sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
b5cef4551410826ab6e7041e8382835bedfcfe0913a703508a551d3ad5392fb3 | MATLAB | 2,556 | 104 | % helpforexe() - Write help files for exe version
%
% Usage:
% histtoexe( mfile, folder)
%
% Inputs:
% mfile - [cell of string] Matlab files with help message
% folder - [string] Output folder
%
% Output:
% text files name help_"mfile".m
%
% Author: Arnaud Delorme, 2006
%
% See also: eeglab()
% Copyright (C)... |
decb408046af26e84fe4222e518d50669791fd469c5623a26d9b20b087db7489 | MATLAB | 2,556 | 100 | %RunBatch - Run a batch job. This should *not* be called directly.
%
% Run a batch job. This function is called automatically by the
% batch timer upon expiration of the required delay.
%
% USAGE
%
% RunBatch(timer,event,b)
%
% timer Matlab timer object
% event Matlab timer event type
% b... |
ec053e0f7436aa448e17b5b5e7828b7cdd108c25ad85e27b8c153ca1a878ebd1 | MATLAB | 2,556 | 85 | function [epochs, P_r, ts] = ThetaEpochs(self, window, window_inc)
% Determines epochs where theta/delta power ratio is above criteria
%
% Returns continuous theta/delta power ratio using instantaneous power from
% Hilbert transform (P_r). moving window average of each instant. power. vector.
% Note that the first wi... |
9b4503c2e99d39474a2dc3bdae4ad67b3a3e1d479c060596a7897b0d610fd653 | MATLAB | 2,558 | 83 | function c = convFft(a,b,shape)
%CONVFFT Convolve two vectors using FFT multiplication
%
% Convolution using traditional overlapping methods can be slow for very
% long signals. A more efficient method is to multiply the FFTs of the
% signals and take the inverse FFT of the result. However, this comes at
% a c... |
7183f04a0dd35701e76e040cd99518265898753d096bd417767ac7db65ea24ad | MATLAB | 2,561 | 88 | function [Ygreen, Yred] = makeStacks5D(folder, pctUpdate)
% This function will make 4-dimensional stacks from 5-dimensional data.
% 5D data: x, y, z, t, c
% Volume imaging time series with two color channels.
if(nargin<2)
pctUpdate = [];
flag = false;
else
flag = true;
end... |
ff374082c9ad6d133d59a7a950949b0ce3813658fd179f0b451e598d62bc5b05 | MATLAB | 2,562 | 88 | function [x,t] = istft(s,nfft,hop,fs)
%ISTFT Calculate the Inverse Short-Time Fourier Transform
%
% X = IOSR.DSP.ISTFT(S) calculates the inverse short-time Fourier
% transform (ISTFT), from the 1024-point one-sided FFTs in each column of
% S, using the overlap-add method. It is assumed that FFTs are calculated... |
6f8e6e6fc4fc8b47edf08ca0a875b8a94e09506eb1da4ba7f5f954b6dd2b4076 | MATLAB | 2,566 | 77 | function varargout = palm_yeojohnson(varargin)
% Find the lambda parameter and compute the Yeo-Johnson transformation.
%
% Usage:
% [Y,L] = palm_yeojohnson(X)
% Y = palm_yeojohnson(X,L)
%
% X : Input data.
% Y : Transformed data.
% L : Lambda parameter.
%
% Reference:
% Yeo IK and Johnson RA. A new family of power... |
fd6582e1669c0c9800a24efe5bacbd2caed8d590ef95a02d8f27a0143b5a6e20 | MATLAB | 2,566 | 78 | addpath (genpath('eeglab2022.1/'));
eeglab
load("dataset_ds005284.mat");
selected_channels = {'C3','C4','CZ','PZ'};
eeg_segments = cell(1, length(data));
for subi=1:length(data)
EEG = data{subi};
EEG = pop_select(EEG, 'channel', selected_channels);
fs = 250;
EEG = pop_resample(EEG, fs);
... |
58faf292cc23998584ea7830bf76beb657b734427cafe9c7d4f71946c416bfbb | MATLAB | 2,569 | 81 | function ea_update_data(varargin)
% update lead data
updurl = 'https://www.lead-dbs.org/release/download.php';
if nargin
if strcmp(varargin{1},'full')
id = 'data_pcloud';
else
id = 'updates_data';
end
else
id = 'updates_data';
end
earoot = ea_getearoot;
if strcmp(id, 'updates_data')
... |
4dc779ed6789c63bda41776b5a43dea151a4fe777608a8449c37ec2e1d1d2a7e | MATLAB | 2,570 | 69 | function dirlist = regexpdir(rootdir, expstr, recursive)
% REGEXPDIR Gives a directory listing based on a regular expression
% REGEXPDIR(ROOTDIR, REGEXP) gives a directory listing of the directory
% ROOTDIR based on the pattern specified by the regular expression
% REGEXP.
%
% REGEXPDIR(ROOTDIR, REGEXP, REC... |
fc93a3f9e777f3d45acafa1fff8c0a5e60cdee032febb0b9354ccc8a631cd592 | MATLAB | 2,576 | 84 | %%**********************************************************
%% cheby0:
%%
%% minimize || p(d) ||_infty
%% p = polynomial of degree <= m such that p(0) = 1.
%%
%% Here d = n-vector
%%----------------------------------------------------------
%% [blk,Avec,C,b,X0,y0,Z0,objval,p] = cheby0(d,m,solve);
%%
%% d ... |
f5169913b877fc544265357a535bfaefd5085b46278ed81b9e32becf656d399c | MATLAB | 2,577 | 74 | %%*********************************************************************
%% sortA: sort columns of At{p} in ascending order according to the
%% number of nonzero elements.
%%
%% [At,C,b,X0,Z0,permA,permZ] = sortA(blk,At,C,b,X0,Z0);
%%
%% SDPT3: version 3.1
%% Copyright (c) 1997 by
%% K.C. Toh, M.J. Todd, R.H. Tut... |
5823b4f8a7d0fdabded250cfae7654e83e88f5d2748a872631a37e3436de5a5f | MATLAB | 2,578 | 36 | % Chapter 8: Geometric problems
%
% separate_pt_poly.m - Section 8.1.1: Separating a point from a polyhedron
% separate_poly_2D.m - Section 8.2.2: Separating polyhedra in 2D
% analytic_center.m - Section 8.5.3: Analytic center of a set of linear inequalities
% svm_1.m ... |
bb7cea2fd17708a0145fe1733527c9617fd3759b75489b57849ed08455cfed59 | MATLAB | 2,578 | 85 |
%% ======================= step 01-00 for disposal all data
% input all the basic data
%% set parameters
% input parameters
FileName_CellType1 = ['CellType_2025PlosB_glasser360_NN.mat'];
FileName_CellType2 = ['CellType_2022Nature_glasser360_NN.mat'];
FileName_CellType3 = ['CellType_2019Nature_glasser360_NN.mat'];
% ... |
1f3a29d772339cf556a9d4535fc0373a772a1c9aca016b6a5432aba113fc41ef | MATLAB | 2,579 | 57 | classdef CBIG_hMRF_unit_test < matlab.unittest.TestCase
% Written by Xiaoxuan Yan and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
methods (Test)
function test_example(testCase)
% create output folder
CBIG_CODE_DIR = getenv('CBIG_CODE_DIR');
load(fullfi... |
f9caf965ba1bef5b818a6b0c09050cac1d6c409d016282f497ac41065db861f4 | MATLAB | 2,582 | 58 | %
%
% Format: The prep_6 script extracts signature responses and saves them.
% These fields contain data tables:
% DAT.SIGNATURES.(signaturename).(data scaling).(similarity metric).by_condition
% DAT.SIGNATURES.(signaturename).(data scaling).(similarity metric).contrasts
%
% signaturenames is any of those from load_ima... |
289fc5ede00a5e7389b5afafc19a430f41aa92bd0da489c2f5c588bb17305fd8 | MATLAB | 2,583 | 54 | function CBIG_MMLDA_behavior_to_zscore_create_refpara(behavior_bl, ind_CN_bl_behavior, regressor_bl_behavior, zscore_method, output)
% CBIG_MMLDA_behavior_to_zscore_create_refpara(behavior_bl, ind_CN_bl_behavior, regressor_bl_behavior, zscore_method, output)
%
% Create a mat file which contains reference parameters for... |
28c7d56175138b2486b84f88c8722ea2ad49ed6c113b82cfe2ab4d65e50d3bba | MATLAB | 2,583 | 87 | % icaact() - compute ICA activation waveforms = weights*sphere*(data-meandata)
%
% Usage: >> [activations] = icaact(data,weights,datamean);
%
% Inputs:
% data = input data (chans,frames)
% weights = unmixing matrix (runica() weights*sphere)
% datamean = 0 or mean(data') (default 0);
%
% Note: If da... |
606aa56cc18503c0f30e787aec430e37f2264464f5c174fd82f6bab68d884fca | MATLAB | 2,583 | 82 | function percent = parfor_progress(N)
%PARFOR_PROGRESS Progress monitor (progress bar) that works with parfor.
% PARFOR_PROGRESS works by creating a file called parfor_progress.txt in
% your working directory, and then keeping track of the parfor loop's
% progress within that file. This workaround is necessary be... |
268b2a44e3085cc7f69307304d1ba37d029b9b48229662c8d6cd041693331275 | MATLAB | 2,584 | 75 | % FDLA and FMMC solutions for an 8-node, 13-edge graph
% S. Boyd, et. al., "Convex Optimization of Graph Laplacian Eigenvalues"
% ICM'06 talk examples (www.stanford.edu/~boyd/cvx_opt_graph_lapl_eigs.html)
% Written for CVX by Almir Mutapcic 08/29/06
% (figures are generated)
%
% In this example we consider a graph desc... |
c7c9d9eb80a452e05e84367e2bc7743fd450558d2d3da7feeb296ee8836fd2d3 | MATLAB | 2,584 | 94 | function [node,elem]=binsurface(img,nface)
%
% [node,elem]=binsurface(img,nface)
%
% fast isosurface extraction from 3D binary images
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% img: a 3D binary image
% nface: nface=3 or ignored - for triangular faces,
% nface=4 - square faces
% ... |
3e0446be7c7164f1ab29a8949525375e336a7f758fda91ce577f31b9c540ed90 | MATLAB | 2,585 | 71 | function colors=ea_color_wes(set, colnum)
% source: http://opencolor.tools/palettes/wesanderson/
% similar or same palettes found in R here: https://github.com/karthik/wesanderson
% different sets here https://prafter.com/color/
sets={'lifeaquatic','budapest','moonrisekingdom','royaltenenbaums','fantasticmrfox','darjee... |
cf69717b3b461775cb74b9396bd2a60109500118ac0a51f9efa1dada34a81b4d | MATLAB | 2,585 | 113 | function fit = mrelnet(x,is_sparse,irs,pcs,y,weights,offset,parm,nobs,nvars,...
jd,vp,cl,ne,nx,nlam,flmin,ulam,thresh,isd,jsd,intr,maxit,family)
nr = size(y, 2);
wym = wtmean(y, weights);
nulldev = sum(wtmean(bsxfun(@minus,y,wym).^2,weights)*sum(weights));
if isempty(offset)
offset = y * 0;
is_offset = f... |
38931b88e3e976b07eb3ca14ce935ebbb47a6060326db7c7bcb63d9d9252a6a6 | MATLAB | 2,586 | 63 | function [waveformDuration_peakTrough, halfWidth, peakTroughRatio, firstPeakTroughRatio,...
nPeaks, nTroughs, isSomatic] = computeWaveformProp(templateWaveforms, ...
thisUnit, maxChannel, param, channelPositions)
% all waveform metrics based on template and not mean raw waveform for now
% get waveform, wavef... |
8940502b972ba74f5e426beab1e815cae0b83428a83ee58ec61f4d223bbc8954 | MATLAB | 2,586 | 66 | function Sp_vect = myPLS_permutations(X,Y,U,grouping,pls_opts)
% This function computed permutation testing over singular values obtained
% with PLS. Rows (subjects) of Y are permuted in each iteration.
%
% Inputs:
% - X : N x M matrix, N is #subjects, M is #imaging variables,
% imaging data (... |
b526b45a180bbab830e958be25abf65b9152883ea32861138deb8ae33b5f8853 | MATLAB | 2,586 | 89 | function cvx_optval = sum_largest( x, k, dim )
%SUM_LARGEST Sum of the largest k values of a vector.
% For a real vector X and an integer k between 1 and length(X) inclusive,
% y = SUM_LARGEST(X,k) is the sum of the k largest elements of X; e.g.,
% temp = sort( x )
% y = sum( temp( 1 : k ) )
% If k=1... |
7302e9daac9bd4b5ab66e092ef48b7ec89a7f660a44fbefe691dce1f43e03076 | MATLAB | 2,587 | 99 | function res = dynamicgustmodel
% Model Parameters
% generate two stable wind directions
% initialWD = 0;
% finalWD = 0;
%
% wd = [initialWD*ones(7500,1);finalWD*ones(7500,1)];
% dirs = randi([-90 90],1,6);
% dirs = [50 -80 35 75 -20];
% dirs = [50 -65 25 -30 45];
dirs = [0 0 0 0 0];
wd = [zeros(1800,... |
15220b016da7afbe18bc2e1f5ceac236805d227ad71a1049d7870dc64a263c00 | MATLAB | 2,590 | 79 | function res = plugin_urlsize(urlChar,method,params)
%URLREAD Returns the contents of a URL as a string.
% S = URLREAD('URL') reads the content at a URL into a string, S. If the
% server returns binary data, the string will contain garbage.
%
% S = URLREAD('URL','method',PARAMS) passes information to the server ... |
e10c55efa5c3be8266ce19e89cc2eeddedf2a7d307dcf118ebeee998b570def5 | MATLAB | 2,590 | 86 | function status = IsInZone(positions,zone)
%IsInZone - Test when the animal is in a given zone.
%
% Test when the animal is in a given zone of the experimental setup (typically the
% firing field of a place cell).
%
% USAGE
%
% status = IsInZone(positions,zone)
%
% positions position samples (normalized be... |
fa6518b17b5e6a1240eff63fd2acd35d6fb085f1643b91dec9936a353a9af4ed | MATLAB | 2,590 | 84 | function [node,elem]=meshgrid5(varargin)
%
% [node,elem]=meshgrid5(v1,v2,v3,...)
%
% mesh an ND rectangular lattice by splitting
% each hypercube into 5 tetrahedra
%
% author: Qianqian Fang, <q.fang at neu.edu>
% inspired by John D'Errico
% URL: http://www.mathworks.com/matlabcentral/newsreader/view_thread/10... |
5ce2ffafdf33279cfd999dc4a5c7556c65cab9ea20ce91eb575a6060683f2cc3 | MATLAB | 2,591 | 73 | % pop_averef() - Convert an EEG dataset to average reference.
% This function is obsolete. See pop_reref() instead.
%
% Usage:
% >> EEGOUT = pop_averef( EEG );
%
% Author: Arnaud Delorme, CNL / Salk Institute, 22 March 2002
%
% See also: eeglab(), reref(), averef()
% Copyright (C) 22 March 2002 Ar... |
40cf10a37225ab26ad5a3fbe6d5066c09d2bbf2b08ea3918e8c0dc00028489d9 | MATLAB | 2,593 | 65 | function ClincFreq_CalCentNum(outdirCent,OutCentdir,SetUpPara,Para,AtlasTempU)
IndirCent = [outdirCent,'CentNum',filesep];
[V,D,namelist] = Dynamic_read_dir_NIFTI_sparse(IndirCent);
D(isnan(D)) = 0;
D(isinf(D)) = 0;
% D = D>0;
% Dvol = sum(D)';
% Dvole = sum(D,2);
% IgV = Para.IgP;
% indexs = find(Dvole>=(... |
71415cf38011f0b3ac03bdfe4c17d583575518c3b085b5ae694b5a5c5ad163e7 | MATLAB | 2,594 | 89 | %% Spatial specificity: Correlations between NPS contrasts and global gray, white, CSF
if isfield(DAT, 'gray_white_csf_contrasts') || isempty(DAT.gray_white_csf_contrasts)
printhdr('Correlations between NPS and global gray, white, CSF');
disp('Systematic non-zero values indicate global signal contaminatio... |
f335ba8c19640152a59ea7da1a95b10685aa8283044eacdf5c2934cf1c84bc69 | MATLAB | 2,595 | 60 | function handles = call_autoBAP_filt(handles)
minF = 0;
if ~isempty(handles.spine_filt)
spID = handles.spine_title;
if isempty(handles.spine_trace_BAPremoval) ...
|| isempty(handles.spine_BAPremoval_coef) ...
|| isempty(handles.spine_BAP_current)
trace_BAPremoval = []; BAPremoval... |
e766f5570aa82b82e0adee7723723935f6deccb4f292c409b61e9424ddd55070 | MATLAB | 2,596 | 62 | function Y_ds = downsample_data(Y,direction,tsub,ssub,nrm)
% downsampling for 2d or 3d imaging data (already loaded in memory)
% INPUTS
% Y: input dataset in 2D+T or 3D+T format
% direction: direction of downsampling: 'space','time','spacetime'
% tsub: degree of downsampling in time
% s... |
5bd95abcccb0de49754525d5cf7745cceeebe4826e8659962cb68be37edacf50 | MATLAB | 2,599 | 44 | function outinfo = cifti_diminfo_dense_get_volume_structure_info(diminfo, structure, cropped)
%function outinfo = cifti_diminfo_dense_get_volume_structure_info(diminfo, structure, cropped)
% Get information on how to map cifti indices from one volume structure to voxels.
% The volsform1 field is adjuste... |
ab723db3481a1a0549c6e283f130998fc2e4bd503026ba1f7fad084d721bfc10 | MATLAB | 2,599 | 106 | function x=editMask1(x,im)
% Usage ... x=editMask1(x,im)
%
% same as editmask but will let you edit labeled images
% by selection
wait_flag=0;
if exist('im'),
if iscell(im),
im_overlay4(im{1},x,256);
elseif size(im,3)>1,
im_overlay4(im(:,:,1),x,256);
else,
im_overlay4(im,x,256);
end... |
4c1356fcd5b705e68a289a686157644456d13f7fa853a4cb94deb594bdbcb3f3 | MATLAB | 2,601 | 71 | function str = ea_gencode_substruct(subs, name)
% GENCODE_SUBSTRUCT String representation of subscript structure.
% Generate MATLAB code equivalent to subscript structure subs. See help
% on SUBSTRUCT, SUBSASGN and SUBSREF for details how subscript structures
% are used.
%
% str = gencode_substruct(subs, name)
% Inpu... |
6c7d3ab4f9ffa8e62daf85e7bd0706c5c12efbdff3778d338a31c11a1432d28b | MATLAB | 2,601 | 88 | % gauss3d() - generate a 3-dimensional gaussian matrix
%
% Usage:
% >> [ gaussmatrix ] = gauss2d( nX, nY, nZ);
% >> [ gaussmatrix ] = gauss2d( nX, nY, nZ, ...
% sigmaX, sigmaY, sigmaZ, ...
% centerX, centerY, centerZ, mask)
%
% Example:
% >> gauss3d(3,3,3)... |
d147d435ce4fb5be485276cc07e1e965ff2d9068f67a901a377d219bc27b4a90 | MATLAB | 2,601 | 82 | function currentfluor=rmmotion(currentfluor,currentred, thresholdstd,framerate)
%should this do something different if it's shaped differently? Like if it
%is taken in as a cell?
axall=[];
figteststd=figure('Position',[1 1 1920 237]); hold on;
redstd=[];
directions=fieldnames(currentred);
for p=1:5
%allred=[cu... |
294d6796bedee358a95565dccd5ee8f6dd9c3bb911df762d011711df2945ac53 | MATLAB | 2,603 | 107 | function sim = cpc_type2_SDT_sim(d, noise, c, Nratings, Ntrials)
% Type 2 SDT simulation with variable noise
% sim = type2_SDT_sim(d, noise, c, c1, c2, Ntrials)
%
% INPUTS
% d - type 1 dprime
% noise - standard deviation of noise to be added to type 1 internal
% response for type 2 judgment. If noise is a 1 x 2 vector ... |
567ce4cb64786157d6e8f8ee967bd8f3e304d522d95b2facd780d9741e52d86f | MATLAB | 2,604 | 63 | % CircStat Toolbox
% Toolbox for circular statistics with Matlab
%
% Descriptive Statistics.
% circ_mean - Mean direction of a sample of circular data
% circ_median - Median direction of a sample of circular data
% circ_r - Resultant vector length
% circ_var - Circular variance
% c... |
6824bf2db0928b6d7306bdd6f17985f3d18128601686da08faa1575a046a48b7 | MATLAB | 2,604 | 86 | function [ h ] = lineWithGaps( varargin )
%lineWithGaps Plots a single low-level line with gaps between columns in
%the XYZ data
%
% lineWithGaps(X,Y,[Z], parameters ...)
%
% Parameters:
% -----------
% Handle - Line handle to reuse instead of creating a new line
%
% Delimeter - Delimeter to use between columns. Defau... |
e777014ab1a1ab7736ae9c7b9ac1f6105289bf2bd51f398a6454229065925efe | MATLAB | 2,604 | 84 | function []= fill_legend(obj,title_text,legend_text,legend_type,legend_color,legend_marker,legend_linestyle,legend_line_size,legend_point_size)
legend_y_step=1;
legend_y_additional_step=0.5;
obj.legend_text_handles=[obj.legend_text_handles...
text(1,obj.legend_y,title_text,...
'FontWeight','bold',...
'Int... |
3b861b718c0033b141ceedac811ff6202875f1121f4874e75f56a6800c467fe8 | MATLAB | 2,605 | 83 | function [h] = headcoordinates(nas, lpa, rpa, flag);
% HEADCOORDINATES returns the homogenous coordinate transformation matrix
% that converts the specified fiducials in any coordinate system (e.g. MRI)
% into the rotated and translated headccordinate system.
%
% [h] = headcoordinates(nas, lpa, rpa, flag) or
% [h] = h... |
eed0575023bdb63b7020eb6beb65785125ca6fcedcd34a3f5d1e2d47e63fc053 | MATLAB | 2,605 | 59 | clear;
clc;
close all;
addpath(genpath('../functions/'));
CBIG_plotSetup;
%% Assemble rid_prob and rid_ICVOverGM
r = dir('../../lda/postprocess/188blAD/k3/r*');
%----------------- bl
subInfo = csvread('../../subInfo/rid_sex_mDoB_yDoB_mExam_yExam_ageExam_dx_icv_bl.csv');
rid_gmVol_icv = csvread('../../vbm_810bl/gmVo... |
adde499d9f9fc583bc215c7a972049d4c89c3c8bb8d2a1df84f2940e93b46729 | MATLAB | 2,606 | 82 | function currentfluor=rmmotion_cell(currentfluor,currentred, thresholdstd,framerate)
%should this do something different if it's shaped differently? Like if it
%is taken in as a cell?
axall=[];
figteststd=figure('Position',[1 1 1920 237]); hold on;
redstd=[];
directions=fieldnames(currentred);
for p=1:5
%allre... |
fa632acbe7c598032fba9d659da9c60110cbfe9d41c355d3965f22286f815ebc | MATLAB | 2,606 | 163 |
%
% all_shortest_paths
%
load ../graphs/clr-26-1.mat
floyd_warshall_all_sp(A);
%
% astar_search
%
load ../graphs/bgl_cities.mat
goal = 11; % Binghamton
start = 9; % Buffalo
% Use the euclidean distance to the goal as the heuristic
h = @(u) norm(xy(u,:) - xy(goal,:));
% Setup a routine to stop when we find the goal
e... |
161c943eb499d8a120ccead1691a87881bb73f3a00fa9b4c50d91fbace0f5743 | MATLAB | 2,608 | 83 | function array = display_matrix(A, resize_factor, num_column, figure_on)
% This function display the columns of A in an image where each rectangle
% of the image represents the column of A
% A: may represent the connections between two populations;
% resizeFactor: the factor for a higher resolution
% numColumns: # of... |
2949a6914c99f7db5d44df1ea3bde1bca66859273cafd3eaa2e3084349917082 | MATLAB | 2,608 | 79 | function [x, y, bodyline, sqr] = FindFly(chunk, sqrsize)
%FINDFLY
%
% Usage:
% [x, y, bodyline, sqr] = FindFly(chunk, sqrsize)
%
% This function takes in a single image matrix (chunk) and finds the fly.
% First, it finds the brightest pixel in the image, then grabs a square
% of size 2*sqrsize pixels aro... |
d6a204b128f2db1521f8e0310d33ec832a25f4557f1aba6132ac7a68979a4ca7 | MATLAB | 2,608 | 83 | %MAT_INTO_HDR The old versions of SPM (any version before SPM5) store
% an affine matrix of the SPM Reoriented image into a matlab file
% (.mat extension). The file name of this SPM matlab file is the
% same as the SPM Reoriented image file (.img/.hdr extension).
%
% This program will convert the ANALYZE 7.5 SPM Reor... |
ec70b414588f2e469dbd5b45adbf0d119a548aeac8706ce7065c7cce12a87858 | MATLAB | 2,608 | 73 | function ea_checkOSSDBSInstallv2(env)
% Check conda installation
if ~ea_conda.is_installed
ea_cprintf('*Comments', 'Initializing conda...\n');
ea_conda.install;
ea_cprintf('*Comments', 'Done...\n');
end
if ~exist('env', 'var')
env = ea_conda_env('OSS-DBSv2');
end
% Install/Update OSS-DBS v2 conda env... |
245524b4e35ef3bc17d574efbe0ac392a2ff65b7c6bd8aa4030d05215fbda447 | MATLAB | 2,609 | 79 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%% CPC METACOGNITION TUTORIAL 2019: PLOT TYPE2ROC %%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Function to plot type2 ROC curve from observed ± estimated data fit
%%%%%%%%%%%%%%%%%%%%... |
49db9de9ded6ee4b057e20a6f7d46ed04b72a399cbed6f824ce79c3372ad779e | MATLAB | 2,609 | 64 | function cifti = cifti_struct_dense_replace_volume_all_data(cifti, data, cropped, dimension)
%function cifti = cifti_struct_dense_replace_volume_all_data(cifti, newdata, cropped, dimension)
% Replace the data in all cifti volume structures, taking a 4D array as input.
% For a single-map cifti, the input... |
15f32f28e739eb5682d887511289ac9c465e77c07dae387258cbbe2a20855f82 | MATLAB | 2,610 | 54 | %% sleepDanalyzer montage.
% Montage scripts provide a conveinient way to control how the data looks
% when sleep scoring.
% chanList. A list of channel names and (optionally) channel coordinates.
% This should be an EEGLAB chanlocs struct. Alternatively you can read in a
% .txt file using the readlocs function (EE... |
c1d85597a08aa7de7450f826b784716b204ad131a773e3aa8860d15a3cca48aa | MATLAB | 2,610 | 87 | function CBIG_ASDf_plotCmp(A, xlimCmd, isSex, output_name)
% CBIG_ASDf_plotCmp(A, xlimCmd, isSex, output_name)
%
% This function plots GLM results (estimated difference between factors and
% standard error). If output_name is specified, the plot will be saved.
%
% Input:
% - A:
% Outputs from hypothesis ... |
37f18840e503dda8d4142c3ac366f7d7065d2b6272da7ece80143d3e8d6ab850 | MATLAB | 2,611 | 51 | plugin_find_master_script_directory;
%% CHECK DEPENDENCIES AND SET DEFAULT VARIABLES
% Load and print summary of study from study_info.json and contrast info
% -------------------------------------------------------------------------
scriptname = which(fullfile(masterscriptdir, 'a2_second_level_toolbox_check_dependen... |
4baf8da76da5a35aedd908ade432abcf421af2abf90d8c284de844079f4fb3f5 | MATLAB | 2,611 | 91 | function swave=smoothwavelet(wave,dt,period,dj,scale)
% Smoothing as in the appendix of Torrence and Webster "Inter decadal changes in the ENSO-Monsoon System" 1998
%
% used in wavelet coherence calculations
%
%
% Only applicable for the Morlet wavelet.
%
% (C) Aslak Grinsted 2002-2005
%
% --------------... |
6f6c5148f6205f2854f50e12eaefa4e7a4f4d062c1dee79e54bb81faeb8141c6 | MATLAB | 2,612 | 70 | function d=edit_distance_weighted(s,t,weight_delete,weight_insert,weight_replace)
% Calculate a weighted string distance. If the weights are 1,1,1, then
% the calculated distance is equal to the Levenshtein distance.
%
% @author B. Schauerte <schauerte@ieee.org>
% @date 2010
% Copyright 2010 B. Schauerte... |
9e8b56993134aa40978c2e813293d271fec4593d9f09648475ae34117609899f | MATLAB | 2,612 | 100 | function [adfreq, n, ts, fn, d] = nex_cont(filename, varname)
% nex_cont(filename, varname): Read continuous variable from a .nex file
%
% [adfreq, n, ts, fn, d] = nex_cont(filename, varname)
%
% INPUT:
% filename - if empty string, will use File Open dialog
% varname - variable name
%
% continuo... |
ac9fe5b48062013f9db711f6a99db54706effe5cd2aa42c7733832fd675379c1 | MATLAB | 2,612 | 66 | % written by Yiyuan Han, Essex BCI-NE Lab, 12/03/2020
% use coherences to measure the cross-frequency coupling
% Input:
% - data: The input data for analysis, which is channel-by-time-by-trial
% - bin: the length of each bin for calculating the CFC across bins in the
% unit of Hz.
% - band1: The range of the firs... |
000378e958bd67d4e97a1c4b96e9754f49b234cc11dc20cc9b533568f8a8f52e | MATLAB | 2,613 | 82 | % Example script that extracts pre-transcription apical areas for NB vs
% non-NB analysis shown in Figure 3
% Inputs are MasterMatAreaABSOLUTE, MasterMatLengthBondABSOLUTE and
% IntensitiesPerFrameMatrix .mats obtained from GetSizeAndBondTables.m
close all
clear all
movie_number = '3';
window_number = '1';
if str... |
59e2b3dd9f8f95ca54b362db62b07b77e0fe368ffd4a70e08c22096bc64cf166 | MATLAB | 2,615 | 86 | %% Add all folders to path
addpath(genpath(pwd));
%% Load raw data
data = data_IFNAGRKO_raw();
k = 1000; % scaling factor
alpha = 0.01; % filtering parameter
%% Process all NSC counts and fractions
proc = process_NSC_frac_data(data, k, alpha);
%% Define scenarios for comparison
... |
0d896ad7143d881785eb982f5205767f61273ac74c5b1448a3ea002c7c01050a | MATLAB | 2,616 | 120 | function [p,t,df,slope1,slope2,sem1,sem2] = CompareSlopes(x1,y1,x2,y2)
%CompareSlopes - Perform linear regression y = ax on two groups and compare slopes.
%
% USAGE
%
% % To compare two slopes:
% [p,t,df,slope1,slope2,sem1,sem2] = CompareSlopes(x1,y1,x2,y2)
%
% % To compare a slope to a theoretical value:
% ... |
a0d798bb15987d40612f40af91c1d85adad71d0ae2b7d9dd6c4054b11068bb14 | MATLAB | 2,617 | 96 | function varargout = ConfineTspOutput(fbasename,outputfilename,varargin)
% USAGE:
% ConfineTspOutput(fbasename,varargin)
%
% Keep only LED points detected within the user-specified polygon (ie home
% cage).
% >Assumes you will either enter inputs to specify shape of polygon, or that
% .mpg file is in same directo... |
f32ac619b86573edc10f957085197355ac76be06b28271c53113f27424cc8c85 | MATLAB | 2,617 | 97 | function [DF]= sim_computeGeneralizedLV_Derivatives(t,F,struct)
% This file is a part of the MDSINE program.
%
% MDSINE: Microbial Dynamical Systems INference Engine
% Infers dynamical systems models from microbiome time-series datasets, and
% predicts biologically relevant behaviors of the ecosystems.
% Copyright (C) ... |
febbd05218ce5d47418c70622e472376736f9272aa2edd10efb54053a51f25a9 | MATLAB | 2,617 | 69 | function progressBar(progressFraction, updateEvery, infoString)
%PROGRESSBAR Improved progress indicator.
% PROGRESSBAR(FRACTION, UPDATEEVERY, INFOSTRING) modifies Matlab's
% waitbar functionality to allow the indicator to decrease, automate
% creation/deletion and restrict updates so the indicator is only
... |
71697afa973223f3705a876f39c4959ce71d190e2cfd0ff518f053953f494892 | MATLAB | 2,618 | 67 | function tp = maxstep(dx,x,auxx,K)
% tp = maxstep(dx,x,auxx,K)
%
% MAXSTEP Computes maximal step length to the boundary of the cone K.
%
% ********** INTERNAL FUNCTION OF SEDUMI **********
%
% See also sedumi
% This file is part of SeDuMi 1.1 by Imre Polik and Oleksandr Romanko
% Copyright (C) 2005 McMaster Universi... |
a4215592ee8ab9293269a4eadb5e2e1cde4c7810ccb4cdd1e5023a86f0a10964 | MATLAB | 2,618 | 94 | function edgenb=edgeneighbors(t,opt)
%
% edgenb=edgeneighbors(t,opt)
%
% to find neighboring triangular elements in a triangule surface
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% t: a triangular surface element list, 3 columns of integers
% opt: if opt='general', return the edge neighbors for a... |
ef357fd52c8dfc8c8a2e5183b3acb64d7041b847429d4903d154ad698cb4eb52 | MATLAB | 2,619 | 89 | function varargout = dtype(varargin)
% FORMAT varargout = dtype(varargin)
% For getting the value
% dat = dtype(obj)
%
% For setting the value
% obj = dtype(obj,dat)
%__________________________________________________________________________
% Copyright (C) 2005-2013 Wellcome Trust Centre for Neuroimaging
%
% $Id: dty... |
7372a20922fb3537411ff9d30cd76ee3e50894ff7df1c33e3bbc6bc0815b744b | MATLAB | 2,620 | 131 | function [idx,dist]=rangesearch(c,r,X,mode)
% RANGESEARCH Range Search to find all points within a range.
% [index,distance]=rangesearch(c,r,X,mode) returns all points,x of X which
% are in the range of ||x-c||<r.
% Inputs:
% c: 1 x d the query vector
% r: scalar defines the range
% X: n x d array of all searc... |
743b0eff3ef2dd8326de2f1de3334a7e78abc48ab8b9edd00e80e3bfa95833b7 | MATLAB | 2,620 | 85 | %% Add all folders to path
addpath(genpath(pwd));
%% Load raw data
data = data_WT_raw();
k = 1000; % scaling factor
alpha = 0.01; % filtering parameter
%% Process all NSC counts and fractions
proc = process_NSC_frac_data(data, k, alpha);
%% Define scenarios for comparison
scenar... |
767466b33cfb7e1d8e64a54d11c1e5dd94fcac5dfcdad5eb73500f0aba0802a0 | MATLAB | 2,621 | 129 | f1 = create_figure('tsplot');
% x predictor, y time, z data
tlen = 5;
% Bottom
h1 = drawbox(0, 1, 0, tlen, 'k');
% Top
h2 = drawbox(0, 1, 0, tlen, 'k');
set(h2, 'Zdata', [1 1 1 1], 'FaceColor', 'k', 'FaceAlpha', 0)
% Back vertical
h3 = fill3([0 0 0 0], [0 0 tlen tlen], [0 1 1 0], 'g');
set(h3, 'FaceColor', [.9 .9 1... |
e2dad78da0822d395611f05b88021fed776049c2ac59e28d3275d9cd5ed94c5b | MATLAB | 2,621 | 99 | function b = InitBatch(bfile)
%InitBatch - Initialize a new batch job.
%
% USAGE
%
% b = InitBatch(bfile)
%
% bfile batch file listing the parameters for each iteration
%
% SEE
%
% See also StartBatch, ShowBatch
%
% Copyright (C) 2007-2013 by Michaël Zugaro
%
% This program is free software; you c... |
f0268ccdbc0f4b9f510f990f865d085c74ca27bb6305b88c6c3e7849352d07ee | MATLAB | 2,622 | 78 | % High-Low Synchrony Heatmap Analysis
clear; % Clear workspace variables
% Load dataset 'HLsync.mat' containing matrices 'gaba' and 'nongaba'
load('HLsync.mat');
% --- Process gaba matrix ---
for i = 1 : length(gaba(1,:)) % Loop through each column (cell) in gaba
% Count how many entries in rows 4 to 7 are... |
03567a2729db98384ee14ec9777d126d3a20224ea34cb511b506860827acd565 | MATLAB | 2,623 | 60 | function handles = call_autoBAP(handles)
minF = 0;
if ~isempty(handles.spine_dff)
spID = handles.spine_title;
if isempty(handles.spine_trace_BAPremoval) ...
|| isempty(handles.spine_BAPremoval_coef) ...
|| isempty(handles.spine_BAP_current)
trace_BAPremoval = []; BAPremoval_coef ... |
ac02fa64ad473f6585e6c776a4ca1471c2524caaa1855866964e2918918dd418 | MATLAB | 2,625 | 71 | function database = DBCreate(database)
%DBCreate - Create database.
%
% Create database with figure and variable tables. Use this function
% if you have admin rights to the database server. Otherwise ask
% the DBA to create an empty database with the appropriate access
% rights, and then use <a href="matlab:help DBCre... |
37b30bee8bf0a587e33b24eed221cc0b88f93dddeb5c537f12ebaf7e751bd8cd | MATLAB | 2,626 | 101 | clc
clear all
close all
set(0,'defaultfigurecolor',[1 1 1]);% set figure background color
if ~contains(path, '/Users/guofanhua/Desktop/gfh/tools/MatlabTools/BrainSpace-latest/matlab')
addpath(genpath('/Users/guofanhua/Desktop/gfh/tools/MatlabTools/BrainSpace-latest/matlab'));
end
%% ======================= step 1 ... |
200a605d1e4b4d48757172c612172778a3c94048a6352412611e76e242c116f1 | MATLAB | 2,627 | 86 | %% Regular Spiking (RS) Izhikevich Model Neuron
% Produces simulated data for a simple model of a regular spiking neuron
% from Izhikevich 2007, page 274.
%
% Syntax: [mv,spkCt,spkLoc] = simpleModel_RS(vInput,T,tau,PLOT,nzInput)
%
% Input:
% vInput (1 by number of time steps double vector) - the current input to
% ... |
28350c0e4daa6db212406b150e69f1dfe4f7b19b3db1501deb67e9f442b50835 | MATLAB | 2,628 | 80 | % averef() - convert common-reference EEG data to average reference
% Note that this old function is not being used in EEGLAB. The
% function used by EEGLAB is reref().
%
% Usage:
% >> data = averef(data);
% >> [data_out W_out S_out meandata] = averef(data,W);
%
% Inputs:
% data - 2D data ma... |
659aa8b2a4dff7101e46cfc992c7ccdd391af5774a501c0b0898be4a5bb77735 | MATLAB | 2,628 | 87 | function [v, smoothwin] = prep_filt(handles)
v = 0;
smoothwin = handles.defaultPara.Denoise.movingaverage;
% smoothwin = 5;
mainfig_pos = get(handles.mainfigure, 'Position');
scrsz = handles.scrsz;
pos = mainfig_pos;
pos(1) = pos(1)+100;
pos(3) = 300;
pos(4) = 300;
hplot... |
e53552cdab7d152a09c63b135f61610d35e17cb52350c91885fe9392c01c761d | MATLAB | 2,628 | 56 | function [coords,trajvector,trajectory,tramat]=ea_reconstruct(options,side,lnii)
% This function is the heart of Lead-DBS, reconstructing the electrode
% lead trajectory for one side (left/right) of the MR-data. It reads two MR
% images from a folder called 'patientname' and iteratively reconstructs a
% line in 3D-spac... |
438d4058e15a4b3f6b14a1a91bd58e26226b00aebc8babcdd18e87d19ebbfdb6 | MATLAB | 2,629 | 102 | function obj = Empty( varargin )
%uix.Empty Create an empty space
%
% obj = uix.Empty() creates an empty space that can be used to add gaps
% between elements in layouts.
%
% obj = uix.Empty(param,value,...) also sets one or more property
% values.
%
% See the <a href="matlab:doc uix.Empty">documentation</a>... |
9d6a8d58594abdec952e575aea59b81c57a7fcfd1d31400a31e1a16bf3ee6f4e | MATLAB | 2,629 | 58 | function Lsd = sdfactor(L,Lden, dense,DAt, d,v,y, At,c,K,R,y0,pars) %#ok
% [Lsd,Rscl] = sdfactor(L,Lden, dense,DAt, d,v,y, At,K,R,y0,pars)
%
% SDFACTOR Factor self-dual embedding
%
% ******************** INTERNAL FUNCTION OF SEDUMI ********************
%
% See also sedumi
% This file is part of SeDuMi 1.1 by Imre Pol... |
8902abc92e96fced891059e8e80d20cd1cf7a076db45bc41c04aadc759d8a282 | MATLAB | 2,630 | 62 | % Contact ythomas@csail.mit.edu or msabuncu@csail.mit.edu for bugs or questions
%
%=========================================================================
%
% Copyright (c) 2008 Thomas Yeo and Mert Sabuncu
% All rights reserved.
%
%Redistribution and use in source and binary forms, with or without
%modification, a... |
bc758ed1161fbe4a613840d34db450ee8849ae9ad2d47d03c63b59a93cec4b5f | MATLAB | 2,630 | 76 | % pop_saveh() - save the EEGLAB session command history stored in ALLCOM
% or in the 'history' field of the current dataset
%
% Usage:
% >> pop_saveh( ALLCOM, filename, filepath);
% >> pop_saveh( EEG.history, filename, filepath);
%
% Inputs:
% ALLCOM - cell array of strings containing the EEGLA... |
f591843f097e3da84cbe523dc1ddc93f674ee99b83d46a6876d51980cb183c92 | MATLAB | 2,631 | 59 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%% CPC METACOGNITION TUTORIAL 2019: PLOT CONFIDENCE %%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Function to plot confidence scores from simulated and fit data
%%%%%%%%%%%%%%%%%%%%%%%%%... |
c2ac3cf15c7f07f7b2b38dd35ee939ada265bf3642b0b5f6d3547fe954b799df | MATLAB | 2,633 | 97 | % SOFA API - test script
% Test some of the SOFA API functionality
% Copyright (C) 2012-2013 Acoustics Research Institute - Austrian Academy of Sciences
% Licensed under the EUPL, Version 1.1 or – as soon they will be approved by the European Commission - subsequent versions of the EUPL (the "License")
% You may ... |
04dc5d7008dc93a6cae4095e4e9b9e97d1600efa6b734443713448a0882c11f8 | MATLAB | 2,636 | 87 | % script for interpolating 78-sample data to 129-sample data
% using linear interpolation
x = linspace(0,30,78);
xq = linspace(0,30,115);
for i = 1:length(flydata)
for n = 1:size(flydata(i).fluordata,1)
y = flydata(i).fluordata(n,:);
yq1 = interp1(x,y,xq);
flydata(i).fluordata_i(n,... |
23cf7eadaf0e1e8f37f08d5f1972a3337f47e106c2ab81321cba36dc2b689ea0 | MATLAB | 2,636 | 92 | function SaveEachChannel(animal,shank,data_dir)
%Inputs: animal name, shank (1-8), and data_dir (directory containing raw
%intan files with 1 minute chunks of data for all channels
%Output: Matfiles with continuous raw data for each channel in the given
%animal's analysis folder. Numbered 1-512 according to int... |
bdac3d708f277c9ef6445865222cd459fa4354ded76d6a9b4b7e9f421b20cb01 | MATLAB | 2,636 | 97 | function facenb=faceneighbors(t,opt)
%
% facenb=faceneighbors(t,opt)
%
% to find 4 face-neighboring elements of a tetrahedron
%
% author: Qianqian Fang, <q.fang at neu.edu>
%
% input:
% t: tetrahedron element list, 4 columns of integers
% opt: if opt='surface', return boundary triangle list
% (should ... |
08f2847e323eeef8c277c9007051010672be051ad4dc2062855c5abe90e13be3 | MATLAB | 2,637 | 75 | function d=edit_distance_damerau_keylist(s,t)
% Calculate the Damerau-Levenshtein edit distance for cell arrays of (string)
% keys, e.g.
% edit_distance_damerau_keylist({'the','quick','brown','fox'},{'the','lazy','dog'})
%
% @author B. Schauerte <schauerte@ieee.org>
% @date 2010
% Copyright 2010 B. ... |
7fbf7746ca924597cebf094d45bd3abd1a8c4bed3c3753fd20f909c3a1c75aa1 | MATLAB | 2,637 | 52 | % Contact ythomas@csail.mit.edu or msabuncu@csail.mit.edu for bugs or questions
%
%=========================================================================
%
% Copyright (c) 2008 Thomas Yeo and Mert Sabuncu
% All rights reserved.
%
%Redistribution and use in source and binary forms, with or without
%modification, a... |
55d6f0b69ea28a6ce58534e576689c2a6a68b0e239d18a849be09d48487f060e | MATLAB | 2,639 | 69 | function showclust(spikes, useassigns, show)
% SHOWCLUST temporary utility to show clusters
% SHOWCLUST(SPIKES, [USEASSIGNS], [SHOW]);
if (nargin < 2)
useassigns = spikes.hierarchy.assigns;
end
if (nargin < 3)
show = unique(useassigns);
end
show = reshape(show, 1, []);
smallWindow = 0.01;
tmin = (size... |
d1c8ea4e42d76ebbcda498f9de232b6d38d3443fe81088e3dec06451fdb4f58d | MATLAB | 2,639 | 77 | %%*********************************************************************
%% sortA: sort columns of At{p} in ascending order according to the
%% number of nonzero elements.
%%
%% [At,C,b,X0,Z0,permA,permZ] = sortA(blk,At,C,b,X0,Z0);
%%
%% SDPT3: version 3.1
%% Copyright (c) 1997 by
%% K.C. Toh, M.J. Todd, R.H. Tut... |
95107592a344fbd4a3dbbe5bc9bbb451656c698b7f16a34fe8c1dfbfc44c0164 | MATLAB | 2,640 | 64 | %% function GibbsSamplerLDACOL
%%
% Runs the Gibbs sampler for the LDA-COL (Collocation) model.
%
% |[ WP,DP,WC,C,Z ] =
% GibbsSamplerLDACOL( WS , DS , SI , WW , T , N , ALPHA ,
% BETA , GAMMA0, GAMMA1 , DELTA , SEED , OUTPUT
% );|
%
%%
% will run t... |
da15231c29bc628fc89320a5b80c4f0b9eaa6220ee7d2798f09c8334847cdb8b | MATLAB | 2,641 | 68 | clear;
%% load all modules
%setenv('TZ','America/New_York')
%addpath(genpath(pwd))
%addpath(genpath('/gpfs/data/basulab/SR/Scripts/MATLAB/Phoenix')) %path to CNMF
%addpath(genpath('/gpfs/data/basulab/SR/Scripts/MATLAB/Phoenix/CNMF')) %path to CNMF
%addpath(genpath('/gpfs/data/basulab/SR/Scripts/MATLAB/cvx'))
%% load f... |
4ca86e65c72acb415e43cdec683a408c7f29a62420fc479c2e76002dc73daf0e | MATLAB | 2,642 | 77 | % shortread() - Read matrix from short file.
%
% Usage:
% >> A = shortread(filename,size,'format',offset)
%
% Inputs:
% filename - Read matrix a from specified file while assuming four byte
% short integers.
% size - The vector SIZE determine the number of short elements to be
% read... |
b28d5f14c91ba40c179dacac1678ff86874a6303ca8ec6351c9cb0d76d5aac64 | MATLAB | 2,642 | 100 | function b = ParseBatch(bfile)
%ParseBatch - Parse batch file.
%
% USAGE
%
% b = ParseBatch(bfile)
%
% bfile batch file listing the parameters for each iteration
%
% SEE
%
% See also StartBatch, ShowBatch, InitBatch.
%
% Copyright (C) 2007-2013 by Michaël Zugaro
%
% This program is free software; ... |
02a4795e551c9647fe692b005a0c349134c4c31920a374b1995daa35d7a2da83 | MATLAB | 2,643 | 70 | function handles = Call_loadmovie(loadmovieflag, I1, Mem_max, w, f_wait, handles)
tic
if loadmovieflag
if handles.datatype ~=3
%%%%% load movie in .tiff format%%%%%%%%%%%%
imageinfo = handles.imageinfo;
grad = handles.movieinputgrad;
fext = handles.fext;
mov = zeros([size(I1... |
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