sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ec86b206c2c40e6126b553193ab5b27c51911adb1430f3a6b9fbd75b39d930f8 | NEURON | 419 | 30 | NEURON {
POINT_PROCESS inject_norm_concentration
USEION x WRITE xd
RANGE alpha, beta
}
ASSIGNED {
beta
volume
}
PARAMETER {
alpha = 200
area
diam
}
INITIAL {
beta = 0
volume = area*diam/4 : = pi*r^2*h
}
BREAKPOINT {
xd = xd + beta * area / 1000 / volume : considering particle concentration -... |
4a891d55dadd658d50dbb92588b09583422474c099b732d3c0686b6538f58362 | NEURON | 425 | 36 | NEURON {
SUFFIX test1_kin_compartment
}
STATE {
s d h
}
PARAMETER {
A = 0.5
}
BREAKPOINT {
SOLVE state METHOD sparse
}
KINETIC state {
COMPARTMENT A {s h d}
LOCAL alpha1, beta1, alpha2, beta2
alpha1 = 2
beta1 = 0.6
alpha2 = 3
beta2 = 0.7
~ s <-> h (alpha1, beta1)
~ ... |
b52e706674605ed8946289e15f7e65c600d71e681436fc1fdd997bd307470009 | NEURON | 425 | 38 | NEURON {
POINT_PROCESS expsyn
RANGE tau, e
NONSPECIFIC_CURRENT i
}
UNITS {
(mV) = (millivolt)
(uS) = (microsiemens)
}
PARAMETER {
tau = 2.0 (ms) : the default for Neuron is 0.1
e = 0 (mV)
}
ASSIGNED {}
STATE {
g (uS)
}
INITIAL {
g = 0
}
BREAKPOINT {
SOLVE state METHOD cne... |
6c25e47a75336ec47cb539e6d9d2d34bfca85ce486215154bf62a2534cabb4fe | NEURON | 429 | 36 | NEURON {
SUFFIX test0_kin_compartment
}
STATE {
s d h
}
PARAMETER {
A = 0.5
B = 0.1
}
BREAKPOINT {
SOLVE state METHOD sparse
}
KINETIC state {
COMPARTMENT A {s h}
COMPARTMENT B {d}
LOCAL alpha1, beta1, alpha2, beta2
alpha1 = 2
beta1 = 0.6
alpha2 = 3
beta2 = 0.7
... |
36a9f91938cd5ccb19fbb4b5d196ed7cdb1458d438ae0147da1e746a152426e4 | NEURON | 475 | 39 | NEURON {
SUFFIX test1_kin_steadystate
}
STATE {
a b x y
}
PARAMETER {
A = 0.5
B = 0.1
}
BREAKPOINT {
SOLVE state STEADYSTATE sparse
}
KINETIC state {
COMPARTMENT A {a b}
LOCAL alpha1, beta1, alpha2, beta2
alpha1 = 2
beta1 = 0.6
alpha2 = 3
beta2 = 0.7
~ a <-> b (alph... |
d629fac78ebc76a13deb5bb31d11190a18d19f4e4476c0f8b8202efd3013c1d6 | NEURON | 506 | 23 | NEURON {
SUFFIX neuron_with_diffusion
USEION s READ sd
}
PARAMETER {
area : surface area of the CV (in µm^2, internal variable)
diam : CV diameter (in µm, internal variable)
}
ASSIGNED {
volume : volume of the CV (conversion factor between concentration and particle amount, in µm^3)
sV : particle amount in the ... |
3e583ed11b5522ca3c0992928dc82bd9826120927580e804f2e7909fb5209c8a | NEURON | 545 | 47 | : Delta synapse without plasticity
NEURON {
POINT_PROCESS deltasyn
RANGE g_spike
NONSPECIFIC_CURRENT I
}
UNITS {
(ms) = (milliseconds)
(mV) = (millivolt)
}
PARAMETER {
g_spike = 1 (mV) : increase in g through one spike
}
ASSIGNED {
}
STATE {
g (mV) : instantaneous synaptic conductance (non-zero if there a s... |
5acf1ba06a4d3193b51d55c641138e53ceef67567c0ec14e334825bdacfc5a2a | NEURON | 565 | 39 | : Based on Kd model of Foust et al. (2011)
NEURON {
SUFFIX Kd
USEION k READ ek WRITE ik
RANGE gbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gbar = 0.00001 (S/cm2)
}
STATE { m h }
BREAKPOINT {
SOLVE states METHOD cnexp
LOCAL g
g = gbar*m*h
ik = g... |
b31204080391a9620eb0865796205fddc116ba82c55315ebe80cee938f7836df | NEURON | 574 | 38 | : Example of mechanism that updates the concentration of an ionic species.
NEURON {
SUFFIX test_ca
USEION ca READ ica WRITE cai VALENCE 2
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(molar) = (1/liter)
(mM) = (millimolar)
(um) = (micron)
}
PARAMETER {
decay = 80 (ms) : decay rate ... |
63d2b13764f51b7a07781fec3d0728e80af4127eb5a350bbd8354598d8da22b8 | NEURON | 583 | 43 | NEURON {
POINT_PROCESS exp2syn
RANGE tau1, tau2, e
NONSPECIFIC_CURRENT i
}
UNITS {
(mV) = (millivolt)
}
PARAMETER {
tau1 = 0.5 (ms)
tau2 = 2 (ms)
e = 0 (mV)
}
ASSIGNED { factor }
STATE { A B }
INITIAL {
LOCAL tp
A = 0
B = 0
tp = (tau1*tau2)/(tau2 - tau1) * log(tau... |
8aff49c5acd969eb17ceb2ae5dc7d3ad151f3b830a5ea822f641e7977e6bd750 | NEURON | 609 | 37 | NEURON {
POINT_PROCESS template
RANGE xp, yp, zp, xd, yd, zd
NONSPECIFIC_CURRENT i
}
PARAMETER {
field
xp yp zp : proximal coordinates
xd yd zd : distal coordinates
r_axial : axial resistivity
}
ASSIGNED { da }
STATE {}
INITIAL {
LOCAL dx, dy, dz
: vector spanned by segment ... |
62833b639adb5524bba9c4da2e201d11343ae44bdc46e9d82fb3537cef9cce2e | NEURON | 615 | 40 | : Comment: Kv3-like potassium current
NEURON {
SUFFIX Kv3_1
USEION k READ ek WRITE ik
RANGE gbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gbar = 0.00001 (S/cm2)
vshift = 0 (mV)
}
STATE { m }
BREAKPOINT {
SOLVE states METHOD cnexp
... |
9ccc274bd93b30a532002a1ad746bbc23487bde1a8a305fa7d9852b5cc34551b | NEURON | 630 | 30 | : Compute reversal potential for generic ion using Nernst equation.
:
: TODO: support global derived parameters via e.g. GLOBAL + ASSIGNED,
: so that we don't need to store a copy of coeff at every CV.
NEURON {
SUFFIX nernst
USEION x READ xi, xo WRITE ex VALENCE zx
GLOBAL R, F
RANGE coeff
}
PARAMETER ... |
b3f820ae7cff108211f73c247d7f16104c937c805b1b0cadce01354da71b970a | NEURON | 634 | 38 | : Ornstein-Uhlenbeck: linear mean reverting process
: =================================================
: dS(t) = kappa [mu - S(t)] dt + sigma dW(t)
: E[S(t)] = mu - (mu-S_0)*e^(-kappa t)
: Var[S(t)] = sigma^2/(2 kappa) [1 - e^(-2 kappa t)]
: in the limit:
: lim t->∞ E[S(t)] = mu
: lim t->∞ Var[S(t)] = ... |
741dad2d44ecfcc98c3470f6a0f085ecaabf9c6638f9577b7b3e22af98f423e2 | NEURON | 639 | 23 | //register APs in each GC
objref BCAP[BC_number], BCAP_time[BC_number]
objref GCAPrecord[GC_number]
objref GCAP_time[GC_number] //record the time of individual APs in each GC
proc RegisterAP(){ local a
for a=0, GC_number-1 {access GC[a].soma
GCAPrecord[a]=new APCount(0.5)
GCAPrecord[a].thresh... |
0d99970074dc2b818395e5d8334ece8ba5922c63dd149e5d21cb8ee2762419ac | NEURON | 650 | 42 | : Stochastic Volatility (linear SDE)
: ===================================
: P: log of the price (of a stock or bond)
: sigma: volatility
: The observed volatility of the price is not constant but itself a stochastic process.
NEURON {
POINT_PROCESS stochastic_volatility
GLOBAL mu, theta, kappa, sigma_1
}
... |
321c02cb8e781a5c67e0ae9870040b458e17ce73e3bea1cf65584dbe8a72c36b | NEURON | 657 | 45 | : SK-type calcium-activated potassium current
: Reference : Kohler et al. 1996
NEURON {
SUFFIX SK_E2
USEION k READ ek WRITE ik
USEION ca READ cai
RANGE gSK_E2bar
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(mM) = (milli/liter)
}
PARAMETER {
gSK_E2bar = 0.000001 (mho/cm2)
zTau ... |
6740580059668efbcbf545caff9a08465edae6d8a9e33bfe2c586064a7f2626e | NEURON | 665 | 50 | UNITS {
(mV) = (millivolt)
(S) = (siemens)
}
NEURON {
SUFFIX pas
NONSPECIFIC_CURRENT i
RANGE g, e
}
INITIAL {}
PARAMETER {
g = .001 (S/cm2)
e = -65 (mV) : we use -65 for the ball and stick model, instead of Neuron default of -70
v (mV)
}
STATE { s }
BREAKPOINT {
foo(i)
}
PROCED... |
e0239fd031a605adec61181bd8dc9f76b51b987d86b616d1cf065db49bb04e17 | NEURON | 670 | 43 | :Reference Characterization of a Shaw-related potassium channel family in rat brain, The EMBO Journal, vol.11, no.7,2473-2486 (1992)
NEURON {
SUFFIX SKv3_1
USEION k READ ek WRITE ik
RANGE gSKv3_1bar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gSKv3_1b... |
5ddaae579fafaee6b44dfe984a175111476532617498b99bb8b65daabe2fe25d | NEURON | 683 | 46 | : Exponential current-based synapse
NEURON {
POINT_PROCESS expsyn_curr
RANGE w, tau, R_mem
NONSPECIFIC_CURRENT I
}
UNITS {
(ms) = (milliseconds)
(mV) = (millivolt)
(MOhm) = (megaohm)
}
PARAMETER {
R_mem = 10.0 (MOhm) : membrane resistance
tau = 5.0 (ms) : synaptic time constant
w = 4.20075 (mV) : weight
}
... |
974e49f742630d5ca9273e1bb2457b0a3c1541708870f4ede124fe41c36af9cb | NEURON | 695 | 42 | : Mean reverting process (linear SDE)
: ===================================
: dS(t) = kappa [mu - S(t)] dt + sigma dW(t)
: If mu==0 it is called Ornstein-Uhlenbeck process
: E[S(t)] = mu - (mu-S_0)*e^(-kappa t)
: Var[S(t)] = sigma^2/(2 kappa) [1 - e^(-2 kappa t)]
: in the limit:
: lim t->∞ E[S(t)] = mu
: ... |
02897cf63553d16b273d83dadb523116343c4c35d81b731ca11d110b956eb5a0 | NEURON | 697 | 43 | : SK-type calcium-activated potassium current
: Reference : Kohler et al. 1996
NEURON {
SUFFIX SK
USEION k READ ek WRITE ik
USEION ca READ cai
RANGE gbar
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(mM) = (milli/liter)
}
PARAMETER {
gbar = .000001 (mho/cm2)
zTau = 1 (ms)
... |
45155e560f30be08034c663afe1e40f08b001bf063198806692fa8506352e871 | NEURON | 743 | 42 | NEURON {
POINT_PROCESS efield
RANGE xp, yp, zp, xd, yd, zd
NONSPECIFIC_CURRENT i
}
PARAMETER {
xp yp zp : proximal coordinates
xd yd zd : distal coordinates
e0 : amplitude
omega : frequency
r_axial : axial resistivity
}
ASSIGNED { da }
STATE { t }
INITIAL {
LOCAL dx... |
3eaa6df73d441bfeb7b0c43cee9ec6447ec2c6f5feef9f0e41e7da5d56ce1e64 | NEURON | 752 | 55 | :Comment :
:Reference : : Characterization of a Shaw-related potassium channel family in rat brain, The EMBO Journal, vol.11, no.7,2473-2486 (1992)
NEURON {
SUFFIX SKv3_1
USEION k READ ek WRITE ik
RANGE gSKv3_1bar, gSKv3_1, ik
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gSKv... |
95aca9201cb48ffecf28a3d86b837e1785677ce116db10d38061b6a0d2f8daf8 | NEURON | 768 | 53 | : Reference: Kole,Hallermann,and Stuart, J. Neurosci. 2006
NEURON {
SUFFIX Ih
NONSPECIFIC_CURRENT ihcn
RANGE gIhbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gIhbar = 0.00001 (S/cm2)
ehcn = -45.0 (mV)
}
STATE {
m
}
BREAKPOINT {
SOL... |
7b985bdb1e990a58ca08cdda29f8b6902b96f23cc76b6b9002d00efe84d7c729 | NEURON | 800 | 39 | COMMENT
Author: Aaron Miller
Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig Germany
--
Point process which computes membrane current (nonspecific current) as a result of a user provided conductance
timeseries.
Based on a conductance-based synapse, the user specifies the refersal potential 'e', the... |
12c5a01d381269817d01572525c61a12d88f583ed458454e11396d861d0dc848 | NEURON | 824 | 47 | : Reference: Kole, Hallermann, and Stuart
: J. Neurosci. 2006
NEURON {
SUFFIX Ih
NONSPECIFIC_CURRENT ihcn
RANGE gbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gbar = 0.00001 (S/cm2)
ehcn = -45.0 (mV)
}
STATE { m }
BREAKPOINT {
... |
69e82e8bb3d6e9f0fc0855d67a425e22b3e11752c8ddb097c49e42bdaf150b99 | NEURON | 842 | 68 | NEURON {
SUFFIX test_inilining
}
UNITS {
(mV) = (millivolt)
(S) = (siemens)
}
PARAMETER {
alpha = 2
beta = 4.5
gamma = -15
delta = -0.2
}
STATE {
s0
s1
s2
}
BREAKPOINT {
s1 = foo(alpha, beta)
rates(delta)
s0 = s1 * s2
}
FUNCTION iden(x) {
iden = x
}
FUNCTION... |
7ba06f1311673e3204153eba28c2abbe5313c24bd97efc17587955d28b1ae146 | NEURON | 874 | 41 | : Dynamics that track inside calcium concentration
: modified from Destexhe et al. 1994
NEURON {
SUFFIX CaDynamics_E2
USEION ca READ ica WRITE cai
RANGE decay, gamma, minCai, depth, initCai
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(molar) = (1/liter)
(mM) = (millimolar)
(um) ... |
06336a169e9c747f910b54f46ccf20e6d7b977f18c27ed517513a6d21ddffdc0 | NEURON | 883 | 62 | :Reference : : Adams et al. 1982 - M-currents and other potassium currents in bullfrog sympathetic neurones
:Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON {
SUFFIX Im
USEION k READ ek WRITE ik
RANGE gImbar, gIm, ik
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (millia... |
202cbbafabdc7bd73f3c43959af12d9120f021622d8c5a48427fe756b49b431f | NEURON | 887 | 48 | : Based on Im model of Vervaeke et al. (2006)
NEURON {
SUFFIX Im_v2
USEION k READ ek WRITE ik
RANGE gbar, qt
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
celsius (degC)
gbar = 0.00001 (S/cm2)
}
ASSIGNED { qt }
STATE { m }
BREAKPOINT {
SO... |
ab143a0b0203164bfbe8848e532346ddc5dafc1ce15481039c9d8d489f5710ed | NEURON | 890 | 50 | : Reference: M-currents and other potassium currents in bullfrog sympathetic neurones
: Adams et al. 1982
: Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON {
SUFFIX Im
USEION k READ ek WRITE ik
RANGE gbar, qt
}
UNITS {
(S) = (siemens)
(mV) = (milliv... |
48f2754d49637a88d811dd15a185b9acf7d4d39d3e3f12abd47d10c80dd92022 | NEURON | 892 | 39 | : Dynamics that track inside calcium concentration
: modified from Destexhe et al. 1994
NEURON {
SUFFIX CaDynamics
USEION ca READ ica WRITE cai
RANGE decay, gamma, minCai, depth
GLOBAL F
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(molar) = (1/liter)
(mM) = (millimolar)
... |
a6d3338de6d5a43e6d27d8acc29b0c967a10019b98b984d302747647e7ce9676 | NEURON | 899 | 57 | TITLE K-DR
: K-DR current for Mitral Cells from Wang et al (1996)
: M.Migliore Jan. 2002
: ek (mV) must be explicitly def. in hoc
: ik (mA/cm2)
NEURON {
THREADSAFE
SUFFIX kdrmt
USEION k READ ek WRITE ik
RANGE gbar, vhalfm
}
PARAMETER {
v(mV)
celsius
gbar = 0.002 (mho/cm2)
a0m... |
754d819bc8f87dc0e2d9432a87923873f0a42f4c3ec234392b4dd09eade936f8 | NEURON | 902 | 54 | : Reference: Adams et al. 1982 - M-currents and other potassium currents in bullfrog sympathetic neurones
: Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON {
SUFFIX Im
USEION k READ ek WRITE ik
RANGE gImbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) ... |
ef189b4f5acff3a35d6d8b14bddcee89e71980f992edc1265602fda5aa661fd8 | NEURON | 904 | 47 | :Reference : Modeled according to kinetics derived from Magistretti & Alonso 1999
:Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON {
SUFFIX Nap
RANGE gbar, qt
USEION na READ ena WRITE ina
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gb... |
10adc181725442340167e26182b6a5fb5ccb05e367e507b17206d9775dd814d9 | NEURON | 905 | 54 | : Reference: Adams et al. 1982 - M-currents and other potassium currents in bullfrog sympathetic neurones
: Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON {
SUFFIX dummy
USEION k READ ek WRITE ik
RANGE gImbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(m... |
801215ab5bfad19c76fb8bd93ce967427111ed60c8b976c4fc83092e32dd3390 | NEURON | 913 | 36 | : Dynamics that track inside calcium concentration
: modified from Destexhe et al. 1994
NEURON {
SUFFIX CaDynamics_E2
USEION ca READ ica WRITE cai
RANGE decay, gamma, minCai, depth
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
FARA... |
95524c64444dd4f438568a9703a63a03d5cf23482aa8dce43712542d3006211e | NEURON | 976 | 68 | TITLE K-D
: K-D current for prefrontal cortical neuron ------Yuguo Yu 2007
NEURON {
THREADSAFE
SUFFIX KdShu2007
USEION k WRITE ik
RANGE gkbar, ik, ek
GLOBAL minf, mtau, hinf, htau
}
PARAMETER {
gkbar = 0.1 (mho/cm2)
celsius
ek = -100 (mV) : must be explicitly def. in hoc
v (mV... |
a36af230710ec056ae3c62b2b97f5c54f542ed560efd6df30a7b2be3da01e0e6 | NEURON | 1,020 | 53 | : $Id: xtra.mod,v 1.4 2014/08/18 23:15:25 ted Exp ted $
NEURON {
SUFFIX xtra
RANGE es : (es = max amplitude of the potential)
RANGE Ex,Ey,Ez
RANGE Dx,Dy,Dz
RANGE x, y, z, type, order
GLOBAL stim : (stim = normalized waveform)
POINTER ex
}
PARAMETER {
: default transfer resistance between stim electrodes and... |
34493b4bf98dfb0faccfad19270860f59e0f176248d4890712ba84cb6438364f | NEURON | 1,023 | 57 | :Comment LVA ca channel. Note: mtau is an approximation from the plots
:Reference Avery and Johnston 1996, tau from Randall 1997
:Comment shifted by -10 mv to correct for junction potential
:Comment corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON {
SUFFIX Ca_LVAst
USEION ca READ e... |
f63ac2307c95987dfff28e619762d7f9d882237268faaf818e81b15b3ab14aab | NEURON | 1,037 | 53 | : Comment: LVA ca channel.
: Note:
: - mtau is an approximation from the plots
: - shifted by -10 mv to correct for junction potential
: - corrected rates using q10 = 2.3, target temperature 34, orginal 21
: Reference: Avery and Johnston 1996, tau from Randall 1997
NEURON {
SUFF... |
80b9a03bc1d426e97e479cc05ccf86cce2807cf5c99e7a3225eb477fe23ba0a2 | NEURON | 1,065 | 64 | : Reference: Reuveni, Friedman, Amitai, and Gutnick, J.Neurosci. 1993
NEURON {
SUFFIX Ca_HVA
USEION ca READ eca WRITE ica
RANGE gCa_HVAbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gCa_HVAbar = 0.00001 (S/cm2)
}
STATE {
m
h
}
BREAKPOINT {
SOLVE stat... |
32fcc1c371945890a3ffa9bc9154518700bd5453629b714d57aeaf192d60c94c | NEURON | 1,090 | 57 | NEURON {
SUFFIX Nap_Et2
USEION na READ ena WRITE ina
RANGE gNap_Et2bar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gNap_Et2bar = 0.00001 (S/cm2)
}
STATE {
m
h
}
BREAKPOINT {
SOLVE states METHOD cnexp
ina = gNap_Et2bar*m*m*m*h*(v - ena)
}
... |
26305d34fa5f9d27218557bb9c19608431f3b0741a1d81ce8bedc25a60e1e57b | NEURON | 1,105 | 55 | : Comment The transient component of the K current
: Reference Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats:subtypes and gradients,Korngreen and Sakmann, J. Physiology, 2000
: Comment: shifted -10 mv to correct for junction potential
: Comment corrected rates using q10 = ... |
d6f645376d3f08d96d9a9a17c222281683a7a00c85676e33303468b91a1a4886 | NEURON | 1,112 | 57 | : SK-type calcium-activated potassium current
: Reference : Kohler et al. 1996
NEURON {
SUFFIX SK_E2
USEION k READ ek WRITE ik
USEION ca READ cai
RANGE gSK_E2bar, gSK_E2, ik
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(mM) = (m... |
9608f71e6da713d4dcdf3751c1db80dd061a41f2500ff398ff030bd1ed13d274 | NEURON | 1,113 | 55 | :Comment :
:Reference : : Characterization of a Shaw-related potassium channel family in rat brain, The EMBO Journal, vol.11, no.7,2473-2486 (1992)
NEURON {
SUFFIX SKv3_1
USEION k READ ek WRITE ik
RANGE gSKv3_1bar, gSKv3_1, ik
}
UNITS {
(S) ... |
4ec441f956abb923089799c0eadbb79ea5413f3d83ab231016edee92d9f2a176 | NEURON | 1,126 | 69 | NEURON {
SUFFIX NaTa_t
USEION na READ ena WRITE ina
RANGE gNaTa_tbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gNaTa_tbar = 0.00001 (S/cm2)
}
STATE {
m
h
}
BREAKPOINT {
SOLVE states METHOD cnexp
ina = gNaTa_tbar*m*m*m*h*(v-ena)
}
DERI... |
164cba9b88a0390e00277091592df026eeb7d223473d818f9b1a2354d1081b18 | NEURON | 1,128 | 57 | : Reference: Reuveni, Friedman, Amitai, and Gutnick,
: J. Neurosci. 1993
NEURON {
SUFFIX Ca_HVA
USEION ca READ eca WRITE ica
RANGE gbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gbar = 0.00001 (S/cm2)
}
STATE { m h }
BREAKPOINT {
SOLVE s... |
485353c55384c12ecd14de1d78ee322fd5fcb8626bb4cc91840e958cc728b495 | NEURON | 1,136 | 69 | :Comment : LVA ca channel. Note: mtau is an approximation from the plots
:Reference : : Avery and Johnston 1996, tau from Randall 1997
:Comment: shifted by -10 mv to correct for junction potential
:Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON {
SUFFIX Ca_LVAst
USEION ca READ ec... |
2ecbe1b8b2337b5c0cb1dbf12fb4e9f13f0887626fb6fdc347a8e3598af8c5a9 | NEURON | 1,138 | 68 | :Comment : The transient component of the K current
:Reference : : Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats:subtypes and gradients,Korngreen and Sakmann, J. Physiology, 2000
:Comment : shifted -10 mv to correct for junction potential
:Comment: corrected rates using q10 = 2.3,... |
a8c5d374a1e91d603192136ee9af3fa4c4ed3309ae7fafb47d9b02eb5a64daf3 | NEURON | 1,141 | 79 | :Reference :Colbert and Pan 2002
NEURON {
SUFFIX NaTa_t
USEION na READ ena WRITE ina
RANGE gNaTa_tbar, gNaTa_t, ina, mtau_scale, htau_scale
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gNaTa_tbar = 0.00001 (S/cm2)
}
ASSIGNED {
v (mV)
ena (mV)
ina (mA/cm2)
gNaTa_t (S/cm2)
... |
a0785c323b7a97c94314249da0b95283c9c390734bb1dc30c819407d58ba72dc | NEURON | 1,154 | 56 | : Comment: The transient component of the K current
: Reference: Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats:subtypes and gradients
: Korngreen and Sakmann,
: J. Physiology, 2000
NEURON {
SUFFIX K_T
USEION k READ ek WRITE ik
RANGE gbar, qt, vs... |
dc2cc2a9dcc917f96f8e47adc2d7fc73fdbc270010faf5b3e59dfef15218ce06 | NEURON | 1,167 | 61 | :Comment :
:Reference : : Kole,Hallermann,and Stuart, J. Neurosci. 2006
NEURON {
SUFFIX Ih
NONSPECIFIC_CURRENT ihcn
RANGE gIhbar, gIh, ihcn
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PAR... |
08ea6cc1c2c60a611da1ec56b9b765c3830f337fa04288bbede1403ed6d8d959 | NEURON | 1,196 | 80 | :Reference :Colbert and Pan 2002
:comment: took the NaTa and shifted both activation/inactivation by 6 mv
NEURON {
SUFFIX NaTs2_t
USEION na READ ena WRITE ina
RANGE gNaTs2_tbar, gNaTs2_t, ina
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gNaTs2_tbar = 0.00001 (S/cm2)
}
ASSIGNED... |
cedffd64eacca498d676c51cbc9b8e29d441438bcddb9bd1769844df278a8498 | NEURON | 1,199 | 58 | NEURON {
SUFFIX hh05
USEION k READ ek WRITE ik
NONSPECIFIC_CURRENT il
: qt is ASSIGNED, but needs to be RANGE
RANGE gl, el, gkbar, q10
}
ASSIGNED { q10 }
STATE { n }
PARAMETER {
gkbar = 0.036 (S/cm2)
gl = 0.0003 (S/cm2)
el = -54.3 (mV)
celsius (degC)
... |
2d7f5c32e78ef53d9274b64e7e66316b7f06d7be3abd8bf70a8c9083b6a5c8b1 | NEURON | 1,209 | 60 | :Comment The persistent component of the K current
:Reference Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats:subtypes and gradients,Korngreen and Sakmann, J. Physiology, 2000
:Comment shifted -10 mv to correct for junction potential
:Comment corrected rates using q10 = 2.3... |
dfbdb2c4084b6ebe0e662b5e035f9a0968164211bd44cdaa2495b08f3b48af59 | NEURON | 1,212 | 65 | TITLE K-A
: K-A current for Mitral Cells from Wang et al (1996)
: M.Migliore Jan. 2002
: ek must be explicitly set in hoc
: ik has units (mA/cm2)
NEURON {
SUFFIX kamt
USEION k READ ek WRITE ik
RANGE gbar
}
PARAMETER {
celsius
v (mV)
gbar = 0.002 (mho/cm2)
a0m = 0.04
vhalfm... |
72e055bd1b093db1e43ea21232e5d91bfa6f587919db0a42e7e016da9353a7b2 | NEURON | 1,240 | 71 | : Reference Colbert and Pan 2002
: Comment took the NaTa and shifted both activation/inactivation by 6 mv
NEURON {
SUFFIX NaTs2_t
USEION na READ ena WRITE ina
RANGE gNaTs2_tbar
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gNaTs2_tbar = 0.00001 (S/cm2)
}
... |
cefadc128060afeb19961af04e4d28dee9b4f547ef836620073af60280443b8b | NEURON | 1,243 | 58 | : Exponential synapse with online STDP
: cf. https://brian2.readthedocs.io/en/stable/resources/tutorials/2-intro-to-brian-synapses.html#more-complex-synapse-models-stdp
NEURON {
POINT_PROCESS expsyn_stdp
RANGE tau, taupre, taupost, e, Apost, Apre, max_weight
NONSPECIFIC_CURRENT i
}
UNITS {
(mV) = (mil... |
7a72b3981bfca1d227c760564a610e31ec5ae8d016bb918b8f5a8baf39f8a710 | NEURON | 1,246 | 55 | NEURON {
SUFFIX hh04
: a variable can be READ *or* WRITE, the latter granting read and write access
USEION k READ ek WRITE ik
NONSPECIFIC_CURRENT il
: Note, no RANGE for STATE (these are implicitly unique to each CV)
: gkbar is a new PARAMETER
RANGE gl, el, gkbar
}
STATE { n }
PARAMETER {
... |
1e456f76e9c314e8500af8eace6fe9341d0decbbcaa46917c1bc6feb0af6f393 | NEURON | 1,251 | 61 | : Comment: The persistent component of the K current
: Reference: Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats:subtypes and gradients
: Korngreen and Sakmann
: J. Physiology, 2000
NEURON {
SUFFIX K_P
USEION k READ ek WRITE ik
RANGE gbar, vshift... |
66c2b511716db3bad16a2ca67294683aafc815236d6e85d2d3abc178346c3624 | NEURON | 1,251 | 73 | :Comment : The persistent component of the K current
:Reference : : Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats:subtypes and gradients,Korngreen and Sakmann, J. Physiology, 2000
:Comment : shifted -10 mv to correct for junction potential
:Comment: corrected rates using q10 = 2.3... |
dfdf2ef6a360b0140bf13d2cb5882fef345d0beffa1db26290dad9a5ae0b03e2 | NEURON | 1,253 | 61 | :Reference : : Adams et al. 1982 - M-currents and other potassium currents in bullfrog sympathetic neurones
:Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON {
SUFFIX Im
USEION k READ ek WRITE ik
RANGE gImbar, gIm, ik
}
... |
6f66b9a09c476e2b78e61350528c4939e4cc9cc128f87b1a06e4656a3a4fc2bf | NEURON | 1,255 | 34 | NEURON {
SUFFIX protein_synthesis
RANGE theta, alpha, area
USEION pc_ WRITE pc_d : common pool of plasticity-related proteins
USEION sps_ READ sps_d : signal triggering protein synthesis
}
PARAMETER {
theta = 1 : threshold for protein synthesis (refers to SPS concentration, in µmol/l or mmol/l or... |
2de98436ce94d642ed307536aaa1380de5c98bb30a82b6ac3e56c765fe72c18c | NEURON | 1,265 | 93 | TITLE K-DR channel
: from Klee Ficker and Heinemann
: modified to account for Dax et al.
: M.Migliore 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek (mV) : must be explicitely def. in hoc
celsius (degC)
gkdrbar=.003 (mho/cm2)
vhalfn=13 (mV)
a0n=0.02 (/... |
4b2b1d241bdd6ceddfa172d5bd82449a26601d74bb8239ca1426267ae411f954 | NEURON | 1,307 | 68 | : Reference: Colbert and Pan 2002
NEURON {
SUFFIX NaTs
USEION na READ ena WRITE ina
RANGE gbar, qt
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gbar = 0.00001 (S/cm2)
malphaF = 0.182
mbetaF = 0.124
mvhalf = -40 (mV)
mk ... |
1274233a34013e2c73cc816e1acad22b1416018afb427d9a89dbb81fde52bef3 | NEURON | 1,379 | 65 | : Kv2-like channel
: Adapted from model implemented in Keren et al. 2005
: Adjusted parameters to be similar to guangxitoxin-sensitive current in mouse CA1 pyramids from Liu and Bean 2014
NEURON {
SUFFIX Kv2like
USEION k READ ek WRITE ik
RANGE gbar, qt
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(... |
69b1340bf2a51836fc0abaca9f404604b71b2548a79cd25f7524863324ef1d30 | NEURON | 1,384 | 47 | COMMENT
Author: Aaron Miller
Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig Germany
--
Point process which computes membrane current (nonspecific current) as a result of a user provided conductance
timeseries for a voltage gated NMDA synapse. Based on a conductance-based synapse, the user specifie... |
fc5e691e232fd14e5204859438f78d908b1812cfb79d15b9d24085f3e622b195 | NEURON | 1,392 | 70 | : Reference: Colbert and Pan 2002
NEURON {
SUFFIX NaTa
USEION na READ ena WRITE ina
RANGE gbar, qt
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
v (mV)
celsius (degC)
gbar = 0.00001 (S/cm2)
malphaF = 0.182
... |
242a82bb451552c1eb5bdb66c69ee6d77d297c209878f832f9fea440e8e7b0d2 | NEURON | 1,442 | 72 | :Comment :
:Reference : : Reuveni, Friedman, Amitai, and Gutnick, J.Neurosci. 1993
NEURON {
SUFFIX Ca
USEION ca READ eca WRITE ica
RANGE gCabar, gCa, ica
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
... |
7a420473f8359912b77914fe2ada91857db0aa4c6b62c0c3ff94a00dc857d02c | NEURON | 1,458 | 85 | :Comment : mtau deduced from text (said to be 6 times faster than for NaTa)
:Comment : so I used the equations from NaT and multiplied by 6
:Reference : Modeled according to kinetics derived from Magistretti & Alonso 1999
:Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON {
SUFFIX Nap... |
cda3a55f8cca3c6e0f698650a924a530f625c129f5b31646cbd6c12061e2b18b | NEURON | 1,462 | 72 | :Comment :
:Reference : : Reuveni, Friedman, Amitai, and Gutnick, J.Neurosci. 1993
NEURON {
SUFFIX Ca_HVA
USEION ca READ eca WRITE ica
RANGE gCa_HVAbar, gCa_HVA, ica
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (millia... |
869442edbf6c41fde1d070934d1c2600d6ecf6f33ae499b68ef568aa7b163db2 | NEURON | 1,470 | 76 | : Adaption of T-type calcium channel from Wang, X. J. et al. 1991;
: c.f. NMODL file in ModelDB:
: https://senselab.med.yale.edu/modeldb/showModel.cshtml?model=53893
:
: Note the temperature rate correction factors of 5 (for m) and 3
: (for h <-> s <-> d) have been applied to match the model described
: in the current-... |
8c4454849c516a81d7cd8d87185861f5b9fa85db69ae4b28d1cc4b4835b54428 | NEURON | 1,547 | 76 | scale_factor = 0.1 //the scale factor for EPSGs in both BCs and GCs
tstop=200
/*
xopen("GC_connection_Poisson_excitation_231229_mpi.hoc")
xopen("BC_excitatory_connection_231229_mpi.hoc")
xopen("BC-GC_inhibitory_synapse_231229.hoc")
*/
xopen("GC_BC template_231229.hoc")
objref GC
GC=new excitatory_cell()
geo... |
9eb4dacdaed1d5393e2b8384c09c8200c9eb66adc1250b1c165b60db94dec43f | NEURON | 1,547 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
35cfe6c04bc6ceeff893168dcae9740ef27b9886403a34b751f5e25598958043 | NEURON | 1,557 | 68 | :Comment : LVA ca channel. Note: mtau is an approximation from the plots
:Reference : : Avery and Johnston 1996, tau from Randall 1997
:Comment: shifted by -10 mv to correct for junction potential
:Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
NEURON... |
8fe6abbfd0d488c3bbcbb5a38971e01609b9e2b06bd606eff8347d26fd6dcbc6 | NEURON | 1,560 | 68 | :Comment : The transient component of the K current
:Reference : : Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats:subtypes and gradients,Korngreen and Sakmann, J. Physiology, 2000
:Comment : shifted -10 mv to correct for junction potential
:Comment: co... |
f7affabb5c5e1b88e93166e7675b08bac3b27d50716988adb7fc9224893a8145 | NEURON | 1,564 | 44 |
/*
//
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN P... |
2ac82640d2cb6177825d504bb3fc6130f57341d48793abe36c68f464a06ea9c2 | NEURON | 1,568 | 79 | :Reference :Colbert and Pan 2002
NEURON {
SUFFIX NaTa_t
USEION na READ ena WRITE ina
RANGE gNaTa_tbar, gNaTa_t, ina
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
gNaTa_tbar = 0.0000... |
99679c49c94fbd1d55ce3528c3359967aa545c31adb27660e5a9e61d44f9da52 | NEURON | 1,569 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
009e6dbd6e16e93ea3f426340de8592c21111e0fbfd7c1d09bc88ce92e759cff | NEURON | 1,570 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
2048a5eff614db60d7d192a7cccd7c08fbf13be91350666ed41cba3eae7c8174 | NEURON | 1,572 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
34893dab689d31d5e0b2b6408823bdccdf832a355c0668d294e8e54a9054cafe | NEURON | 1,572 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
51eb7a65c0755fda6983ce70776108a27d3706346cab319116694b5b014bafde | NEURON | 1,572 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
b47d97fe5bddea3d6bcc37551237f28d0aafa58a2a82646e38048f5455acf56b | NEURON | 1,575 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
5166842ab0bb0cd392978e93ac968ef2d62597fa41e1078e48b7dd3290de98e0 | NEURON | 1,578 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
e3e0d6af17be5abc1f6a33afcd3587015caec04878989b7e566eba1608c3f696 | NEURON | 1,601 | 77 | : Input current modeled by an Ornstein-Uhlenbeck process
: Sets non-specific current given mean, volatility and relaxation time
:
: Adapted from Jannik Luboeinski's example here: https://github.com/jlubo/arbor_ou_lif_example
:
: I_ou input current (nA)
: μ input current mean (nA)
: σ input current volatility (... |
3cb50fcf72e49df64802f5003df4787f5287acb5a9b57b66cfdd7ac6ecedfb91 | NEURON | 1,604 | 44 |
/*
Copyright (c) 2015 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJ... |
914a6b5ca0f50d7455457df6a7603a02bfbac0e039ccc47e92f47f929b46c0f1 | NEURON | 1,656 | 79 | :Reference :Colbert and Pan 2002
:comment: took the NaTa and shifted both activation/inactivation by 6 mv
NEURON {
SUFFIX NaTs2_t
USEION na READ ena WRITE ina
RANGE gNaTs2_tbar, gNaTs2_t, ina
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
... |
51244b03e61ffcff9bb50b083df18d24e2b8ddfbec4c369a26daaffb35c33428 | NEURON | 1,665 | 73 | :Comment : The persistent component of the K current
:Reference : : Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats:subtypes and gradients,Korngreen and Sakmann, J. Physiology, 2000
:Comment : shifted -10 mv to correct for junction potential
:Comment: c... |
1def553ba51db5fb1ec089445b3bc29ff6f2b9af86d98c0882adac5831aba303 | NEURON | 1,685 | 79 | COMMENT
Two state kinetic scheme synapse described by rise time tau1,
and decay time constant tau2. The normalized peak condunductance is 1.
Decay time MUST be greater than rise time.
The solution of A->G->bath with rate constants 1/tau1 and 1/tau2 is
A = a*exp(-t/tau1) and
G = a*tau2/(tau2-tau1)*(-exp(-t/tau1) + e... |
8e3f9648b61ac010f7ab57acfe2c90e0bf33e28701c6a919dac14c081bf6f584 | NEURON | 1,702 | 101 | : sample file
? another style of comments
NEURON {
THREADSAFE
SUFFIX test
USEION ca READ cai
USEION k WRITE ik READ ki
RANGE gkbar, ik, ek, ki, cai
GLOBAL minf, mtau, hinf, htau
}
STATE {
h (nA)
m r
}
UNITS {
(S) = (siemens)
(mV) = (millivolt)
(mA) = (milliamp)
(mo... |
a5ba993fbbfb435091b644c5565139e095a8c5c28b2f647c7ba4d5f59328b14a | NEURON | 1,761 | 85 | COMMENT
Two state kinetic scheme synapse described by rise time tau1,
and decay time constant tau2. The normalized peak conductance is 1.
Decay time MUST be greater than rise time.
The solution of A->G->bath with rate constants 1/tau1 and 1/tau2 is
A = a*exp(-t/tau1) and
G = a*tau2/(tau2-tau1)*(-exp(-t/tau1) ... |
064176660f7e9cb2115e4971cd45551602450f9121b8c7a6a5ed836764d62766 | NEURON | 1,816 | 69 | objref PC, PCvode
PC= new ParallelContext()
PC.nthread(256)
dt=.1
//PC.runworker()
RNGseed=31123
number_of_axon=2500 //2500 axons, producing a connection probability of 2% (Scharfman, 2009)
input_sample_size = 50 //how many axons each GC sample from
number_of_input=25 //each axon produce 75 inputs that are distributed... |
21b6fd00019eaa36b4679ac2636578c7eb012f05c1d7e7e2528585a5bbeffc20 | NEURON | 1,816 | 69 | objref PC, PCvode
PC= new ParallelContext()
PC.nthread(256)
dt=.1
//PC.runworker()
RNGseed=31123
number_of_axon=2500 //2500 axons, producing a connection probability of 2% (Scharfman, 2009)
input_sample_size = 50 //how many axons each GC sample from
number_of_input=25 //each axon produce 75 inputs that are distributed... |
2ab1edd8781deb8826ddefdab5b9df32d106deb339e3ae69230ffd1243a3d6cb | NEURON | 1,816 | 69 | objref PC, PCvode
PC= new ParallelContext()
PC.nthread(256)
dt=.1
//PC.runworker()
RNGseed=31123
number_of_axon=2500 //2500 axons, producing a connection probability of 2% (Scharfman, 2009)
input_sample_size = 50 //how many axons each GC sample from
number_of_input=25 //each axon produce 75 inputs that are distributed... |
30e1116240da071992ac6b759cbfdeff66acfdcdf5d8c39fe194e8cc8ea4a3d8 | NEURON | 1,816 | 69 | objref PC, PCvode
PC= new ParallelContext()
PC.nthread(256)
dt=.1
//PC.runworker()
RNGseed=31123
number_of_axon=2500 //2500 axons, producing a connection probability of 2% (Scharfman, 2009)
input_sample_size = 50 //how many axons each GC sample from
number_of_input=25 //each axon produce 75 inputs that are distributed... |
5c674b4eb818324544db726e9b70512bd5103534d14cd358b8c0afde1de5fca0 | NEURON | 1,816 | 69 | objref PC, PCvode
PC= new ParallelContext()
PC.nthread(256)
dt=.1
//PC.runworker()
RNGseed=31123
number_of_axon=2500 //2500 axons, producing a connection probability of 2% (Scharfman, 2009)
input_sample_size = 50 //how many axons each GC sample from
number_of_input=25 //each axon produce 75 inputs that are distributed... |
5d3f4ed75b947c5b68d63925d0f8d54fe98f819ad09e4a02950cc92988157b71 | NEURON | 1,816 | 69 | objref PC, PCvode
PC= new ParallelContext()
PC.nthread(256)
dt=.1
//PC.runworker()
RNGseed=31123
number_of_axon=2500 //2500 axons, producing a connection probability of 2% (Scharfman, 2009)
input_sample_size = 50 //how many axons each GC sample from
number_of_input=25 //each axon produce 75 inputs that are distributed... |
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