sha256
stringlengths
64
64
language
stringclasses
28 values
size
int32
1
491k
lines
int32
1
23.2k
content
stringlengths
1
200k
4fde1649760d9253521d6f6d076eda6daca0f87d5c151861ee4fa1e0eb1cce7f
Python
216
11
"""test_em.py""" import impyute as impy from impyute.ops.testing import return_na_check SHAPE = (5, 5) def test_em_(test_data): data = test_data(SHAPE) imputed = impy.em(data) return_na_check(imputed)
54d1b309531f5d6655ba8c6aeeeb3e93f6368ad775a7a72f208622e860773ab1
Python
216
8
# from brainways.utils.setup import BrainwaysSetup # def test_setup(): # BrainwaysSetup( # atlas_names=["whs_sd_rat_39um", "allen_mouse_25um"], # progress_callback=lambda x: None, # ).run()
6e95797f46765844bcd02fb0e41a3487cbf896f00afa6b3969afc8f308d0191e
Python
216
8
"""Import all submodules of admet_ai.""" __version__ = "2.0.1" from admet_ai.admet_model import ADMETModel from admet_ai.admet_predict import admet_predict __all__ = ["ADMETModel", "admet_predict", "__version__"]
2f8defde9c530d8eb9f99cd91b7739a16033148e48f225a8bb7b5a9a059e27ce
Python
217
5
# Copyright (c) Meta Platforms, Inc. and affiliates. All Rights Reserved # All rights reserved. # This source code is licensed under the license found in the # LICENSE file in the root directory of this source tree.
5f1ff58e9acc561f69f196d87f1a0754cf0d29a98fab4094f4e932905b929f15
Python
217
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('AdvProp_efficientnet-b8') assert model.identifier == 'AdvProp_efficientnet-b8'
8f0ea29eed68942d4f98448d32d1d954af82866d06aae546e4b76998e1be18dc
Python
217
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('AdvProp_efficientnet-b2') assert model.identifier == 'AdvProp_efficientnet-b2'
9d174fd272e60d9e2d8e288c735b62c2297d80d2e2e049126ad4f81a9fea254e
Python
217
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('AdvProp_efficientnet-b4') assert model.identifier == 'AdvProp_efficientnet-b4'
a14d4cc61b2d1057b9b72f2c480954d94ec910d16fd5d1fe54bf1b55fa79bcda
Python
217
8
"""test_buck_iterative.py""" import impyute as impy from impyute.ops.testing import return_na_check def test_buck_iter(buck_test_data): imputed = impy.buck_iterative(buck_test_data) return_na_check(imputed)
a4f5de99d042911c1888345654f69aced884be855af1425988d2d430005b73b0
Python
217
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('AdvProp_efficientnet-b7') assert model.identifier == 'AdvProp_efficientnet-b7'
21c7f98dc5d9bd650e6e8e6db273a2427f6c78f46f609f02352c1d6f5558e0be
Python
218
8
from pathlib import Path from brainways.utils.io_utils.readers.qupath_reader import QupathReader def test_qupath_reader(test_image_path: Path): reader = QupathReader(test_image_path) reader.get_image_data()
44ca9707836a9bb04e5c3c020aef14e4bc8928fe627290760d70295432be59d8
Python
218
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('dinov2_vitl14_lc_res336') assert model.identifier == 'dinov2_vitl14_lc_res336'
a2ac4cfba99b43d7ad591656d3f0b8c9ee5cd388cda4d34c4548a0a3b4ae1267
Python
218
4
from GEASO.alignment.coarse_to_fine import coarse_to_fine_alignment from GEASO.alignment.data_interpolate import interpolate_displacement_field __all__ = ["coarse_to_fine_alignment", "interpolate_displacement_field"]
fbe41d247a366d82c1584fc7a52991ab615719fb704339eddaeddcc2c2563ed3
Python
218
14
#!/usr/bin/env python # -*- coding: utf-8 -*- """ Created on Tue Apr 18 15:18:10 2017 @author: shahidm """ from os.path import realpath, join, abspath, dirname # defaults SCRIPT_PATH = dirname(realpath(__file__))
0c4619ff73d633de936fdef3d40be76563a5983fcf9b4959ee601decd16c6de2
Python
219
8
# This file is part of connectome-manipulator. # # SPDX-License-Identifier: Apache-2.0 # Copyright (c) 2024 Blue Brain Project/EPFL """connectome_manipulator.""" from connectome_manipulator.version import __version__
40d9019bff73312062f5018161fee14d0be463fbabdb467bbd801e37c399598a
Python
219
5
from .MLP_mod_application import create_mlp from .MLP_mod_application import create_base_trans from .MLP_mod_application import scale_data_teil from .MLP_mod_application import run_valid2_parallel from .openAI import *
4a62b2479992de4b88933f667928fc17be2390abf448c8504eb6250bda299426
Python
219
15
#!/usr/bin/env python """ Print the number of bases in a nib file. usage: %prog nib_file """ import sys from bx.seq import nib as seq_nib with open(sys.argv[1]) as f: nib = seq_nib.NibFile(f) print(nib.length)
524fe3b2cd15ad4ef80f4f2c3d2a5cd4a7d3ff9ca0b6be531a88f96f97ac85ba
Python
219
2
print ("Some of the content in this tutorial may be outdated, however it is an amazing tutorial nonetheless: https://github.com/Justin1904/CMU-MultimodalSDK-Tutorials") print ("Special thanks to Zhun Liu @ justin1904")
653aaf6494bf65cc6937b27c3ac3ee793c9a259d44b902424b43fddcbd231b61
Python
219
5
from .base_distance import BaseDistance from .cosine_similarity import CosineSimilarity from .dot_product_similarity import DotProductSimilarity from .lp_distance import LpDistance from .snr_distance import SNRDistance
6a81f188339cd0402cc421b3f9b7b27b7dd9c2208732d82968ac846a24c66e78
Python
219
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('evresnet_50_4_no_mapping') assert model.identifier == 'evresnet_50_4_no_mapping'
c860ec2a1a304728ad0e26068a850d817057990c29ad963804cbd9df3e513088
Python
219
10
import torch.nn as nn class View(nn.Module): def __init__(self, size): super(View, self).__init__() self.size = size def forward(self, tensor): return tensor.view(self.size)
1b087dd6503854a1c482fe3bb29b481f992f9e8483348548d0157241ef2343b4
Python
220
4
import warnings warnings.filterwarnings("ignore", message="numpy.dtype size changed") warnings.filterwarnings("ignore", message="numpy.ufunc size changed") warnings.filterwarnings("ignore", message="DeprecationWarning")
349e803e32a12479380c8a30851c5e62081ab025a75db77de74a2e7a525b2fdb
Python
220
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('convnext_base_fb_in1k') assert model.identifier == 'convnext_base_fb_in1k'
7cae71169245da70023b817c405d689cc497e7c699851b2ed52fd00d2998c6d6
Python
220
8
# Copyright (c) Meta Platforms, Inc. and affiliates. All Rights Reserved import os is_enabled = False if os.getenv("USE_PERFLIB", "1") == "1": # print("Enabled the use of perflib.\n", end="") is_enabled = True
a80d100bcca552ca49eb1ed7751055ab32323d7643a5fb0a22305b13860c19a2
Python
220
6
def test_qtwebchannel(): """Test the qtpy.QtWebChannel namespace""" from qtpy import QtWebChannel assert QtWebChannel.QWebChannel is not None assert QtWebChannel.QWebChannelAbstractTransport is not None
071581aea6f6163568ca3ef118a842a397d6526297691a1e922b7188796ef0b6
Python
221
5
from .trainer import ModelTrainer from .distillation_trainer import ModelDistiller from .finetune_trainer import ModelFinetuner from .reinforcement_trainer import ReinforcementTrainer from .swaf_trainer import SWAFTrainer
3d4d52c5d0b89480b0e0ad901bb89e769ccf3a7cdfec52b7503b559a12fe13f0
Python
221
7
from dtiplayground.dmri.common.tools.base import ExternalToolWrapper class ITKTransformTools(ExternalToolWrapper): def __init__(self,binary_path= None, **kwargs): super().__init__(binary_path, **kwargs)
5f0b78fc8a07e575fded364917a215ebb440df00d90c789d9a3d801fee6f1223
Python
221
6
# -*- coding: utf-8 -*- # Copyright (c) Meta Platforms, Inc. and affiliates. # All rights reserved. # This source code is licensed under the license found in the # LICENSE file in the root directory of this source tree.
b509a91bcc151ec6a35a465d983e9c8c6a21278922eb88925d04fc258fddc9da
Python
221
7
# Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license from .predict import OBBPredictor from .train import OBBTrainer from .val import OBBValidator __all__ = "OBBPredictor", "OBBTrainer", "OBBValidator"
cdfe4d86b69d2156d8391753d784ef473b6bb86ef3c4ced5ef9ff1747fbdd771
Python
221
9
from .. import __version__ from ..log_cfg import logger, unconfigure_logging, enable_logging from . import test from . import enrich from . import fit from . import stats from . import utils from .. import pkg_constants
dab0678676efc7a68787edb3af8f7135f2d55fe4f472f336b45a5edcd80cf367
Python
222
8
from PyInstaller.utils.hooks import collect_data_files, logger datas = collect_data_files("PyMca5.PyMcaData") datas += [ (src, datas[0][1]) for src, des in collect_data_files("fisx") if src.endswith(".dat") ]
334479c7db025ecc4d77130e82659c625202a1d9b9feeb2711d712539633b6c0
Python
223
9
from PyInstaller.utils.hooks import logger, get_module_file_attribute import os def pre_safe_import_module(psim_api): import PyMca5.PyMca as PyMca for p in PyMca.__path__: psim_api.append_package_path(p)
76653394d0488f7974cd3ca56d42958495a3dcba15d529d568b9789bcac07c97
Python
223
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('antialiased-rnext101_32x8d') assert model.identifier == 'antialiased-rnext101_32x8d'
04c7f1377318e2c4f368fdbaa8ca01c92ded327945c157fb802acd6bb2d59681
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_09') assert model.identifier == 'alexnet_training_seed_09'
05879d647c72debbed290c3380e01fcda4ca29607ac89c5a19cd923d341b3c75
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_03') assert model.identifier == 'alexnet_training_seed_03'
1d57aa2acc8e3bb6481662200b0060523375da86f4cc1a838e9a9b14f0e1cac0
Python
224
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('compact_resnet50_robust_V4') assert model.identifier == 'compact_resnet50_robust_V4'
2032dbfea263b328b0a14283d563af9376b2e2dfef068dffcdb39880aa499167
Python
224
8
from tests.utils import pytest_importorskip def test_qtpdfwidgets(): """Test the qtpy.QtPdfWidgets namespace""" QtPdfWidgets = pytest_importorskip("qtpy.QtPdfWidgets") assert QtPdfWidgets.QPdfView is not None
2e684600c63378a328063d27e61e29da69546e606daefb40236441e1aab2e085
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_06') assert model.identifier == 'alexnet_training_seed_06'
377da21bf10697d7768a8f9d1db33708213b1abbf7db86260b8d204214496aaf
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_10') assert model.identifier == 'alexnet_training_seed_10'
3818b6dacb5ed30614e0e8d5e91f952b564d72b9e0d2ad21c16e28f26009554b
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_04') assert model.identifier == 'alexnet_training_seed_04'
585917b84874acfae0f260ef345bfb20fec26d91b356eb0ad93afdd65d095e1b
Python
224
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('compact_resnet50_robust_IT') assert model.identifier == 'compact_resnet50_robust_IT'
8546a25f0ec940738e5cf563ecb514ab5f8398bd83cf69bee5df1f9baddd7630
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_08') assert model.identifier == 'alexnet_training_seed_08'
ac526afb74398ad5929c527e80677c3fb30c7c91a78194ed7c33e768c7de7ba7
Python
224
7
""" Support for dealing with (genome scale) sequence alignments. See `core` for the abstract alignment classes and `maf`, `axt`, and `lav` for readers and writers in various formats. """ from bx.align.core import * # noqa
b917f7949145a44b2903b62fe3d468b568f72d4f6cd4f85afc192f2b298e18be
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_05') assert model.identifier == 'alexnet_training_seed_05'
c3125b65a8397a2b621fef11f90d9eca33e8ca3b130be03a7a300c86345d4c4d
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_07') assert model.identifier == 'alexnet_training_seed_07'
d7a3d1d20a03e64a1fa30e5f48a088128a1fa28a864f81a10554631dd4159f77
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_02') assert model.identifier == 'alexnet_training_seed_02'
d7b4e67c4349c34ddfbe7839e541abf7f15de220d905ead34bfdd5e596502fc2
Python
224
5
from PyInstaller.utils.hooks import collect_dynamic_libs # The hidden import is necessary for SciPy 1.0.1+. hiddenimports = ["scipy._lib.messagestream"] binaries = [(src, ".") for src, des in collect_dynamic_libs("scipy")]
e3a0180b19136ed793b39e173c44458006a4c63bf59856d1e3897405a49e631c
Python
224
9
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('alexnet_training_seed_01') assert model.identifier == 'alexnet_training_seed_01'
17834442ab5c54a1718fdec387bae49f656edc91b811afe7c6aac107ef4fd6f7
Python
225
7
# Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license from .model import RTDETR from .predict import RTDETRPredictor from .val import RTDETRValidator __all__ = "RTDETR", "RTDETRPredictor", "RTDETRValidator"
3a4ed24976d734349948c00d12c1c615ed040a5603e361021c5cf5a87b4f5afc
Python
225
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('abl_light_evresnet_50_457_0') assert model.identifier == 'abl_light_evresnet_50_457_0'
b5ed731e567b2b8b9a98dce3c84e8614ef538799be88e86de88df5ee1ac97207
Python
225
8
# import self-written scripts to get random positions and manage exp import exp_utils LOCATION = '7tscanner' if __name__ == '__main__': exp_utils.run_exp(LOCATION, exp_name='harveyspokenvisual_congruent', train=False)
c3fbbb9b3fdaf185c93d6430e723c7e66b1aa5217ecc0caf133ee94526d8c257
Python
225
5
# flake8: noqa from deepreg.model.backbone.global_net import GlobalNet from deepreg.model.backbone.interface import Backbone from deepreg.model.backbone.local_net import LocalNet from deepreg.model.backbone.u_net import UNet
e4b60da1a1a18b36ba7690d97b591ac60b42654c863188a9d14244ff52138e48
Python
225
21
snn_time_window = 2 snn_leakage_factor = 0.2 snn_fire_thresh = 0.5 snn_half_beta = 0.5 EPOCH = 200 MILESTONES = [60, 120, 160] Resnet_Use_BN = True CIFAR_USE_SIZE_32 = True CIFAR_USE_BN = False ncu_profile = False
9725c97080f27ddae3fc925bb04235f33fade142a2d66a4b4f2b77892d98bd3b
Python
226
9
""" Impyute specific error messages """ class BadInputError(Exception): "Error thrown when input args don't match spec" pass class BadOutputError(Exception): "Error thrown when outputs don't match spec" pass
098fd7f89fc41c77ca8b18b48d8b0fee10f7a6a2179f6f5f4c6304741152813d
Python
227
8
import datajoint as dj from . import common from distutils.version import StrictVersion assert StrictVersion(dj.__version__) >= StrictVersion('0.2.5') schema = dj.schema('common_psy', locals()) schema.spawn_missing_classes()
2399161b24f3057b087fd2b05a39375bde7d3127bcad973caccf3f45e8720c2d
Python
227
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('cvt_cvt-13-384-in1k_4_LucyV4') assert model.identifier == 'cvt_cvt-13-384-in1k_4_LucyV4'
4ad224d72f38a9e5ca37f760ffcf6aaeabe761c9238910436b32188770dd261a
Python
227
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('cvt_cvt-21-384-in1k_4_LucyV4') assert model.identifier == 'cvt_cvt-21-384-in1k_4_LucyV4'
7ff811358903ff8b713411db6a70311271aaccbc06a4037e503e4ea3e982769e
Python
227
8
# -*- coding: utf-8 -*- from . import corpus, data, field, fn, metric from .embedding import Embedding from .vocab import Vocab __all__ = ['Corpus', 'Embedding', 'Vocab', 'corpus', 'data', 'field', 'fn', 'metric']
83f5d3c4561432ff056a0996464f9d4f0e04e96669e655706c121553bebc6a2b
Python
227
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('cvt_cvt-13-224-in1k_4_LucyV4') assert model.identifier == 'cvt_cvt-13-224-in1k_4_LucyV4'
c47267960739ffef8fe88d552c77ecf748deba164b3199c9016675d362b97c2e
Python
227
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('cvt_cvt-21-224-in1k_4_LucyV4') assert model.identifier == 'cvt_cvt-21-224-in1k_4_LucyV4'
ccdc651835347ae7208df055e24e45e3a3e6dd5ac4ff4943e85230dcad610532
Python
227
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('abl_pcells_evresnet_50_457_0') assert model.identifier == 'abl_pcells_evresnet_50_457_0'
cec8e3714d03d1a2058a67b362906aa4309e764fcd1f9c6be35105336ed01c46
Python
227
7
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('fixres_resnext101_32x48d_wsl') assert model.identifier == 'fixres_resnext101_32x48d_wsl'
ef67e396e2c29fc54a535e8db9ad7f8b9dd37ce3e67e36656f4bca383435c31b
Python
227
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('abl_mcells_evresnet_50_457_0') assert model.identifier == 'abl_mcells_evresnet_50_457_0'
f06a6132f9606934ad933e61995d32119ec45ba25359ba956a1e86a9c74cff49
Python
227
9
# Copyright (C) CVAT.ai Corporation # # SPDX-License-Identifier: MIT import pytest CACHE = (pytest.param(True, id="cache", marks=pytest.mark.cache),) FILE_SYSTEM = (pytest.param(False),) STORAGE_METHODS = CACHE + FILE_SYSTEM
f1249ce147914d04c948ae18cccd5cda127bc4aaa2366f344fd3d97692a1b1fd
Python
227
8
# import self-written scripts to get random positions and manage exp import exp_utils LOCATION = '7tscanner' if __name__ == '__main__': exp_utils.run_exp(LOCATION, exp_name='harveyspokenvisual_incongruent', train=False)
ffd3852e3d7d5f0bc91c147142d556e4257baef27fde10cf13dee68a2b74b0f7
Python
227
7
# Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license from .predict import PosePredictor from .train import PoseTrainer from .val import PoseValidator __all__ = "PosePredictor", "PoseTrainer", "PoseValidator"
0a87dd4b85ab4f2f1f59f3a14e8de83487ca9f03954486478a5fbe6dbc27442d
Python
228
13
from abc import ABC, abstractmethod from typing import Any class N4BiasCorrector(ABC): @abstractmethod def correct( self, input_img_path: Any, output_img_path: Any, ) -> None: pass
cb949ad381741526b85b3a6dc948674f443c56b9c1f92b47e860dd6f117bbc45
Python
228
8
""" SQL utilities for PRSedm — includes helper functions for locating/downloading the variants.db file used for diabetes PRS scoring. """ from .get_dm_sql import get_snp_db, get_dm_sql __all__ = ["get_snp_db", "get_dm_sql"]
0e3ea8ec63422426ab3acb275feaa519bbc43a7d3a69b821fbea8e46743b3b84
Python
229
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('custom_model_cv_18_dagger_408') assert model.identifier == 'custom_model_cv_18_dagger_408'
ab6b0373a5bbc849fad66251267469e25594358e5e4b6937e5ff3e411e8c100c
Python
229
21
# -*- coding: utf-8 -*- def test_get_sh_order_and_fullness(): # toDO pass def test_sh_basis(): # toDO pass def test_get_maximas(): # toDO pass def test_get_sphere_neighbours(): # toDO pass
b49de7c5acd5fdc7dd1c02279e30d31ddd6d2af874c861babd13a19555ce5664
Python
229
7
from brainscore_core.supported_data_standards.brainio.assemblies import DataAssembly from brainscore_core import Score class Ceiling: def __call__(self, assembly: DataAssembly) -> Score: raise NotImplementedError()
bea5a8286741fd6992cb1d002fcc33d761b45bd63d5c015032eee6fa64f7241c
Python
230
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('dinov2_vitl14_reg_lc_featread') assert model.identifier == 'dinov2_vitl14_reg_lc_featread'
c9079e2f05f791fcae504027b33fac9aa86a47ab88128c206643eaadc8771250
Python
230
13
from dataclasses import dataclass from pathlib import Path from typing import Union import dask.array import numpy as np @dataclass class ImageEntry: image: Union[np.ndarray, dask.array.Array] path: Path scene: int
ee699c0acbc9d0da68f840fbeddb229856834ce98e5024b413384f52c63d0992
Python
230
11
""" HarveST: A Graph Neural Network for Spatial Transcriptomics Clustering """ from .core import Harvest __version__ = "1.0.0" __author__ = "Junning" __email__ = "786951979@qq.com" __all__ = ["Harvest", "SpatialGeneDiscovery"]
145f4f85417e62fe815f77d36aa47132c66763cf072b5a357b188e50c251fd14
Python
231
9
"""Run from a checkout without installing the package.""" import sys from pathlib import Path sys.path.insert(0, str(Path(__file__).resolve().parents[1])) from openplant.training import main if __name__ == "__main__": main()
2aef3d172fd7f2893760f1146a38d46798b83b4f23749323247b7edd9f7d16b9
Python
231
7
# Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license from .model import FastSAM from .predict import FastSAMPredictor from .val import FastSAMValidator __all__ = "FastSAM", "FastSAMPredictor", "FastSAMValidator"
2ff84e026ba476322adc3e621b02824a51d887c192517415d817feaa29aed122
Python
231
7
# -*- coding: utf-8 -*- """ Analysis and statistics tools not in standard python packages. """ #:copyright: Copyright 2015 by Christoph Kirst, The Rockefeller University, New York City #:license: GNU, see LICENSE.txt for details.
50d47464c50249489ed89f2203717f5cb71cec9c84403ac0a4b1c7afbb4419b4
Python
231
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('abl_contrast_evresnet_50_457_0') assert model.identifier == 'abl_contrast_evresnet_50_457_0'
97d63262430e4c12e4c4fbe73557ee456280f6dd68b3ff2241be147de2a180b9
Python
231
7
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('deit3_base_patch16_224_fb_in1k') assert model.identifier == 'deit3_base_patch16_224_fb_in1k'
c8a5dad504bda9ea4a1a1ce33306a5da67e91e763335b535be8d922fa488e631
Python
231
7
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('convnext_base_fb_in22k_ft_in1k') assert model.identifier == 'convnext_base_fb_in22k_ft_in1k'
048347954d817f714d24e9aab90e939dffe34c39bf89570d8d74096087c0fce1
Python
232
10
# -*- coding: utf-8 -*- # @Author : LG from PyQt5 import QtWidgets class RightButtonMenu(QtWidgets.QMenu): def __init__(self, mainwindow): super(RightButtonMenu, self).__init__() self.mainwindow = mainwindow
ce9625169eb17e79a25963e0ff352c2f0d5ed6aa8508c04d4ba8747ccff580c3
Python
232
10
"""ChemGraph UI Package. This package contains the Streamlit web application for ChemGraph. The CLI has been moved to ``chemgraph.cli``. """ try: from chemgraph import __version__ except Exception: __version__ = "unknown"
e768ad837a83dba84bae0b019fa80ef290e9ffb838899d834167b3c777e679d3
Python
232
15
#! /usr/bin/env python3 # -*- coding: utf-8 -*- """ Synonym for scil_NODDI_priors """ from scilpy.cli.scil_NODDI_priors import main as noddi_priors_main def main(): noddi_priors_main() if __name__ == "__main__": main()
1b9334b82ef390baa49048e2597c7daa74c2f156888cf02531360f41e9ad1733
Python
233
7
# Ultralytics 🚀 AGPL-3.0 License - https://ultralytics.com/license from .predict import DepthPredictor from .train import DepthTrainer from .val import DepthValidator __all__ = "DepthPredictor", "DepthTrainer", "DepthValidator"
2d96285e66e3c58909b84fab5ff12cea39bf5c6a0a7cf9deb17c5209c433e06d
Python
233
9
"""Run from a checkout without installing the package.""" import sys from pathlib import Path sys.path.insert(0, str(Path(__file__).resolve().parents[1])) from openplant.evaluation import main if __name__ == "__main__": main()
ecaea7f904ad95273ce689195ce0221bed38341205b9e080edf604f72b835a4b
Python
233
9
from config.config import settings ROOT = settings['root'] DATA_DIR = settings['data_dir'] MODEL_DIR = settings['model_dir'] OUTPUT_DIR = settings['output_dir'] FIGURE_DIR = settings['figure_dir'] SPLIT_DIR = settings['split_dir']
4ce949114fe329d5ef834fa559689705827e0f51e4aa7ad67f35da9432d94881
Python
234
11
""" SMART: Spatial multi-omic aggregation using graph neural networks and metric learning """ __version__ = "0.1.1" import smart.build_graph import smart.layer import smart.MNN import smart.model import smart.train import smart.utils
c1449907bf3bc758f605c89cc10e8d47cccace0899f7e4579608acc19f3e5eee
Python
234
16
"""# Basic example A basic example using magicgui. """ from magicgui import magicgui @magicgui def example(x: int, y="hi"): """Basic example function.""" return x, y example.changed.connect(print) example.show(run=True)
c9def6b1207f887e6a5f67b8b93686a2800c08d8b71b35abf252d1eadaa074d9
Python
234
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('convnext_large_in22k_supervised') assert model.identifier == 'convnext_large_in22k_supervised'
5c0ee41820b35f2331c19c6025d55b184fb0c64a7cda1eec12811ea64f415ff5
Python
235
14
#!/usr/bin/env python """ Read a file from stdin, split each line and write fields one per line to stdout. TODO: is this really that useful? """ import sys for line in sys.stdin: for field in line.split(): print(field)
a85c3449c059f199e1e662859df7782881ba3f67794d76d796c5c39118785b1d
Python
235
5
from brainscore_vision import benchmark_registry from .benchmark import ToliasCadena2017PLS, ToliasCadena2017Mask benchmark_registry['Cadena2017-pls'] = ToliasCadena2017PLS benchmark_registry['Cadena2017-mask'] = ToliasCadena2017Mask
3562cb54de179baa975dc02ac8e9066f9db22b8c4220463d251c44a3ba2b7f37
Python
236
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('Hojin_Jang_ResNet50_Standard') assert model.identifier == 'Hojin_Jang_ResNet50_Standard'
31efe70a89eb29ea262bc08fcdc476c0680538f2e1a5eb3f3ff7be407ee7c452
Python
237
10
from pydantic import BaseModel from model.topic import TopicModel from container import Container from model.base_dao import BaseDao class TopicDto(BaseModel): id: str topicNum: int lastIndex: int evaluation: TopicModel
5cf08ebe9f62615c35e5eafb1ea2daec73240b8dfe39d132869bfa7d9ffbf206
Python
237
9
import matplotlib.pyplot as plt import numpy as np from typing import Union def equidistant(cmap: Union[str, object] = 'tab20c', k: int = 20) -> np.ndarray: ''' ''' return plt.get_cmap(cmap)(np.linspace(0, 1, k))[:,0:3]
ddad48486564c7aac049cf3be0df62ae98e6c0dd6f24e475864995ca594ca9aa
Python
237
6
from .analysis import (compute_proportions, fit_psychometric, PsychometricRegression, cumulative_gaussian, weibull)
ff173d5b09402546180b9a5a36ae55618835b44f65084c88838397037bfd972c
Python
237
8
# Copyright (C) CVAT.ai Corporation # # SPDX-License-Identifier: MIT from datetime import timedelta GITHUB_STAR_PROMPT_COOLDOWN = timedelta(days=30) GITHUB_STAR_PROMPT_POLICY = "cvat.apps.growth.policies.EnabledGitHubStarPromptPolicy"
60c4536971a6882316302b268bd60532bbc3f24bc1d3e3f7dfd201e2fd5074b9
Python
238
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('Hojin_Jang_ResNet50_Weak_blur') assert model.identifier == 'Hojin_Jang_ResNet50_Weak_blur'
d663460f90e13467f75772566bfbe96a80909533e97bdcccafe1de64569418b8
Python
238
8
import pytest import brainscore_vision @pytest.mark.travis_slow def test_has_identifier(): model = brainscore_vision.load_model('convnext_tiny_imagenet1k_HAND') assert model.identifier == 'convnext_tiny_imagenet1k_HAND'
570f4caba8e768b81ed032ddaec2c03f32c98f56214049c304293932f436e416
Python
239
11
"""test_random_imputation.py""" import impyute as impy from impyute.ops.testing import return_na_check SHAPE = (3, 3) def test_random_(test_data): data = test_data(SHAPE) imputed = impy.random(data) return_na_check(imputed)
5ea9fb7151c52328da22fe24faec0b0c3ad430355f383cfc18f3e98dd95b1958
Python
239
12
""" eTSC Data Package Data loading and processing modules """ from .dataset import MRIDataset, get_dataloader, load_nifti_ras, resize_volume __all__ = [ 'MRIDataset', 'get_dataloader', 'load_nifti_ras', 'resize_volume', ]
a2062c3970e7674668a0d433d9fb7c28cfc3315b313dad72924c4ee9cbe90707
Python
239
10
from os.path import join, dirname from subprocess import call from sys import exit, argv def main(): exe_path = join(dirname(__file__), "../bin/dynamont-NT") exit(call([exe_path] + argv[1:])) if __name__ == "__main__": main()