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610a07a15c8ba36b52df02f5d15083c0d3ed2bf859216076a476b9a15d8cdffb
License
3,613
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ Copyright 2026 Hongyu Sun Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 U...
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License
7,652
165
GNU LESSER GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. This version of the GNU ...
88d7f7c4a0c4b5a5dd01f7032eb6c6b0c9f52159e238534048cd52fdda7ad8c6
License
7,707
168
Copyright (c) 2015, Robbert Harms All rights reserved. GNU LESSER GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but c...
f1f9247fa8807679e8efecdf8e930421bc2e46ccf761c97c32653e954972f3c3
License
8,946
191
The Artistic License 2.0 Copyright (c) 2000-2006, The Perl Foundation. Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble This license establishes the terms under which a given free software Package may be copied, modified, distributed, an...
85a859e04b7706429fef3e1ca4db916a23197edb43456c937018668eb5174dd3
License
9,240
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, and distribution as defined by Sections 1 through 9 of this document. "Licensor" shall mean the c...
015f0b63f315cac2f89d94e4fafa74fcb7f7e7ccddf67c2eb203f8d92811f273
License
10,760
194
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
283ea6cc2997a1a70da0049e09adf9317bb60ca1b51279b65196b83a69e1996b
License
11,323
201
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, and distribution as defined b...
f860fed35fa34e7209179ac167afafa99b161d77752ce31781b02f0d6a712c58
License
11,338
201
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
750a76418c3d7c365dbc220df975a09c0287055eb1bf99faaedf4aca695ddb8f
License
11,341
201
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
22a7ae47da760f8fbf95318f1d57302a7044429e260ae0963fa07b66a997c3f4
License
11,345
202
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
c5accbbd8546e94c34aed24afe689a617627d18eed5a6c48277e48db57c23851
License
11,356
201
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
7da9f2ddeda836a891f537104530230a7b2318f61ea4c57b05e3dd46a9ae27fd
License
11,427
201
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
97276e5574e41d01ee6c5ec4ba047beee3ed7db6864ca4802c54488da6a04cc4
License
11,453
202
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
f7ffbe9a6b66cf1126fd1e20ca89f7de77b16e41021bedf1889d0119946b540d
License
12,521
227
Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
c6c20b11fc8d35f783770faf0d0926089d42ea09613c7e262b9e3684752f5db0
License
13,597
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## [CC BY-NC 4.0 License](https://creativecommons.org/licenses/by-nc/4.0/?ref=chooser-v1) <b> Copyright © 2026 by The Board of Trustees of the Leland Stanford Junior University Contact the Stanford Office of Technology Licensing (otl.stanford.edu) for commercial license inquiries </b> Attribution-NonCommercial 4.0...
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License
13,829
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EUROPEAN UNION PUBLIC LICENCE v. 1.2 EUPL © the European Union 2007, 2016 This European Union Public Licence (the ‘EUPL’) applies to the Work (as defined below) which is provided under the terms of this Licence. Any use of the Work, other than as authorised under this Licenc...
514f452edac28edb27b7390088de3031c608e105091afa469a5c75abd075e33f
License
13,869
91
Copyright (c) 2021 LEAP Lab, Indian Institute of Science, Bangalore, India Creative Commons Attribution 4.0 International Public License By exercising the Licensed Rights (defined below), You accept and agree to be bound by the terms and conditions of this Creative Commons Attribution 4.0 International Public License ...
86fcfd4be39f2a49527074a3808b2e4cb78a4e2104d2a1f5951bdded2eb4729d
License
14,378
322
Oxford Nanopore Technologies PLC. Public License Version 1.0 ============================================================= 1. Definitions -------------- 1.1. "Contributor" means each individual or legal entity that creates, contributes to the creation of, or owns Covered Software. 1.2. "Contributor Version" ...
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License
14,527
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Creative Commons Attribution 4.0 International Public License By exercising the Licensed Rights (defined below), You accept and agree to be bound by the terms and conditions of this Creative Commons Attribution 4.0 International Public License ("Public License"). To the extent this Public License may be interpreted as...
639b04c1d456760ff86f57db9f1f8049eb2b1c62ade03c8414664811f0afd00a
License
15,746
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This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/. Mozilla Public License Version 2.0 ================================== ### 1. Definitions **1.1. “Contributor”** means e...
c6887845f9e0c6f85880ebc531dbb39b1f2e8b957451289001900f50ac80a732
License
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nextpresso: next generation sequencing expression analysis pipeline. Copyright (C) since 2015 Osvaldo Graña. nextpresso by Osvaldo Graña is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License (http://creativecommons.org/licenses/by-nc-nd/3.0/). Contact: ograna@cnio.es License ...
db296f2f7f35bca3a174efb0eb392b3b17bd94b341851429a3dff411b1c2fc73
License
18,046
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GNU GENERAL PUBLIC LICENSE Version 2, June 1991 Copyright (C) 1989, 1991 Free Software Foundation, Inc., <http://fsf.org/> 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but...
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License
18,760
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Creative Commons Legal Code CC BY Attribution 4.0 International ======================================================================= Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or...
b0bd28e08a7020378a12e57af17e9b8999fc397eb9c8e6026325b80000e7c374
License
19,951
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Copyright (c) 2025 Luke Vano Creative Commons Attribution-NonCommercial 4.0 International Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or other relationship. Cre...
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License
20,132
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Attribution-ShareAlike 4.0 International ======================================================================= Creative Commons Corporation ("Creative Commons") is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or ...
ec7befde9377dfda78705aa695f1351bcc00c29498b97e44d7e92c562c8ab44c
License
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CeCILL FREE SOFTWARE LICENSE AGREEMENT Copyright (c) Institut Curie Version 2.1 dated 2013-06-21 Notice This Agreement is a Free Software license agreement that is the result of discussions between its authors in order to ensure compliance with the two main principles guiding its drafting: * firstly, complian...
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License
25,780
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
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License
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GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999 Copyright (C) 1991, 1999 Free Software Foundation, Inc. 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA Everyone is permitted to copy and distribute verbatim copies of this license document, but chang...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamb...
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License
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GNU AFFERO GENERAL PUBLIC LICENSE Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble Th...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright © 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The GNU General Public License is a free, copyleft license for software...
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License
34,819
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright © 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The GNU General Public License is a free, copyleft license for ...
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License
34,911
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright © 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The GNU General Public License is a free, copyleft license for softw...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (c) 2023 Tencent Inc. This copyright and license covers both the source code and model weights referenced for download in the README file. Preamble The GNU General Public License is a...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamble The GNU Gener...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Pream...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Pream...
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License
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. ...
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License
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Lead-DBS (c) 2014 – (the "Software") GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. ...
cf5f2bed44fe22a20c8b2d641644e3ea1625179e842d166847cf0a62fe6073f7
MATLAB
12
1
!rm */*.mex*
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MATLAB
21
1
tb.RefreshToolbar();
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MATLAB
21
1
mcc -m roi2roi_correl
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MATLAB
22
1
addpath(genpath(pwd));
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MATLAB
25
1
%A dummy file for Yalmip.
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MATLAB
32
3
function a = double(a); return;
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MATLAB
35
2
function CBIG_wo_MIT_license() end
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MATLAB
36
2
function rng_default rng default;
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MATLAB
36
2
function rng_shuffle rng shuffle;
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MATLAB
37
3
function s = msize(a); asdfdsa;
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MATLAB
37
2
function res = error_bc res = false;
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MATLAB
41
1
need to write this for the jump task....
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MATLAB
43
3
function encoderClose(encoderHandle) end
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MATLAB
44
3
function stopButtonOnTop figure(539375677);
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MATLAB
48
3
function res = isstruct(this); res = 1;
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MATLAB
50
3
mex kdtree.cc mex kdtreeidx.cc mex kdrangequery.cc
b950c4e71be2f2d07d4bf9910e80a6e29885c80bc2a9526b53b63fdea91d335b
MATLAB
50
4
function rad=ea_deg2rad(deg) rad = pi*deg/180.0;
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MATLAB
55
3
function res = double(a); res = double(a.data.data.x);
91b45de01f34a66769b8e75e496c91aa139004ea92cbb3362d85d455646db5fc
MATLAB
57
5
function z=vecr(fit) z = fit.fit_points.kappa; return;
73e6d1cf9c12b3b86cd0ad16875c1425abbfaaa5421320b30eef934d55b1c185
MATLAB
58
3
function v=shuffle(v) v=v(randperm(length(v))); end
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MATLAB
60
6
function x = gather_try(x) try x = gather(x); catch end
a87b583ce8f77537450ba4e529b7c7e53cef16b2321dc7d39c7750b7b9fa0c79
MATLAB
61
3
errordlg('ctfroot is: '); errordlg(ctfroot); errordlg('end');
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MATLAB
63
2
function s = sparseness(a) s = sum(sum(a~=0)) / prod(size(a));
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MATLAB
69
3
function res = fieldnames(this); res = fieldnames(this(1).EEG);
606d229299fddc7c6cba53cb34bc7c0a6c60d085345641f32b8271e7ca6ee763
MATLAB
69
3
function y = rms(u) y = sqrt(sum(u.*conj(u))/max(size(u))); end
3dc00c32ce5d7b3f7ba2e62bff6147c50d39142c119f93666727cefe689ded77
MATLAB
71
5
function res = transpose(obj); res = ctranspose(obj, 0);
91df87167300efcb2b31110b9fc03098fe9329c24f352a86835445f309e64c14
MATLAB
77
5
function dev = glmnetDev(object) dev = (1-object.dev) * object.nulldev; end
5d52c5cae7ed8c6bc5453d2bd81928177e73543ee74fac31f6ee84fa6b7b3b3a
MATLAB
78
8
function showdis(text,verbosity) if verbosity>0 disp(text); end end
9339a6a2757d16b1264ca3107fd63176c1a9ab2d2805f040c1fc33ce8b0e90bf
MATLAB
78
3
function is = is_octave () is = exist ('OCTAVE_VERSION', 'builtin') == 5; end
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MATLAB
80
2
function b = stopButtonPressed b = isempty(findobj('Tag','stopbuttonpresent'));
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MATLAB
81
4
function lmap = linearmap(map) [n,m] = size(map); lmap = reshape(map, [1 n*m]);
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MATLAB
81
3
function ea_normsettings_easyreg(varargin) disp('EasyReg: Nothing to set up.')
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MATLAB
81
10
%% astar_search %% bfs %% breadth_first_search %% dfs %% depth_first_search
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MATLAB
83
3
function obj2 = fft( obj1, varargin ) obj2 = unitaryopp(@fft, obj1, varargin{:});
33dc4d54fca4c0165dc6f9a3a6ec5c81f2e503c236fd2e8ed804e2191bb9813c
MATLAB
84
2
function sfile = ea_getrois(sfile) sfile = strsplit(strip(fileread(sfile)), '\n')';
a70b56d25433bf42d883931ebc4a9763f567fad101b00bff48cd631c7308cb1b
MATLAB
85
4
function this = rmfield(this, vals); this.EEG = rmfield(this.EEG, vals);
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MATLAB
86
3
function res = isfield(this, vals); res = isfield(struct(this(1).EEG), vals);
0b92e7b4ec287195be6cff7f591051a8efe3da882a6a45143e33fd82029a5328
MATLAB
88
8
function res = ismatlab; v = version; if v(1) > '4' res = 1; else res = 0; end;
753ba2095d7cca82c8f56437c0d7f70539e6f31fb8f0c3c1b52b656073de5985
MATLAB
88
6
function [ fisher_z ] = subfun_fisher_z( r ) fisher_z = log( (1+r) ./ (1-r) )/2; end
64e527551c69651ab83e822656f13030365fc9167c5e2305c289392653bc095e
MATLAB
90
6
function assert(condition,varargin) if condition, return; else error(varargin{:}); end
2f09437d20f854b119a77339a2d1d861c999ce645fdf925d3433344cb963dcb1
MATLAB
91
6
[b,i] = sort([data.type],'ascend'); files = dir('*_stack.mat'); files = files(i);
480f5b6e66c5d4ef03cbff220527cfdd83074967fbab557748133be0e5d345fe
MATLAB
94
6
function s = size3(A) s = size(A); if length(s)<3 s = [s ones(1,3-length(s))]; end
c10163acbf526ef08b923ed8688729ebd981459157ae382577de7d675cebdc60
MATLAB
96
7
function r = ternary(cond,a,b) if cond r=a; else r=b; end end
118fa0bc54dbbac6f71691432e3c49f064c8f1a8de1f7fd97a0ec82ac9c89e2b
MATLAB
97
6
function [ r ] = subfun_fisher_z_inverse( z ) r = (exp(2 .* z) - 1) ./ (exp(2 .* z) + 1); end
81b4d1be8bfe3dc75f44d39ab1db1568c5cef57cd2cd4f89246a952ad3e5b7bd
MATLAB
100
5
pathroot = pwd; save -mat util/mypath.mat pathroot addpath(genpath( pathroot ), '-begin'); savepath
1ef7f17f00d467d138fac64e1eb7ea99a7b679e241005082a1e45df8812d2023
MATLAB
101
6
load ../graphs/dfs_example.mat [d dt ft pred] = dfs(A,2); [ignore order] = sort(dt); labels(order)
a4862a945f3248c39515ef3bd52cf2736e046ee5249319e559a23517cf49421f
MATLAB
101
6
load ../graphs/max_flow_example.mat max_flow(A,1,8) [flow cut R F] = max_flow(A,1,8); full(R)
4ac1154e8f335b50cc8e0a8a941f6af4b1fd709ddf47ace2e48fa71a741e276f
MATLAB
103
6
function z=hatmatrix(varargin) fit = locfit(varargin{:},'module','hatm'); z = lfknots(fit)'; return;
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MATLAB
104
8
function ix = indexmatrix( dims ) ix = zeros(dims); p = prod(dims); for i=1:p ix(i) = i; end
a2eff2b5ba78ae0787ae2c7dc0dd61a106849b49cecf97d11b69eb6acaeb278a
MATLAB
107
1
% Written by [xxx] and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
ad88c07c83b58d5f85ee28d34c4d63adf12f89b034f10d84dfc23193c0097e08
MATLAB
109
3
function myPLS_plot_inputs(input,pls_opts,save_opts) % Function to plot a few overview figures on input data
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MATLAB
110
3
function X=ea_addone(X) % simple function to add intercept term (e.g. for regression) X=[ones(size(X,1),1),X];
7a441641f84e523c264343159be07842026a146951c0ad64391aaefbbabbb698
MATLAB
110
5
function [ dims ] = getDims( orig_size , deltas ) [tmp,dims] = formMapPyramid( ones(orig_size) , deltas );
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MATLAB
111
5
function conname=ea_conn2connid(conname) if ~isempty(conname) conname = regexprep(conname, '\W', ''); end
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MATLAB
111
3
function y = gaussian(amplitude, mean, sigma, x) y = amplitude * exp(-(x - mean).^2 / (2 * sigma^2)); end
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MATLAB
111
4
function root = ea_getearoot % TODO: check compiled version root = [fileparts(mfilename('fullpath')) filesep];
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MATLAB
111
4
function [data] = bz_shuffleCellID(data) % randomly permutes cell order data = data(randperm(size(data,1)),:);
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MATLAB
111
8
function threshs = getIntelligentThresholds( vals ); threshs = unique(vals) - 1e-16;
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MATLAB
111
3
function hm = show_imgnmap( img , out ) hm = heatmap_overlay( img , out.master_map_resized ); imshow( hm );
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MATLAB
113
6
load ../graphs/bfs_example.mat [d dt pred] = bfs(A,2); [ignore order] = sort(dt); labels(order) treeplot(pred);
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MATLAB
118
4
function displayEndOfDemoMessage(filename) % Dummy function - do nothing. % % Copyright 2009-2013 The MathWorks, Inc.