ | 9,435 | 238 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
0e61d9a4fadee2983933f2d9d872ae05d9d6db86fea648a3bc90e13b42a81ea1 | C/C++ | 9,619 | 301 |
/******************************************************************************
*
* file: UnlabeledMultiArg.h
*
* Copyright (c) 2003, Michael E. Smoot.
* All rights reverved.
*
* See the file COPYING in the top directory of this distribution for
* more information.
*
* THE SOFTWARE IS PROVIDED _... |
89a617ef5fd13c3f3f9cdae2e60bf0bef645fe81eb56797f38bdf179be2a8201 | C/C++ | 9,668 | 247 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
638d2bb6c06a894513b03311a8e931ac835fc00afc4bd21fab3afc05732c23a0 | C/C++ | 9,697 | 210 | // Copyright 2008, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
dfaa3a65e06fa667427a3e78aac96413b78ddacab3e7b3228a8f013b2ad422e9 | C/C++ | 9,775 | 293 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms o... |
e001a3225b0ffc5338c167c765615581f0bcac49a8d2cd8b0be9dd67afeef72d | C/C++ | 9,776 | 248 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2007-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms o... |
46527e57d0ab478efd431b34239e13b5da68dbd437af6c5aa6ec801a3e12ff81 | C/C++ | 9,797 | 235 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Soft... |
c255814f0b9da3cb777303386d1f480c45497bbd81320340e2cda918f65f3a46 | C/C++ | 9,814 | 138 | /*
bgmg - tool to calculate log likelihood of BGMG and UGMG mixture models
Copyright (C) 2018 Oleksandr Frei
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License... |
9638516c0496f19347ff33101b581e6a90e24d185b41679a81de0c23d5e35568 | C/C++ | 9,857 | 313 | /* The MIT License
Copyright (c) 2008 Broad Institute / Massachusetts Institute of Technology
2011, 2012 Attractive Chaos <attractor@live.co.uk>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), ... |
7242fd67b873e281e7a02996fab9f276cc19000729bc636a9ecf464203693095 | C/C++ | 9,874 | 392 | #pragma once
#include <cassert>
#include <cstring>
#include <cstdio>
#include <fcntl.h>
#include <sys/stat.h>
#ifdef _WIN32
# include <Windows.h>
# include <time.h>
# include <sys/timeb.h>
# include <io.h>
# include <share.h>
#else
# include <unistd.h>
# include <sys/syscall.h>
# includ... |
e625bc2f7bbe86d50014acb9ffc50e80e2b68a567f408d77d66bf2f472aa7cb9 | C/C++ | 9,874 | 233 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Ilya Baran <ibaran@mit.edu>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation... |
84cf56ca7dfa9e40de1c4cd4a0ff889889d94dcef26c7e9134abe0605769e84e | C/C++ | 9,901 | 216 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU ... |
c384afa9990439bd814a095fc44bc4f8101c5958165881bb24f9359584658b72 | C/C++ | 9,915 | 221 | /*
* FILE: CORE_library.h
* --------------------
* Common computational routines for Matlab CORE_function_ MEX files.
*
* samar@cs.stanford.edu, 01/18/06
*/
#ifndef __CORE_LIBRARY__
#define __CORE_LIBRARY__
/* -------------------------- EXTERNAL FUNCTIONS --------------------------- */
#ifdef matrix_h /* If... |
74a43e54acd0f5e260c9900a3741acaa1a54853574b4c77d471299b6d33eda9a | C/C++ | 9,928 | 245 | /*
Copyright (c) 2011, Intel Corporation. All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this
list of conditions and the ... |
9a8a13de6e9db9ec4e5b30841c36a225e19d429016ce5281f80977cedb7a89be | C/C++ | 9,938 | 253 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free... |
4452603d7bd16266ee215c75d0deeca2ce9fba245f57ccd3c98e62f387c8036e | C/C++ | 9,940 | 272 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Mark Borgerding mark a borgerding net
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software... |
560407dd45e8e57fa6927504c9e4a4cfdecf30f8cada975c1ffddce765e6a88a | C/C++ | 9,951 | 232 | // Copyright 2007, Google Inc.
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions ... |
2e51c993786bc1e56260b9507b9cbb27b1aeeebcc1f9903aeebddd39663722e3 | C/C++ | 10,033 | 240 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
bca76afe7c00a3cc331c8f25710a5cd5a23f8e0452f43ee1b0199185d54c599a | C/C++ | 10,108 | 272 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008, 2010 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the F... |
bd5fba9d83217ef6af40fc0580247ede47af1f6a436a6cf1b818e41d7b43effa | C/C++ | 10,125 | 285 | /* The MIT License
Copyright (c) 2008 Genome Research Ltd (GRL).
Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use... |
e7d1f680a5cf8a5de314bdc6f22a565e8154bcb4e74625954f993ee417798d48 | C/C++ | 10,125 | 371 | /* Contact ythomas@csail.mit.edu or msabuncu@csail.mit.edu for bugs or questions */
/*=========================================================================
Copyright (c) 2008 Thomas Yeo and Mert Sabuncu
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are ... |
62feafa844cbd7a34f6bc436687ce796abc1169ec2b9da7659cdf85a9c6dc9fe | C/C++ | 10,160 | 259 | // Copyright 2008 Google Inc.
// All Rights Reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions a... |
19cb3a75e049f786555af86153187d09768a38bb6a236660d252401c0e6cc4f5 | C/C++ | 10,177 | 227 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms o... |
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