sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
165f811c01b1064370313dce042afba3806ee28aaa20d7257a8f78b84b6da13d | C/C++ | 163 | 9 | #ifndef __setjmp_h__
#define __setjmp_h__
typedef long jmp_buf[20];
void longjmp(jmp_buf jmpb, int retval);
int setjmp(jmp_buf jmpb);
#endif /* __setjmp_h__ */
|
bfafe065b1c890e186de22ae20f0f4cd6af3cc4b6c00a0139a1be22d965d60ef | C/C++ | 168 | 13 | # ifndef _WAVE_H_
# define _WAVE_H_
# define P_Wave 0
# define SV_Wave 1
# define SH_Wave 2
typedef struct {
int type;
double slowness;
} Wave;
# endif
|
b2b6692145b11c7c2774db106078c97575a47d18e80c7783c68566475325ebb4 | C/C++ | 187 | 5 | // This file is only provided for compatibility and may be removed in future
// versions. Use fmt/base.h if you don't need fmt::format and fmt/format.h
// otherwise.
#include "format.h"
|
96ab058fdc033a42da75091c424c72726cb20e9724d6aacafe0eeba748a93033 | C/C++ | 220 | 12 | #ifndef LINUX_COMIPLER_H_
#define LINUX_COMIPLER_H_
#ifndef __always_inline
# define __always_inline inline
#endif
#ifndef noinline
# define noinline __attribute__((__noinline__))
#endif
#endif // LINUX_COMIPLER_H_
|
f83209e3fe00e04a071190e26a599f27d616222a8d94088edea01c9aa4caa930 | C/C++ | 226 | 15 |
#ifndef TIME_STUB_H
#define TIME_STUB_H
#include <winsock.h> //For timeval defn
struct timezone {
int tz_minuteswest;
int tz_dsttime;
};
int gettimeofday(struct timeval *tv, struct timezone *tz);
#endif |
d2e21b36558d0697364ca5ab05459f2526208a6595224eaba4244b9b8fa58786 | C/C++ | 234 | 11 | /**
* Copyright 2022-2024, XGBoost Contributors
*/
#ifndef XGBOOST_TESTS_CPP_FILESYSTEM_H
#define XGBOOST_TESTS_CPP_FILESYSTEM_H
#include <xgboost/windefs.h>
#include "dmlc/filesystem.h"
#endif // XGBOOST_TESTS_CPP_FILESYSTEM_H
|
cd9ef99b5b99d1dfae723e82a7f722204f67e2d5ce5b18bd8843ca86fa050510 | C/C++ | 245 | 13 | #ifndef LAMBDA_CALC_H
#define LAMBDA_CALC_H
#include <vector>
double calculate_lambda(
const double** raw_mat_b,
const int alpha_size,
std::vector<double>& final_p,
std::vector<double>& final_q,
double eps = 1e-12
);
#endif |
c8e12cbafa6593a98fc4d1a82019d94cb0767444e72edf81901a0c014e85987e | C/C++ | 259 | 8 | /* assert.h */
#undef assert
#ifdef NDEBUG
#define assert(p) ((void)0)
#else
#define assert(p) ((p) ? (void)0 : (void) _assertfail("Assertion failed: ",#p, __FILE__, __LINE__ ))
int _assertfail(char *__msg, char *__cond, char *__file, int __line);
#endif
|
e54640df694d96234fc1ea2c4151de9585da835f9f0e36922c0f05496405561d | C/C++ | 262 | 10 | #ifndef _SIZE_T_DEFINED
typedef unsigned long long size_t;
#define _SIZE_T_DEFINED
#endif
void * _alloca(size_t size);
void * calloc(size_t num, size_t size);
void free(void *memblock);
void * malloc(size_t size);
void * realloc(void *memblock, size_t size);
|
264aeacf9ca6a70ee41d018b665e358b4168842f5a41a5b88358e037a4322c78 | C/C++ | 264 | 19 | #import <Metal/Metal.h>
#import <MetalKit/MetalKit.h>
#import "Renderer.h"
#if TARGET_OS_IPHONE
#import <UIKit/UIKit.h>
@interface ViewController : UIViewController
@end
#else
#import <Cocoa/Cocoa.h>
@interface ViewController : NSViewController
@end
#endif
|
eabe9a4224ae6f35f2d9821fa19f160769903121444b509f0508db1263695185 | C/C++ | 274 | 8 | #ifndef DEFINE_GUID
#error initguid: must include objbase.h first.
#endif
#undef DEFINE_GUID
#define DEFINE_GUID(name, l, w1, w2, b1, b2, b3, b4, b5, b6, b7, b8) \
EXTERN_C const GUID name \
= { l, w1, w2, { b1, b2, b3, b4, b5, b6, b7, b8 } }
|
92e295ac04e5e46070bd7d320822ad1d997bb27536d45de1e6ff21a695ef34be | C/C++ | 284 | 8 | /* minimal set of defines required to generate zstd.res from zstd.rc */
#define VS_VERSION_INFO 1
#define VS_FFI_FILEFLAGSMASK 0x0000003FL
#define VOS_NT_WINDOWS32 0x00040004L
#define VFT_DLL 0x00000002L
#define VFT2_UNKNOWN 0x00000000L
|
d5e683944ef8b90118818620e3f60541a15fdaf26f66074ca14b9b21fc0c4ecb | C/C++ | 288 | 11 | /**
* Copyright 2019-2023 by XGBoost contributors
*/
#ifndef XGBOOST_VERSION_CONFIG_H_
#define XGBOOST_VERSION_CONFIG_H_
#define XGBOOST_VER_MAJOR 3 /* NOLINT */
#define XGBOOST_VER_MINOR 1 /* NOLINT */
#define XGBOOST_VER_PATCH 0 /* NOLINT */
#endif // XGBOOST_VERSION_CONFIG_H_
|
533e974897822d892e52d510907eb81b4b7f9eda8cf83d6611899028b6e60cdf | C/C++ | 297 | 18 | #import <TargetConditionals.h>
#if TARGET_OS_IPHONE
#import <UIKit/UIKit.h>
@interface AppDelegate : UIResponder <UIApplicationDelegate>
@property (strong, nonatomic) UIWindow *window;
@end
#else
#import <Cocoa/Cocoa.h>
@interface AppDelegate : NSObject <NSApplicationDelegate>
@end
#endif
|
dbc11635d7b1ba1887adf40df5b83d634e9c3ab0bee34510c71528bb4d73602a | C/C++ | 302 | 15 | //
// Generated file. Do not edit.
//
// clang-format off
#ifndef GENERATED_PLUGIN_REGISTRANT_
#define GENERATED_PLUGIN_REGISTRANT_
#include <flutter/plugin_registry.h>
// Registers Flutter plugins.
void RegisterPlugins(flutter::PluginRegistry* registry);
#endif // GENERATED_PLUGIN_REGISTRANT_
|
00f93bb5b1faefdede8f6065df327522900fb0b8efee86bacf424fd947ed14bb | C/C++ | 303 | 15 | //
// Generated file. Do not edit.
//
// clang-format off
#ifndef GENERATED_PLUGIN_REGISTRANT_
#define GENERATED_PLUGIN_REGISTRANT_
#include <flutter_linux/flutter_linux.h>
// Registers Flutter plugins.
void fl_register_plugins(FlPluginRegistry* registry);
#endif // GENERATED_PLUGIN_REGISTRANT_
|
0cb20586eec2cdfa853eb56b1430d4cb18dc5e7b1e1c58dfc6fb454a12cd1efc | C/C++ | 308 | 19 | #ifndef _LCC_TIMEB
#define _LCC_TIMEB
#ifndef _TIME_T_DEFINED
typedef long time_t;
#define _TIME_T_DEFINED
#endif
#define timeb _timeb
/* current definition */
struct timeb {
time_t time;
unsigned short millitm;
short timezone;
short dstflag;
};
void _ftime(struct _timeb *);
#endif /* _LCC_TIMEB */
|
0cb61c06b50f955a217557f6ea8af531c9ccd33936680d9f58d856b83cef46ef | C/C++ | 312 | 15 | #ifndef MIIC_CONFIDENCE_CUT_H_
#define MIIC_CONFIDENCE_CUT_H_
#include "environment.h"
namespace miic {
namespace reconstruction {
void setConfidence(structure::Environment&);
void confidenceCut(structure::Environment&);
} // namespace reconstruction
} // namespace miic
#endif // MIIC_CONFIDENCE_CUT_H_
|
a2761fdbd4c8925741ddea678ee8398de930207e447666bc6a76d5f72684c04f | C/C++ | 314 | 8 | #pragma once
// Including SDKDDKVer.h defines the highest available Windows platform.
// If you wish to build your application for a previous Windows platform, include WinSDKVer.h and
// set the _WIN32_WINNT macro to the platform you wish to support before including SDKDDKVer.h.
#include <SDKDDKVer.h>
|
01c50c58126738469c32b59a2e12c74ec6c9d9ed3801d99afc20a2489a7674f0 | C/C++ | 321 | 5 | /*---------------------------------------------------------------------------*/
/* crt.h - C runtime base include file */
/*---------------------------------------------------------------------------*/
#include <time.h> /* includes time.h, locale.h and crtdef.h */
... |
7517fa1b0ca26265c7a75039ce37ef328e67508cf0b74673631a6a2663d08603 | C/C++ | 321 | 14 | #ifndef MIIC_R_CPP_INTERFACE_H_
#define MIIC_R_CPP_INTERFACE_H_
#include <Rcpp.h>
#include "environment.h"
namespace miic {
namespace utility {
void setEnvironmentFromR(
const Rcpp::List&, const Rcpp::List&, structure::Environment&);
} // namespace utility
} // namespace miic
#endif // MIIC_R_CPP_INTERFACE_H_... |
72e5bbf6ea34842031b097067feb56b5e63b72dfab196c8e5b883e0f09bc9618 | C/C++ | 329 | 8 | // This file was GENERATED by command:
// pump.py gmock-generated-actions.h.pump
// DO NOT EDIT BY HAND!!!
#ifndef GMOCK_INCLUDE_GMOCK_INTERNAL_CUSTOM_GMOCK_GENERATED_ACTIONS_H_
#define GMOCK_INCLUDE_GMOCK_INTERNAL_CUSTOM_GMOCK_GENERATED_ACTIONS_H_
#endif // GMOCK_INCLUDE_GMOCK_INTERNAL_CUSTOM_GMOCK_GENERATED_AC... |
976aaa85089f285bcb542055f30ba250e59ea6a32a71e75ce806ba257e05966b | C/C++ | 331 | 19 | #ifndef _LSONG_RSCAF_DEFS_HEADER
#define _LSONG_RSCAF_DEFS_HEADER
#include <stdint.h>
#define MAX_SEG_COUNT 127
struct _pair
{
int64_t a, b ;
} ;
char nucToNum[26] = { 0, -1, 1, -1, -1, -1, 2,
-1, -1, -1, -1, -1, -1, -1,
-1, -1, -1, -1, -1, 3,
-1, -1, -1, -1, -1, -1 } ;
char numToNuc[26] = {'A', 'C', 'G', 'T'... |
6b0699dfacabac0cdcd267398aadb01113e7bb8141e9c1c4739176cc65721a12 | C/C++ | 336 | 16 | #ifndef __STDDEF_H
#define __STDDEF_H
#ifndef _SIZE_T_DEFINED
typedef unsigned long long size_t;
#define _SIZE_T_DEFINED
#endif
typedef long long ptrdiff_t;
#define offsetof(s,m) (long long)&(((s *)0)->m)
#ifndef NULL
#define NULL (void *)0
#endif
#ifndef _RSIZE_T_DEFINED
#define _RSIZE_T_DEFINED
typedef size_t rsize_t... |
1819748a55486130afebca0c496b057a73a7598b37991e260543e341f1ea5478 | C/C++ | 342 | 17 | #include<R.h>
#include<Rdefines.h>
#include "Matrix.h"
int *random_idx(const int n);
int shuffle(double tmp[], int const idx[], const int n);
void random_index_init(int perm, int n_unit);
void random_index_free();
int shuffle_index(double *tmp, int index, int length);
int get_perm_idx(int i, int j);
const int *ge... |
b84d14727e31b7840295ce83fe9aadc21d1e7ed9d0ec2f456507237cf1d67a04 | C/C++ | 342 | 15 | #ifndef __safelib_h__
#define __safelib_h__
int ConstraintFailed( const char *fn, const char *reason, void *reserved );
#define __STDC_LIB_EXT1__
#ifndef _ERRNO_T_DEFINED
typedef int errno_t;
#define _ERRNO_T_DEFINED
#endif
#define L_tmpnam_s 512
#ifndef _RSIZE_T_DEFINED
#define _RSIZE_T_DEFINED
typedef unsigned int rs... |
624eab979168603019eada9253bd06f703e6552cd9bbfe7904686a2b13f735ff | C/C++ | 350 | 13 | #ifndef _INC_UTIME
#define _INC_UTIME
#pragma pack(push,8)
struct _utimbuf {
long actime; /* access time */
long modtime; /* modification time */
};
#define utimbuf _utimbuf
int _utime(const char *, struct _utimbuf *);
int _futime(int, struct _utimbuf *);
int _wutime(const short *, struct _utimbuf *);
#pragma pack... |
347b636244802e167d1cec78e3a3b66b79e272d0cf4d286ce2ce147a3b805702 | C/C++ | 353 | 17 | /**
* Copyright 2020-2024 by XGBoost Contributors
*/
#ifndef XGBOOST_TEST_QUANTILE_OBJ_H_
#define XGBOOST_TEST_QUANTILE_OBJ_H_
#include <xgboost/context.h> // for Context
namespace xgboost {
void TestQuantile(const Context* ctx);
void TestQuantileIntercept(const Context* ctx);
} // namespace xgboost
#endif /... |
3d61a270767626d176388bcd78f3cdff5b41fa893a2fc4ef2b1dd5e5c3510baf | C/C++ | 369 | 30 | /*++
Module Name:
exit.h
Abstract:
Header for SNAP soft exit function
Authors:
Bill Bolosky, February, 2013
Environment:
User mode service.
Revision History:
--*/
#pragma once
#define soft_exit(n) soft_exit_function(n, __FILE__, __LINE__)
void soft_exit_no_print(int n);
void soft_exit_fun... |
8d48da794f3476c97a79b83ee87e1e70a76a6641eaf1647504d5e7e4a15c0b4c | C/C++ | 371 | 14 | // stdafx.h : include file for standard system include files,
// or project specific include files that are used frequently, but
// are changed infrequently
//
#pragma once
#include "targetver.h"
#define WIN32_LEAN_AND_MEAN // Exclude rarely-used stuff from Windows headers
// TODO: refere... |
9eb5e1866ca1ea076b0c310497ed90f705ca0551ba3994e8478b6530fcbb785d | C/C++ | 376 | 21 | #ifndef __winresrc__
#define __winresrc__
#ifndef WINVER
#define WINVER 0x0500
#endif
#ifndef _WIN32_IE
#define _WIN32_IE 0x0501
#endif
#ifndef _WIN32_WINDOWS
#define _WIN32_WINDOWS 0x0410
#endif
#ifndef _WIN32_WINNT
#define _WIN32_WINNT 0x0500
#endif
#include <winuser.h>
#include <commctrl.h>
#include <dde.h>
#include... |
a044da4b485c93d0e1a79c62356b22c8856dd2bab537ffb6a9446fc905131316 | C/C++ | 388 | 18 | #ifndef FLUTTER_MY_APPLICATION_H_
#define FLUTTER_MY_APPLICATION_H_
#include <gtk/gtk.h>
G_DECLARE_FINAL_TYPE(MyApplication, my_application, MY, APPLICATION,
GtkApplication)
/**
* my_application_new:
*
* Creates a new Flutter-based application.
*
* Returns: a new #MyApplication.
*/
MyAppli... |
76f53d8b607116299c9a4c8153df4ef8f0e1fbe3213a3135b50fd1202034a93e | C/C++ | 394 | 10 | #ifndef LINUX_MODULE_H_
#define LINUX_MODULE_H_
#define EXPORT_SYMBOL(symbol) \
void* __##symbol = symbol
#define MODULE_LICENSE(license) static char const *const LICENSE = license
#define MODULE_DESCRIPTION(description) \
stat... |
6a12bd8b5981258752224c93ce75e674a0a0fb0162783e9dca0f87b9057dfc57 | C/C++ | 410 | 24 | #ifndef PHP_A3M_READER_H
#define PHP_A3M_READER_H
#include <cstddef>
#include <vector>
#include <string>
class A3mReader {
public:
A3mReader(std::string a3m);
std::string getFasta();
private:
void addSequence(const std::string& sequence);
bool columnHasInsertion(size_t col);
std::vector<std::s... |
b12f6faa126eba1a0b8b952d2aba81d6daa74267aaf6befc1efcbbd7f2769b8d | C/C++ | 412 | 15 | #ifndef DEFINITIONS_H
#define DEFINITIONS_H
#define PROTOCOL_I2C -2
#define PROTOCOL_SPI -3
#define SEND_COMMAND_VALUE_H -5
#define SEND_COMMAND_VALUE_L -6
#define SEND_COMMAND_VALUE -6
#define SEND_COMMAND_VALUE_H16 -7
#define SEND_COMMAND_VALUE_H24 -8
#define SEND_COMMAND_VALUE2_H -9
#de... |
bc8d34957ccc6cf35dccd018c2331ec886f818a0ca832120cc097a0594aa6aef | C/C++ | 412 | 34 | /*++
Module Name:
Error.h
Abstract:
Header for SNAP error-message writer
Authors:
Bill Bolosky, Feburary, 2014
Environment:
User mode service.
Revision History:
--*/
#pragma once
#include "Compat.h"
void
WriteErrorMessage(const char *message, ...);
void
WriteStatusMessage(const cha... |
a69ed97253c59a94e3687854b34ea27f725f0b5a47c1833e1554c78a545546ee | C/C++ | 413 | 15 | #include <string>
#include <vector>
#include <map>
#include <bitset>
#include <algorithm>
#include <stdlib.h>
#include <cstdint>
namespace scutil{
int hamming_distance(const std::string &A, const std::string &B);
double edit_distance(const std::string& A, const std::string& B);
unsigned int edit_distance1(... |
c847bc414d9b2902e0eac687461560e752da710f3737f49180b91322f181d72f | C/C++ | 419 | 19 | #ifndef BAM_POOL_H
#define BAM_POOL_H
#include "htslib/hts.h"
#include "htslib/sam.h"
struct bam_pool {
int n, m;
bam1_t *bam;
sam_hdr_t *hdr;
void *extend;
};
extern struct bam_pool *bam_pool_create();
extern struct bam_pool *bam_pool_init(int size);
extern void bam_read_pool(struct bam_pool *p, hts... |
59bc0df9bfcf61e81716bfe3a69c99329f5fdaa492fb98bc76d63e10f8456ba4 | C/C++ | 423 | 6 | /* ZDICT_trainFromBuffer_legacy() :
* issue : samplesBuffer need to be followed by a noisy guard band.
* work around : duplicate the buffer, and add the noise */
size_t ZDICT_trainFromBuffer_legacy(void* dictBuffer, size_t dictBufferCapacity,
const void* samplesBuffer, const size_t... |
97cfa6177f763d1acd3236338c059d56a3840fd24c3c24ec7748b437687518c1 | C/C++ | 428 | 24 | #ifndef UMI_CORR_H
#define UMI_CORR_H
#include <stdlib.h>
struct block_umi;
struct corr_tag {
int n, m;
struct block_umi *umi;
void *dict;
};
struct corr_tag *corr_tag_build();
void corr_tag_destory(struct corr_tag *C);
void corr_tag_push(struct corr_tag *C, char const *n, char const *u);
char *corr_... |
1fa98588b04561590ba1cf0521ab86a9db4a878312f21c9d5861d965ddd8d1ae | C/C++ | 432 | 16 | //{{NO_DEPENDENCIES}}
// Microsoft Visual C++ generated include file.
// Used by Runner.rc
//
#define IDI_APP_ICON 101
// Next default values for new objects
//
#ifdef APSTUDIO_INVOKED
#ifndef APSTUDIO_READONLY_SYMBOLS
#define _APS_NEXT_RESOURCE_VALUE 102
#define _APS_NEXT_COMMAND_VALUE ... |
ed2e5d4b0d6a51646168810bea1691d333d6ac65267a6b4ec24920b1dffe10d2 | C/C++ | 437 | 14 | #ifndef __BLAST_UTILS_H__
#define __BLAST_UTILS_H__
#include <inttypes.h>
#include <stdio.h>
FILE *open_file(const char *filename, const char *mode);
void *alloc_memory(void *data, uint32_t element_size, uint32_t old_size, uint32_t new_size);
uint32_t nlz(uint32_t x);
uint32_t next_power_of_2(uint32_t n);
uint32_t r... |
d34e185014435526e7f2137a92041515e3c0f13668eecd4d250d2696bbd4716a | C/C++ | 440 | 17 | #ifndef MIIC_RECONSTRUCT_H_
#define MIIC_RECONSTRUCT_H_
#include "biconnected_component.h"
#include "environment.h"
namespace miic {
namespace reconstruction {
bool initializeSkeleton(structure::Environment&);
bool setBestContributingNode(structure::Environment&, BiconnectedComponent&);
bool searchForConditionalInde... |
15a526e53ab3546dad9ef2a366cbba32dff0e29c0b5ccdbc9b09f48780c81ef6 | C/C++ | 442 | 21 | #ifndef REGION_IDX_H
#define REGION_IDX_H
struct region_index;
struct region_itr {
int n;
void **rets;
};
struct region_index *region_index_create();
void region_index_destroy(struct region_index *idx);
void index_bin_push(struct region_index *idx, uint32_t start, uint32_t end, void *new);
struct region_i... |
ccfc293de698fb8a43d26adbebdeaa4258204962cb26ee080ca2a516e76888af | C/C++ | 444 | 27 | //
// Created by hoseok on 11/3/18.
//
#ifndef EXAM_SIMPLEMOTION_H
#define EXAM_SIMPLEMOTION_H
#include <string>
#include <vector>
#include "Eigen/Core"
namespace MASS
{
class SimpleMotion
{
public:
SimpleMotion();
std::vector<std::pair<int, double>> getPose(double ratio);
std::vector<int> idx;
std::vec... |
d28d8bcc7bac0249a5634a492039ef480ee3311763cb6e22f7876450c95244f9 | C/C++ | 445 | 19 | #ifndef MIIC_ORIENTATION_PROBABILITY_H_
#define MIIC_ORIENTATION_PROBABILITY_H_
#include <string>
#include <vector>
#include "environment.h"
namespace miic {
namespace reconstruction {
void updateAdj(structure::Environment&, int, int, double, double);
std::vector<std::vector<std::string>> orientationProbability(
... |
7f4657cceecbe1fa28660c349da976c38fad80ef111c96c6873d4fd755842452 | C/C++ | 459 | 12 | /*---------------------------------------------------------------------------*/
/* share.h - file sharing constants */
/*---------------------------------------------------------------------------*/
#define A_NORMAL 0x0000
#define A_RDONLY 0x0001
#define SH_COMPAT... |
8efebdb4bfcc4fb2c1bb492f47db84dfbaf8cd9b90ae2e4ffefce841f3fab65f | C/C++ | 459 | 30 | #ifndef BED_HEADER
#define BED_HEADER
#include "utils.h"
struct bed {
int start;
int end;
char *name;
void *data;
};
struct bed_chr {
int id;
int n, m;
struct bed *b;
};
struct bedaux {
int n, m;
char **names;
struct bed_chr *c;
void *name2id;
};
extern struct bedaux *be... |
0995e58e5d8ba0e2b28187150feb46a12c9b7ee2bf27be43b00926cd1c9a9c31 | C/C++ | 461 | 23 | // Simimarity Search of short DNA sequences 10~16bp
#ifndef SIM_SEARCH_HEADER
#define SIM_SEARCH_HEADER
typedef uint64_t base64_t;
typedef uint32_t base32_t;
typedef struct similarity_search_aux ss_t;
extern void set_levenshtein();
extern void set_hamming();
extern void set_mix();
extern ss_t *ss_init();
extern c... |
b811f0765d258a042c3fa25d5a9d2a373bc19bee5eb5a09e8283db83056f97fc | C/C++ | 466 | 24 | #ifndef NUCLEOTIDE_MATRIX_H
#define NUCLEOTIDE_MATRIX_H
#include "SubstitutionMatrix.h"
class NucleotideMatrix : public SubstitutionMatrix {
public:
NucleotideMatrix(const char *scoringMatrixFileName, float bitFactor, float scoreBias);
virtual ~NucleotideMatrix();
using BaseMatrix::getBitFactor;
vo... |
7fe016b8be3c8b679c45a74d695b34449df7e8df87885243c46fbed36aa1e585 | C/C++ | 471 | 36 | /*++
Module Name:
WindowsFileMapper.h
Abstract:
Header for support code for file mapping on Windows
Authors:
Bill Bolosky, November, 2012
Environment:
User mode service.
Revision History:
--*/
#pragma once
#ifdef _MSC_VER
class WindowsFileMapper {
public:
WindowsFileMapper();
... |
8c0ba721c64fdf594bb2a0ccbafcfb811898579558636b216b437a362642b415 | C/C++ | 483 | 16 | //
// Created by Martin Steinegger on 6/21/20.
//
#ifndef MMSEQS_MEMORYTRACKER_H
#define MMSEQS_MEMORYTRACKER_H
#include "stddef.h"
class MemoryTracker{
public:
static size_t getSize() { return totalMemorySizeInst;};
protected:
static size_t totalMemorySizeInst;
static void incrementMemory(size_t memorySiz... |
01e3697c109b358c45cddb8af75066b3de5499f2064f844ffa3c86a8691e6516 | C/C++ | 488 | 22 | #ifndef BAM_REGION_H
#define BAM_REGION_H
#include "utils.h"
#include "bed.h"
#include "region_index.h"
#include "htslib/hts.h"
#include "htslib/sam.h"
struct bam_region_itr {
struct bed_spec *bed;
hts_idx_t *idx;
hts_itr_t *itr;
int i_bed;
};
struct bam_region_itr *bri_init(htsFile *fp, const char *... |
0d98e9621a2518edbffb7608a99c1e432a4b16fd2f43effcfd126de3c8a9e189 | C/C++ | 492 | 29 | /*++
Module Name:
CommandProcessor.h
Abstract:
Header for running the top-level commands of SNAP
Authors:
Bill Bolosky, November, 2014
Environment:
User mode service.
Revision History:
--*/
#pragma once
#include "Compat.h"
extern void ProcessTopLevelCommands(int argc, const char **argv);
extern... |
89c4d6cf27f1e83a5cc6f55ce1b64d1a47473ba790e1a8d03b0ccb92c465d0f0 | C/C++ | 494 | 25 | #include <assert.h>
#include <complex.h>
#include <ctype.h>
#include <fenv.h>
#include <float.h>
#include <inttypes.h>
#include <limits.h>
#include <locale.h>
#include <math.h>
#include <setjmp.h>
#include <signal.h>
#include <stdarg.h>
#include <stdbool.h>
#include <stddef.h>
#include <stdint.h>
#include <stdio.h>
#in... |
35f7e4c875587ac9451821c89725b45c690e1a3342ef5ba903914e84dabe28d0 | C/C++ | 497 | 22 | #ifndef MMSEQS_COMMANDCALLER_H
#define MMSEQS_COMMANDCALLER_H
#include <cstddef>
#include <string>
#include <vector>
class CommandCaller {
public:
CommandCaller();
void addVariable(const char* key, const char* value);
int callProgram(const char* program, size_t argc, const char **argv);
static unsi... |
fec843fad67c0a1b6496992bbdc660cde5e3f59322feebe75b3fe38d48c87d18 | C/C++ | 501 | 17 | #ifndef ANCHOR_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define ANCHOR_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#if defined(_MSC_VER) || \
(defined(__GNUC__) && (__GNUC__ == 3 && __GNUC_MINOR__ >= 4) || \
(__GNUC__ >= 4)) // GCC supports "pragma once" correctly since 3.... |
ff854b2abd44bbb7c3a0f0e557068d2613e6a9dbcbf38ccd563942a7bb0ff1c2 | C/C++ | 502 | 16 | #ifndef EMITTERSTYLE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define EMITTERSTYLE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#if defined(_MSC_VER) || \
(defined(__GNUC__) && (__GNUC__ == 3 && __GNUC_MINOR__ >= 4) || \
(__GNUC__ >= 4)) // GCC supports "pragma once" correc... |
bc95dcef26b914ebab15dec896ca3349e21a2a61609567c8d1e64785682c677f | C/C++ | 505 | 27 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* rtwtypes.h
*
* Code generation for function 'multitaper_spectrogram_coder'
*
*/
#pragma once
/* Include f... |
de43d96a94d7b70b874df235229e6fb968e77a79e1195e48347dacea91af69d3 | C/C++ | 507 | 21 | #ifndef BARCODE_LIST_H
#define BARCODE_LIST_H
#include <stdio.h>
#include <stdlib.h>
struct barcode {
char *s;
void *data;
};
struct barcode_list {
struct barcode *b;
int n, m;
void *hash;
};
extern struct barcode_list *barcode_init();
extern int barcode_read(struct barcode_list *lb, const char *f... |
dd19cd477379648c56f5640f58ac9ab2d89e8374bdd96d023dbd484492fbd480 | C/C++ | 510 | 16 | #ifndef VALUE_TYPE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define VALUE_TYPE_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#if defined(_MSC_VER) || \
(defined(__GNUC__) && (__GNUC__ == 3 && __GNUC_MINOR__ >= 4) || \
(__GNUC__ >= 4)) // GCC supports "pragma once" correctly ... |
64b806862f827a01b6d021d700c7075f64ab5c5f6c3c028f2c8dc198fbe1730f | C/C++ | 518 | 19 | #ifndef XGBOOST_COMMON_PSEUDO_HUBER_H_
#define XGBOOST_COMMON_PSEUDO_HUBER_H_
/*!
* Copyright 2022, by XGBoost Contributors
*/
#include "xgboost/parameter.h"
namespace xgboost {
struct PesudoHuberParam : public XGBoostParameter<PesudoHuberParam> {
float huber_slope{1.0};
DMLC_DECLARE_PARAMETER(PesudoHuberParam)... |
87b587fe7e3865be515a732d506cada8436389015f49762e0df5fb22d622f714 | C/C++ | 519 | 36 | /*++
Module Name:
Directions.h
Abstract:
Definitions for basic read directions (forward & reverse compliment)
Authors:
Bill Bolosky, January, 2013
Environment:
User mode service.
Revision History:
--*/
#pragma once
const int NUM_DIRECTIONS = 2; // Forward and reverse compliment
type... |
3ef28d593bb11df52974ca12844d6d0d742a346e4b9a360797f8b9585d7a5ea9 | C/C++ | 524 | 20 | #ifndef MMSEQS_INDEXTYPES_H
#define MMSEQS_INDEXTYPES_H
#include <cstdint>
#include <cstddef>
#include <limits>
#ifdef MMSEQS_INT64_IDS
using DBKeyType = uint64_t;
using DBLocalId = uint64_t;
#else
using DBKeyType = uint32_t;
using DBLocalId = uint32_t;
#endif
static constexpr DBKeyType DB_KEY_INVALID = std::numeric... |
2386ba26318b06bc62c4304025f2f57fd0f9341a7339e3c47184698c682c4a3c | C/C++ | 526 | 31 | #ifndef MMSEQS_TIMER_H
#define MMSEQS_TIMER_H
#include <sys/time.h>
#include <string>
class Timer {
public:
Timer() {
reset();
};
std::string lapProgress();
std::string lap();
double getTimediff(){
struct timeval end;
gettimeofday(&end, NULL);
double timediff = (... |
006c8d0b80170f6074149b1cffbc66d85181fcac6a1b754f7e9d5bb7a96e8bca | C/C++ | 538 | 29 | //
// Created by Martin Steinegger on 10/1/21.
//
#ifndef MMSEQS_DOWNLOADDATABASE_H
#define MMSEQS_DOWNLOADDATABASE_H
#include <vector>
#include <string>
struct EnvironmentEntry {
const char* key;
const char* value;
};
struct DatabaseDownload {
const char *name;
const char *description;
const ch... |
7c119ed9473d2312ed89dbba472b175f49a4fd072171db95abe516a0ee11f967 | C/C++ | 540 | 20 |
#define AHK_NAME "AutoHotkey"
#define T_AHK_NAME _T(AHK_NAME)
#ifndef RAW_AHK_VERSION
// Fallback version string for when `git describe` fails during build.
#define RAW_AHK_VERSION "2.0"
#endif
#ifdef RC_INVOKED
#define AHK_VERSION RAW_AHK_VERSION
#ifndef AHK_VERSION_N
#define AHK_VERSION_N 2,0,0,0
#endif
#else... |
58d709085b46f31eef29fd8074d1c6d1657d3ebd4fb393b1c06a73cef69e6e48 | C/C++ | 541 | 16 | #ifndef EMITTERDEF_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define EMITTERDEF_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#if defined(_MSC_VER) || \
(defined(__GNUC__) && (__GNUC__ == 3 && __GNUC_MINOR__ >= 4) || \
(__GNUC__ >= 4)) // GCC supports "pragma once" correctly ... |
905478618ff08d57c536e0c4f9ba1f141fa169e78eb550ed259546f815ddf366 | C/C++ | 542 | 26 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* nextpow2.h
*
* Code generation for function 'nextpow2'
*
*/
#pragma once
/* Include files */
#include "rt... |
7f6648c39d2b4496bf27adcaccd4e1ab9c66359b208a33b9c5c03235474ab9e1 | C/C++ | 547 | 16 | /******************************************************************
* *
* Copyright by Joachim Saul <saul@gfz-potsdam.de> *
* *
***********************************************... |
08555d3fce66bfe3a76f4845726a5854db27324bc279a893bf375b594288c4d5 | C/C++ | 548 | 26 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* warning.h
*
* Code generation for function 'warning'
*
*/
#pragma once
/* Include files */
#include "rtwt... |
0c3bf7813a06eaf40c89653c66a322826eeab17032677c5f6e1fb7e52792f335 | C/C++ | 556 | 11 | //-----------------------------------------------------------------------------
// COMPILE-TIME OPTIONS FOR DEAR IMGUI ALLEGRO 5 EXAMPLE
// See imconfig.h for the full template
// Because Allegro doesn't support 16-bit vertex indices, we enable the compile-time option of imgui to use 32-bit indices
//------------------... |
4cd8e84bd7681c5aff0d57e774bfb6919851f6e4ee6b6f6d06787fe8768217ad | C/C++ | 563 | 25 | /**
* Copyright 2024, XGBoost Contributors
*
* @brief RAII guard, simplified version of absl::Cleanup
*/
#pragma once
#include <functional> // for function
#include <utility> // for forward
namespace xgboost::common {
class Cleanup {
std::function<void()> cb_;
public:
template <typename Callback>
expl... |
e2aa5d958f8b0088a96210ba2b2f8be58c9d577584cc7230f7c1a012d51d7c2e | C/C++ | 591 | 32 | //
// Created by annika on 09.11.22.
//
#ifndef MMSEQS_SEQUENCEWEIGHTS_H
#define MMSEQS_SEQUENCEWEIGHTS_H
#include "IndexTypes.h"
class SequenceWeights{
public:
struct WeightIndexEntry {
DBKeyType id;
float weight;
static bool compareByIdOnly(const WeightIndexEntry &x, const WeightIndexE... |
4929f568f1595f8c8762b37b14e05d27216c85a9230b2e814eb9643ae846848b | C/C++ | 603 | 16 | #ifndef MMSEQS_INDEXBUILDER_H
#define MMSEQS_INDEXBUILDER_H
#include "IndexTable.h"
#include "ExtendedSubstitutionMatrix.h"
class IndexBuilder {
public:
static void fillDatabase(IndexTable *indexTable, SequenceLookup **externalLookup,
BaseMatrix &subMat,
S... |
644e0820933c19a8b743ba6ece451b1477071775a6961dafc00e501503d9084d | C/C++ | 609 | 27 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* issorted.h
*
* Code generation for function 'issorted'
*
*/
#pragma once
/* Include files */
#include "mu... |
488b89e8c4dd152a713db4b8780507dd1b6f1b469705111a85361b66d24609cf | C/C++ | 610 | 23 | /*
* Copyright 2013-2023, Derrick Wood <dwood@cs.jhu.edu>
*
* This file is part of the Kraken 2 taxonomic sequence classification system.
*/
#ifndef KRAKEN2_AA_TRANSLATE_H_
#define KRAKEN2_AA_TRANSLATE_H_
#include "kraken2_headers.h"
namespace kraken2 {
void initLookUpTables();
// Translates a span of bases int... |
2cd19709b9c19b3891d159dcb8c5725a02644100d39a34008cfd4ba2667b34c5 | C/C++ | 612 | 27 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* trisolve.h
*
* Code generation for function 'trisolve'
*
*/
#pragma once
/* Include files */
#include "rt... |
9361bf6e0799bc741487766eec1e7ea898ec08281adadb4e0e09463fa80da195 | C/C++ | 614 | 27 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* any.h
*
* Code generation for function 'any'
*
*/
#pragma once
/* Include files */
#include "multitaper_s... |
ce69140441cd91aeefd4e9f3c8c85c43b10a5302407404ecd059dca7639d9e00 | C/C++ | 614 | 27 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* all.h
*
* Code generation for function 'all'
*
*/
#pragma once
/* Include files */
#include "multitaper_s... |
6960b01908f737c0e1b16eb8ba9da01e06d8140e4b1913e1fb647bbbc1266872 | C/C++ | 627 | 19 | #ifndef SCANTAG_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#define SCANTAG_H_62B23520_7C8E_11DE_8A39_0800200C9A66
#if defined(_MSC_VER) || \
(defined(__GNUC__) && (__GNUC__ == 3 && __GNUC_MINOR__ >= 4) || \
(__GNUC__ >= 4)) // GCC supports "pragma once" correctly since ... |
40ac33a53145e0f82f6321856e9d2abb6887125afa7d8101e124abefc8d358b8 | C/C++ | 630 | 27 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* mtimes.h
*
* Code generation for function 'mtimes'
*
*/
#pragma once
/* Include files */
#include "multit... |
bb98286b11db1253da6ed0bf7d9a70e6ec3c0c4d8f56947a703ca1c66bbb055b | C/C++ | 630 | 28 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* any1.h
*
* Code generation for function 'any1'
*
*/
#pragma once
/* Include files */
#include <cmath>
#in... |
c4b4956d2d6a15d457271431232e558c7659ec9d97d3df4f186f334887fc0270 | C/C++ | 638 | 26 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* eml_int_forloop_overflow_check.h
*
* Code generation for function 'eml_int_forloop_overflow_check'
*
*/
#p... |
6f2e448c27d9c6abd7dc63587d1127d19ecad2e1217fff9d9a930c0f3cd369a3 | C/C++ | 639 | 23 | #ifndef FASTSORT_H
#define FASTSORT_H
#include <algorithm>
#ifdef ENABLE_IPS4O
# include "simde/hedley.h"
# if defined(HEDLEY_GCC_VERSION) && HEDLEY_GCC_VERSION_CHECK(0,0,0) && !HEDLEY_GCC_VERSION_CHECK(5,1,0) && defined(__cplusplus)
# define is_trivially_default_constructible has_trivial_default_constructor
# endif
... |
5525b24fd2ed2b760fb00cc922b1c025be23190e3a954f147e32986f990faf96 | C/C++ | 641 | 24 | #ifndef INCLUDE_CAFFE_UTIL_SIGNAL_HANDLER_H_
#define INCLUDE_CAFFE_UTIL_SIGNAL_HANDLER_H_
#include "caffe/proto/caffe.pb.h"
#include "caffe/solver.hpp"
namespace caffe {
class SignalHandler {
public:
// Constructor. Specify what action to take when a signal is received.
SignalHandler(SolverAction::Enum SIGINT_a... |
d21fd2ecdc449d9fb8157ecd870b3c8d755e3652ef5832aec8ef234c75c41c11 | C/C++ | 641 | 22 | #ifndef FQ_TAG
#define FQ_TAG
#include <stdio.h>
#include <stdlib.h>
#include "dict.h"
#include "fastq.h"
#define MAX_ID_LENGTH 254
struct dict *str2tag(const char *seq);
int fname_query_tag(const char *p, const char *tag);
char *fname_pick_tag(const char *p, const char *tag);
char *fname_concat_tag(char *p, const c... |
c01aa6cbb62586e125916f5a805be069d76c27d03907e9546d6d7fa009fd78a2 | C/C++ | 644 | 28 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* mean.h
*
* Code generation for function 'mean'
*
*/
#pragma once
/* Include files */
#include "multitaper... |
120aedf6b79ab4d72f6ca68a9e20390da8f5da0f9ff1a344c03e5f585db89b63 | C/C++ | 645 | 26 | #ifndef MMSEQS_HEADERSUMMARIZER_H
#define MMSEQS_HEADERSUMMARIZER_H
#include <string>
#include <vector>
class HeaderSummarizer {
public:
virtual std::string summarize(const std::vector<std::string>& headers) = 0;
virtual ~HeaderSummarizer() {};
};
class UniprotHeaderSummarizer : public HeaderSummarizer {
pub... |
557d9c2383c3bcae5624a115c00dfacb87285090c1c9be757d0e29795ba572c9 | C/C++ | 649 | 27 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* indexShapeCheck.h
*
* Code generation for function 'indexShapeCheck'
*
*/
#pragma once
/* Include files *... |
ffb59ac19485bd953d698f9e1c690fa9264a4258fcefa8744f49cb5252e225b2 | C/C++ | 652 | 28 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* find.h
*
* Code generation for function 'find'
*
*/
#pragma once
/* Include files */
#include "multitaper... |
5c89b4038ce82b7414d4f81bdf4c107a74a21a04712aeb29a8d7b5d127c33941 | C/C++ | 654 | 23 | /*
WG14/N869 January 18, 1999 Page 257
7.16 Boolean type and values <stdbool.h>
1 The header <stdbool.h> defines four macros.
2 The macro
bool
expands to _Bool.
3 The remaining three macros are suitable for use in #if preprocessing
directives. They are
true
which expands to the integer constant 1,
false
which expands ... |
005e112d7be5f48e93f9fcade687c446420145dabe439e4c37e4b8b1a3e9cab4 | C/C++ | 659 | 35 | #ifndef FASTQ_TD
#define FASTQ_TD
#include <stdio.h>
#include <stdlib.h>
#include "dict.h"
struct read {
char *name;
int l0, l1;
char *s0;
char *q0;
char *s1;
char *q1;
};
struct read_block {
char *name;
struct read *b;
int n, m;
int pair_mode;
};
struct thread_dat {
int n... |
32a4b404a153ac039b4ea576f182f15e4149902a565b0f04fcb1d22b538745b8 | C/C++ | 659 | 28 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* fft.h
*
* Code generation for function 'fft'
*
*/
#pragma once
/* Include files */
#include "multitaper_s... |
01f29fee33e548d8dc797d8f526793ba4e0884e0e686b8be2760d7773ff480ad | C/C++ | 660 | 26 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* multitaper_spectrogram_coder_initialize.h
*
* Code generation for function 'multitaper_spectrogram_coder_init... |
7234e8f8de6cda7d9798def855b1511a7f48520facb08f66e8017eadcb79471e | C/C++ | 663 | 22 | /*
* Copyright (c) 2008-2017, NVIDIA CORPORATION. All rights reserved.
*
* NVIDIA CORPORATION and its licensors retain all intellectual property
* and proprietary rights in and to this software, related documentation
* and any modifications thereto. Any use, reproduction, disclosure or
* distribution of this so... |
b6b07b868f7c8dfe86e5c646abb01c222c48466c9c51763b0feacba8533a1e87 | C/C++ | 666 | 29 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* power.h
*
* Code generation for function 'power'
*
*/
#pragma once
/* Include files */
#include "multitap... |
2f4a1fdc8a5d7ff5646e04e26f225598c7527450c23cc7fe42d5c3e16d7707c6 | C/C++ | 671 | 43 | /*++
Module Name:
AlignmentAdjuster.h
Abstract:
Header for code to adjust alignments to avoid indels at ends, or overhanging contig boundaries
Authors:
Bill Bolosky, May, 2016
Environment:
User mode service.
Revision History:
Pulled out of other places in SNAP
--*/
#pragma once
#include "Ge... |
95a7f7dddb832997cefa937a96f89472332277e75734a5de553610760b744b03 | C/C++ | 672 | 19 | #ifndef RUNNER_UTILS_H_
#define RUNNER_UTILS_H_
#include <string>
#include <vector>
// Creates a console for the process, and redirects stdout and stderr to
// it for both the runner and the Flutter library.
void CreateAndAttachConsole();
// Takes a null-terminated wchar_t* encoded in UTF-16 and returns a std::strin... |
ab20e7ec9536863664f4363a07811537ed5252a569e28609db2d14a1aadea15b | C/C++ | 673 | 28 | /*
* Academic License - for use in teaching, academic research, and meeting
* course requirements at degree granting institutions only. Not for
* government, commercial, or other organizational use.
*
* repmat.h
*
* Code generation for function 'repmat'
*
*/
#pragma once
/* Include files */
#include "multit... |
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