sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
7355dfc7555316b244bc1ff79ceb1ff39a9b7d46becf6030f10e45af5d0c54b6 | Rust | 21,199 | 532 | //! C bindings for block aligner.
//!
//! Generics are monomorphised manually.
//!
//! Nucleotide and arbitrary byte alignment do not have bindings yet.
use std::ffi::c_void;
use crate::scan_block::*;
use crate::scores::*;
use crate::cigar::*;
// avoid generics by using void pointer and monomorphism
/// A handle for... |
5062a9221cc9bf96fd4d73132ddf95448ca978e6c5b4f1239cc85cb8961d73ca | Rust | 22,324 | 544 | #[cfg(any(target_arch = "x86", target_arch = "x86_64"))]
use crate::avx2::*;
#[cfg(target_arch = "wasm32")]
use crate::simd128::*;
use crate::scores::*;
use std::{alloc, cmp, ptr, i16};
use std::marker::PhantomData;
const NULL: u8 = b'A' + 26u8; // this null byte value works for both amino acids and nucleotides
#[... |
619f21c2855e659955156a11765205a6f1ef4957e536a4fb91f6b792f6795b6a | Rust | 24,374 | 690 | #[cfg(any(target_arch = "x86", target_arch = "x86_64"))]
use crate::avx2::*;
#[cfg(target_arch = "wasm32")]
use crate::simd128::*;
use crate::scores::*;
use std::{cmp, ptr, i16};
use std::marker::PhantomData;
const NULL: u8 = b'A' + 26u8; // this null byte value works for both amino acids and nucleotides
// Notes:... |
5fe840b6ba7a3eb7146a16c089ce30d7726b545695f1de675ca99428ccf14a6e | Rust | 24,758 | 590 | #[cfg(any(target_arch = "x86", target_arch = "x86_64"))]
use crate::avx2::*;
#[cfg(target_arch = "wasm32")]
use crate::simd128::*;
use crate::scores::*;
use std::{alloc, cmp, ptr, i16};
use std::marker::PhantomData;
const NULL: u8 = b'A' + 26u8; // this null byte value works for both amino acids and nucleotides
#[... |
ae9e44e3c75723bbd80a058e78026c384efa4831319349a1f51a8dc3d7e50a23 | Rust | 26,123 | 721 | #[cfg(any(target_arch = "x86", target_arch = "x86_64"))]
use crate::avx2::*;
#[cfg(target_arch = "wasm32")]
use crate::simd128::*;
use crate::scores::*;
use std::{cmp, ptr, i16, alloc};
use std::marker::PhantomData;
const NULL: u8 = b'A' + 26u8; // this null byte value works for both amino acids and nucleotides
//... |
5389a7ab808511f2824472ddce335df6c5dd084b02d8a7808abec3281f486691 | Rust | 28,840 | 789 | //! Structs for representing match/mismatch scoring matrices.
#[cfg(feature = "simd_sse2")]
use crate::sse2::*;
#[cfg(feature = "simd_avx2")]
use crate::avx2::*;
#[cfg(feature = "simd_wasm")]
use crate::simd128::*;
#[cfg(feature = "simd_neon")]
use crate::neon::*;
#[cfg(feature = "no_simd")]
use crate::fallback::*... |
2af9e772cf8185afb353cf2be9c373e3bfeecad7b157ad896272c4d2e9dd0bf7 | Rust | 118,431 | 2,662 | //! Main block aligner algorithm and supporting data structures.
#[cfg(feature = "simd_sse2")]
use crate::sse2::*;
#[cfg(feature = "simd_avx2")]
use crate::avx2::*;
#[cfg(feature = "simd_wasm")]
use crate::simd128::*;
#[cfg(feature = "simd_neon")]
use crate::neon::*;
#[cfg(feature = "no_simd")]
use crate::fallback... |
7fadf4fb7c224b32d614648368e46e307ad8f2cbbc499743e1f58b6fe8ee1759 | Scala | 1,304 | 40 | /*
Copyright (c) 2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, so... |
3f5d31107370b25526bcf06f53623881cd8a2472574d7b36397bb273aad1d955 | Scala | 1,678 | 55 | /*
Copyright (c) 2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, so... |
1f863c64dd168c8f7f8b09d63233f1e1a39c9cddc20a569e63663929d87e0393 | Scala | 1,689 | 54 | /*
Copyright (c) 2014-2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
a9788e481e0dfbdeb3ba7b856742bfb0a3e519d98835925eb8fbdb42cf856798 | Scala | 1,691 | 48 | /*
Copyright (c) 2014 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, so... |
3290c2e89cee77678762a2d610ffae29b0314dedf57e9703dfd84a14e25555b0 | Scala | 1,772 | 53 | /*
Copyright (c) 2014-2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
cb8f19d036d91491130f5029d8485141c5e1d11f5352b5d1557de038aa9d5b76 | Scala | 2,128 | 59 | /*
Copyright (c) 2014-2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
ef7f77d68f215be386a0b02ce800c2764e3a1c313f23e2ae83889216aebad895 | Scala | 4,072 | 125 | /*
Copyright (c) 2014-2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
056fbb7000fab7993a6b9a1131492da801d0c8bc99148cade15ffe8822a1974c | Scala | 4,559 | 144 | /*
Copyright (c) 2021-2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
5bf27e377c00b3cc94a3847dea43e6e610e74d02c06ef95df9af3400d000a1e2 | Scala | 5,153 | 139 | /*
Copyright (c) 2014-2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
561403792fd9cdbbb35a04272661c5625a789fc20f10059192e34d6c37c61df2 | Scala | 5,927 | 140 | /*
Copyright (c) 2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, so... |
4eb1744969378260387bb7289a18fc54c032acab1862bbf469096a0c70753819 | Scala | 6,789 | 143 | /*
Copyright (c) 2014-2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
5aef40b732c0e562fc88b034336718c2a57e15d603901d5e85b58e4461a2437f | Scala | 10,681 | 372 | /*
Copyright (c) 2014-2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
fad8a6baa41ca30147ee00673f3cb3b8da6f19379ed6fdbe557c99fa749117d9 | Scala | 11,921 | 238 | /*
Copyright (c) 2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, so... |
67e940ed07b7270a30a8b78d11639726ed210ad2c25e392249b806dbb662116c | Scala | 12,192 | 336 | /*
Copyright (c) 2014-2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
8457e8f49798e12bb7a70e83177c8f8b0969606fb71ab84e460c39fb843a5dd8 | Scala | 12,348 | 342 | /*
Copyright (c) 2024-2025 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
352ebcc881e313f0b39456b9e85a877149b0500e3a65e40c2ea4f976a74eefb2 | Scala | 15,659 | 419 | /*
Copyright (c) 2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, so... |
c3a272980b0f99c6895f800858eb9b2e8c5ccee474a43d180ba5d024f0e3ab1f | Scala | 26,649 | 745 | /*
Copyright (c) 2024-2025 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writin... |
b72122b01ace53318fbb6acaff04e2ff37a28af08cb5f323dc38fe689a190cff | Scala | 27,045 | 723 | /*
Copyright (c) 2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, so... |
3423b4f9ba374f4fcfb7aa796638415431711fb351eb51cfd5842f63c3f897c9 | Scala | 27,707 | 754 | /*
Copyright (c) 2024 by Contributors
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, so... |
01204225a6074a423648547a2b6d2bec751c53a238454b2bec40e69d1933228e | Shell | 25 | 1 | rm -rf ./workspace_admin
|
0b98916c954ad509f5814a32fc0c27846a71521b7f68bba679eb98c5df20c7f5 | Shell | 28 | 1 | rm -rf workspace/pki_assets
|
2c616ccbfff53e0683487175929d11338c78ec3aa78b7772ddffa40a72cb7d3c | Shell | 32 | 2 | #!/bin/bash
systemctl start ssh
|
64d4d702058c03332c25f48efae98f81ca30029e062f1a430dc939ad27315075 | Shell | 32 | 1 | docker build --tag encodermap .
|
403eb2c2b6c0e3dcb57cb3fcb20b046ce194a12688b01c5f444da01ea861c064 | Shell | 33 | 1 | python /project/entrypoint.py $@
|
5fd27c52669fb2325a6d6fdbc69f263cb867430dba66e1b642577367c43e9091 | Shell | 39 | 2 | rm db.sqlite3
python manage.py migrate
|
b1340abba969f516b38e129152caa8928c894cc5f43ae042a244994efd2c4acf | Shell | 41 | 1 | cargo bench --features simd_avx2 -- "$@"
|
3cb9852950f0973e9ded5ba3ce664abe930fbdf97ce1a2959b787ec599a634e5 | Shell | 45 | 2 | ! cd project/serve
! uvicorn api:app --reload |
d8f3b73989b66f01be42f0bb5804f2d291c0eeccdfc89cdd3f660c37a394a20b | Shell | 45 | 2 | sh reset_db.sh
python seed.py --cert cert.crt |
9896729921bf99395824842ee26ee7b0e55b3804a57d0c393a8858f812e64a86 | Shell | 48 | 1 | cargo doc --features simd_avx2 --no-deps --open
|
f5353976c22d8204a8a1093f32b66c7109d274b56aa325176041662307760c7d | Shell | 51 | 1 | CUDA_VISIBLE_DEVICES=$1 fx collaborator start -n $2 |
e381012f9d31c9f0c90fe1a13b0b9a94fa43d8422c4dc42a1c446f12f2b4981f | Shell | 53 | 4 | #!/bin/bash
docker-compose stop
docker-compose down
|
957495cf052bc082a48f096ad4c41a130c07c35ce207fe84cd9867bfad8a8fba | Shell | 56 | 2 | #!/usr/bin/env bash
docker build --tag encodermap_gpu .
|
1b55fac6aacf11626252deee7bec02eec4bd2ffc1c99c8326be79f7c0ca5a863 | Shell | 57 | 4 | #!/bin/sh
python3 -m venv venv
source venv/bin/activate
|
55e4472a1e64aa3d123a12ecf26d60ee576c35ef294e2f48dd3ab3eb8653c968 | Shell | 57 | 2 | rm -rf workspace_admin/status
rm -rf workspace_admin/tmp
|
0cf5f839a15e6803ae108065b403246ebcca4da2992d498c21505192447767e8 | Shell | 58 | 6 | #!/bin/bash
for i in {1..30}
do
python sir.py $i
done |
3f1e5ff3f052b9bdcb30c4ad922ca6002035b6351e8bf6af061b1fb6749fecbe | Shell | 58 | 4 | #!/bin/sh
mkdir STAR_reference/
chmod 755 STAR_reference
|
fd8f25fbec8929569314c0b211b6f18ceff6ed49f432dc094689c257c8eb1e69 | Shell | 60 | 1 | docker build -t mlcommons/fl-test-prep:0.0.1 -f Dockerfile . |
e8850862d4c09eabede7c9511c655652cd28611cd3d0115d78092ecbf53a055f | Shell | 63 | 1 | docker build -t mlcommons/medperf-test-ca:0.0.2 -f Dockerfile . |
f5018cf15bac16fe2d267380028cb6e544f4d288fe899eca5027d12acab12171 | Shell | 63 | 4 | #!/bin/bash
nrnivmodl ./mechanisms
python opt_l5pc.py --start
|
579488645909f8125c4b7748c2dab98bc72bce79a0424a460cc127d06d3be8ad | Shell | 64 | 5 | #! /bin/sh
set -eux
cd .
docker build -t dat2-cwl/mkdir_star .
|
c876448e4d204ac1401702a8f107f409a60da0794f37630312293eb006302461 | Shell | 64 | 1 | docker build . -t tmp-local/chestxray-tutorial-cnn-private:0.0.1 |
d5afc682cbf4fd10e4dd34b26465e6c6108aa7ac8ee871c69edc3eaa1922f1ed | Shell | 64 | 1 | docker build -t mlcommons/medperf-step-cli:0.0.3 -f Dockerfile . |
15c87629b9da4f37d664a90125b8a596a23eea45d642a92c879b86b76a7432e4 | Shell | 65 | 1 | docker build -t mlcommons/medperf-flower-fl:1.0.0 -f Dockerfile . |
8b1e1bcddfc5bfb8964d35a8e9b55460ac6958186848427e279dfa6271968d9b | Shell | 65 | 1 | cargo run --example debug --release --features simd_avx2 -- "$@"
|
a47e9c71a8d3cdc6c66821e13d8708f0708dc6db09342d56208c44244686d51d | Shell | 67 | 1 | cargo run --example compare --release --features simd_avx2 -- "$@"
|
1f17c28eb13ead5277548fb98e2885309795db180b2a94999cc5265c7c5966b0 | Shell | 68 | 1 | cp workspace/training_config.yaml workspace_agg/training_config.yaml |
508ba3cc20ed6af6c8ccc48cfc64e3528e955231ab284a700cd1cf78317e66fd | Shell | 68 | 1 | cargo run --example uc_bench --release --features simd_avx2 -- "$@"
|
741114870a886869111e703d3fee576012cd57aa72ce3dc6f651d83bcb12a108 | Shell | 68 | 1 | cargo run --example accuracy --release --features simd_avx2 -- "$@"
|
b35eaef5143077bf6f48eb3b4abdd5c01eda7f6c7f657b2c2d1ae92981e457b7 | Shell | 69 | 1 | cargo doc --target=wasm32-wasi --features simd_wasm --no-deps --open
|
b61ec1711cda0a31eb5294dcb289d1be1a2da3b9a9cd5474c9f1c639cdc4f443 | Shell | 69 | 3 | #!/bin/bash
conda env export --no-builds > env/conda_environment.yml |
144d990e1e693a8fb0aaa910ee1e04b5b4b84a2419f6c9205d5b875de4fe1cb2 | Shell | 70 | 1 | cargo run --example pssm_bench --release --features simd_avx2 -- "$@"
|
569172e299610cfbc0f9c66ab7ced399f2693ec8901d42515ca6e55314a30934 | Shell | 70 | 4 | #!/bin/bash
docker-compose stop
docker-compose down --remove-orphans
|
06ce123349a67aca8be46f869b0b57b3a6b5b2ab445133d9d67d0e89711f93d0 | Shell | 71 | 1 | docker build -t mlcommons/medperf-flower-fl-admin:1.0.0 -f Dockerfile . |
601d44b70d32e836d24a19961b9a78decc6d5a6cc808bb95303b43fcb0ce9145 | Shell | 71 | 1 | cargo run --example uc_accuracy --release --features simd_avx2 -- "$@"
|
d26e28ea14861101f0c2a8fe9b2a8356d54c0cb88aa4b0062f76b349d7dee712 | Shell | 71 | 8 | #/bin/bash
rm Obser*
sphinx-apidoc -f -o . ../
make clean
make html
|
ef47879133ad6d2448f76b239f35190af4fc9bda13ed2bc533e7212726311374 | Shell | 71 | 6 | ### need to run in the tag environment
cores=40
snakemake -j $cores
|
7b7743ecb5477ee66d8e2cb52eef5935c1c275c30275aefdce6f8c1acf770618 | Shell | 72 | 4 | rm -rf ./mlcube_agg
rm -rf ./mlcube_col*
rm -rf ./ca
rm -rf ./for_admin
|
82d107629470f8f751314f7f6e6f0ed264a3a92393268190888f9f82a49da935 | Shell | 73 | 1 | cargo run --example pssm_accuracy --release --features simd_avx2 -- "$@"
|
03c4e84e853872a254fa3ff70cfd6d6af34ef3afe48b9ac4d87b1b1593d11bf1 | Shell | 74 | 4 | for i in {0..10}
do
python3 infer_all_pairs.py --cuda 3 --fold $i
done |
b947c823950acaa815f0f186af7c768b4f9492d61139701974b7c4642fed2adc | Shell | 74 | 3 | rm -rf workspace/data
rm -rf workspace/labels
rm -rf workspace/statistics
|
c09fec939cd3b21f3591c9043158e29bcf3930d503c25821f676a36ecd6b9b12 | Shell | 74 | 1 | cargo run --example nanopore_bench --release --features simd_avx2 -- "$@"
|
9c7eaf550039eca783cb12de4ec1a4d328a7e8f88f7359d492f1b22e89666a9f | Shell | 75 | 1 | cargo run --example x_drop_accuracy --release --features simd_avx2 -- "$@"
|
3ad41a01bcc58ddc50198391dcb051c8fc155f36b6512301d6d77eba4cdae40f | Shell | 77 | 1 | cargo run --example nanopore_accuracy --release --features simd_avx2 -- "$@"
|
fa0a17fd222a0ff988628ea31bb640967732cb16cbf71b3c0123e6ee3731b2e0 | Shell | 77 | 2 | echo "Benchmark with in=../../lib/common"
./benchmark in=../../../lib/common
|
6885bc7daaceac999dcb5c9ecff3895957d63c95011ee11099dcbecff44513cf | Shell | 78 | 1 | medperf --gpus=1 mlcube run --mlcube ./mlcube_col1 --task train_initial_model
|
62d9eab318643ce1865fcf8861abb70ba628180da650d17568d41243546c3823 | Shell | 88 | 5 | #!/bin/bash
make clean
make html
rsync -arv build/html/ ../docs/
touch ../docs/.nojekyll |
22581c8f500b263bbd012b04171989622508c57b6e5aa9341bf056866b39cc09 | Shell | 89 | 1 | docker build --no-cache -t tffunck/brainbuilder:v.${1} -t tffunck/brainbuilder:latest .
|
24f562f8c46a44dc07037b5d63662cb37747993b473960c44b8fd9116e1aa7b1 | Shell | 92 | 2 | python3 -m pip install --user --upgrade setuptools wheel
python3 setup.py sdist bdist_wheel
|
03a22d694bb560331cf26eda22a803d7698ffcc8a2f3cb51470f001ddeef9255 | Shell | 97 | 2 | git clone https://github.com/mayukhmondal/ABC-DLS.git
snakemake --configfile config.yml -j 5 -kp |
8b412ca1ee749df93d55ef8fd84af77a2387ce8da0d3ebba9f5cfa9725c9d51b | Shell | 97 | 4 | #!/bin/sh
samtools view -@ ${1} -f ${2} ${3} | \
grep -v "uT:A:3" | samtools view -@ ${1} -bS - |
60396594c498d79aa1e957bed418012764c8cdc89b1a35d23e0e525af2732a12 | Shell | 98 | 2 | #!/bin/sh -e
git subtree pull --prefix lib/zstd https://github.com/facebook/zstd.git dev --squash
|
ec70ad7933ac1e8fad32aeaa780f4c2aed57bb50f2e416d3476f3206d00c6dca | Shell | 98 | 4 | #!/bin/bash
# Launch uWSGI
exec /home/env/bin/uwsgi --ini /home/scripts/docker/uwsgi-catmaid.ini
|
f3c822eb71c3e53ff6d701463ca380be30aab26b314ba4f895e08f05d0ae2c3a | Shell | 98 | 7 | #!/bin/bash
cd {{ directory }}
{{ command }} 2> proc.err 1> proc.out &
CMD_PID=$!
echo $CMD_PID
|
a2aec69dd816f352933d820e74a2b1e0542509f2455bd9d524f2278609369a0e | Shell | 100 | 2 | cargo test --all-targets --features simd_avx2 -- "$@"
cargo test --doc --features simd_avx2 -- "$@"
|
64e25a529544639af51d175777486d975e38902f4f5b0020780718cb4e366b55 | Shell | 101 | 4 | #!/usr/bin/env sh
set -e
./build/tools/caffe train --solver=examples/mnist/lenet_solver.prototxt $@
|
a16637f59dcaad0d024d78a936e754ced3a485772e11156d3aa26e6c810e1df3 | Shell | 104 | 3 | #!/usr/bin/env bash
cd /workspaces/medperf/server
bash ./setup-dev-server.sh < /dev/null &>server.log &
|
1d48e899ae5381811ebb11c12b128e762184277ec40295a87e1500c40db3f0b6 | Shell | 106 | 2 | #!/bin/sh -e
git subtree pull --prefix lib/libmarv git@github.com:steineggerlab/libmarv.git main --squash
|
8476d21651f83f97fa4b9ccb4363a83805b9b56c14125d560eb5919e8463e437 | Shell | 106 | 4 | #!/usr/bin/env sh
set -e
./build/tools/caffe train --solver=examples/mnist/lenet_solver_adam.prototxt $@
|
14f83d18e1e22dfdd3dc3441998274cbdf7874c3f471cdf7b7b93d711d04d2f5 | Shell | 107 | 2 | docker build -t mlcommons/medperf-cc-rano:0.0.0 -f Dockerfile .
docker push mlcommons/medperf-cc-rano:0.0.0 |
0a3ddfb9d4fb40a0021dc237940ebffc22fad9ce553ca1310ef0dfd052fd66d9 | Shell | 109 | 9 | #!/bin/bash
for i in {1..2}
do
for j in {1..3}
do
python sir_n_layers.py $i $j
done
done |
c287bf22360ef3e6e2914cb6390e3b0e72147fd658949ed0627166d6d161b924 | Shell | 111 | 2 | #!/bin/sh -e
git subtree pull --prefix lib/block-aligner https://github.com/Gyuuul2/block-aligner 3di --squash
|
28668e073f7ab241c786d0ef43e110b5bf6ce89a48f4a82f2db5922f652f2b6d | Shell | 112 | 2 | export LD_LIBRARY_PATH=/usr/local/nvidia/lib64:$LD_LIBRARY_PATH
python /project/benchmark/inference/infer.py $@
|
edcb38713e78cd13dd72d77fbc5947ae7a98f81eb6d1119bd5fa0ebb1adf8887 | Shell | 114 | 1 | CC=/usr/local/opt/llvm/bin/clang cargo run --example nanopore_bench_global --release --features simd_avx2 -- "$@"
|
5d530ce22f4e2cd4d20e41a5ac68b47d5706ebddbddc6bb47012488d02ab0bad | Shell | 115 | 5 | #!/usr/bin/env sh
set -e
./build/tools/caffe train \
--solver=examples/mnist/lenet_solver_rmsprop.prototxt $@
|
3a01e7823814140c1e4018b9e8b46d453f39c02f6e8eb023ab196249dabb9d63 | Shell | 117 | 5 | #!/usr/bin/env sh
set -e
./build/tools/caffe train \
--solver=examples/mnist/mnist_autoencoder_solver.prototxt $@
|
c9f5477b2f1a8fb124d457d692be73c12396d1c2eb35e6d034f09b9e12757bea | Shell | 117 | 2 | docker build -t mlcommons/medperf-cc-chestxray:0.0.0 -f Dockerfile .
docker push mlcommons/medperf-cc-chestxray:0.0.0 |
f1964e03dee706f5413c4b382a8bfcfa673dfee494663c225ed30953108243e2 | Shell | 117 | 5 | #!/usr/bin/env sh
set -e
./build/tools/caffe train \
--solver=models/bvlc_reference_caffenet/solver.prototxt $@
|
53bc39d19790dea1fd0dc6703af845f8f0893f05455fbc76d9b83168e1fc521b | Shell | 118 | 5 | #!/usr/bin/env sh
set -e
./build/tools/caffe train \
--solver=examples/mnist/lenet_consolidated_solver.prototxt $@
|
06d49f26c2df5538e8e8b9379d2f95faad4d3a2fe1bb87a6ddd9d516d73a7569 | Shell | 119 | 5 | #!/bin/bash
set -e
./build/tools/caffe train \
--solver=examples/mnist/mnist_autoencoder_solver_adagrad.prototxt $@
|
67028150b3ad3e229ab3d8e93e5067c6eb93218bc4677040711fe075b996b885 | Shell | 120 | 5 | #!/bin/bash
set -e
./build/tools/caffe train \
--solver=examples/mnist/mnist_autoencoder_solver_adadelta.prototxt $@
|
e4efdb6db2eadc5ae75709333f08633005563f5cc899a2d3f6b9cb04f736d755 | Shell | 120 | 5 | #!/bin/bash
set -e
./build/tools/caffe train \
--solver=examples/mnist/mnist_autoencoder_solver_nesterov.prototxt $@
|
73c33bbaae3841cc6e8fe3d48355cc4e6ccff5f1c2702fa81023a6678e079b21 | Shell | 121 | 2 | #!/bin/sh -e
git subtree pull --prefix lib/simde/simde https://github.com/simd-everywhere/simde-no-tests master --squash
|
9e513cdb43d697ce7a5a0e22e03d8cf11120703864c27e4d46ea3bbae7185a36 | Shell | 121 | 9 | #!/bin/bash
for i in {1..30}
do
for j in {1..5}
do
python sir_single_hidden_layer.py $i $j
done
done |
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