sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
4fde1649760d9253521d6f6d076eda6daca0f87d5c151861ee4fa1e0eb1cce7f | Python | 216 | 11 | """test_em.py"""
import impyute as impy
from impyute.ops.testing import return_na_check
SHAPE = (5, 5)
def test_em_(test_data):
data = test_data(SHAPE)
imputed = impy.em(data)
return_na_check(imputed)
|
54d1b309531f5d6655ba8c6aeeeb3e93f6368ad775a7a72f208622e860773ab1 | Python | 216 | 8 | # from brainways.utils.setup import BrainwaysSetup
# def test_setup():
# BrainwaysSetup(
# atlas_names=["whs_sd_rat_39um", "allen_mouse_25um"],
# progress_callback=lambda x: None,
# ).run()
|
6e95797f46765844bcd02fb0e41a3487cbf896f00afa6b3969afc8f308d0191e | Python | 216 | 8 | """Import all submodules of admet_ai."""
__version__ = "2.0.1"
from admet_ai.admet_model import ADMETModel
from admet_ai.admet_predict import admet_predict
__all__ = ["ADMETModel", "admet_predict", "__version__"]
|
2f8defde9c530d8eb9f99cd91b7739a16033148e48f225a8bb7b5a9a059e27ce | Python | 217 | 5 | # Copyright (c) Meta Platforms, Inc. and affiliates. All Rights Reserved
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
|
5f1ff58e9acc561f69f196d87f1a0754cf0d29a98fab4094f4e932905b929f15 | Python | 217 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('AdvProp_efficientnet-b8')
assert model.identifier == 'AdvProp_efficientnet-b8' |
8f0ea29eed68942d4f98448d32d1d954af82866d06aae546e4b76998e1be18dc | Python | 217 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('AdvProp_efficientnet-b2')
assert model.identifier == 'AdvProp_efficientnet-b2' |
9d174fd272e60d9e2d8e288c735b62c2297d80d2e2e049126ad4f81a9fea254e | Python | 217 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('AdvProp_efficientnet-b4')
assert model.identifier == 'AdvProp_efficientnet-b4' |
a14d4cc61b2d1057b9b72f2c480954d94ec910d16fd5d1fe54bf1b55fa79bcda | Python | 217 | 8 | """test_buck_iterative.py"""
import impyute as impy
from impyute.ops.testing import return_na_check
def test_buck_iter(buck_test_data):
imputed = impy.buck_iterative(buck_test_data)
return_na_check(imputed)
|
a4f5de99d042911c1888345654f69aced884be855af1425988d2d430005b73b0 | Python | 217 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('AdvProp_efficientnet-b7')
assert model.identifier == 'AdvProp_efficientnet-b7' |
21c7f98dc5d9bd650e6e8e6db273a2427f6c78f46f609f02352c1d6f5558e0be | Python | 218 | 8 | from pathlib import Path
from brainways.utils.io_utils.readers.qupath_reader import QupathReader
def test_qupath_reader(test_image_path: Path):
reader = QupathReader(test_image_path)
reader.get_image_data()
|
44ca9707836a9bb04e5c3c020aef14e4bc8928fe627290760d70295432be59d8 | Python | 218 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('dinov2_vitl14_lc_res336')
assert model.identifier == 'dinov2_vitl14_lc_res336'
|
a2ac4cfba99b43d7ad591656d3f0b8c9ee5cd388cda4d34c4548a0a3b4ae1267 | Python | 218 | 4 | from GEASO.alignment.coarse_to_fine import coarse_to_fine_alignment
from GEASO.alignment.data_interpolate import interpolate_displacement_field
__all__ = ["coarse_to_fine_alignment", "interpolate_displacement_field"]
|
fbe41d247a366d82c1584fc7a52991ab615719fb704339eddaeddcc2c2563ed3 | Python | 218 | 14 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Created on Tue Apr 18 15:18:10 2017
@author: shahidm
"""
from os.path import realpath, join, abspath, dirname
# defaults
SCRIPT_PATH = dirname(realpath(__file__))
|
0c4619ff73d633de936fdef3d40be76563a5983fcf9b4959ee601decd16c6de2 | Python | 219 | 8 | # This file is part of connectome-manipulator.
#
# SPDX-License-Identifier: Apache-2.0
# Copyright (c) 2024 Blue Brain Project/EPFL
"""connectome_manipulator."""
from connectome_manipulator.version import __version__
|
40d9019bff73312062f5018161fee14d0be463fbabdb467bbd801e37c399598a | Python | 219 | 5 | from .MLP_mod_application import create_mlp
from .MLP_mod_application import create_base_trans
from .MLP_mod_application import scale_data_teil
from .MLP_mod_application import run_valid2_parallel
from .openAI import * |
4a62b2479992de4b88933f667928fc17be2390abf448c8504eb6250bda299426 | Python | 219 | 15 | #!/usr/bin/env python
"""
Print the number of bases in a nib file.
usage: %prog nib_file
"""
import sys
from bx.seq import nib as seq_nib
with open(sys.argv[1]) as f:
nib = seq_nib.NibFile(f)
print(nib.length)
|
524fe3b2cd15ad4ef80f4f2c3d2a5cd4a7d3ff9ca0b6be531a88f96f97ac85ba | Python | 219 | 2 | print ("Some of the content in this tutorial may be outdated, however it is an amazing tutorial nonetheless: https://github.com/Justin1904/CMU-MultimodalSDK-Tutorials")
print ("Special thanks to Zhun Liu @ justin1904")
|
653aaf6494bf65cc6937b27c3ac3ee793c9a259d44b902424b43fddcbd231b61 | Python | 219 | 5 | from .base_distance import BaseDistance
from .cosine_similarity import CosineSimilarity
from .dot_product_similarity import DotProductSimilarity
from .lp_distance import LpDistance
from .snr_distance import SNRDistance
|
6a81f188339cd0402cc421b3f9b7b27b7dd9c2208732d82968ac846a24c66e78 | Python | 219 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('evresnet_50_4_no_mapping')
assert model.identifier == 'evresnet_50_4_no_mapping' |
c860ec2a1a304728ad0e26068a850d817057990c29ad963804cbd9df3e513088 | Python | 219 | 10 | import torch.nn as nn
class View(nn.Module):
def __init__(self, size):
super(View, self).__init__()
self.size = size
def forward(self, tensor):
return tensor.view(self.size)
|
1b087dd6503854a1c482fe3bb29b481f992f9e8483348548d0157241ef2343b4 | Python | 220 | 4 | import warnings
warnings.filterwarnings("ignore", message="numpy.dtype size changed")
warnings.filterwarnings("ignore", message="numpy.ufunc size changed")
warnings.filterwarnings("ignore", message="DeprecationWarning")
|
349e803e32a12479380c8a30851c5e62081ab025a75db77de74a2e7a525b2fdb | Python | 220 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('convnext_base_fb_in1k')
assert model.identifier == 'convnext_base_fb_in1k' |
7cae71169245da70023b817c405d689cc497e7c699851b2ed52fd00d2998c6d6 | Python | 220 | 8 | # Copyright (c) Meta Platforms, Inc. and affiliates. All Rights Reserved
import os
is_enabled = False
if os.getenv("USE_PERFLIB", "1") == "1":
# print("Enabled the use of perflib.\n", end="")
is_enabled = True
|
a80d100bcca552ca49eb1ed7751055ab32323d7643a5fb0a22305b13860c19a2 | Python | 220 | 6 | def test_qtwebchannel():
"""Test the qtpy.QtWebChannel namespace"""
from qtpy import QtWebChannel
assert QtWebChannel.QWebChannel is not None
assert QtWebChannel.QWebChannelAbstractTransport is not None
|
071581aea6f6163568ca3ef118a842a397d6526297691a1e922b7188796ef0b6 | Python | 221 | 5 | from .trainer import ModelTrainer
from .distillation_trainer import ModelDistiller
from .finetune_trainer import ModelFinetuner
from .reinforcement_trainer import ReinforcementTrainer
from .swaf_trainer import SWAFTrainer |
3d4d52c5d0b89480b0e0ad901bb89e769ccf3a7cdfec52b7503b559a12fe13f0 | Python | 221 | 7 | from dtiplayground.dmri.common.tools.base import ExternalToolWrapper
class ITKTransformTools(ExternalToolWrapper):
def __init__(self,binary_path= None, **kwargs):
super().__init__(binary_path, **kwargs)
|
5f0b78fc8a07e575fded364917a215ebb440df00d90c789d9a3d801fee6f1223 | Python | 221 | 6 | # -*- coding: utf-8 -*-
# Copyright (c) Meta Platforms, Inc. and affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
|
b509a91bcc151ec6a35a465d983e9c8c6a21278922eb88925d04fc258fddc9da | Python | 221 | 7 | # Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license
from .predict import OBBPredictor
from .train import OBBTrainer
from .val import OBBValidator
__all__ = "OBBPredictor", "OBBTrainer", "OBBValidator"
|
cdfe4d86b69d2156d8391753d784ef473b6bb86ef3c4ced5ef9ff1747fbdd771 | Python | 221 | 9 | from .. import __version__
from ..log_cfg import logger, unconfigure_logging, enable_logging
from . import test
from . import enrich
from . import fit
from . import stats
from . import utils
from .. import pkg_constants
|
dab0678676efc7a68787edb3af8f7135f2d55fe4f472f336b45a5edcd80cf367 | Python | 222 | 8 | from PyInstaller.utils.hooks import collect_data_files, logger
datas = collect_data_files("PyMca5.PyMcaData")
datas += [
(src, datas[0][1])
for src, des in collect_data_files("fisx")
if src.endswith(".dat")
]
|
334479c7db025ecc4d77130e82659c625202a1d9b9feeb2711d712539633b6c0 | Python | 223 | 9 | from PyInstaller.utils.hooks import logger, get_module_file_attribute
import os
def pre_safe_import_module(psim_api):
import PyMca5.PyMca as PyMca
for p in PyMca.__path__:
psim_api.append_package_path(p)
|
76653394d0488f7974cd3ca56d42958495a3dcba15d529d568b9789bcac07c97 | Python | 223 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('antialiased-rnext101_32x8d')
assert model.identifier == 'antialiased-rnext101_32x8d' |
04c7f1377318e2c4f368fdbaa8ca01c92ded327945c157fb802acd6bb2d59681 | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_09')
assert model.identifier == 'alexnet_training_seed_09'
|
05879d647c72debbed290c3380e01fcda4ca29607ac89c5a19cd923d341b3c75 | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_03')
assert model.identifier == 'alexnet_training_seed_03'
|
1d57aa2acc8e3bb6481662200b0060523375da86f4cc1a838e9a9b14f0e1cac0 | Python | 224 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('compact_resnet50_robust_V4')
assert model.identifier == 'compact_resnet50_robust_V4'
|
2032dbfea263b328b0a14283d563af9376b2e2dfef068dffcdb39880aa499167 | Python | 224 | 8 | from tests.utils import pytest_importorskip
def test_qtpdfwidgets():
"""Test the qtpy.QtPdfWidgets namespace"""
QtPdfWidgets = pytest_importorskip("qtpy.QtPdfWidgets")
assert QtPdfWidgets.QPdfView is not None
|
2e684600c63378a328063d27e61e29da69546e606daefb40236441e1aab2e085 | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_06')
assert model.identifier == 'alexnet_training_seed_06'
|
377da21bf10697d7768a8f9d1db33708213b1abbf7db86260b8d204214496aaf | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_10')
assert model.identifier == 'alexnet_training_seed_10'
|
3818b6dacb5ed30614e0e8d5e91f952b564d72b9e0d2ad21c16e28f26009554b | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_04')
assert model.identifier == 'alexnet_training_seed_04'
|
585917b84874acfae0f260ef345bfb20fec26d91b356eb0ad93afdd65d095e1b | Python | 224 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('compact_resnet50_robust_IT')
assert model.identifier == 'compact_resnet50_robust_IT'
|
8546a25f0ec940738e5cf563ecb514ab5f8398bd83cf69bee5df1f9baddd7630 | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_08')
assert model.identifier == 'alexnet_training_seed_08'
|
ac526afb74398ad5929c527e80677c3fb30c7c91a78194ed7c33e768c7de7ba7 | Python | 224 | 7 | """
Support for dealing with (genome scale) sequence alignments. See `core` for
the abstract alignment classes and `maf`, `axt`, and `lav` for readers and
writers in various formats.
"""
from bx.align.core import * # noqa
|
b917f7949145a44b2903b62fe3d468b568f72d4f6cd4f85afc192f2b298e18be | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_05')
assert model.identifier == 'alexnet_training_seed_05'
|
c3125b65a8397a2b621fef11f90d9eca33e8ca3b130be03a7a300c86345d4c4d | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_07')
assert model.identifier == 'alexnet_training_seed_07'
|
d7a3d1d20a03e64a1fa30e5f48a088128a1fa28a864f81a10554631dd4159f77 | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_02')
assert model.identifier == 'alexnet_training_seed_02'
|
d7b4e67c4349c34ddfbe7839e541abf7f15de220d905ead34bfdd5e596502fc2 | Python | 224 | 5 | from PyInstaller.utils.hooks import collect_dynamic_libs
# The hidden import is necessary for SciPy 1.0.1+.
hiddenimports = ["scipy._lib.messagestream"]
binaries = [(src, ".") for src, des in collect_dynamic_libs("scipy")]
|
e3a0180b19136ed793b39e173c44458006a4c63bf59856d1e3897405a49e631c | Python | 224 | 9 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('alexnet_training_seed_01')
assert model.identifier == 'alexnet_training_seed_01'
|
17834442ab5c54a1718fdec387bae49f656edc91b811afe7c6aac107ef4fd6f7 | Python | 225 | 7 | # Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license
from .model import RTDETR
from .predict import RTDETRPredictor
from .val import RTDETRValidator
__all__ = "RTDETR", "RTDETRPredictor", "RTDETRValidator"
|
3a4ed24976d734349948c00d12c1c615ed040a5603e361021c5cf5a87b4f5afc | Python | 225 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('abl_light_evresnet_50_457_0')
assert model.identifier == 'abl_light_evresnet_50_457_0' |
b5ed731e567b2b8b9a98dce3c84e8614ef538799be88e86de88df5ee1ac97207 | Python | 225 | 8 | # import self-written scripts to get random positions and manage exp
import exp_utils
LOCATION = '7tscanner'
if __name__ == '__main__':
exp_utils.run_exp(LOCATION, exp_name='harveyspokenvisual_congruent', train=False)
|
c3fbbb9b3fdaf185c93d6430e723c7e66b1aa5217ecc0caf133ee94526d8c257 | Python | 225 | 5 | # flake8: noqa
from deepreg.model.backbone.global_net import GlobalNet
from deepreg.model.backbone.interface import Backbone
from deepreg.model.backbone.local_net import LocalNet
from deepreg.model.backbone.u_net import UNet
|
e4b60da1a1a18b36ba7690d97b591ac60b42654c863188a9d14244ff52138e48 | Python | 225 | 21 |
snn_time_window = 2
snn_leakage_factor = 0.2
snn_fire_thresh = 0.5
snn_half_beta = 0.5
EPOCH = 200
MILESTONES = [60, 120, 160]
Resnet_Use_BN = True
CIFAR_USE_SIZE_32 = True
CIFAR_USE_BN = False
ncu_profile = False
|
9725c97080f27ddae3fc925bb04235f33fade142a2d66a4b4f2b77892d98bd3b | Python | 226 | 9 | """ Impyute specific error messages """
class BadInputError(Exception):
"Error thrown when input args don't match spec"
pass
class BadOutputError(Exception):
"Error thrown when outputs don't match spec"
pass
|
098fd7f89fc41c77ca8b18b48d8b0fee10f7a6a2179f6f5f4c6304741152813d | Python | 227 | 8 | import datajoint as dj
from . import common
from distutils.version import StrictVersion
assert StrictVersion(dj.__version__) >= StrictVersion('0.2.5')
schema = dj.schema('common_psy', locals())
schema.spawn_missing_classes()
|
2399161b24f3057b087fd2b05a39375bde7d3127bcad973caccf3f45e8720c2d | Python | 227 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('cvt_cvt-13-384-in1k_4_LucyV4')
assert model.identifier == 'cvt_cvt-13-384-in1k_4_LucyV4' |
4ad224d72f38a9e5ca37f760ffcf6aaeabe761c9238910436b32188770dd261a | Python | 227 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('cvt_cvt-21-384-in1k_4_LucyV4')
assert model.identifier == 'cvt_cvt-21-384-in1k_4_LucyV4' |
7ff811358903ff8b713411db6a70311271aaccbc06a4037e503e4ea3e982769e | Python | 227 | 8 | # -*- coding: utf-8 -*-
from . import corpus, data, field, fn, metric
from .embedding import Embedding
from .vocab import Vocab
__all__ = ['Corpus', 'Embedding', 'Vocab',
'corpus', 'data', 'field', 'fn', 'metric']
|
83f5d3c4561432ff056a0996464f9d4f0e04e96669e655706c121553bebc6a2b | Python | 227 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('cvt_cvt-13-224-in1k_4_LucyV4')
assert model.identifier == 'cvt_cvt-13-224-in1k_4_LucyV4' |
c47267960739ffef8fe88d552c77ecf748deba164b3199c9016675d362b97c2e | Python | 227 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('cvt_cvt-21-224-in1k_4_LucyV4')
assert model.identifier == 'cvt_cvt-21-224-in1k_4_LucyV4' |
ccdc651835347ae7208df055e24e45e3a3e6dd5ac4ff4943e85230dcad610532 | Python | 227 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('abl_pcells_evresnet_50_457_0')
assert model.identifier == 'abl_pcells_evresnet_50_457_0' |
cec8e3714d03d1a2058a67b362906aa4309e764fcd1f9c6be35105336ed01c46 | Python | 227 | 7 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('fixres_resnext101_32x48d_wsl')
assert model.identifier == 'fixres_resnext101_32x48d_wsl'
|
ef67e396e2c29fc54a535e8db9ad7f8b9dd37ce3e67e36656f4bca383435c31b | Python | 227 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('abl_mcells_evresnet_50_457_0')
assert model.identifier == 'abl_mcells_evresnet_50_457_0' |
f06a6132f9606934ad933e61995d32119ec45ba25359ba956a1e86a9c74cff49 | Python | 227 | 9 | # Copyright (C) CVAT.ai Corporation
#
# SPDX-License-Identifier: MIT
import pytest
CACHE = (pytest.param(True, id="cache", marks=pytest.mark.cache),)
FILE_SYSTEM = (pytest.param(False),)
STORAGE_METHODS = CACHE + FILE_SYSTEM
|
f1249ce147914d04c948ae18cccd5cda127bc4aaa2366f344fd3d97692a1b1fd | Python | 227 | 8 | # import self-written scripts to get random positions and manage exp
import exp_utils
LOCATION = '7tscanner'
if __name__ == '__main__':
exp_utils.run_exp(LOCATION, exp_name='harveyspokenvisual_incongruent', train=False)
|
ffd3852e3d7d5f0bc91c147142d556e4257baef27fde10cf13dee68a2b74b0f7 | Python | 227 | 7 | # Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license
from .predict import PosePredictor
from .train import PoseTrainer
from .val import PoseValidator
__all__ = "PosePredictor", "PoseTrainer", "PoseValidator"
|
0a87dd4b85ab4f2f1f59f3a14e8de83487ca9f03954486478a5fbe6dbc27442d | Python | 228 | 13 | from abc import ABC, abstractmethod
from typing import Any
class N4BiasCorrector(ABC):
@abstractmethod
def correct(
self,
input_img_path: Any,
output_img_path: Any,
) -> None:
pass
|
cb949ad381741526b85b3a6dc948674f443c56b9c1f92b47e860dd6f117bbc45 | Python | 228 | 8 | """
SQL utilities for PRSedm — includes helper functions for locating/downloading the
variants.db file used for diabetes PRS scoring.
"""
from .get_dm_sql import get_snp_db, get_dm_sql
__all__ = ["get_snp_db", "get_dm_sql"]
|
0e3ea8ec63422426ab3acb275feaa519bbc43a7d3a69b821fbea8e46743b3b84 | Python | 229 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('custom_model_cv_18_dagger_408')
assert model.identifier == 'custom_model_cv_18_dagger_408' |
ab6b0373a5bbc849fad66251267469e25594358e5e4b6937e5ff3e411e8c100c | Python | 229 | 21 | # -*- coding: utf-8 -*-
def test_get_sh_order_and_fullness():
# toDO
pass
def test_sh_basis():
# toDO
pass
def test_get_maximas():
# toDO
pass
def test_get_sphere_neighbours():
# toDO
pass
|
b49de7c5acd5fdc7dd1c02279e30d31ddd6d2af874c861babd13a19555ce5664 | Python | 229 | 7 | from brainscore_core.supported_data_standards.brainio.assemblies import DataAssembly
from brainscore_core import Score
class Ceiling:
def __call__(self, assembly: DataAssembly) -> Score:
raise NotImplementedError()
|
bea5a8286741fd6992cb1d002fcc33d761b45bd63d5c015032eee6fa64f7241c | Python | 230 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('dinov2_vitl14_reg_lc_featread')
assert model.identifier == 'dinov2_vitl14_reg_lc_featread'
|
c9079e2f05f791fcae504027b33fac9aa86a47ab88128c206643eaadc8771250 | Python | 230 | 13 | from dataclasses import dataclass
from pathlib import Path
from typing import Union
import dask.array
import numpy as np
@dataclass
class ImageEntry:
image: Union[np.ndarray, dask.array.Array]
path: Path
scene: int
|
ee699c0acbc9d0da68f840fbeddb229856834ce98e5024b413384f52c63d0992 | Python | 230 | 11 | """
HarveST: A Graph Neural Network for Spatial Transcriptomics Clustering
"""
from .core import Harvest
__version__ = "1.0.0"
__author__ = "Junning"
__email__ = "786951979@qq.com"
__all__ = ["Harvest", "SpatialGeneDiscovery"] |
145f4f85417e62fe815f77d36aa47132c66763cf072b5a357b188e50c251fd14 | Python | 231 | 9 | """Run from a checkout without installing the package."""
import sys
from pathlib import Path
sys.path.insert(0, str(Path(__file__).resolve().parents[1]))
from openplant.training import main
if __name__ == "__main__":
main()
|
2aef3d172fd7f2893760f1146a38d46798b83b4f23749323247b7edd9f7d16b9 | Python | 231 | 7 | # Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license
from .model import FastSAM
from .predict import FastSAMPredictor
from .val import FastSAMValidator
__all__ = "FastSAM", "FastSAMPredictor", "FastSAMValidator"
|
2ff84e026ba476322adc3e621b02824a51d887c192517415d817feaa29aed122 | Python | 231 | 7 | # -*- coding: utf-8 -*-
"""
Analysis and statistics tools not in standard python packages.
"""
#:copyright: Copyright 2015 by Christoph Kirst, The Rockefeller University, New York City
#:license: GNU, see LICENSE.txt for details.
|
50d47464c50249489ed89f2203717f5cb71cec9c84403ac0a4b1c7afbb4419b4 | Python | 231 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('abl_contrast_evresnet_50_457_0')
assert model.identifier == 'abl_contrast_evresnet_50_457_0' |
97d63262430e4c12e4c4fbe73557ee456280f6dd68b3ff2241be147de2a180b9 | Python | 231 | 7 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('deit3_base_patch16_224_fb_in1k')
assert model.identifier == 'deit3_base_patch16_224_fb_in1k'
|
c8a5dad504bda9ea4a1a1ce33306a5da67e91e763335b535be8d922fa488e631 | Python | 231 | 7 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('convnext_base_fb_in22k_ft_in1k')
assert model.identifier == 'convnext_base_fb_in22k_ft_in1k'
|
048347954d817f714d24e9aab90e939dffe34c39bf89570d8d74096087c0fce1 | Python | 232 | 10 | # -*- coding: utf-8 -*-
# @Author : LG
from PyQt5 import QtWidgets
class RightButtonMenu(QtWidgets.QMenu):
def __init__(self, mainwindow):
super(RightButtonMenu, self).__init__()
self.mainwindow = mainwindow
|
ce9625169eb17e79a25963e0ff352c2f0d5ed6aa8508c04d4ba8747ccff580c3 | Python | 232 | 10 | """ChemGraph UI Package.
This package contains the Streamlit web application for ChemGraph.
The CLI has been moved to ``chemgraph.cli``.
"""
try:
from chemgraph import __version__
except Exception:
__version__ = "unknown"
|
e768ad837a83dba84bae0b019fa80ef290e9ffb838899d834167b3c777e679d3 | Python | 232 | 15 | #! /usr/bin/env python3
# -*- coding: utf-8 -*-
"""
Synonym for scil_NODDI_priors
"""
from scilpy.cli.scil_NODDI_priors import main as noddi_priors_main
def main():
noddi_priors_main()
if __name__ == "__main__":
main()
|
1b9334b82ef390baa49048e2597c7daa74c2f156888cf02531360f41e9ad1733 | Python | 233 | 7 | # Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license
from .predict import DepthPredictor
from .train import DepthTrainer
from .val import DepthValidator
__all__ = "DepthPredictor", "DepthTrainer", "DepthValidator"
|
2d96285e66e3c58909b84fab5ff12cea39bf5c6a0a7cf9deb17c5209c433e06d | Python | 233 | 9 | """Run from a checkout without installing the package."""
import sys
from pathlib import Path
sys.path.insert(0, str(Path(__file__).resolve().parents[1]))
from openplant.evaluation import main
if __name__ == "__main__":
main()
|
ecaea7f904ad95273ce689195ce0221bed38341205b9e080edf604f72b835a4b | Python | 233 | 9 | from config.config import settings
ROOT = settings['root']
DATA_DIR = settings['data_dir']
MODEL_DIR = settings['model_dir']
OUTPUT_DIR = settings['output_dir']
FIGURE_DIR = settings['figure_dir']
SPLIT_DIR = settings['split_dir']
|
4ce949114fe329d5ef834fa559689705827e0f51e4aa7ad67f35da9432d94881 | Python | 234 | 11 | """
SMART: Spatial multi-omic aggregation using graph neural networks and metric learning
"""
__version__ = "0.1.1"
import smart.build_graph
import smart.layer
import smart.MNN
import smart.model
import smart.train
import smart.utils |
c1449907bf3bc758f605c89cc10e8d47cccace0899f7e4579608acc19f3e5eee | Python | 234 | 16 | """# Basic example
A basic example using magicgui.
"""
from magicgui import magicgui
@magicgui
def example(x: int, y="hi"):
"""Basic example function."""
return x, y
example.changed.connect(print)
example.show(run=True)
|
c9def6b1207f887e6a5f67b8b93686a2800c08d8b71b35abf252d1eadaa074d9 | Python | 234 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('convnext_large_in22k_supervised')
assert model.identifier == 'convnext_large_in22k_supervised'
|
5c0ee41820b35f2331c19c6025d55b184fb0c64a7cda1eec12811ea64f415ff5 | Python | 235 | 14 | #!/usr/bin/env python
"""
Read a file from stdin, split each line and write fields one per line to
stdout.
TODO: is this really that useful?
"""
import sys
for line in sys.stdin:
for field in line.split():
print(field)
|
a85c3449c059f199e1e662859df7782881ba3f67794d76d796c5c39118785b1d | Python | 235 | 5 | from brainscore_vision import benchmark_registry
from .benchmark import ToliasCadena2017PLS, ToliasCadena2017Mask
benchmark_registry['Cadena2017-pls'] = ToliasCadena2017PLS
benchmark_registry['Cadena2017-mask'] = ToliasCadena2017Mask
|
3562cb54de179baa975dc02ac8e9066f9db22b8c4220463d251c44a3ba2b7f37 | Python | 236 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('Hojin_Jang_ResNet50_Standard')
assert model.identifier == 'Hojin_Jang_ResNet50_Standard'
|
31efe70a89eb29ea262bc08fcdc476c0680538f2e1a5eb3f3ff7be407ee7c452 | Python | 237 | 10 | from pydantic import BaseModel
from model.topic import TopicModel
from container import Container
from model.base_dao import BaseDao
class TopicDto(BaseModel):
id: str
topicNum: int
lastIndex: int
evaluation: TopicModel
|
5cf08ebe9f62615c35e5eafb1ea2daec73240b8dfe39d132869bfa7d9ffbf206 | Python | 237 | 9 | import matplotlib.pyplot as plt
import numpy as np
from typing import Union
def equidistant(cmap: Union[str, object] = 'tab20c', k: int = 20) -> np.ndarray:
'''
'''
return plt.get_cmap(cmap)(np.linspace(0, 1, k))[:,0:3] |
ddad48486564c7aac049cf3be0df62ae98e6c0dd6f24e475864995ca594ca9aa | Python | 237 | 6 | from .analysis import (compute_proportions,
fit_psychometric,
PsychometricRegression,
cumulative_gaussian,
weibull)
|
ff173d5b09402546180b9a5a36ae55618835b44f65084c88838397037bfd972c | Python | 237 | 8 | # Copyright (C) CVAT.ai Corporation
#
# SPDX-License-Identifier: MIT
from datetime import timedelta
GITHUB_STAR_PROMPT_COOLDOWN = timedelta(days=30)
GITHUB_STAR_PROMPT_POLICY = "cvat.apps.growth.policies.EnabledGitHubStarPromptPolicy"
|
60c4536971a6882316302b268bd60532bbc3f24bc1d3e3f7dfd201e2fd5074b9 | Python | 238 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('Hojin_Jang_ResNet50_Weak_blur')
assert model.identifier == 'Hojin_Jang_ResNet50_Weak_blur'
|
d663460f90e13467f75772566bfbe96a80909533e97bdcccafe1de64569418b8 | Python | 238 | 8 | import pytest
import brainscore_vision
@pytest.mark.travis_slow
def test_has_identifier():
model = brainscore_vision.load_model('convnext_tiny_imagenet1k_HAND')
assert model.identifier == 'convnext_tiny_imagenet1k_HAND'
|
570f4caba8e768b81ed032ddaec2c03f32c98f56214049c304293932f436e416 | Python | 239 | 11 | """test_random_imputation.py"""
import impyute as impy
from impyute.ops.testing import return_na_check
SHAPE = (3, 3)
def test_random_(test_data):
data = test_data(SHAPE)
imputed = impy.random(data)
return_na_check(imputed)
|
5ea9fb7151c52328da22fe24faec0b0c3ad430355f383cfc18f3e98dd95b1958 | Python | 239 | 12 | """
eTSC Data Package
Data loading and processing modules
"""
from .dataset import MRIDataset, get_dataloader, load_nifti_ras, resize_volume
__all__ = [
'MRIDataset',
'get_dataloader',
'load_nifti_ras',
'resize_volume',
]
|
a2062c3970e7674668a0d433d9fb7c28cfc3315b313dad72924c4ee9cbe90707 | Python | 239 | 10 | from os.path import join, dirname
from subprocess import call
from sys import exit, argv
def main():
exe_path = join(dirname(__file__), "../bin/dynamont-NT")
exit(call([exe_path] + argv[1:]))
if __name__ == "__main__":
main() |
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