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5c5512590206fe695a4a92b0cf62ed99646beffbf4ad8afbc271911950aa90a3
License
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BSD 3-Clause License Copyright (c) 2019, Developmental Cognition and Neuroimaging Labs All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright n...
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License
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MIT License Copyright (c) 2024 The Chemprop Development Team (Regina Barzilay, Jackson Burns, Yunsie Chung, Anna Doner, Xiaorui Dong, David Graff, William Green, Kevin Greenman, Yanfei Guan, Esther Heid, Lior Hirschfeld, Tommi Jaakkola, Wengong Jin, Olivier Lafontant-Joseph, Shih-Cheng Li, Mengjie Liu, Joel Manu, ...
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License
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The Clear BSD License Copyright (c) 2023, SurgeCare All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted (subject to the limitations in the disclaimer below) provided that the following conditions are met: * Redistributions of source code must retain the...
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License
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Copyright (c) 2018, <COPYRIGHT HOLDER> All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the f...
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License
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MIT License Copyright (c) 2025 Francisco Joaquín Tassara Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, ...
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License
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MIT License Copyright (c) 2024 Francisco Joaquín Tassara Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, ...
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License
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Spl-IsoQuant: A universal toolkit for upstream processing of long RNA reads Copyright (c) 2022-2026 University of Helsinki Copyright (c) 2020-2022 Saint Petersburg State University Spl-IsoQuant is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License, Version 2, dat...
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License
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Copyright (c) 2026 10x Genomics Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to use, copy, modify, and/or merge copies of the Software, in both source code and object code format, solely for your internal use, subject...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Pream...
46633d9b124044cc1ff3d3891e45d3d866b9c6d29896d62d81072b6c5868816b
License
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Creative Commons CC0 1.0 Universal CREATIVE COMMONS CORPORATION IS NOT A LAW FIRM AND DOES NOT PROVIDE LEGAL SERVICES. DISTRIBUTION OF THIS DOCUMENT DOES NOT CREATE AN ATTORNEY-CLIENT RELATIONSHIP. CREATIVE COMMONS PROVIDES THIS INFORMATION ON AN "AS-IS" BASIS. CREATIVE COMMONS MAKES NO WARRANTIES REGARDING THE USE OF ...
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License
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Creative Commons Legal Code CC0 1.0 Universal CREATIVE COMMONS CORPORATION IS NOT A LAW FIRM AND DOES NOT PROVIDE LEGAL SERVICES. DISTRIBUTION OF THIS DOCUMENT DOES NOT CREATE AN ATTORNEY-CLIENT RELATIONSHIP. CREATIVE COMMONS PROVIDES THIS INFORMATION ON AN "AS-IS" BASIS. CREATIVE COMMONS MAKES NO WAR...
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License
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GNU LESSER GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. This version of the GNU L...
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License
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, and distribution as defined by Sections 1 through 9 of this document. "Licensor" shall mean the c...
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License
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Apache License ============== _Version 2.0, January 2004_ _&lt;<http://www.apache.org/licenses/>&gt;_ ### Terms and Conditions for use, reproduction, and distribution #### 1. Definitions “License” shall mean the terms and conditions for use, reproduction, and distribution as defined by Sections 1 through 9 of this ...
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License
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
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License
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Copyright 2026 Forbes Avila (Center for Alternatives to Animal Testing, Korea Institute of Toxicology / Human and Environmental Toxicology, University of Science and Technology, Republic of Korea) Jin Kim (Department of Physiology, College of Medicine, Soonchunhyang University / Institute for Molecu...
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License
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
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License
11,358
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
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License
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License Section of Biomedical Image Analysis Department of Radiology University of Pennsylvania 3700 Hamilton Walk, Floor 7 Philadelphia, PA 19104 Web: http://www.med.upenn.edu/sbia/software.html Email: software at cbica.upenn.edu SBIA Contribution and Software License Agreement ("Agreement") =======...
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License
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
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License
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GNU General Public License ========================== _Version 2, June 1991_ _Copyright © 1989, 1991 Free Software Foundation, Inc.,_ _51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA_ Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. ...
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License
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GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is no...
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License
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Attribution 4.0 International ======================================================================= Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or other rela...
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License
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Attribution 4.0 International ======================================================================= Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or other relat...
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License
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Attribution 4.0 International ======================================================================= Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or other relat...
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License
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Attribution-NonCommercial 4.0 International ======================================================================= Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client ...
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License
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Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or other relationship. Creative Commons ma...
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License
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Attribution-NonCommercial-ShareAlike 4.0 International ======================================================================= Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a law...
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License
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Attribution-NonCommercial-ShareAlike 4.0 International ======================================================================= Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a law...
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License
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We provide our code and data under a CC BY-NC-SA 4.0 license, "As is" and without any guarantee to the scientific community for academic and research purposes, not commercial use. To view a copy of this license, visit https://creativecommons.org/licenses/by-nc-sa/4.0/ ==========================================...
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License
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GNU AFFERO GENERAL PUBLIC LICENSE Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. ...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Pream...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamb...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamb...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamb...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Pream...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Pream...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. ...
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MATLAB
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1
1 2
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MATLAB
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MATLAB
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Nan 100 .
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MATLAB
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1000 2000 3000
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MATLAB
30
2
function c=char(t) c=t.names;
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MATLAB
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2
function X=double(t) X=t.matrix;
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MATLAB
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2
function s=isempty(t) s=isempty(t.matrix);
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MATLAB
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2
function t=subsref(m.s) t=getfield(m,s.subs);
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MATLAB
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function Z = AS_PtoZ(p) Z = norminv(1-p); end
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MATLAB
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classdef Test < handle %TEST Base class of tests end
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MATLAB
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4
function z = abs_ge(x, y) z = abs(x) >= abs(y); end
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MATLAB
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5
classdef Direction enumeration X, Y, Z end end
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MATLAB
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3
function [nm,nv]=char(m); nm=char(m.mean); nv=char(m.variance);
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MATLAB
65
5
classdef FigSize enumeration SMALL, LARGE end end
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MATLAB
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3
function [x,v]=double(m); x=double(m.mean); v=double(m.variance);
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MATLAB
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5
classdef MeshType enumeration STD, INF, VINF end end
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MATLAB
72
5
classdef PlotValue enumeration PVALUE, STATISTIC end end
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MATLAB
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5
classdef FigMargins enumeration NONE, WHITESPACE end end
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MATLAB
73
5
classdef MatrixType enumeration MATRIX, TRIMATRIX end end
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MATLAB
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2
function s=isempty(model) s=isempty(model.mean) && isempty(model.variance);
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MATLAB
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7
mex abs.c mex max.c mex min.c mex minus.c mex plus.c mex rdivide.c mex times.c
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MATLAB
80
4
function [q, P] = kalman_predict(q, P, A, V_q ) q = A*q; P = A*P*A' + V_q; end
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MATLAB
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classdef PlotType enumeration FIGURE, CHORD, CHORD_EDGE end end
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MATLAB
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5
classdef CovariatesEnabled enumeration NONE, ONLY_FC, ALL end end
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MATLAB
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4
function BCCT_CON_SurfROI_GUI uiwait(msgbox('comming soon')); BCCT_SCN_GUI; end
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MATLAB
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4
function BCCT_CaSCN_SurfROI_GUI uiwait(msgbox('comming soon')); BCCT_SCN_GUI; end
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MATLAB
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6
function s=mpower(m,p) if p>=2 s=mtimes(m,mpower(m,p-1)); else s=m; end
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MATLAB
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4
function returned = permuteVector(vec) returned = vec(randperm(numel(vec))); end
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MATLAB
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3
classdef TestResult < nla.DeepCopyable %TESTRESULT Base class of test results end
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MATLAB
87
5
function P=power_signal(x) % Computes power of signal L=length(x); P=(norm(x)^2)/L; end
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MATLAB
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4
function BCCT_MOD_SurfROI_GUI uiwait(msgbox('comming soon')); BCCT_Modulate_GUI; end
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MATLAB
89
5
classdef ProbPlotMethod enumeration DEFAULT, LOG, NEGATIVE_LOG_10 end end
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MATLAB
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5
classdef SigType enumeration INCREASING, DECREASING, ABS_INCREASING end end
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MATLAB
92
5
function s=size(m,dim) s=[size(m.mean) size(m.variance)]; if nargin==2 s=s(dim); end
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MATLAB
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function s=size(t,dim) if nargin==1 s=size(t.matrix); else s=size(t.matrix,dim); end
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MATLAB
98
7
function B = binarize(sFC,threshold) B = sFC; B(B>=threshold) = 1; B(B<threshold) = 0; end
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MATLAB
101
5
classdef ViewPos enumeration LAT, MED, POST, DORSAL, LEFT, RIGHT, FRONT, BACK end end
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MATLAB
102
5
classdef BrainColorMode enumeration DEFAULT_NETS, COLOR_NETS, COLOR_ROIS, NONE end end
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MATLAB
102
3
function m=I %Identity matrix for the variance in a model formula, same as I=random(1). m=random(1);
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MATLAB
107
7
classdef DialogOption properties (Constant) YES = 'Yes' CANCEL = 'Cancel' end end
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MATLAB
109
3
function repo_url = nst_get_repository_url() repo_url = 'https://neuroimage.usc.edu/resources/nst_data'; end
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MATLAB
110
7
function I = mipp_signalEveningFilter(I) I = double(I); nrm = prctile(I(:), 99); I = sqrt(I/nrm) + I/nrm/2;
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MATLAB
111
7
function par = mipp_parameterFilter(pin) par = pin; rmind = par == 0 | par<=-6 | par >= 6; par(rmind) = nan;
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MATLAB
112
5
classdef Base methods (Abstract) permuted_input_struct = permute(obj, orig_input_struct) end end
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MATLAB
116
4
function [eta] = compute_ai(h, noise_cov, data_cov) eta = (h' * inv(noise_cov)* h )/ (h' * inv(data_cov)* h ); end
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MATLAB
116
8
function s=mpower(t,p) t=term(t,inputname(1)); if p>=2 s=mtimes(t,mpower(t,p-1)); else s=t; end
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MATLAB
117
5
classdef NetworkLevelMethod enumeration NO_PERMUTATIONS, FULL_CONNECTOME, WITHIN_NETWORK_PAIR end end
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MATLAB
118
4
function returned = triNum(n) %TRINUM Calculate the nth triangular number returned = (n .* (n + 1)) ./ 2; end
527251e09203f4904025c2cf4719c34017b99d56065bac28221835dbfdf98961
MATLAB
119
5
classdef EdgeChordPlotMethod enumeration PROB, COEFF, COEFF_SPLIT, COEFF_BASE, COEFF_BASE_SPLIT end end
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MATLAB
122
8
function [v] = squash(m) %UNTITLED Summary of this function goes here % Detailed explanation goes here v = m(:); end
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MATLAB
124
5
function xps = resQ_xps_example() % function xps = resQ_xps_example() data = load('resQ_xps_example.mat'); xps = data.xps;
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MATLAB
126
6
function show_info(data) if isequal(data.info,'NaN') msgbox('there is no information') else msgbox(data.info) end
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MATLAB
127
5
function save_work(data_to_save) global data listbox listbox_value = listbox.Value; data(listbox_value) = data_to_save; end
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MATLAB
133
8
classdef DimensionType < double properties (Constant) NROIS = -1 NROIPAIRS = -2 NPERMS = -3 end end
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MATLAB
133
3
function local_nst_dir = nst_get_local_user_dir() local_nst_dir = fullfile(bst_get('BrainstormUserDir'), 'defaults', 'nirstorm'); end
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MATLAB
134
4
function returned = triNumInv(x) %TRINUM Find n corresponding to the given triangular number returned = floor(sqrt(x*2)); end
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MATLAB
136
6
function opt = mipp_resQ_opt_nocov(opt) opt.resQ.lb([8 9]) = 0; opt.resQ.ub([8 9]) = 0; opt.resQ.lg([8 9]) = 0; opt.resQ.ug([8 9]) = 0;
90380f5afc53696be01d111ed21121c1003a3bdce95a00f41ae027d7bae2192e
MATLAB
143
6
function [f] = calc_obj(R, S_R, T) logdetR = 2*sum(log(diag(chol(R)))); %f = T*logdetR + trace(R*inv(S_R)); f = T*logdetR + trace(R\S_R); end
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MATLAB
146
4
function data_fn = utest_request_data(data_bfn_parts) local_fns = nst_request_files({['unittest' data_bfn_parts]}, 0); data_fn = local_fns{1}; end
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MATLAB
148
6
function [q, P, Kf] = kalman_update(q, P, Y, tmp_, XI) Kf = P*tmp_'/(tmp_*P*tmp_'+ XI ); q = q + Kf*(Y-tmp_*q); P = P - Kf*tmp_*P; end
bdc5b50f11ea4cb664ae8ea950e6ff477f6d75b0d85d23aec71840e6d40245af
MATLAB
148
5
function c3 = mixColors(c1, c2, fac) %MIXCOLORS Mix two colors at the given factor (between 0 and 1) c3 = (c1 .* fac) + (c2 .* (1 - fac)); end
eabdd12abdb5838c70e2c0823460520a1482d1d78d82ef96770386043f39c651
MATLAB
149
6
function hash = hash(fpath) %HASHFILE Generate hash of file contents f_str = fileread(fpath); hash = mlreportgen.utils.hash(f_str); end