sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
3c23f806373c31d25f3364f572214f8febe98b46fa35028153630442a3cbef1e | MATLAB | 1,312 | 59 | function [pval, f] = circ_ktest(alpha1, alpha2)
% [pval, f] = circ_ktest(alpha1, alpha2)
%
% A parametric two-sample test to determine whether two concentration
% parameters are different.
%
% H0: The two concentration parameters are equal.
% HA: The two concentration parameters are different.
%
% Inpu... |
c3d1fd8ba94f4d5c209d26f17b15ef2f05d1a4f09f73517164c69662fad81a82 | MATLAB | 1,312 | 42 | % Section 5.2.4: Solves a simple QCQP
% Boyd & Vandenberghe, "Convex Optimization"
% Joëlle Skaf - 08/23/05
%
% Solved a QCQP with 3 inequalities:
% minimize 1/2 x'*P0*x + q0'*r + r0
% s.t. 1/2 x'*Pi*x + qi'*r + ri <= 0 for i=1,2,3
% and verifies that strong duality holds.
% Input data
... |
b3b0731fc97e54bf361e696510471c80403da6c3f299fd14c2df8eaec0b921c2 | MATLAB | 1,313 | 59 | function [pval, f] = circ_ktest(alpha1, alpha2)
% [pval, f] = circ_ktest(alpha1, alpha2)
%
% A parametric two-sample test to determine whether two concentration
% parameters are different.
%
% H0: The two concentration parameters are equal.
% HA: The two concentration parameters are different.
%
% Inpu... |
eb64462b948f0b181a7388518de7f1be75a0a55d2aae4c38c0da342c7a9891be | MATLAB | 1,313 | 36 | %%*****************************************************************
%% HKMcorr: corrector step for the HKM direction.
%%
%% SDPT3: version 3.1
%% Copyright (c) 1997 by
%% K.C. Toh, M.J. Todd, R.H. Tutuncu
%% Last Modified: 16 Sep 2004
%%*****************************************************************
function [dX,dy,... |
96419a3e499aa17d399a588446fc6ef7f4b92613dd7cc21570175b3559c03bcb | MATLAB | 1,314 | 44 | function [tmp] = ea_diode_respecifyslices(tmp,ct,cscale,electrode,activecontact)
if ct.mat(1,1) < 0
for k = 1:length(tmp)
tmp{k} = flip(tmp{k},1);
end
end
if ct.mat(2,2) < 0
for k = 1:length(tmp)
tmp{k} = flip(tmp{k},2);
end
end
for k = 1:length(tmp)
sp(k) = subplot(numel(tmp),1... |
004116c9aef32ec9f9a720b626f013fc4f75feb5c0a777e5fdae8abc4d129ae5 | MATLAB | 1,315 | 39 | function [ft_struct,ft_todss] = Robs_automaticICA(data,eye_channels_idx, NREMOVE)
%addpath([U '\NoiseTools\']); % http://audition.ens.fr/adc/NoiseTools/
ft_struct = data ;
[B,A]=butter(2,1/(data.fsample/2), 'high');
x = cat(2,ft_struct.trial{:})';
%x = nt_trial2mat(eeg_asr.trial);
x(isnan(x)) = 0;
xori... |
5215b49006b489b2d69ddc87e4ea8d18a969a5ad92fe5adf34e110984b6f418c | MATLAB | 1,315 | 38 | %%************************************************************************
%% NTcorr: corrector step for the NT direction.
%%
%% SDPT3: version 3.1
%% Copyright (c) 1997 by
%% K.C. Toh, M.J. Todd, R.H. Tutuncu
%% Last Modified: 16 Sep 2004
%%************************************************************************
func... |
3209f6a6dac038ee106446681d3af770f2140078bc3c1dc584869f1bf427aa13 | MATLAB | 1,316 | 34 | % Local Regression and Likelihood, Figure 6.1.
%
% Derivative (local slope) estimation, for the Old Faithful Geyser Data.
% The 'deriv' argument specifies derivative estimation,
% 'deriv',1 First-order derivative.
% 'deriv',[1 1] Second-order derivative.
% 'deriv',2 For bivariate fits, partial de... |
7b4e50fa3ffbf10ec1b33af625cd8f61e0034657d79d923c145997a66c441328 | MATLAB | 1,316 | 49 | function cvx_optval = berhu( x, M, t ) %#ok
%BERHU Internal cvx version.
%
% Check arguments
%
narginchk(1,3);
if ~cvx_isaffine( x ),
error( 'Disciplined convex programming error:\n HUBER is nonmonotonic in X, so X must be affine.', 1 ); %#ok
end
if nargin < 2,
M = 1;
elseif isa( M, 'cvx' ),
error( ... |
a3cd23db9d45036b522a0ec0ba33ce76270128b9d31958e29a12a3509bc47a15 | MATLAB | 1,317 | 36 | function [imgRGB, cmap] = grid2RGB(map, mask, cmapInfo)
% Converts a scalar map shaped like an image into an RGB 3 channel image
% based on the desired colormap type specified by the shape/type of
% colorInfo
cmapRes = 256;
nY = size(map,1);
nX = size(map,2);
imgRGB = zeros(nY,nX,3); % RGB image to output
values = map... |
9a0b7359ba7f7bef5b86166220368bebde4555ef1572326e5e90e4554c249a9b | MATLAB | 1,318 | 47 | % Minimum volume ellipsoid covering a finite set
% Section 8.4.1, Boyd & Vandenberghe "Convex Optimization"
% Almir Mutapcic - 10/05
% (a figure is generated)
%
% Given a finite set of points x_i in R^2, we find the minimum volume
% ellipsoid (described by matrix A and vector b) that covers all of
% the points by solvi... |
7f63d77ab3065eb112610d1024bf2c49a98aae045390474845e68a866665c395 | MATLAB | 1,319 | 51 | function writestreamstring5( WS , WO , ncharsperline , maxlines , fid , x , z , thr , NC , T );
L = [];
N = length( WS );
NL = 0;
for i=1:N
if (WS( i ) == 0)
L = [ L '. ' ];
spanst = 'normal';
word = '. ';
else
word = WO{ WS( i )};
probs = x( : , ... |
8338044d8f617ac2ab0dedf81a96532f4ef90dcc08ccdd9f4e127cb8e0a195f1 | MATLAB | 1,319 | 43 | EXCLUDE_DEMO_TRIALS = 1; % also set in globalsConditions.m
all_subjects = [1:10 12:15 17:26 28:41 57 62 64 65 69 72 77 78 82 90 91 94 101:106];
excluded_subjects = [1 3 4 13 21 25];% [1 3 4 13 21];% low performance in control task or only one session
subjects = setdiff(all_subjects,excluded_subjects);
group{1} = su... |
88056b2f24839135a82316caefe24a21e3764f0ff6a8f298773a2fbb036328c2 | MATLAB | 1,319 | 26 | function ea_add_unifiedmapping(~,~,leadgroup,resultfig)
% small function to open ea_unifiedmappingexplorer. lead group can be a path to
% either lead group analysis file or saved fiber explorer.
if ismember('M', who('-file',leadgroup)) % Add new network mapping analysis
exp = ea_unifiedmappingexplorer(leadgroup,re... |
acc9fee4a8bab7b73893154af0dc05e82095166458c72be5da4cb61d51812fb8 | MATLAB | 1,319 | 44 | function surface_connectivity = calc_surface_connectivity(surface)
% calc_surface_connectivity.m
%
% Calculate surface-based connectivity matrix
%
% Input: surface : surface structure with fields
% vertices and faces
%
% Output: surface_connectivity : surface connectivity ma... |
39f68ae8278a09b03dd174a477272080ea9b1f422d95cc796abe8647a085e6f3 | MATLAB | 1,320 | 52 | % load data file ('dataf') preprocessed with fieldtrip
% and show in eeglab viewer
%
% This function is provided as is. It only works for some specific type of
% data. This is a simple function to help the developer and by no mean
% an all purpose function.
function [EEG] = fieldtrip2eeglab(dataf)
[ALLEEG EE... |
65192894a3da3146b64b3a27f140658d7e56a4bdae28de23f8d3c79c1a6ef9f9 | MATLAB | 1,321 | 63 | function [X,Y,polygon] = UISelect
%UISelect - Interactively select polygon zone in an existing plot.
%
% USAGE
%
% [X,Y,p] = UISelect
%
% X,Y polygon coordinates
% p handle for polygon object in figure
%
% SEE
%
% See also UIInPolygon
%
% Copyright (C) 2009-2011 by Michaël Zugaro... |
bd9e919885d2e9af77249f8f14d7035f47bdc50ac5d0a9507c419891b646fb83 | MATLAB | 1,321 | 52 | % Euclidean distance between polyhedra in 2D
% Section 8.2.1, Boyd & Vandenberghe "Convex Optimization"
% Joelle Skaf - 10/09/05
% (a figure is generated)
%
% Given two polyhedra C = {x | A1*x <= b1} and D = {x | A2*x <= b2}, the
% distance between them is the optimal value of the problem:
% minimize || x ... |
c89e7573c278e33349af2b5f27da53414951997d089b6cf4d76177512009cc03 | MATLAB | 1,321 | 40 | function bz_EditSessionMetadata(basepath)
% Sets up to allow user to edit session meta data in the specified session
% basepath. Looks for a metadata file, if it doesn't find it, it creates a
% copy of the default template in the basepath. Then opens the basepath
% .SessionMetadataText.m file in the editor for user i... |
fbbd41ea72f5c8371676f3c59db881829e26db1fdae627d9fdf0af04a1d450d6 | MATLAB | 1,321 | 37 | function Y2d = palm_conv4to2(Y4d)
% Convert a 4D dataset (x,y,z,t) into a 2D array (t,x*y*z)
% that can be used in a multivariate GLM
%
% Usage:
% Y2d = conv4to2(Y4d);
%
% _____________________________________
% Anderson M. Winkler
% FMRIB / University of Oxford
% Sep/2012
% http://brainder.org
% - - - - - - - - - -... |
0aab15f05ebd96f380dbfaf4468b9ddf9023458920f93b147b0867ad3c8486a6 | MATLAB | 1,322 | 40 | function plotROItSNE(allROIs, color)
% Plots tSNE coordinates for allROIS, all with one coloring
if nargin < 2
color = 0.5*[1, 1, 1];
end
% Create plot
fig;
axis square
axis off
% Get data
allCoords = cat(1,allROIs.tsneCoords);
% Get axis boundaries
xLims = [min(allCoords(:,1)) + 0.2*min(allCoords(:,1)), max(al... |
5723f5999fd486cf754a60acea30996f83d5954fd00f3e6856f2956a1eba1117 | MATLAB | 1,322 | 52 | function [] = PL2Print(cellArrayOfStructures)
% PL2Print(cellArrayOfStructures): prints cell array of structures
%
% PL2Print(cellArrayOfStructures)
%
% INPUT:
% cellArrayOfStructures - cell array of identical structures
%
% OUTPUT:
% prints specified cell array
if nargin ~= 1
error 'expected 1 inp... |
b552f2ebc9d38a9e844ef80eb858f7005c6dcfaf04dd8995e4fd56affbf4ca39 | MATLAB | 1,322 | 38 | function y = avg_abs_dev_med( x, dim )
%AVG_ABS_DEV_MED Average absolute deviation about the median.
% For vectors, AVG_ABS_DEV_MED(X) is the average absolute deviation of X
% about its median; that is, AVG_ABS_DEV_MED(X)=MEAN(ABS(X-MEDIAN(X))).
% For matrices, AVG_ABS_DEV_MED(X) is a row vector containing the... |
d72bec24fb67b6294c0eaf09ac95f26ceb48683a9f8859b889f0df4ac55c8f68 | MATLAB | 1,322 | 42 | % Euclidean projection on a hyperplane
% Section 8.1.1, Boyd & Vandenberghe "Convex Optimization"
% Joelle Skaf - 10/04/05
%
% The projection of x0 on a hyperplane C = {x | a'*x = b} is given by
% minimize || x - x0 ||^2
% s.t. a'*x = b
% It is also given by P_C(x0) = x0 + (b - a'*x0)*a/||a||... |
3fbe3f1ee06e796e94ebcb5358c7eac57c17722504bb973cccae3b8378d77bb1 | MATLAB | 1,323 | 40 | function y = avg_abs_dev( x, dim )
%AVG_ABS_DEV Average absolute deviation (about the mean).
% For vectors, AVG_ABS_DEV(X) is the average absolute deviation of X
% about its mean; that is, AVG_ABS_DEV(X)=MEAN(ABS(X-MEAN(X))). For
% matrices, AVG_ABS_DEV(X) is a row vector containing the average
% absolute de... |
88f111b2fc5d728356ee5fb9f614662564df26a5fac0182dc35d3c6909f69564 | MATLAB | 1,323 | 42 | close all;
clear;
clc;
addpath(genpath('../../functions/'));
%% Read in Mem and EF
subInfo = csvread('../../subInfo/rid_sex_mDoB_yDoB_mExam_yExam_ageExam_dx_icv_bl.csv');
rid_dx = subInfo(:, [1 8]);
rid_viscode_examdate_mem_ef = CBIG_get_mem_ef(rid_dx(:, 1), 0); % all data of 810 subjects
%% Compute normalization ... |
4d9e79fda089720a13779192d1621a3f908c888408b3c218c1d606db63f723e7 | MATLAB | 1,325 | 35 | function ea_atropos2segmask(rawSegmaskFile, anchorModality)
% Convert atropos segmask (indices ordered by intensities) to standard OSS
% segmask
% By Butenko, konstantinmgtu@gmail.com
arguments
rawSegmaskFile % path to segmask generated by atropos
anchorModality % first image used for atropos segment... |
f86a4febca5f7cbcb1a8860ca971529f4b028a7b1273e8da96ae9cdb66ef9314 | MATLAB | 1,325 | 32 | %CustomDefaults - User-defined custom default values for function properties.
%
% The behavior of most FMAToolbox functions can be modified using optional
% property-value pairs, e.g. GetPositions returns position samples in different
% coordinate systems depending on the property 'coordinates'. Such properties
% u... |
2e0ef8afbf95c40e65cf04f9b8b8cecc96607cd289964d20cc8d788dd8becff5 | MATLAB | 1,326 | 45 | function x = cvx_collapse( x, keeptemp, tocell )
if nargin < 2, keeptemp = false; end
if nargin < 3, tocell = false; end
while true,
sx = size( x );
nx = prod( sx );
switch class( x ),
case 'cell',
if nx == 1,
x = x{1};
continue;
end
... |
9eceaf1aea5996a3f43bfbcc7ed778155801e2edfb06e31ae874f2335b501d45 | MATLAB | 1,326 | 33 | function obj = set_text_options( obj , varargin )
% set_text_options Provide text size and font options
%
% 'name',value pairs:
% 'base_size': Base text size, corresponds to axis ticks text size (default is 10)
% 'interpreter': 'none'(default), 'tex' or 'latex'
% 'label_scaling': Scaling of axis label sizes relative to... |
ddfd83d333081ccbb259b2cc42661a87a7f39257498388e294ddb0c42b881d31 | MATLAB | 1,326 | 37 | function [dtd err] = nifti_to_DTD(data_names,T)
tensor = nifti_to_mrstruct('series3D',data_names);
evals = zeros(size(tensor.dataAy,1),size(tensor.dataAy,2),size(tensor.dataAy,3),3);
evecs = zeros(size(tensor.dataAy,1),size(tensor.dataAy,2),size(tensor.dataAy,3),3,3);
for x = 1:size(tensor.dataAy,1),
for y = 1:si... |
12dd635994899d243a9a8aa13d72e26133ce28589f222d19d8b0966df3b7adcb | MATLAB | 1,327 | 32 | function cvx_optval = log_det( X )
%LOG_DET Logarithm of the determinant of an SDP matrix.
% For a square matrix X, LOG_DET(X) returns
% LOG(DET(X))
% if X is symmetric (real) or Hermitian (complex) and positive semidefinite,
% and -Inf otherwise.
%
% When used in a CVX model, LOG_DET(X) causes CVX's s... |
272d13efebafdf7ef5ce39ff0c047ff0778007e9a1735a323b4b7d0b6bfa025a | MATLAB | 1,327 | 62 | function [fnameArray] = path2array(fname)
% function [fnameArray] = path2array(fname)
%
% takes in a string representing the path to a file or folder and breaks it
% into a cell array in which each cell holds the portions of the filename
% that were between file seperator symbols ('/' or '\').
%
% This will help use ... |
b231fcf289c6e773de0a5ba2eb4989a3191be8c6a32ab24366870223be1b62a2 | MATLAB | 1,327 | 51 | function varargout= make_maximal_planar(A,varargin)
% MAKE_MAXIMAL_PLANAR Add edges to construct a maximal planar graph
%
% M = make_maximal_planar(A) generates a new graph M with additional edges
% so that adding any other edge will make a non-planar graph.
%
% [ei,ej] = make_maximal_planar(A) returns the additional... |
dab6e971cb5c9f20e1f57366c2429bb1859312a3af0b431903130a3df23c75ac | MATLAB | 1,327 | 51 | function [res] = build_and_verify_mexPlex()
% this script will build and verify mexPlex
%
% OUTPUT:
% returns 1 if all verification tests passed
% returns 0 if some of the verification tests failed
%
% if ReadingPLXandDDTfilesinMatlab-mexw.zip was inzipped to
%
% C:\PlexonMatlab
%
% this script should b... |
4f3b383cfbcc4aa638600101b8b0f4b9251b8acc8fd0246d69686912aeda6002 | MATLAB | 1,328 | 36 | function []=CBIG_gwMRF_create_FSL_LUT(filename,colors)
% [] = CBIG_gwMRF_create_FSL_LUT(filename,colors)
%
% This function takes a nx3 colors vector, where n is the number of colors
% and creates a FSL compatible LUT file.
%input
% - filename: the output .lut file
% - colors: nx3 colors vector, where n is the number... |
e92408d1f8f34560077efe372c04a224663a7f531f67d5932204ef934fb54022 | MATLAB | 1,328 | 40 | function Yp = myPLS_permuteY(Y,grouping,grouped_perm)
% This function permutes the Y matrix during permutation testing
%
% Inputs:
% - Y : N x B vector, N is #subjects, B is #behavior/design
% scores, behavior/design data (normalized)
% - grouping : N x 1 vector, subject groupi... |
2714d7498807d38162603f4cd673e6cf1b042ce951d518716f1293257ab425f2 | MATLAB | 1,329 | 38 | function plot_matrix(X,t,f,plt,Xerr)
% Function to plot a time-frequency matrix X. Time and frequency axes are in t and f.
% If error bars are specified in Xerr,
% it also plots them. Xerr contains upper and lower confidence intervals
% on X.
% Usage: plot_matrix(X,t,f,plt,Xerr)
% Inputs:
% X: input vector as ... |
2d5bb59ad836690e8a572194f03ee5278d58a9cef3d80dc798cbe6d2d684793e | MATLAB | 1,329 | 47 | %% Optimization of a simple (Rosenbrock) function, with no constraints
rosen = @(x) (1-x(1)).^2 + 105*(x(2)-x(1).^2).^2;
% With no constraints, operation simply passes through
% directly to fminsearch. The solution should be [1 1]
xsol = fminsearchbnd(rosen,[3 3])
%% Only lower bound constraints
xsol = fminsearchbnd(... |
654a3cdc632aae15136e6b3482d39052b3d16863eba77a39bf5d4bb38bf47f4b | MATLAB | 1,330 | 54 | function write_vtk(fn, pnt, tri)
% WRITE_VTK writes a triangulation to a VTK (Visualisation ToolKit) format file.
% Supported are triangles, tetraheders and hexaheders.
%
% Use as
% write_vtk(filename, pnt, tri)
%
% See also READ_VTK, WRITE_PLY
% Copyright (C) 2002, Robert Oostenveld
%
% $Id$
fid = fopen(fn, 'wt')... |
ade67a729cecfeac8d4e952ccc16200a290ea153736bd34a82994b414feb63d6 | MATLAB | 1,330 | 49 | function cvx_optval = huber_pos( x, M, t ) %#ok
%HUBER Internal cvx version.
%
% Check arguments
%
narginchk(1,3);
if ~cvx_isconvex( x ),
error( 'Disciplined convex programming error:\n HUBER_POS is convex and nondecreasing in X, so X must be convex.', 1 ); %#ok
end
if nargin < 2,
M = 1;
elseif isa( M, ... |
1d4a344a8494592f146f830c2baec638055ab5546ee872adaedf006c033d8bb4 | MATLAB | 1,331 | 44 | function [s] = keepfields(s, fields)
% KEEPFIELDS makes a selection of the fields in a structure
%
% Use as
% s = keepfields(s, fields);
%
% See also REMOVEFIELDS, COPYFIELDS
% Copyright (C) 2014, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.fieldtriptoolbox.org
% for the documentation and d... |
32482d224d14697956a438eee6a50f153cf4729b69d5f1028eb25258cd403a2c | MATLAB | 1,331 | 25 | % demo_SOFAplotHRTF - script demonstrating the usage of SOFAplotHRTF
% Copyright (C) 2012-2013 Acoustics Research Institute - Austrian Academy of Sciences
% Licensed under the EUPL, Version 1.1 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "License")
% You may n... |
672dab7b09d35adefd14830899a9d46aac8182cbe4398389ba69f337adaa8692 | MATLAB | 1,331 | 51 | function RecreateTspFile(fbasename)
tspdata=load([fbasename '.tsp']);
tspdata = tspdata(:,1);
if size(tspdata,2)>1
warning('tsp has data in it! Are You sure you want to continue?')
% keyboard
end
nFramesTsp = size(tspdata,1);
tspnew = [tspdata -1*ones(size(tspdata,1),6)];
%readerobj = VideoReade... |
a962c377a91858fa92f57ddf37f79077a3c1213e1aef45bc025320fd46c68efa | MATLAB | 1,331 | 39 | function [] = ea_defaultview(varargin)
% saves and sets default view preferences
% there must be Electrode-Scene figure
%
% ea_defaultview() saves current view as default view
%
% ea_defaultview(v,togglestates) sets view and togglesates
H = findall(0,'type','figure');
resultfig = H(~cellfun(@isempty,strfind({H(:).Name... |
48f7b13ba770c30ad2de90125be6a08de95de6f0a7c6e2b5fc4c263a2e92447f | MATLAB | 1,332 | 54 | function y = nanmean(x,dim)
% FORMAT: Y = NANMEAN(X,DIM)
%
% Average or mean value ignoring NaNs
%
% This function enhances the functionality of NANMEAN as distributed in
% the MATLAB Statistics Toolbox and is meant as a replacement (hence the
% identical name).
%
% NANMEAN(X,DIM) calculates the mean ... |
affa54eb7a9157c2167852b3c9387807163b23db18b8c4bf66f522602c7a0ce5 | MATLAB | 1,332 | 42 | function [linehandles, patchhandles] = errorarea(x,y,l,u)
%ERRORAREA Plot with confidence region.
% ERRORAREA(X,Y,L,U) is similar to ERRORBAR(X,Y,L,U), except that the
% confidence bounds are drawn as a shaded patch above and below the
% plot. ERRORAREA(X,Y,E) and ERRORAREA(Y,E) are similarly allowed and... |
f8fa5d0e74ce426ac886a44bfde28c2c3aaf576a0e2c199851818aa7a38e06c8 | MATLAB | 1,332 | 49 | function outpoints = mni2tal(inpoints)
% MNI2TAL - MNI to Talairach coordinates (best guess)
%
% outpoints = mni2tal(inpoints)
%
% inpoints - Nx3 or 3xN matrix of coordinates
% (N being the number of points)
%
% outpoints - the coordinate matrix with Talairach points
%
% See also, TAL2MNI, MNI2TAL_MATRI... |
273f9dfe09eef30779760f5a8507fa7ed921a8410601b2d733c5212e89af2e16 | MATLAB | 1,333 | 48 | % Expand a multiple-scan NIFTI file into multiple single-scan NIFTI files
%
% Usage: expand_nii_scan(multi_scan_filename, [img_idx], [path_to_save])
%
% NIFTI data format can be found on: http://nifti.nimh.nih.gov
%
% - Jimmy Shen (jimmy@rotman-baycrest.on.ca)
%
function expand_nii_scan(filename, img_idx, newpath)
... |
ef3f97eaaa30ea7298729b2528a167d19c29dd9e6c3242b05f077747da504224 | MATLAB | 1,333 | 47 | function ea_Bmap(varargin)
% creates a regression nifti file + intercept term given a set of images and a
% regressor
% ea_Rmap(fis,regressor,outputname,mask,sk,corrtype) % sk can be 'k','s','sk'
% for smoothing and normalization options. Mask only necessary if
% choosing 'k' option.
re... |
ff775284f4faad8d221008a09db77c111ffa6d1347d181d0bc8265e3a5c410a0 | MATLAB | 1,333 | 45 | % Sparse covariance estimation for Gaussian variables
% Joëlle Skaf - 04/24/08
% (a figure is generated)
%
% Suppose y \in\reals^n is a Gaussian random variable with zero mean and
% covariance matrix R = \Expect(yy^T), with sparse inverse S = R^{-1}
% (S_ij = 0 means that y_i and y_j are conditionally independent).... |
055ae485fc5d74f89f67ed6cc8f3dbd36ee43aa8093b313061241876ed07927b | MATLAB | 1,335 | 56 |
darn=[]
dar=reshape(rr1([1:nimtr*ntr]+noff,:),[nimtr ntr size(rr1,2)]);
for mm=1:4, darn(:,:,mm)=dar(:,:,mm)./(ones(150,1)*squeeze(mean(dar(1:25,:,mm),1))); end;
%figure; plot(dar(:,:,1))
spacing = 1;
figure;
hold on
yshift=0;
wROI=1;
for iii = 1:size(dar,2)
plot(tt,dar(:,iii,wROI)+yshift)
yshift=yshift+spa... |
65c98fa530307fee71bd725ff7daeae62a64b0e4f5e84fe035658e10e6d67f4f | MATLAB | 1,335 | 33 | function [dx, dy] = pbc_dist_LE(dx_old, dy_old, box_L, strain_value)
% PBC_DIST_LE Minimum-image displacement under Lees-Edwards (sheared)
% periodic boundary conditions.
%
% [dx, dy] = PBC_DIST_LE(dx_old, dy_old, box_L, strain_value) applies
% the Lees-Edwards convention: when a displacement wraps across the top
... |
9693ba1518e41e1fca457022c15cb2d3cb1807f34aac5f4bec3f8a37739a9ce6 | MATLAB | 1,335 | 28 | function dbPath=SOFAdbPath(newPath)
% dbPath=SOFAdbPath
%
% dbPath=SOFAdbPath returns the path to the directory containing
% HRTFs for demos and applications. The default path is: this_directory/../HRTFs/SOFA
%
% [...]=SOFAdbPath(Path) sets the path to the directory for further calls
% of SOFAdbPath.
... |
f2f66c2c2672bab0c8ec8dce1c3cd2d5031913e2e5a1c6ea815e9ec0aacb1ba3 | MATLAB | 1,335 | 47 | function [FinalImage, medTime] = j_load_downsample_TiffStack_3(FileTif, n, factor, verbose)
if(nargin<4)
verbose = true;
end
if(nargin<3)
factor = 1;
end
InfoImage=imfinfo(FileTif);
mImage=InfoImage(1).Width;
nImage=InfoImage(1).Height;
if(isinf(n) || n>le... |
fad56bd235017ee7ce92d374370624cc92659d3d21349b2faddbbc8fb15791e3 | MATLAB | 1,335 | 50 | function [relPath] = relativePath(basePath,newPath)
% function [relPath] = relativePath(basePath,newPath)
%
% Returns the relative path from 'basePath' to 'newPath'
% eln 100415
% compute where all the file seperators are in the basepath
bp = fullfile(basePath,'.');
bpDirMrks = ismember(bp,filesep);
bpDirMrks = cumsu... |
2207d8e8d04a9cefca06eeff9e618a3940913343a9c24c981bc3bd0ca3c3e0c7 | MATLAB | 1,337 | 32 | function lambdaGrid = enetLambdaGrid(opts)
% enetLambdaGrid Resolve the Elastic Net lambda path from an options struct.
%
% lambdaGrid = enetLambdaGrid(opts) returns opts.lambdaGrid if present and
% non-empty, otherwise the family default logspace(-3,1,25).
%
% This exists so that the point estimate (ENet_neuroi... |
3894cb6af17eda30189b62d21ea6c7f6a7e54823fb20537aa75467c2d879efe2 | MATLAB | 1,337 | 44 | function [s] = removefields(s, fields)
% REMOVEFIELDS makes a selection of the fields in a structure
%
% Use as
% s = removefields(s, fields);
%
% See also KEEPFIELDS, COPYFIELDS
% Copyright (C) 2014, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.fieldtriptoolbox.org
% for the documentation a... |
689ceac54e845b02d89d9dbf20a4685e53d360b82c99e16c0d1892dea91c15ac | MATLAB | 1,337 | 39 | temIMG = imread("cc_AC_sulcus_large.jpg");
cc_AC_sulcus_large = temIMG(1:5:end, 1:5:end, :);
temIMG = imread("cc_PFC_sulcus_large.jpg");
cc_PFC_sulcus_large = temIMG(1:5:end, 1:5:end, :);
temIMG = imread("cc_AC_sulcus_square.jpg");
cc_AC_sulcus_square = temIMG(1:3:end, 1:3:end, :);
temIMG = imread("cc_PFC_sulcus_squ... |
8eedb9413bcc6194322bb47b31a52f34621d4bbce3d74b9333479beb5cac5d9c | MATLAB | 1,338 | 25 | function ANN_default_settings = ea_get_default_ANN_settings()
% pathway settings
ANN_default_settings.connectome = 'Multi-Tract: M1LowerExDS';
ANN_default_settings.pathway = 'M1_cf_lowerex';
ANN_default_settings.fiberDiameter = 4.0; % in um
ANN_default_settings.axonLength = 15.0; ... |
49722030f8772ea4e97afbcdbac6f747aa79e5e4f9caa4357c42b4fed3da2bc0 | MATLAB | 1,339 | 34 | function [fibidx,peakvals,meanvals,sumvals,peak5vals,binvals] = ea_explorer_efoverlapfiber(vol,img,fibers)
fibers = single(fibers);
if ~isequal(sort(fibers(:,4)),fibers(:,4))
keyboard
end
%% convert fibers to vx-coordinates
fibersorg = fibers;
fibers = vertcat(fibers(:,1:3)',ones(1,size(fibers,1)));
fibers = round(... |
5217b3b14224b429339ea80e79c2f80ed22f3dfb9cad74a054907ca8f0d4f6c7 | MATLAB | 1,339 | 42 | function [betas, stats] = CBIG_fitGLM_3t(subInfoFile, GMICVFile)
% [betas, stats] = CBIG_fitGLM_3t(subInfoFile, GMICVFile)
% What is the subtype order?
% Offset by 1, the RID column
%
% Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
SUB_COL = 1+3;
COR_COL = 1+1;
fprintf... |
a9e72d3cbddbd900a7de820fafb69fd1508569aff184c3ee8febee815ef642b7 | MATLAB | 1,339 | 20 | tmptmptext = strvcat(' EEGLAB 1997-2010 (compiled version)', ...
' ', ...
' ', ...
'The EEGLAB electrophysiological data analysis software is an open source research', ...
'project developped at the Swar... |
2176d8da23b7341e66b2e2a9ec849877e66a0dfb243cd47b7b0d3bb69ef05681 | MATLAB | 1,340 | 24 | % CVX: A system for disciplined convex programming.
% CVX is a modeling framework for building, constructing, and solving
% disciplined convex programs.
%
% cvx_setup - Sets up and tests the cvx distribution.
% cvx_error - Formats text for inclusion in error messages.
% cvx_license - Licen... |
ba789ee1a032abd47c5842b0fa78fa9aca788bd2d85d75c1996ee6fb6dd79dc0 | MATLAB | 1,340 | 53 | function [] = gen_logbf_barplot(logbf, modelnames, outpath)
if nargin > 2
ifSave = true;
else
ifSave = false;
end
% Prepare data
nSubjects = numel(logbf);
for i=1:nSubjects
ytl(i) = strcat("m", num2str(i+1, '%02i'));
end
f = figure('Renderer', 'painters', 'Posit... |
08297401e469e1a5a80d6249436294addce0bd0a85e35c10d391521ca8860fa9 | MATLAB | 1,341 | 54 | function [x,yp_out,xi_mid,yi_mid]=calcRadius3b(proj,mii)
% Usage ... x=calcRadius3b(proj,mii)
if (nargin<2), mii=[]; end;
if (isempty(mii)),
plen=length(proj);
pleni=ceil(0.05*plen);
%mii=[1 pleni+1 plen-pleni plen];
mii=[1 2 plen-1 plen];
mii_std0=std(proj(mii));
if (plen>8),
for mm=3:4,
tmp_mi... |
319c5daa6169056417907224e8e1a26409c39d5535dfb0a87215b5ce15609fd1 | MATLAB | 1,341 | 49 | function CBIG_pMFM_dwell_time_empirical()
% This function is used to compute the dwell time distirbution for empirial
% data
%
% Written by Kong Xiaolu and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
load('../../../part1_pMFM_main/output/step5_STDFCD_results/STD_FCD_empirical_r... |
555bfe5ece1a99c064cdb0c95b55e4602c9d2f04a7c841d2203a33cdd240efca | MATLAB | 1,341 | 43 | % nan_mean() - Average, not considering NaN values
%
% Usage: same as mean()
% Author: Arnaud Delorme, CNL / Salk Institute, 16 Oct 2002
% Copyright (C) 2001 Arnaud Delorme, Salk Institute, arno@salk.edu
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General P... |
b7215a07eb10e946d0e5ae9634734e8f37e2bcc05cdd30ca968d7a5db24dc9b4 | MATLAB | 1,341 | 36 | function data_out = Trinh_loadConditionData(filename,eventtype,eventvalue,prestim,poststim)
%% load and cut condition data
% insert name of the file: filename, e.g., 'MUSICOM_001.vhdr'
% eventtype, e.g., 'Stimulus' or 'Trigger'
% eventvalue, e.g., 'S 1' in cell
% define how much to cut before and after trigger
%... |
b79fa46a91b83b7e42222f1c0835e3361304f42f5aee9b0d93832d52edf9acf5 | MATLAB | 1,341 | 40 | function [tra, presentfiles] = ea_assignpretra(options)
% Stub function for BIDS compatibility
% Returns anatomical files present in the patient directory
directory = [options.root, options.patientname, filesep];
% Check for BIDS preprocessing/anat files
preprocAnatDir = fullfile(directory, 'preprocessing', 'anat');
... |
b863b7672e8f1d636c15ac2a741f6c0a8d9e1400c79dd0c2cffc16bdda9699eb | MATLAB | 1,341 | 47 | function varargout = outselect(index,sub_idx,func,varargin)
%OUTSELECT Select output arguments of a function.
% OUTSELECT(I,FUNCTION,P1,P2,...) returns one or more of the outputs,
% as selected by the integer(s) in vector I, resulting from the
% function call FUNCTION(P1,P2,...). FUNCTION can be a handle or
... |
a02ebaf81c416548448af4d4cb149e5ee7219bbc31b4367efa851af84fa366ec | MATLAB | 1,342 | 48 | function [varsel] = Selfeature(handles, ttlabel, mainfig_pos)
varsel = [];
scrsz = handles.scrsz;
pos = mainfig_pos;
pos(1) = pos(1)+100;
pos(3) = pos(3)-300;
hplot = figure(25); clf('reset')
set(hplot, 'NumberTitle', 'off', ...
'MenuBar', 'none', ...
'ToolBar', 'none', ... ... |
c0eeece724809c6b03180bba4843453aee7b75d24fc26c5d739877c996403746 | MATLAB | 1,342 | 40 | function numSegments = getNumSegmentsPerTrack(tracksFinal)
%GETNUMSEGMENTS gives back the number of segments in each compound track
%
%SYNPOSIS numSegments = getNumSegmentsPerTrack(tracksFinal)
%
%INPUT tracksFinal: Output of trackCloseGapsKalman
%OUTPUT numSegments: Vector of number of segments in each compound track... |
18de3aa037c3466b4a01505ca3a88cf860b67e3b00eafd319115208bd8d2208d | MATLAB | 1,343 | 47 | function [ X,T ] = OUNoise(theta,sigma,duration,dt,save_dt,numsignals)
%[ X,T ] = OUNoise(theta,sigma,duration,dt,save_dt,numsignals)) simulates
%Ornstein-Uhlenbeck noise with standard deviation sigma and characteristic
%frequency theta.
%Initial conditions: random value from normal distribution around 0 with
%std=sigm... |
85f59126fb6e7d00968a64633c4fa693e980e0ea400c7181a9c793071243f803 | MATLAB | 1,343 | 39 | function dFoF = dFoFcalc(rawF,baseIDX,traceDim)
% dFoFcalc output deltaF/F for a vector, matrix, or cell array of raw F.
% dFoF = dFoFcalc(
% rawF, --> raw fluorescence as vector, matrix, or cell array
% baseIDX, --> [first last] indices of rawF to be used for F0 calculation
% trace... |
ad525d16a48304ec63a4364c7dc19cdb566b85ecbb21c4adefa3ee38475f1c93 | MATLAB | 1,343 | 29 | function ea_atlas2conn(atlasFolder, connectomeName)
% Convert atlas that contains fiber tracts into normal dMRI connectome
% Retrieve left side tracts
leftTracts = ea_regexpdir([atlasFolder, filesep, 'lh'], '^(?!\.).*\.mat$', 1);
[~, leftTractNames] = cellfun(@fileparts, leftTracts, 'Uni', 0);
leftTractNames = strcat(... |
1d7158e6dd2d8c996433b6517f83650909cc15f92eb959cd5563dd9a63e7a506 | MATLAB | 1,344 | 42 | %%*************************************************************************
%% ToeplitzApproxSQQ: find the nearest symmetric positive definite Toeplitz
%% matrix to a given symmetric matrix F.
%%
%% max -y0
%% s.t. y0*B + T(y) (S>=) 0
%% [y0; gam.*y] + [0; q./gam] ... |
d64d0814fce23858bb74af13bd5073576d3d0bb3d62f7db250f63731f42dc696 | MATLAB | 1,345 | 57 | %XMLDEMO3 Demonstrate how to convert an XMLtree in a simple structure
%
% Description
% This script demonstrates the use of the xmltree class to
% convert an XMLtree (when possible) in a simple structure.
% This can only be performed when the XML file is simple enough
% (one element cannot have more tha... |
699ee468fe53a20942dbfa64cb87cdc6e155b33e2efdcb2be8397c22d18192d0 | MATLAB | 1,346 | 33 | function plotModulatedROIsCCF(dorsalMaps, allROIs, modField)
% Plots the ROI centroids colored by modulated and unmodulated
% Figure
allenMapSMc(dorsalMaps, [-3.6, 0, -2, 3]) % Creates figure by itself
% Set sizes
% Paper ready figure/axis formatting
panelWidth = 1.699*1.1;
panelHeight = 2.2*1.1; % This is the only w... |
1a6e4a85cf990f6c414a543729a930a563a391f71057644dba09bc6ba99ebafe | MATLAB | 1,347 | 46 | function [v,data,namelist] = Dynamic_read_dir_NIFTI_sparse(sub_dir,filter_str)
if nargin==1
filter_str = '';
end
flag = 0;
[fpath,name,ext] = fileparts(sub_dir);
if strcmp(ext,'.nii')||strcmp(ext,'.img')||strcmp(ext,'.hdr')
if strcmp(ext,'.hdr')
niiname.name = [name,'.img'];
else
niiname.nam... |
55c8f7ee284e69e0fd21deec5694d23487194a04863d4f5e99b943dcf1467f24 | MATLAB | 1,347 | 27 | plugin_find_master_script_directory;
%% SUMMARY
% Load and print summary of study from study_info.json and contrast info
% -------------------------------------------------------------------------
scriptname = which(fullfile('Second_level_analysis_template_scripts', 'core_scripts_to_run_without_modifying', 'b_reload_... |
6504ffdedf0730722a6c8c639e660169f2488a04fe3959cbba9653efb8d2ea6d | MATLAB | 1,347 | 49 | function [A] = clique_graph(n,varargin)
% CLIQUE_GRAPH Generate the clique graph or bipartite clique graph
%
% The clique graph is a graph with as many edges as possible.
%
% A = clique_graph(n) generates a clique with n vertices and returns the
% adjacency matrix A.
%
% A = clique_graph([m n]) generates a bipa... |
132c01903f87434714d8a36ff2df4e9e97465b1330641146b15902555a04c684 | MATLAB | 1,348 | 37 | function [fMRI_CM,gmtc] = ea_createCM_fmri(options)
expfolder=[options.root,options.patientname,filesep,'connectomics',filesep,options.lc.general.parcellation,filesep];
% check if rest_preprocessing has been performed:
[~,restfname]=fileparts(options.prefs.rest);
[~,anatfname]=fileparts(options.prefs.prenii_unnormaliz... |
e8a3b591ef18c843726fc4158ed8d4ab87ad84f6f4c0184b73f219675c1f838e | MATLAB | 1,348 | 44 | function t = toeplitz( c, r )
% Disciplined convex/geometric programming information for TOEPLITZ:
% TOEPLITZ imposes no convexity restrictions on its arguments.
% Instead of using the TOEPLITZ function, however, consider
% creating a matrix variable using the 'toeplitz' keyword; e.g.
% var... |
583fdaf4d9612d658827c5a0d4298e5ce63d911397af136e51c5cb6376179053 | MATLAB | 1,349 | 30 | function [lh_grad_matrix,rh_grad_matrix]=CBIG_gwMRF_gradient_vertices_to_matrix(lh_grad,rh_grad,fsaverage)
%% this function creates two 6xN GradientMatrices from two 1xN GradientVectors
% - Input
% - lh_grad = left hemisphere vector
% - rh_grad = right hemisphere gradient vector
% - fsaverage = t... |
76e09fc3c3cc055e13e7fcc6a6bc5facbf767fa2fc63eaa7c52ce721b50fa475 | MATLAB | 1,349 | 26 | function ea_add_networkmapping(~,~,leadgroup,resultfig)
% small function to open ea_networkmappingexplorer. lead group can be a path to
% either lead group analysis file or saved fiber explorer.
if ismember('M', who('-file',leadgroup)) % Add new network mapping analysis
exp = ea_networkmappingexplorer(leadgroup,re... |
29525b6ebcc7ed4f5879833904dc14d0085a15469be24f0138e44a01724cee14 | MATLAB | 1,350 | 34 | % Local Regression and Likelihood, Figure 6.1.
%
% Derivative (local slope) estimation, for the Old Faithful Geyser Data.
% The 'deriv' argument specifies derivative estimation,
% 'deriv',1 First-order derivative.
% 'deriv',[1 1] Second-order derivative.
% 'deriv',2 For bivariate fits, part... |
50dd746dbdd37bf910b01734ef181b05ddf2cea1db8c434cbde37d53d74d1b25 | MATLAB | 1,350 | 28 | function [azi,ele] = sph2nav(azi,ele)
%SPH2NAV Coordinate Transform
% [azi,ele] = sph2nav(azi,ele) converts spherical coordinates to
% navigational coordinates.
%
% Input:
% azi ... azimuth (0 <= azi < 360)
% ele ... elevation (-90 <= ele <= 90)
%
% Output:
% azi ... azimuth (-180 <... |
6a3ba2eafec57e75d5cc8c7570aa770712e75a31484a4e34f50afa28429a98ec | MATLAB | 1,350 | 44 | function tree = copy(tree,subuid,uid)
% XMLTREE/COPY Copy Method (copy a subtree in another branch)
% FORMAT tree = copy(tree,subuid,uid)
%
% tree - XMLTree object
% subuid - UID of the subtree to copy
% uid - UID of the element where the subtree must be duplicated
%
% Copy a subtree to another branch.
%... |
866f89f4d28010822d5d92c1385d15c635b454e9ba56205c1f0e92ae8d164341 | MATLAB | 1,350 | 39 | function test_spanning_trees
msgid= 'matlab_bgl:test_spanning_trees';
%% mst
% make sure mst('kruskal','root') fails
load('../graphs/clr-24-1.mat');
try
T = mst(A,struct('algname','kruskal','root',5));
error(msgid,'mst(kruskal,root) did not report an error');
catch
end
%% prim_mst
load('../graphs/clr-24-1.m... |
a603b101ede85d13600e8920e7c95547fdbab6fa6809547fc5a751d4ba4e1db9 | MATLAB | 1,350 | 50 | function printFigure(fh,size,type,fileName,fileType,subindex,crop)
% parameters:
% 1: figure handle
% 2: position and size in cm [left, bottom, width, height]
% 3: formatting ('paper','poster','presentation','icon')
% 4: filename
% 5: graphic format as in print, i.e '-dpng', '-depsc'
% 6: panel labels ('lcletter... |
b94818507ae17d35ec5be02d557003c66549dd1db9ed16670f67afb9eda4067e | MATLAB | 1,350 | 44 | % pop_runscript() - Run Matlab script
%
% Usage: >> pop_runscript;
% >> pop_runscript( filename );
%
% Input:
% filename - [string] name of the file.
%
% Author: Arnaud Delorme, SCCN / INC / UCSD, August 2009
% Copyright (C) Arnaud Delorme, August 2009
%
% This program is free software; you can redistribute i... |
131fbe64450431942e6abb4aec73ff865dd0c21827b682acf7e7cf2c767c69ae | MATLAB | 1,351 | 47 | %%***********************************************************
%% lmiexamp1: generate SDP data for the following LMI problem
%%
%% max -eta
%% s.t. B*P + P*B' <= 0
%% -P <= -I
%% P - eta*I <= 0
%% P(1,1) = 1
%%***********************************************************
%% Here is ... |
ad034ef84a70a5572485f40b4baa167bb64bdd1174f6be7c54302f1ced3785ed | MATLAB | 1,351 | 42 | function y = istrue(x)
% ISTRUE ensures that a true/false input argument like "yes", "true"
% or "on" is converted into a boolean
% Copyright (C) 2009-2012, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.fieldtriptoolbox.org
% for the documentation and details.
%
% FieldTrip is free software:... |
084a75e0d6777cc0eaaa3b447f5f616bcc7b0393f635c8b2c60d8d8a87aa8b8a | MATLAB | 1,352 | 38 | % erpregoutfunc() - sub function of erpregout() used to regress
% out the ERP from the data
%
% Usage:
% totdiff = erpregout(fact, data, erp);
%
% Inputs:
% fact - factor
% data - [float] 1-D data (time points).
% erp - [float] 1-D data (time points).
%
% Outputs:
% t... |
3b3bda8f5e6814344834d433795ddc3f0c6df5fd4569fb030f2978dfa0a6c8dd | MATLAB | 1,352 | 37 | function [rid_diagnosis, rid_ICVoverGM, rid_prob, rid_age, rid_sex, rid_edu] = CBIG_get_data(subInfoFile, GMICVFile, K)
% [rid_diagnosis, rid_ICVoverGM, rid_prob, rid_age, rid_sex, rid_edu] = CBIG_get_data(subInfoFile, GMICVFile, K)
% Subject information
%
% Written by CBIG under MIT license: https://github.com/Thomas... |
502eb9c1197ea8a428ccd9f8be1810514c8ccdc6c30a97e61ca2a05429f24072 | MATLAB | 1,352 | 40 | % At startup, matlab will find a file startup.m assumed to be located in directory specified by
% the environmental variable MATLABPATH (see http://www.mathworks.com/help/matlab/ref/startup.html).
%
% Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
if (~isdeployed)
... |
9d7dc94ce180b7bc476ca392adbafb871f16d2a1cd292706759fba57e1071bc7 | MATLAB | 1,353 | 53 | function f = CBIG_plotCmp(A, xlimCmd)
% f = CBIG_plotCmp(A, xlimCmd)
%
% Written by CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
no_comparisons = size(A, 1);
y_max = (no_comparisons-1)*2+1+1;
% Decide figure height
if no_comparisons == 3 % K = 2
dy_fig = 295;
elseif no_com... |
7f90551cedf910616fedae74b12185ade9aa16b2ec3d23bc9aa6bd29cb83869b | MATLAB | 1,354 | 36 | function CB_logmenu(handle, event)
%CB_LOGMENU Callback for UIlogmenu.
%%%%%%%%%%%%%%%%%%%%%%%% Determine toggle state %%%%%%%%%%%%%%%%%%%%%%
userdata=get(handle, 'UserData');
checked = onoff2bool(get(handle,'Checked'));
if (checked), scale = 'linear'; else scale = 'log'; end;
set(handle, 'Checked', bool2o... |
f1cec68adb109f13e455940330fc4259a7a2c8f1fa579fa0eb2f83675a2492f1 | MATLAB | 1,354 | 59 | function ea_3dgauss_from_pointlist(ptlist,fname)
[gauss3d,mat]=d3gauss(ptlist(:,1),ptlist(:,2),ptlist(:,3));
V=ea_synth_nii(ea_niigz(fname),mat,[16,1],gauss3d);
gauss3d=gauss3d/max(gauss3d(:));
gauss3d(gauss3d<0.001)=0;
spm_write_vol(V,gauss3d);
function [P_Gaussian,mat]=d3gauss(var1,var2,var3)
Data=[var1,var2... |
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