sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
af5d8a21858f42808c9bcc17012b77bcc2fd6ab3b071dbd4a05f13f410470541 | Python | 5 | 1 | None
|
47dd3672e7d4b9de0cb35fdb9e62675b54841e5ac2be41e6ebade27b2f9d3b2f | Python | 10 | 1 | # Parsers
|
ecd8e82407ded536cdf148d515cbab569ed9932a34477b3ae5a209bf60c4494d | Python | 13 | 1 | # GOEA tools
|
a7518d885a43ab099a816ed6d45525125256e5e4a3425d221c756b4cdaebe0f6 | Python | 15 | 1 | # GEOA results
|
3582c97f822c67bda14af9e56f5d9b6b8efc3064b59425e62233986b43239a8f | Python | 16 | 1 | # Will add later |
8b0f428878fd7d66bee8432bf5cfa549654bf76a53b9d4e279ab608fb0abc499 | Python | 16 | 1 | version = '0.5'
|
af9073298e085dae66f56713ec82ee898d554f403e31345b352929c245d026ba | Python | 18 | 1 | makePredictions.py |
18b74c1ac9b9fc29c04f2875f40b76d0799bd4cb1766f3f136f83bd1b1d80a19 | Python | 19 | 1 | from .base import * |
7c95cfe79c8a8c8be8b57f1f5b53a4bc005140fdcdef9ff890ab1aa3d3e2913a | Python | 19 | 1 | """data package"""
|
1119a63b1cfff6652422e71c35bcd46b963a8152cb543772738702c5b08251b6 | Python | 20 | 1 | from .base import *
|
2307e1706bbdf12ee9a66a65491fcb62f8be33bfff780ce824268cbbd1ea1c95 | Python | 20 | 1 | from .util import *
|
0816378ec0bef470a6ede67a08a0feb182c27a3a8e275a5858f40ce0b1885dc2 | Python | 22 | 1 | __version__ = '0.6.0'
|
1d5c745c927d3981560413c10941586fc366e370a13e0f4664b87f764c61f6a2 | Python | 22 | 1 | __version__ = '2.0.1'
|
2c6550c83b1689f7400a8eeacedc1bf115961ddb3513bb90f99a83f12023cb0e | Python | 22 | 1 | __version__ = "1.1.0"
|
5b37f94f73410df850a139e19d13474a502c1345cca9b7255c6f8cf3555ab3bd | Python | 22 | 1 | __version__ = "0.1.4"
|
8f9be0fd76125d088a5db2c9f9cfb553cc3da70cdf4f23f568adffd821477337 | Python | 22 | 1 | # Intentionally empty
|
91447944015cec709e8aa7655f7e9d64e1e4508e7023a57fe3746911c0fc6fed | Python | 22 | 1 | __version__ = "0.1.0"
|
9c40b097eb8e0e242d51737b5045449020136fa4ae4eb4c1718f6eab2ff203f4 | Python | 22 | 1 | """DGR subpackage."""
|
8418da615aedb37a098c769eaaee28c48baa7798640997ee15d3d7e4b50226b1 | Python | 23 | 1 | # GPAD Extension field
|
d682cbdb4c8b07518bf486c58990fc391783aa20a916bfb27ad211eb1d5c3642 | Python | 23 | 1 | #!/usr/bin/env python3
|
ee0a7a88b877130e13bd30cccffb8d3b77acffa2b19b1579a786d28548bd655e | Python | 23 | 1 | __version__ = 'v0.6.4'
|
0aa98e8276f959a8e6befc97489405dcf1a37fcf52060ea37f5d107c8593d577 | Python | 24 | 1 | __version__ = '__0.1__'
|
11968c0e88cc9f94ae8dad5753bbeb72b9e5cccb5c396b5cea9a9f5485513cff | Python | 24 | 1 | from .models import Evo2 |
8594fb49819c56b69d4d7c24d1d608dd90b3f34167d70f1e4606497a339f0b5f | Python | 24 | 1 | from .ernie_rna import * |
8a1f904921d1fcf525b13409c590571336144bff7875ed043013cc1e5fdfe2cc | Python | 24 | 1 | """GUI view package."""
|
8b084a9f378124b2b1a51563bf3c22444eb7ff33692017da28b2136ae56987ed | Python | 24 | 1 | # -*- coding: utf-8 -*-
|
a447d52cf020fe88b2107713d3898b21f2a017737e61e05d79d5d2286a016e65 | Python | 24 | 1 | # Code for testing CLIs
|
e5885a44e2fbdaba819fb9df48cba633a0ddffff8e89569168d58cb88e17ae26 | Python | 24 | 2 | """Training Scripts"""
|
6390a941ecc100246efa1d58c84e9f64e6fb8d9328afabf2f90dfb1d8e6e9c05 | Python | 25 | 2 | def test_all():
pass
|
377a065b507fbb923530da0522199e399586ea673be3f97ea11e837330ed77e1 | Python | 26 | 1 | """Semantic Similarity"""
|
d0b610e0cd1eb9fa82630c24d8fb00ed8d2d82ae13f7b7eb8d67971cdca16842 | Python | 26 | 1 | from .base import predify
|
52c0b70d4ccab9c72afde3974d353f54bd2b9e9b3150f9925128fecf63e229e6 | Python | 27 | 1 | """MRI experiment code."""
|
ec6ba59ac98f8b144da8c69850f12037c73f60f27f1344142f381b7297b463e0 | Python | 28 | 1 | # Package to support GO DAG
|
f0f6bc38a78af01b60d99a69ed5bdb84ce8a4a92cc979ce633bc59d04e6e7435 | Python | 28 | 1 | from .cell_sampling import * |
03895e7c0624bcbda3c63b1ec8324f3b9701e1c948f819f09c5543853d7af8af | Python | 29 | 1 | from .xprint import log_print |
7f20d87c74e8bd9d3f1e632a18aa133f1f6e09de2e726df8721a2aa159ef1572 | Python | 29 | 1 | """Behavioral experiment."""
|
b7d667ac392213b50fe169c329a5684b8ec54ab78b79e5b2fe36a2593daf2c55 | Python | 29 | 1 | from .gene_tokenizer import * |
e5b552bb7c44462af4ac1da5883e0fab6c2762901cc55912dfb4f1f8ee961164 | Python | 29 | 1 | from .pretrained import CaLM
|
fc4e1cc5e5b6238e4b5c5a0093c69ea0555e3709e0e429bb0be2ef550f56b651 | Python | 29 | 1 | from .species import Species
|
dff8c48c65b5a2574af040b4ca5b8d11f0ae3a003a27bc04b856d20609d6f1ca | Python | 30 | 1 | from .gene_tokenizer import *
|
9a9426d275171b92e79cb2a38d1da122f7be4e5785d1249e5a37bd72a2de5e2a | Python | 31 | 1 | # Package for subset of GO-DAG
|
b5691c815b3058192f8aeda5c851f08d8ea0ca494b8dc5a07fe75de415fbb402 | Python | 31 | 1 | """Shared Qt UI components."""
|
2f900bb3de0211c717e6dbbdafd1fe7709849e41157280aea4406ca360258a2e | Python | 32 | 1 | class emptyObject(object): pass
|
48a95d6325b92a90980c349c8890eed09167c895e22ec917b8b59a26e46a2cad | Python | 33 | 1 | from .label import label_domains
|
6b0cdd3e99141c22071f64c23a24084f04f900ef010206bf1c1e5d99ea189eb9 | Python | 33 | 3 | import os
__version__ = "1.0.4"
|
78b7e7dd68996c64cc589d6d65d15bb2348d8ae97f6e4a1cf8e403f7aa842478 | Python | 33 | 1 | """Tests for RAG-GNN package."""
|
8e3d549c98f218dc1f1d608c79ade544565dffa9b9b033e55da61dfc8617f9fe | Python | 33 | 1 | # Command-line interface modules
|
d04d2dee7a9c19ab52951881ba1a16ab4dc62a9e41f28aeb6b65eea80bcc2235 | Python | 33 | 1 | """Tests for pylossless.dash."""
|
ddd60a1df996b2b744c45953165711e5afe2711f5f0249f4e98875e1342411df | Python | 33 | 3 | from .server import main
main()
|
e5ee180e6fa888545609f733ad27ab760d781922e6897f6238732530d253423f | Python | 34 | 1 | """PhyloGPN inference support."""
|
01620c2e4a5f503c506ffbbaa3cff4ceedca5df46d04bb0c71ed9caee0b8ae82 | Python | 35 | 1 | from . import embedding, cancergpt
|
19150993fac2ac8168d5d15c24e4fd412bd9727445ecc52b819950256ba0e513 | Python | 35 | 1 | from .data_reader import DataReader |
1d14739a4ece1968a76b76245843481520c2a3e15190908ab0c968a83ea5650b | Python | 35 | 1 | """Termwise semantic similarity"""
|
3c0e0bbd4be70ba686a6bcd2f5924849660104b059647ba468ef6d95848340f5 | Python | 35 | 1 | from .ernie_rna import RNATwoDModel |
f8e12f80062c1ac1c6423c432b72234a63b928342af56ecb29e8176bf1994cb7 | Python | 35 | 1 | from .model import SwinTransformer
|
218113cf6dcdf768e521448fa8c45a1b74b6d5aa1ac06ae1d8d85f14f3c020f4 | Python | 36 | 1 | from .snapshot import make_snapshot
|
4166577bff1bfc1b4d8466129e5352563f2767aa43f61b945d8108d85687811d | Python | 36 | 1 | """Initialize annotation readers"""
|
93e0db97f95bead7fa342124a15ec81632020908a567297ac664a5d4a9be1ef0 | Python | 36 | 1 | """Shared GUI utilities package."""
|
12752a3b91f7464d684cc8e09f8308749ac791324e21be28abd39f49cf79980e | Python | 37 | 1 | from .art_of_tsne import art_of_tsne
|
1b3bfe238d995430e4481cb0446374b0bcc4338270fc60fffd8d0d552dfe3148 | Python | 37 | 2 | """Telemetry alignment Qt views."""
|
3f470f19fb9d699606b95b74a10a60199df051c60dc8282d64146fc8333915c9 | Python | 39 | 1 | """Telemetry alignment I/O helpers."""
|
aa7a46d9cd6f792a4d34f19105bf0e6743a6439da72b1ada60fdcf1b2ad7caff | Python | 39 | 2 | """Raw photometry feature package."""
|
793fb683bdfd054079e4d8f19178853845512621cb91c3b13a372074bd7ced72 | Python | 41 | 1 | # For plotting a sub-section of a GO DAG
|
6e69feee4e95f129e85ec21da8f214419e56cc54fd25bda6f50517fd2ad53389 | Python | 42 | 2 | """Feature packages for NeuroSyncApp."""
|
6375dc4c3f7a5329c3f91e11d93874c26fc51d1af6d5017156a3cc9fcf9c7504 | Python | 43 | 2 | """Telemetry alignment export helpers."""
|
661b703a68cbca395cd3baf66b8037f7eddb7c3b6ea7c276a28a3ad0228ed878 | Python | 43 | 2 | from .util import *
from .spa_util import * |
4d1341de304b2e6fa2cc884b90d16b92f1b72563bb2d80ad1d33dfee8f898880 | Python | 44 | 2 | """Behaviour alignment feature package."""
|
80f1b29aee0765d53cd6d0503a9642d26ede66b7773e82ebf582b6751913bf82 | Python | 44 | 1 | """Qt views for raw-photometry analysis."""
|
9531d8418c6583c8f2bb2f79dd00f552783aadd7afed3c9d729e5e984b937df6 | Python | 44 | 2 | """Telemetry alignment feature package."""
|
fdc334f278a265904743e5f4514c564ee70710147ac2e6b52c1827448de91258 | Python | 44 | 3 | #!/usr/bin/env python3
__version__ = "0.2"
|
10ec11112fa6bc527a08985ce72fb2469b89c52d020b01a76edb7033f2af8589 | Python | 45 | 1 | """Models for the compositionality study."""
|
1a964b00c6939f34cc3c1e4557f6c535b63d966c57ee99eeafc0a8978dba8e16 | Python | 45 | 3 | from ._model import SOLO
__all__ = ["SOLO"]
|
11819c685ee2706dfb02bd771ffc78297aa9695534a54b4de200c6402c8c9fdb | Python | 46 | 3 | from .moosez import moose
__all__ = ['moose'] |
23e0051631b113f7aa929a25f0a982acadbe50379e20fb0c6031454fff37e120 | Python | 46 | 2 | """Telemetry alignment business services."""
|
465f3005e638699b70df93b1c64abb58bc1547d635ff86b1a6430e729b86685c | Python | 46 | 1 | from .sample_data import download_sample_data
|
ef10c851398b49832c8ee0a8b63e4d67d29418ac6d3f2258e67784768ef576b9 | Python | 46 | 1 | # Directory for grouper functions and classes
|
b60f90d82cb559a0aa8a34e39f2c50095ac7c0e10e93796f6f59597ab1d49f2f | Python | 47 | 2 | """Application entrypoints and navigation."""
|
229fe5389dd4fe9a6e75e3d7a96bc7f940daf47939bdd39b71ef0028645def96 | Python | 48 | 1 | from .ernie_rna import RNATwoDMaskedLMCriterion
|
d8ed42fbcaa1b1467be9ef6f30b4a4f4c1d65f76e3fdbf5791945d469fefb6da | Python | 48 | 1 | from . import criterions, models, tasks # noqa
|
fa8f08c563ace7c5498704742c2fcc3cdc2e7fb58eb203c82e311ef7dc85ebc0 | Python | 48 | 1 | from .utils_docker import * # noqa: F401, F403
|
58b73f6f239e5a64600bce951126799e1345ce5e555b7b1958afdc8b112c9692 | Python | 50 | 2 | """Views for the behaviour alignment feature."""
|
6d4ea1f9d2df10fcab7ad97ca6ba128d2968e4d5fd8d0f348fd98bcd460ad6f6 | Python | 50 | 2 | """Version information"""
__version__ = "1.0.1"
|
92ed2fa6ac3b11df972f18863ab04be0a834d9032ee6d7663b2c5c3262733c57 | Python | 50 | 2 | """Version information"""
__version__ = "1.0.0"
|
9e4ad178c181777994f30368bca6c2245814f3d0d471e124a8f2fdbf70e4a25c | Python | 50 | 1 | # Package for creating reports for subset GO-DAGs
|
ab9dc65eccb732fd40ed837dd1d925e26d0b2c65ece8df2b65127ef6c68f4dc1 | Python | 50 | 4 | from __future__ import annotations
name = "one"
|
dc5c884166dde0ca091fd4be12bf3f4739107d54a0a2298ab3ed16e45991fb60 | Python | 50 | 2 | from .image import Image
from .table import Table
|
45837392c615d2c0f190c66a15dfb9e547fdb24584fe4532eb80094645542e45 | Python | 51 | 3 | """enigmatoolbox version"""
__version__ = '2.0.3'
|
909c5f17bda758e2c688905cfc7d35dee4305c500805b042cd49d0b7a02e7556 | Python | 51 | 1 | """Hydra cfg validation and generic assertions."""
|
dc6c242c9f8ad94075c379954e9ae27826f7102f210f19624601b051c35f10e8 | Python | 51 | 2 | """Persistence helpers shared across features."""
|
2d0a77a057417efb12a8ede68d353d996636de04a77d5b903df7dac0cb9b3d97 | Python | 53 | 2 | __version__ = "2.1.0"
__author__ = "chenjiandongx"
|
5cab7690c3ce1c7449aec6eab26327b4a3d30c78b4c185d2749a096a5f254bc8 | Python | 53 | 2 | """Services for the behaviour alignment feature."""
|
df12baf609b2fe50a41cb9def005994c291aa595f9f89c74fa41f469fa788b3e | Python | 54 | 2 | """Exporters for the behaviour alignment feature."""
|
0ac76bd9e0fe1cd9fc1f5b8863426e80d95900dbffbe3d4dacee39fe0a50b54c | Python | 55 | 2 | from . import test_algorithms
from . import test_split
|
35d6197ebd419f870b3d6e11538ab28220f6f8f3550fe20952c1f5ef8d82fd7f | Python | 55 | 3 | from .hf import HartreeFock
__all__ = ["HartreeFock"]
|
3cdc747e61b16e073873d7f5ccb4f7c872d921c5355f2615049de09f279233ee | Python | 55 | 2 | from .gears import GEARS
from .pertdata import PertData |
576c5f1c3f67121ea91acc2304c3957d0cce54fe8ef554933b9729f94a3be154 | Python | 55 | 1 | """I/O helpers for the behaviour alignment feature."""
|
62fb7deb30e84e65701cbaaaa79291fe3c4a20c901d9ac29fa0faa058519f1d3 | Python | 55 | 1 | """Experiment files for the compositionality study."""
|
8da410b1ab68170575952079545e56bc53f36e6f015b9dc2aec3dd14a446868b | Python | 55 | 3 | from ._model import POISSONVI
__all__ = ["POISSONVI"]
|
e1c141da58a220e5cf9743f9797c31a032c71c010db4339e6483cb4ef93c0f03 | Python | 55 | 3 | from .tabulate import tabulate
__all__ = ["tabulate"]
|
8bb7fe863f8e6093f89eadc245c68ad46da10f86dc228dfde2f3d1b129996c71 | Python | 56 | 3 | # MIDSID package initialization
__version__ = "1.0.0" |
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