sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
71df2fd23109aca5128166dce1bd5d1d4dc3807b987acdae2cd6cd71d6321911 | MATLAB | 1,078 | 47 | function [d dt pred] = bfs_in_mbgl(A,u)
% BFS_IN_MBGL Reimplement the BFS function with MatlabBGL visitors.
%
% [d dt pred] = bfs_in_mbgl(A,u)
%
% See BFS
%
% Example:
% load ../graphs/bfs_example.mat
% d = bfs_in_mbgl(A,1)
ip_d = ipdouble(-ones(num_vertices(A),1));
ip_dt = ipdouble(-ones(num_vert... |
a284c2ad87ab9aa63c9d5bb1da5b1882f2c06dc5faefcf5508742c8d302feb18 | MATLAB | 1,078 | 28 | function names = structunpack(s, force)
%STRUCTUNPACK Copies the fields of a structure into the workspace.
% STRUCTUNPACK(S) creates a variable in the workspace with name
% 'fieldname' for each 'fieldname' that is a field of S, and copies the
% value of S.('fieldname') into the variable 'fieldname'.
%
% ST... |
578a4b296e4ad3c8418107e24cb5552bd063d9d703a0236f7679736b0029e272 | MATLAB | 1,079 | 30 | ccc;
%% Path
% SINGLEPATHs = dir("..\MAT Data\granger result minus base\**\Prediction\**\average\**\*.mat");
% SINGLEPATHs = dir("..\MAT Data\granger result minus base\**\PE\**\average\**\*.mat");
% SINGLEPATHs = dir("..\MAT Data\granger result minus base\**\PE\**\average\**\*Passive\*.mat");
% SINGLEPATHs = dir("..\... |
a9a658cc15a6fd1956f98c86737e6b622db728b9c598e38c423322b39bb83314 | MATLAB | 1,079 | 33 | function ea_rBmap(varargin)
% creates a correlation nifti file given a set of images and a
% regressor ("R map" in Horn 2017 AoN)
% ea_Rmap(fis,regressor,outputname,mask,sk) % sk can be 'k','s','sk'
% for smoothing and normalization options. Mask only necessary if
% choosing 'k' option.
... |
f08164345d71dabc46a8ffeb199ea450baadc341d3b3b0daa3c6e8465fdad63c | MATLAB | 1,079 | 41 | % Exercise 5.33: Parametrized l1-norm approximation
% Boyd & Vandenberghe "Convex Optimization"
% Joëlle Skaf - 08/29/05
% (a figure is generated)
%
% Let p_star(epsilon) be the optimal value of the following problem:
% minimize ||Ax + b + epsilon*d||_1
% Plots p_star(epsilon) versus epsilon and demons... |
2463f33d5424617899dda7e52a0231f2801b941e7b753473e1a3f20dd54728bc | MATLAB | 1,081 | 29 | function M_recover = CBIG_MMLDA_matrix_completion_GLM(M, M_train)
% M_recover = CBIG_MMLDA_matrix_completion_GLM(M, M_train)
%
% Use GLM to do matrix completion for missing entries by using training matrix.
%
% Input:
% - M : N x B matrix with missing entries (NaN). N is the # of subjects. B is # of featur... |
506b8ff848b35ffb4d847ca2ef3823babd9f87fd296aee34ee82785c21649a4c | MATLAB | 1,081 | 48 | function [d,dt]=formatts(d)
%
% Usage: [d,dt]=formatts(d)
%
% Helper function for CWT,XWT,WTC
%
% Brings a timeseries into a shape so that it has two columns: [time, value].
%
%
% (C) Aslak Grinsted 2002-2004
%
% -------------------------------------------------------------------------
% Copyright (C)... |
187c3b0b09790f8221b0bb0fca330113e89c5fe9ed166c1953149a367adc3dec | MATLAB | 1,082 | 36 | % Exercise 4.57: Capacity of a communication channel
% Boyd & Vandenberghe "Convex Optimization"
% Joëlle Skaf - 04/24/08
%
% We consider a discrete memoryless communication channel, with input
% X(t) \in {1,...,n}, and output Y(t) \in {1,...,m}, for t = 1,2,...
% The relation between the input and output is give... |
66833d115b520bcd4b79fb307268804e4631c5c0ab28b66d24b3a389b0da4c3f | MATLAB | 1,082 | 40 | %islscalar - Test if parameter is a (pseudo) logical scalar.
%
% USAGE
%
% test = islscalar(x)
%
% x parameter to test
%
% NOTE
%
% To be considered logical, the scalar should be equal to 0 or 1, but it does
% not need to actually be of class 'logical' (class(x) could be e.g. 'double').
%
% ... |
ce0f1f17fa08cc5187da372da5d886f64203d120dd1539806123fd06143cf932 | MATLAB | 1,083 | 34 | function out = freq2coord_1D(T, w, padN)
%% freq2coord_1D.m
%
% Calculates the continuous 1D inverse Fourier transform of T.
%
% Inputs: T : array of 1D transfer function or signal in frequency space
% size(T) = [1, length(w)]
% w : vector of temporal frequencies
% padN... |
df148dbe4737e3757daf57516190be6b3df6962750bdf2e9e05587fc8ff3e44b | MATLAB | 1,083 | 37 | function l = length(tree,r)
% XMLTREE/LENGTH Length Method
% FORMAT l = length(tree,r)
%
% tree - XMLTree object
% r - 'real' if present, returns the real number of nodes in the
% tree (deleted nodes aren't populated)
% l - length of the XML tree (number of nodes)
%_______________________________... |
fae30617bad948e9efe57688627f549062f5365d9e612ae39ce6e717d00706e2 | MATLAB | 1,083 | 36 | function [connName, subset] = ea_connLabel2connName(connLabel)
% Return connectome name [and subset] based on connLabel
connName = [];
subset = [];
connBaseFolder = ea_getconnectomebase;
datasetInfo = ea_regexpdir(connBaseFolder, '^dataset_info\.json$');
[~, connNames] = fileparts(fileparts(datasetInfo));
for c=1:le... |
4e34be8ed51e9c6681f3b65df0eba62b442d41e05566471bc7b5cd46d59ef439 | MATLAB | 1,084 | 30 | function k = xml_findstr(s,p,i,n)
%XML_FINDSTR Find one string within another
% K = XML_FINDSTR(TEXT,PATTERN) returns the starting indices of any
% occurrences of the string PATTERN in the string TEXT.
%
% K = XML_FINDSTR(TEXT,PATTERN,INDICE) returns the starting indices
% equal or greater than INDICE of occu... |
776d20e787e4c9e894f063dbbd6f52fa6b5050aa9c3be50da374ccdd9473faaa | MATLAB | 1,084 | 30 | function z = lambda_sum_largest( Y, k )
% LAMBDA_SUM_LARGEST Sum of the k largest eigenvalues of a symmetric matrix.
%
% For square matrix X, LAMBDA_SUM_LARGEST(X,K) is SUM_LARGEST(EIG(X),k)
% if X is Hermitian or symmetric and real; and +Inf otherwise.
%
% An error results if X is not a square matrix.
%... |
c5242f81cb241ea399dcd4cbcd17594b1f67a458c3fc6a3e8b03018367296ec5 | MATLAB | 1,085 | 33 | function altered = ambiguate_dims(dims)
%emulate matlab's singular-dimension-dropping behavior
altered = dims;
if length(dims) == 1 && dims(1) == 0
altered(2) = 0; %emulate [] behavior
end
lastnonsingular = find(dims ~= 1, 1, 'last');
%only applies to dimensions 3 and up
if isempty(l... |
764cbcfa31160d2bec657db4f416fedc5679e02bbfb01b713752c3dffe6c0034 | MATLAB | 1,086 | 38 | function [] = LogScale_ss( whichaxis,logbase)
%LogScale(whichaxis,logbase) renames the tick labels on your axes for a
%logarithmically scaled variable.
%
%INPUT
% whichaxis which axis did you log scale (can be 'x' 'y' or 'xy')
% logbase base of the logarithm you used for your points (ex 10)
%
%EXAMPLE
% plo... |
312e7103112f0cc30f9e3328ee013459fd3ea882e4af6373afff806ab10386ea | MATLAB | 1,087 | 39 | function [n,names] = plx_event_names(filename)
% plx_event_names(filename): gets the names of event channels in a .plx file
%
% [n, names] = plx_event_names(filename)
%
% INPUT:
% filename - if empty string, will use File Open dialog
%
% OUTPUT:
% names - array of event name strings
% n - number of chan... |
bf4cfd82b442340c765e063601598f98e21890d00baf7f4368324da335945e5a | MATLAB | 1,087 | 42 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%% CPC METACOGNITION TUTORIAL 2019: CALCULATE TYPE2ROC %%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Function to calculate the area under the type2 ROC curve
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%... |
c2ef77857b282984a3d690547b6078ff11cc72725f8f29d9abc595dae4e4299c | MATLAB | 1,087 | 49 | function [rho,pval] = circ_corrcl(alpha, x)
%
% [rho pval ts] = circ_corrcl(alpha, x)
% Correlation coefficient between one circular and one linear random
% variable.
%
% Input:
% alpha sample of angles in radians
% x sample of linear random variable
%
% Output:
% rho correlation coeffic... |
daac9c1da7c8c5a3275d231b8bafa26a490979e7314d5bbe684f6a3db9d58d1f | MATLAB | 1,087 | 45 |
curr_path = pwd;
addpath(pwd);
if(exist('AnalysisTools', 'dir'))
addpath(fullfile(curr_path, 'AnalysisTools'));
end
if(exist('AtlasSharpnessAndLabelMatch', 'dir'))
addpath(fullfile(curr_path, 'AtlasSharpnessAndLabelMatch'));
end
if(exist('BasicTools', 'dir'))
addpath(fullfile(curr_path, 'BasicTools'));
end... |
232786fd198375cb07790dd2415db4934c01a7d823eaa10be3a88b958a0eda59 | MATLAB | 1,088 | 41 | %% Demo of the KDTREE and KDTREEIDX function.
%%
%% Guy Shechter
%% guy at jhu dot edu
%% June 2004
%% Generate a set of 10000 reference datapoints in R^3
ReferencePts = rand(100000,3);
%%% Build the k-d Tree once from the reference datapoints.
[tmp, tmp, TreeRoot] = kdtree( ReferencePts, []);
for Iteration =... |
6992f6d9bf493f210744fdcdb365d43fc8ae665332f8f432c21f9659cf68db77 | MATLAB | 1,088 | 54 | getUtrackPackPaths
smPropPerTimeInterval
actinPropPerTimeInterval
cleanActinPropPerTimeInt
smactinPropPerTimeInt
smactinMat
smactinClean
retainTassmInliers
smactinAggMov
runSmactinAggMovExplain
multiCompareIndCellsMVRG
scan4smSpeckleThreshold
plotBiphasicLines
getFsmTrackNum
getUtrackNum
collectSmPropByT... |
f25d5b565136e05f7a9b87c347c3706fb53545a8aaf6f1f5428415e32c011d9c | MATLAB | 1,088 | 31 | function variables( varargin )
%VARIABLES Declares one or more CVX variables.
% VARIABLES x1 x2 x3 ..., where x1, x2, x3, etc. are valid
% variable names, declares multiple cvx variables. It is
% exactly equivalent to issuing a separate VARIABLE command
% for each x1, x2, x3, ...
%
% VARIABLES allows... |
66ca6cd9957e3f145c9f1dd4e0b8ce343665134c34229acbd5cecfacb9de7997 | MATLAB | 1,089 | 49 | function badout = ReadBadChannels_SleepScore(basepath)
% Reads bad_channels.txt files in basepaths. Format must be a vertical set
% of text lines, all numbers after the last blank line will be assumed to
% be bad channels. Output is a vector of numbers of bad channels.
%
% Brendon Watson 2016
if ~exist('basepath','v... |
8a1ae2fe8cb11340df710ee400176c1b61d363cbb12e4be365dfab03f1de68a6 | MATLAB | 1,089 | 43 | function elist=surfpart(f,loopedge)
%
% elist=surfpart(f,loopedge)
%
% partition a triangular surface using a closed loop defined by existing edges
%
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2012/02/09
%
% input:
% f: input, surface face element list, dimension (be,3)
% loopedge: a 2-column array,... |
c551aeecc54e0563e97d47e642a9fd9e704659deae342f8538df1df5e1d10f49 | MATLAB | 1,089 | 44 | function b = getCubicBSplineBasis(x,nknots,isCirc)
% Calculates set of splines with n evenly spaces knots to describe
% fluctuations in x
% Author: Abed Ghanbari
% input
% x = timestamps of neuron normalized by range
% nknots = number of knots required to evens sample time range
% isCirc = wrap time around ?
%output... |
2dede9c72dfebea32950010dad8476fd2f2978706d6a802f9fdefb91bb5f3ef7 | MATLAB | 1,091 | 22 | function Energy = GCO_Expansion(Handle,MaxIter)
% GCO_Expansion Run alpha-expansion algorithm.
% GCO_Expansion(Handle) minimizes the current energy via
% alpha-expansion until convergence.
% GCO_Expansion(Handle,MaxIter) runs at most MaxIter expansion
% Returns the energy of the computed labeling.... |
b84721050dedf93862373d9f1f04cc198548e4d8c64203c0980fc3f734fea059 | MATLAB | 1,091 | 38 | function imat=ea_resample_planes(V,meanfitline,sample_width,doxx,resolution)
% this function samples the 2D-planes orthogonally to the fitted trajectory
% line. The code has gotten a bit cryptic for speed improvement
% reasons.
xxvec=-sample_width:resolution:sample_width;
nn=length(meanfitline);
xxlength=length(xxvec)... |
4038293347c597f2424b7b547c96b7cc1bdadd6c63400ecac8c4227b8d128594 | MATLAB | 1,093 | 36 | function ea_write_fiducials(coords_mm,path,options)
% Small function to write fiducials (coordinates of electrode contacts) in
% Slicer3 format.
% __________________________________________________________________________________
% Copyright (C) 2014 Charite University Medicine Berlin, Movement Disorders Unit
%
% Andre... |
57c8d7e708f8d2425fee5ed2a83833eeebc47b101e4b68366cf0425ab11cdec2 | MATLAB | 1,093 | 49 | function [rho,pval,slope] = circ_corrcl(alpha, x)
%
% [rho pval ts] = circ_corrcl(alpha, x)
% Correlation coefficient between one circular and one linear random
% variable.
%
% Input:
% alpha sample of angles in radians
% x sample of linear random variable
%
% Output:
% rho correlation c... |
7ce646a4237a714a12007904fb6ebcaa1af50da3b364c627314efdc21d516490 | MATLAB | 1,094 | 43 | function out = pairwiseArea2Dkstest(allROIs, areas, coordField, alpha)
if nargin < 4
alpha = 0.05;
end
% Get data
allCoords = cat(1,allROIs.(coordField));
% Allocate
reject = zeros(length(areas), length(areas));
pvals = zeros(length(areas), length(areas));
ksstats = zeros(length(areas), length(areas));
% Plot po... |
f44b1dde3d507ce51354eb8a57345a01d9037039036337c7c7cc558e98d13a53 | MATLAB | 1,094 | 51 | function cvx_optval = sum_largest( x, k, dim )
%SUM_LARGEST Internal cvx version.
narginchk(2,3);
sx = size( x );
if nargin < 3 || isempty( dim ),
dim = cvx_default_dimension( sx );
elseif ~cvx_check_dimension( dim ),
error( 'Second argument must be a dimension.' );
elseif ~isnumeric( k ) || ~isreal( k ),
... |
031bb9b9c2a3458e27ce5fe2fad78b74dd5c144566d7840a12519aa9d44fa947 | MATLAB | 1,095 | 47 | function alldat=columnvangle(headpath)
cd('extracted2');
filelist=dir;
alldat={};
goodfilenum=1;
for k=1:numel(filelist)
dataname=filelist(k).name;
cd(headpath);
if contains(dataname,'_analysis2')
fileexpnum=dataname(1:end-14);%remove _analysis.mat from it to feed into next code and get the two
... |
107c23734dfdb84cda2bc3f8d59f36a1b32e73a77561c9a0d15fb83c10785048 | MATLAB | 1,095 | 29 | function obj = set_point_options( obj , varargin )
% set_point_options Set point size and marker options
%
% 'name',value pairs:
% 'base_size': Default/starting point size for geoms that take in account size
% aesthetics. Default is 5
% 'step_size': Increment in point size for 'size' categories. Default is 2
% 'use_inp... |
4fba1ed5b84a5c70283053f1cae5f4befdc4d954c70d00f71cdcbb74179e7c2d | MATLAB | 1,095 | 40 | function ea_rocrop(inputimage)
% Reorient and crop nifti image
% This is a workaround warpper to fix the 1KB output file issue of dcm2nii
pth = fileparts(inputimage);
if isempty(pth)
pth = '.';
end
disp(inputimage);
ea_dcm2nii(inputimage, [pth, filesep, 'temp.nii']);
tempf=dir([pth,filesep,'temp.nii']);
tempfsi... |
50d5f060ea0a297904a07aec2d09dfc9b8c15c1e0d3d7e80398990216bdf9afa | MATLAB | 1,095 | 60 | function icsi = calc_icsi(rgx,rgy)
% icsi computes the common inter-spike interval (see Fee et al., J Neurosci. Meth., 1996)
% Adrien Peyrache, 2012
% rewritten 1/4/2017 by David Tingley
temp = [rgx;rgy];
icsi = diff(sort(temp));
% lx = length(rgx);
% ly = length(rgy);
% icsi = [];
%
% [dummy,ix] = min([lx,ly]);
... |
99639de75c295410fe4728b1dff59393d1fd524371ba9637c75a30a20516d3dc | MATLAB | 1,095 | 25 | % ndims() - number of dimension of memory mapped underlying array
%
% Author: Arnaud Delorme, SCCN, INC, UCSD, Nov. 2008
% Copyright (C) 2008 Arnaud Delorme, SCCN, INC, UCSD
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
%... |
cd3afafea690285d99d6f73d9d5311b484e082b3dd691b543d8be7a713b0099a | MATLAB | 1,095 | 34 | function M = getaffine(surface_name, hemisphere);
%
% Usage:
% M = getaffine(surface_name, hemisphere);
%
% Description:
% Returns vox2ras transform for a surface (author: @saratheriver)
%
% Inputs:
% surface_name (string) - Name of surface {'fsa5', 'conte69'}
% hemisphere (string) - Name of hemisphere {'lh', '... |
20ec707249764a3fd281ebfe7043a73ef0efd4031f8a081d67078cd71fc48d3c | MATLAB | 1,096 | 26 | function cmap = tintmap(tint, M)
%TINTMAP Tinted monochrome color map.
% CMAP = TINTMAP(TINT, M), where TINT is a 1-by-3 RGB vector, returns an
% M-by-3 matrix containing a monochromatic color map based on the color
% TINT.
%
% CMAP = TINTMAP(TINT) uses the length of the colormap in the current
% fi... |
e41dfb0b0f10f27d8fd03cd7f61c45ae9055b6cfd1d6299b1ccdd03a2f480755 | MATLAB | 1,096 | 40 | function y = blkdiag( varargin )
%Disciplined convex/geometric programming information for BLKDIAG:
% BLKDIAG imposes no convexity restrictions on its arguments.
nv = 0;
nz = 0;
sz = [ 0, 0 ];
for k = 1 : nargin,
x = cvx( varargin{k} );
sx = x.size_;
if length( sx ) > 2,
error( 'N-D matrices no... |
ea65fe60ba1ad4000f5494ce3e8fd940f26568b4ac0d596d21dd37ea0d8719dd | MATLAB | 1,097 | 41 |
if any(~options_exist)
a2_set_default_options;
end
printhdr('Options used in this analysis:');
for i = 1:length(options_needed)
if ~exist(options_needed{i}, 'var') % If still can't find it
% ...use the default value specified above.
if ischar(option_default_values{i})
... |
42260ef2431dceb59b8199c4cfc3b56333e43fdc6d582a36412e063109055daa | MATLAB | 1,098 | 44 | %%*********************************************************
%% lmifun: generate SDP data for the LMI constraint
%% of the form:
%%
%% A*P*B' + B*P*A' + H*diag(d)*H'
%% P and d are variables, P is symmetric.
%%
%% H is optional.
%%*********************************************************
function Avec... |
a4bd66626a958dd372a9460d3d553423b700290ecb85eb4aa075712833454c7c | MATLAB | 1,098 | 34 | function order = CBIG_ASDf_hunMatch(K, Mean_ref, Mean)
% order = CBIG_ASDf_hunMatch(K, Mean_ref, Mean)
%
% This function performs Hungarian matching between the factor-specific RSFC
% patterns (i.e., E(RSFC patterns|Factor)) of two random initializations.
%
% Input:
% - K:
% An integer indicating the numb... |
e3fbef9c28f0909b9da167bbf1e6921bad171559a14c7d745f6234c348009364 | MATLAB | 1,098 | 33 | function [mesh_resources] = populate_mesh_resource_str(f, v, c)
%
% See also FACE_VERTEX_DATA_EQUALS_NPOINTS, MESH_NORMALS, VERBATIM.
%
% File: populate_mesh_resource_str.m
% Author: Ioannis Filippidis, jfilippidis@gmail.com
% Date: 2012.06.10 -
% Language: MATLAB R2012a
% Purpose: mesh resourc... |
3dd23c56f115edf14529143d2d4a7865251142b7242506a48df86f72187a1ed2 | MATLAB | 1,099 | 41 | function [allROIs, Y] = tSNEallROIs(allROIs, metricField, perplex)
% Performs tSNE dimensionality reduction on the z-scored feature matrix,
% then returns the original struct with tSNE space coordinates for each
% cell included
% Note: pass in only valid allROIs, perplexity depends on struct size
if nargin < 2
met... |
5e64f45e7f0bdaed362090a0037faa4c25cf02e5df10f619092c93ab4d7744eb | MATLAB | 1,099 | 35 | function plotGradientMapCCF(dorsalMaps, allROIs, metricField, smoothSDPts, smoothSDImg, cmapInfo)
% Creates a binned and smooth map of cell metric values from the field
% metricField, then compute the spatial gradient of this map and plots it
% as an RGB image
% Figure
allenMapSMc(dorsalMaps, [-3.6, 0, -2, 3]) % Creat... |
20b10a9ce4d3c39e67e95143d5830863dafc2571351e0aac9a5bdd8958e55491 | MATLAB | 1,100 | 22 | function saveDregdata(dreg, indxr, RegPara, handles, imageinfo, fext, k, indxr_base)
savename = RegPara.savenamebase;
if handles.crossSessionReg == 0
for k1 = 1:size(dreg,3)
nametmp = sprintf(['%0', num2str(floor(log10(RegPara.Imagelength))+1),'d.tif'], indxr(k1));
if ~isempty(fext)
imw... |
0d83c0e35e57fc861c95a53a40091c7f66f904c86d711e050859f4bfd727fb29 | MATLAB | 1,101 | 26 | % Run this script once to prep data files, save them, calculate contrast
% image objects, and get ready to run analyses.
%
% Before running, you need to customize two scripts for your analysis:
% a_set_up_paths_always_run_first.m
% prep_1_set_conditions_contrasts_colors.m
%
% If you have behavioral data and between-sub... |
1082c6f7d5ccdfbfe693eb79c24578ea9f9b64119dab82a4be54b623b130c786 | MATLAB | 1,101 | 37 | % ADJUST_KEY_STACK fix inconsistencies in a pointer into a struct
%
% ADJUST_KEY_STACK(obj, key_stack) follows the elements of `key_stack`
% through the structure of `obj`. If an element is missing from the
% pointer, it is inserted in the appropriate order. The (potentially)
% corrected pointer is returned.
f... |
f7c67ff0079e6421b436efd8c4bd5c7f075b36e29d0329973db714872165491f | MATLAB | 1,101 | 32 | function plot_header(self, cel)
% Used in Visualize2 primarily.
%
% root.plot_header(cel)
%
% prints the tetrode and cell number, current event labels, average firing
% frequency for these epochs.
% find event strings
if all(arrayfun(@(a) any(a==self.event{:,2}), self.epoch)) % if both timestamps exist in str... |
31d70b811095f9f0a35c0a24fdbbc335fb07888da8699d111d14241f9fbe32d6 | MATLAB | 1,102 | 38 | function [channelNumber] = plx_resolve_channel(filename, channel)
% plx_resolve_channel(filename, channel): returns .plx file spike channel number for the specified channel name
%
% [channelNumber] = plx_resolve_channel(filename, channel)
%
% INPUT:
% filename - file name
% channel - 1-based channel number o... |
5159541494979b369c60fb0d07fd3fed2aeae2019fcce9dc7d0865513507860f | MATLAB | 1,102 | 36 | function sout = cvx_pause( flag )
%CVX_PAUSE Pauses the processing of CVX models.
% CVX_PAUSE(TRUE) instructs CVX to pause and wait for user keypress before
% and after proceeding with the numerical solution of a model. The pauses
% occur within the CVX_END. This is useful for demo purposes.
%
% CVX_PAUSE(FA... |
8720d79a59219873f93d6d9f2d2a7ff3d8f689d14d4a13ea9607df181276b614 | MATLAB | 1,102 | 26 | function [f,findx]=getfgrid(Fs,nfft,fpass)
% Helper function that gets the frequency grid associated with a given fft based computation
% Called by spectral estimation routines to generate the frequency axes
% Usage: [f,findx]=getfgrid(Fs,nfft,fpass)
% Inputs:
% Fs (sampling frequency associated with the data)-... |
10a8b56df8c761accf49f9b7d900945e88a3998da3d529a041c3c96c66b5f455 | MATLAB | 1,103 | 36 | function cvx_optpnt = nonnegative( sx ) %#ok
%NONNEGATIVE The nonnegative orthant.
% NONNEGATIVE(SX), where SX is a valid size vector, creates an array
% of size SX and constrains each element to be nonnegative. Therefore,
% given the declaration
% variable x(sx)
% the constraint
% x == nonnegative... |
6057bbc23ed0780e1f9c2d7fbd233b3a49245bb3ae7546d225261627cb9f3105 | MATLAB | 1,103 | 29 | function [ D ] = isdiscrete(X)
%%ISDISCRETE True for arrays of discrete variable-compatible types.
%
% ISDISCRETE(X) returns true if X is an array of a data type suitable to be
% interpreted by ELPh as a discrete random variable. This is true for integer,
% logical, and categorical types, as well as for float and... |
cfff54c45d7aea558da7709383abc19d050b3a49346dbc9501b47b4fb55f535a | MATLAB | 1,103 | 34 | function [ts] = PL2TsBySource( filename, source, channelInSource, unit )
% PL2TsBySource( filename, source, channelInSource, unit ): read spike timestamps from a .pl2 file
%
% ts = PL2TsBySource( filename, source, channelInSource, unit );
% ts = PL2TsBySource( filename, 'SPK', 1, 2 );
% ts = PL2TsBySource( filenam... |
86591f19ef564c04ebcee65fa5bc95470fb207d2f53269241dbcaaeeb1596a9a | MATLAB | 1,104 | 31 | iUnit = iUnit+1;
%clf;%figure('Color', 'k');
subplot(1,5,[1:4])
hold on;
scatter(ephysData.spike_times_timeline(ephysData.spike_templates==iUnit), ephysData.template_amplitudes(ephysData.spike_templates==iUnit),...
[],prettify_rgb('Red'), 'filled')
ylabel({'Spike-to-template'; 'scaling factor'},'Color','w', 'font... |
c8c6bcc3164f93f1c08a90bd6c41822dde1032e5ca88aa6e693aec1c75fdce78 | MATLAB | 1,105 | 29 | function I = mat2cell_ov(X,xx_s,xx_f,yy_s,yy_f,zz_s,zz_f,overlap,sz)
% converts a matrix into a cell array with overlapping elements
% INPUTS:
% X: Input matrix
% grid_size: size of each element without overlap
% overlap: amount of overlap
% sz: spatial size of X
% OUTPUT:
% I: ... |
d6777911440d6fe648f3b79bb1225f7a24384039238c28ff5f3dc53d4eda753c | MATLAB | 1,105 | 43 | function mat=ea_antsmat2mat(afftransform,m_Center)
% followed instructions from
% https://www.neuro.polymtl.ca/tips_and_tricks/how_to_use_ants and ITK code
% in ComputeOffset() itkMatrixOffsetTransformBase.hxx
mat=[reshape(afftransform(1:9),[3,3])',afftransform(10:12)];
m_Translation=mat(:,4);
mat=[mat;[0,0,0,1]];
f... |
8c72d725ad763b8951b49af14392955fe65a73ed79c963e35f31c23e0174efbf | MATLAB | 1,106 | 51 | function [ x, sx, sy, zx, zy, nx, nv, perm ] = cvx_reduce_size( x, dim, do_reduce )
%
% Reduction dimension
%
zx = size( x );
if isempty( dim ),
dim = find( zx ~= 1, 1, 'first' );
if isempty( dim ), dim = 1; end
elseif ~isnumeric( dim ) || numel( dim ) ~= 1 || ~isreal( dim ) || dim <= 0 || isinf(dim) || isnan... |
cae03db38b7eb26ed2ae5436521c44b158eb763623e54cd1696b8ba59c727ccf | MATLAB | 1,106 | 42 | function ea_ttest(x,y,description,ylabel,groups,colors)
% this simple function is a small wrapper for a t-test figure and has been
% written to go in line with the ea_corrplot wrapper.
if ~exist('groups', 'var')
groups = {'0', '1'};
end
if exist('colors', 'var') && ~isempty(colors)
map = colors;
if isnume... |
418bb3c5b90baede6d0c5efc6cf935b65e3c2419446e794e155a463cb1aa2fea | MATLAB | 1,107 | 33 | function [data,sampling]=readdat
%
% function for reading *.mat, *.wav and *.au files
% *.mat files have to contain variables data and sampling in order for the
% returns to work properly
%
[fname,pname]=uigetfile('*.*');
strindex=findstr(fname,'.plx');
if ~isempty(strindex);
error('This file format can be ... |
8d4032d8139af31ffff383d974c00e0ab17bc0f81f0ee974121a7e883baa5f42 | MATLAB | 1,107 | 43 | %
% This function installs Blackrock Microsystems Neural Processing MATLAB
% Kit in MATLAB. Run "help FUNCTIONAME" to get more information about each
% function.
%
% Kian Torab
% kian@blackrockmicro.com
% Blackrock Microsystems
% Version 1.0.0.0
%
function installNPMK
disp('Removing the previous version of Neural Pro... |
55382da354d6f926d0691c9df36ca3b7f545269d3e649602c508ee16d4a26a13 | MATLAB | 1,108 | 45 | function vol=elemvolume(node,elem,option)
%
% vol=elemvolume(node,elem,option)
%
% calculate the volume for a list of simplexes
%
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2007/11/21
%
% input:
% node: node coordinates
% elem: element table of a mesh
% option: if option='signed', the volume is the... |
8db805a937a9cb9a1555d424d7c96b77f300eed78d2d911846bc9ece9e64c4af | MATLAB | 1,110 | 29 | function P = palm_idx2perm(I)
% Convert a set of indices into a
% sparse permutation matrix.
% _____________________________________
% Anderson Winkler
% FMRIB / University of Oxford
% Feb/2012
% http://brainder.org
% - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
% PALM -- Permutation Analysi... |
a39ae71102b780a29ffe818d66cdd0096e9ff608ca850d4f7db756104d4ea38e | MATLAB | 1,110 | 48 | function [t, f, S, clims] = plot_lfp_spectrogram(self, windowsize, windowinc, bandwidth, f_range, clims)
% Plots a spectrogram in jet colormap for current LFP
%
% Uses the Chronux toolbox.
%
% root.plot_lfp_spectrogram(lfp_ind, windowsize, windowsin, bandwidth,
% f_range);
import CMBHOME.Utils.*
AddChronu... |
c152a517f81bf3167616badb65d54fc28e2905bb3871d73eca4dafb19eadef08 | MATLAB | 1,110 | 19 | %extracts pulse parameters from pulse mat file associated w/ tifs
%containing traces w/ multiple pulses
function [PTfreq,PTdBampl,PTonsetInPulse,msPTpulseLen,msStimLen,msRamp,kHzSampleRate] = extractMapPulseParams(pulse)
pulseCellStr = {pulse.pulsename}';
PTonsetInPulse = str2double(strrep(strrep(string(regexp(puls... |
645048eb556f2b4f67142e3a443331173decfe5b376eb75ed1c35d016050a215 | MATLAB | 1,111 | 50 | function [rho pval] = circ_corrcl(alpha, x)
%
% [rho pval ts] = circ_corrcc(alpha, x)
% Correlation coefficient between one circular and one linear random
% variable.
%
% Input:
% alpha sample of angles in radians
% x sample of linear random variable
%
% Output:
% rho correlat... |
ef50557d3ff544562f0111383ebe56e03975271b6a4fb5008050b2d613d80210 | MATLAB | 1,111 | 43 | %wrap - Set radian angles in range [0,2pi] or [-pi,pi].
%
% USAGE
%
% y = wrap(x,offset)
%
% x angles in radians
% offset phase angle [0-2*pi] that circularly shifts output data
%
%
% SEE ALSO
%
% See also isradians, clinspace.
%
% Copyright (C) 2010-2011 by Michaë... |
b82c6f964d9669f5b6de4d75b35a49bbd7927365afdb06e950547d946cc4a413 | MATLAB | 1,112 | 46 | function y = diag( v, k )
%Disciplined convex/geometric programming information for DIAG:
% DIAG imposes no convexity restrictions on its arguments.
switch nargin,
case 0,
error( 'Not enough arguments.' );
case 1,
k = 0;
case 2,
if ~isnumeric( k ) || k ~= floor( k ),
... |
c88f7c4de05a4a2eda597c4f008781376c035227bbb8380297deee21f17af2a5 | MATLAB | 1,112 | 27 | function apref = ea_antspreset_ants_default_synquick(cmd)
if ischar(cmd) % 'query' mode, return the name of the preset
apref = 'ANTs Default: SyN Quick';
return
end
apref.rigid.gradientstep = '0.1';
apref.rigid.metric = 'MI';
apref.rigid.metricparams = '1,32,Regular,0.25';
apref.rigid.convergence='[1000x500x2... |
1f6906cab94765a0bb905135024e755a9fad37ad8a84adb8d5ad1cc42450b522 | MATLAB | 1,114 | 34 | function CancelBatch(batch)
%CancelBatch - Cancel batch job.
%
% USAGE
%
% CancelBatch(batch)
%
% batch batch parameter returned by <a href="matlab:help StartBatch">StartBatch</a>
%
% SEE
%
% See also StartBatch, GetBatch, BatchInfo, CleanBatches, Store, Recall.
%
% Copyright (C) 2010-2011 by Mich... |
3563c8ae49ec5b8b4852349f10653a9e92a817e175444823df2442c28015349f | MATLAB | 1,114 | 39 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% demo script for using short-hand version of the meshing wrappers
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% preparation
% user must add the path of iso2mesh to matlab path list
% addpath('../');
% user ne... |
508ccf1cefc7d09546c70388ffb2fda20943d57dd533b0c0f552c3432cc0315b | MATLAB | 1,114 | 37 | function varargout = ContinuizeEpochs(varargin)
% Converts all cell arrays passed through varagin to arrays in varargout
%
%
% If the cell array is Mx1, then that vararg output is a column vector. If
% the cell array is MxN, then the vararg output is a matrix max(cat(M) x N
% padded by zeros.
%
% This is useful in the ... |
eaa8b49637ce2f1415362caf80e14bda4c1f1da44039fe42f632d5a9c315ca81 | MATLAB | 1,114 | 50 | function [ind, min_val, max_val] = G_RangeLoc( vec, lim)
% Returns a logical vector with the same length to input
%
% Input
% vec, e.g. a time vector; vec = linspace( -0.5, 2, 1000);
% rng, e.g. a time range; rng = [-0.25, 0];
%
% Output
% ind, a binarized vector indicating the location of the desinated range
%... |
8c540c7c978608cf55022fca239ede0433a81642ed6cbf5f196c320a5f4fc440 | MATLAB | 1,115 | 24 | %% applyFSLTransformToPoints - transform points in world coordinats of sourceRefImage to
% world coordinates in targetRefImage applying a FSL (FLIRT) transformation
% matrix. world coordinates in PaCER style. (note L/R orientation in plots
% i.e. axis ij vs axis xy!)
%
% Parameters: points - Nx3 matrix
% fs... |
96b019302f9c061f28dfbda06590a14d6e6dc95b61f1a8ca9e0c0e2f70f1ec2d | MATLAB | 1,115 | 44 | function [ ] = NiceSave(figname,figfolder,baseName,varargin)
%NiceSave(figname,figfolder,baseName,<options>) formats the figure for best viewing
%and saves it as a .pdf in figfolder with name recname_figname.pdf
%
%INPUTS
% figname string with title of figure
% figfolder folder to save figure to
% baseName... |
58fe075cc40ed4c6fae10633dd18a685df6713320d19f4a3e1072764df9ac183 | MATLAB | 1,116 | 32 | function propLongISI = computePropLongISI(theseSpikes, longISI)
spiking_stat_window = max(theseSpikes) - min(theseSpikes);
spiking_stat_bins = [min(theseSpikes), max(theseSpikes)];
% Get firing rate across the session
bin_spikes = ...
histcounts(theseSpikes, ...
spiking_stat_bins);... |
720935d9cd68a2c09a9e40b649ed2b0760829706c462a74891e53228f8fb75a4 | MATLAB | 1,116 | 40 | function opt=varargin2struct(varargin)
%
% opt=varargin2struct('param1',value1,'param2',value2,...)
% or
% opt=varargin2struct(...,optstruct,...)
%
% convert a series of input parameters into a structure
%
% authors:Qianqian Fang (q.fang <at> neu.edu)
% date: 2012/12/22
%
% input:
% 'param', value: the input par... |
0f7614aba6a6854ad8ad5defc8827bee72266dd4fcb268d3b80ae09b52b50579 | MATLAB | 1,117 | 28 | function ea_run_Martinos_Launchpad_compile(options)
% This is a function that runs code for each subject on a cluster. It needs
% to be adapted to suit your needs. Then, you can "Export code" using
% Lead-DBS and simply change the command ea_run to ea_run_cluster.
jobFile = [options.root, options.patientname, filesep... |
39ce6a9757c1c638e7be92b62405e75cfc5c0b95cb1d9a269b085d237636b168 | MATLAB | 1,117 | 53 | function [out,cmap] = show(a,windfact,ncolors)
% usage .. show(a,f);
% displays matrix "a" as a greyscale image in the matlab window
% and "f" is the optional window factors [min,max]
verbose_flag=0;
title_flag=1;
if nargin<3, ncolors=128; end;
if nargin<2, windfact=[]; end;
if isempty(windfact),
amin ... |
d54e6ab96d6e5c8d8749bd044a17c1a0b2c611c87275f43f2dd267c605273fa4 | MATLAB | 1,117 | 37 | function plotEventTimes(eventTimes, eventName, eventLabel, yLims, yTicks, yLabs)
% Simple plot of boxplots depicting distributions of the
% times of the chosen event for all animals
fig;
hold on;
panelwidth = 2.5;
panelheight = 1.5;
leftoffset = 0.5;
bottomoffset = 0.5;
formatFigure(gcf, panelwidth, panelheight, lefto... |
538c5b9cbfa3b97ad8cf4f3755a997f47df2b252d8e044bc8cdb7e1e97e4d7e3 | MATLAB | 1,118 | 27 | function X = cell2mat_ov(I,xx_s,xx_f,yy_s,yy_f,zz_s,zz_f,overlap,sz)
% converts a cell array to a matrix when the cell elements overlap
% INPUTS:
% I: cell array
% grid_size: true size of each element
% overlap: amount of overlap in each direction
% d1: number of rows of matrix
% d2: ... |
9e05958b4c19fd8c707c3d503122263ccf1f7cf8c530137afd3b42fc878c1e89 | MATLAB | 1,118 | 34 | function countSpots_old(imPath, wellPath, sgeID)
d = dir(fullfile(imPath, '*.mat'));
fname = d(sgeID).name;
load(fullfile(imPath, fname));
x = strsplit(fname, '_');
jsonname = fullfile(wellPath, x{1}, 'scalefactors_json.json');
w = jsondecode(fileread(jsonname));
R = ceil(w.spot_diameter_fullres/2);
tb... |
171585e6b1b30b383aeff9ea45b2b11b8ec266da0c274934a00c0e0684d3d411 | MATLAB | 1,119 | 39 | function fnew=removeisolatedsurf(v,f,maxdiameter)
%
% fnew=removeisolatedsurf(v,f,maxdiameter)
%
% remove disjointed surface fragment filtered by using mesh diameter
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% v: list of nodes of the input surface
% f: list of triangles of the input surface
% m... |
e01cb257f4e87b9ac400c189e441e9101d8b27307744a70f0e03e21f27ca4669 | MATLAB | 1,119 | 30 | fprintf(1,'Executing %s at %s:\n',mfilename(),datestr(now));
ver,
try,
if isempty(which('spm')),
throw(MException('SPMCheck:NotFound', 'SPM not in matlab path'));
end
[name, version] = spm('ver');
fprintf('SPM version: %s Release: %s\n',name, version);
fprintf('SPM p... |
58c56f7d4da77d8348dde1783abfa65a3aa8810343448cd0c0f6716e7df72146 | MATLAB | 1,120 | 62 | function xini = grid_search(y, f, x, lb, ub, NstepsGrid)
tic
disp(' - Performing Grid Search')
Nparams = numel(lb);
% Create the grid
disp(' - Creating the Grid')
for i=1:Nparams
eval(['p' num2str(i) ' = linspace(' num2str(lb(i)) ',' num2str(ub(i)) ',' num2str(NstepsGrid) ');']);
end
command = '[p1';
for i=2... |
899a730d6cdd306e9cce99e12d59a765e5d19a4fed45abd36c440b094a9164ee | MATLAB | 1,120 | 39 | function d2 = ea_tdhandles2options(tdhandles,fd2)
% defaults:
d2.col_overlay=1;
d2.con_overlay=1;
d2.con_color=[1,1,1];
d2.lab_overlay=1;
d2.bbsize=50;
d2.backdrop='ICBM 152 2009b NLIN Asym T2';
if isempty(tdhandles) % call from somewhere else, return defaults or loaded file
try
p = ea_prefs('');
... |
35fb2895e250bf6b200349c1d6f1dd3cb3fa1c1f41aac1fa5dfc21770703c88f | MATLAB | 1,121 | 33 | function [w,rho] = mh(A)
% Computes the Metropolis-Hastings heuristic edge weights
%
% [W,RHO] = MH(A) gives a vector of the Metropolis-Hastings edge weights
% for a graphb described by the incidence matrix A (NxM). N is the number
% of nodes, and M is the number of edges. Each column of A has exactly one
% +1 and one ... |
e0873215665111a832442f0ab0f20cf5f965ec8ada04d14b6614faafaa883652 | MATLAB | 1,121 | 47 | function ea_libs_helper(libpath, setpath)
% add/remove shared libraries to search path
% Use current folder as libpath by default
if nargin < 1 || isempty(libpath)
%load prefs for platform specific handling
prefs = ea_prefs;
% Check and load runtime libs when needed
arch = ea_getarch;
if eval(['p... |
1cb4cfd7e01720fb6d48cbde112e107e31d641c48193c7c9daeb8b7ded769b61 | MATLAB | 1,122 | 25 | function new_dist = pbc_dist(old_dist, box_size)
% PBC_DIST Apply the minimum-image convention under periodic boundary
% conditions (PBC) to a displacement (or array of displacements).
%
% new_dist = PBC_DIST(old_dist, box_size) wraps any displacement whose
% magnitude exceeds half the box size back into the range... |
90c32b758bb7c1d0074cd194f58f3471b0efb61f495031e4b893bdc4c097fda5 | MATLAB | 1,122 | 35 | function data=createdatamatpt(data,E,win)
% Helper function to create an event triggered matrix from a single
% channel of spike times.
% Usage: data=createdatamatpt(data,E,win)
% Inputs:
% data (input spike times as a structural array or as a column vector) - required
% E (events to use as triggers) - require... |
b4bab61dbe92367b1fca85f4032141b8014e2f6ea7b2c33aed32147537aea5cc | MATLAB | 1,123 | 37 | function imgdiff=imedge3d(binimg,isdiff)
%
% imgdiff=imedge3d(binimg,isdiff)
%
% Extract the boundary voxels from a binary image
%
% author: Aslak Grinsted <ag at glaciology.net>
% modified by Qianqian Fang <fangq at nmr.mgh.harvard.edu>
%
% input:
% binimg: a 3D binary image
% isdiff: if isdiff=1, output will be... |
e974aaec7c6a4f9b3ea25cb317d302e6177da5d8e62da89f7718e070bdb06c0f | MATLAB | 1,123 | 46 | function saveinr(vol,fname)
%
% saveinr(vol,fname)
%
% save a surface mesh to INR Format
%
% author: Qianqian Fang, <q.fang at neu.edu>
% date: 2009/01/04
%
% input:
% vol: input, a binary volume
% fname: output file name
%
% -- this function is part of iso2mesh toolbox (http://iso2mesh.sf.net)
%
fid=fopen(f... |
1ff6d8bfabbd2785f0187436192f518fb5bdef64e80bea9691b64edd4ed22433 | MATLAB | 1,124 | 27 | function edu = CBIG_MMLDA_get_edu(PTDEMOG_file, phase, rid, viscode)
% edu = CBIG_MMLDA_get_edu(PTDEMOG_file, phase, rid, viscode)
%
% Get education year from PTDEMOG spreadsheet.
%
% Input:
% - PTDEMOG_file : Demographic spreadsheet
% - phase : cell array of phase for subjects. Each cell contains 'ADNI1'... |
24289fa89a3e876e13c1cd0d15b6d43fd4f86e8aac80c674d43507e9f12f7f8d | MATLAB | 1,124 | 34 | % Computes clustering coefficient, based on triangle motifs count and local clustering
% C1 = num triangle loops / num connected triples
% C2 = the average local clustering, where Ci = (num triangles connected to i) / (num triples centered on i)
% Ref: M. E. J. Newman, "The structure and function of complex networks"
%... |
0de061c4740aea9be7a8bd65b2e4617c3bf5df5b7cc2f78dd833a4ceeb5af64c | MATLAB | 1,125 | 46 | function out = filterAudio(trial,ord1,ord2)
% load a trial of mic data
% 1000 Hz sample rate assumed
% load(trialname);
for row = 1:size(trial,1)
figure; set(gcf,'Position',[500 150 1000 700]); hold on;
subplot(3,2,1); plot(trial(row,:))
subplot(3,2,2); spectrogram(trial(row,:),... |
699d630dae0b948a02b50f0a7e7eb37988178d14b9057c1817aa0aa82a16e64e | MATLAB | 1,125 | 48 | function [U,labels,Z] = FRID(X,k,alpha,numanchor,ifnorm,nrepanch)
% Input:
% X: The neural activity, size of neuron number x time steps
% k: number of clustering
% alpha: sparisity penalty parameter
% numanchor: anchor number
% ifnorm: bool, if perform normalization
% nrepanch: number of repetitions on finding anchor
... |
6dcf6ed64ad448e9d7f6ece9ee5aa76823f87bfecb71dc23060a3aebb12ccebc | MATLAB | 1,125 | 46 | % Local Regression and Likelihood, Figure 4.3.
% Author: Catherine Loader
%
% Residual plots for local likelihood.
% Henderson-Shepherd Mortality Data.
load morths;
fit = locfit(age,deaths,'weights',n,'family','binomial','alpha',0.5);
figure('Name','fig4_3a: Residual plots for local likelihood');
plot(age,residuals(f... |
bc91adcdc316d90ae238943d3b5f1325f4807b5e543b2d68c6785eeedfe4d637 | MATLAB | 1,125 | 39 | function [wavelet, t] = MorletWavelet( f, numcyc, si )
%MorletWavelet(f,numcyc,si) creates a Mortlet Wavelet of numcyc cycles with
%frequency f (Hz). si: sampling interval
% Adapted from Cohen Ch13
%
%TO DO:
% -Add ability to define width in bandwidth instead of cycles (varargin)
%
%Last Updated: 3/15/15
%DLevenst... |
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