sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
57e542f1b5c48d8a201aaaaf57bbb0dfec06e76f2524c21c2166457789e5e2ac | Shell | 24 | 3 | #!/bin/bash
make clean
|
7b2e8f0e82b5cc53e555548fbb287eff998984dd975cdde7ddedfe583842dace | Shell | 25 | 2 | #!/bin/sh
autoreconf -is
|
0d5cf888e873a0e17faf74c6bb44f791e7f4db5318ea8e844f206d3d2a3782f3 | Shell | 27 | 1 | python -m pytest -v tests/
|
84e9bc8c9cc63fa809a3549fcbe0cee94108a77d3fca178b4771ddb3371add0d | Shell | 27 | 1 | # Link lib to pymllm's dir
|
cbf57ad938eace2e623dcb5b956396cb01e0adfe10945dc488c428dbe86b02c3 | Shell | 28 | 2 | #!/bin/sh
squeue -h -o "%A"
|
519441c0383c1c171545a9648cd8dd50589ff1b7f52e0623c6fa4d5f56508446 | Shell | 30 | 3 | #!/bin/bash
rm -Rf *~ .test*
|
6d6e6ab1d69966ac9e7f7da987c6f590179af07a0a9fa8522129a42d411ca8be | Shell | 36 | 5 | #!/bin/bash -x
rm info/*
rm out/*
|
81192267321e9a7eb9af0782c033e24e11edb9766685e4d8fe719a6146d1b24a | Shell | 37 | 3 | #!/bin/bash
rm -Rf *~ test test.log
|
6aafe610c2ba52c7b5e807b93079ea1fdf010a32d5d94f609ca73c273a1e6e25 | Shell | 38 | 3 | #!/bin/bash
rm -Rf *~ error test.log
|
dbf31246e1d1eb69becd3959db2afb78ec7e07ba25392cc002a844b94061a67e | Shell | 38 | 3 | #!/bin/sh
diff $1/res.dat $2/res.dat
|
30771419f5110eeafe6547ce946def1cd1aeda32725cd2dd6ae9912a07b16d46 | Shell | 40 | 3 | #!/bin/sh
cat $1/out | sed 's/cond://'
|
428335646f8f37e93dbb43ce1bcd8374c4f8d4bee535b18dd5cab7e4cdd2b003 | Shell | 40 | 3 | #!/bin/sh
rm -f test_fortran *.o *.csv
|
5e419182bcb7563478a883a00a4f01c79b115a4250410c658fdbc81210a782a4 | Shell | 40 | 3 | #!/bin/bash
morphology-workflows Clone
|
7d6bd97caf276a8aafc572c883b372ed61b34fa681a9a49eb36893023af6bb65 | Shell | 41 | 3 | #!/bin/bash
morphology_workflows Curate
|
fe91a0ae8dd21d1282f6b1f05ff7c3c6c4620c79849edfdcba5f232c37f02bea | Shell | 42 | 3 | #!sh
set -xe
$PYTHON setup.py sdist_conda
|
6996d4aac9669a980397d2742586774184fb35119dee9640ecd5fb06b7c17fd6 | Shell | 43 | 3 | #!/bin/bash
source activate asap
exec "$@"
|
589e825df2dcb53e139182cfa90463fb18b5735a437589b1e5d4265811699137 | Shell | 44 | 2 | # Install exprelev
$PYTHON setup.py install
|
0e1857c93a2a64a9781456a15f72b4e59186d3b72d98b7a6dbf464e5d1156134 | Shell | 45 | 3 | #!/bin/sh
OS=`uname`
./$OS/tMCimg sphere_seg
|
d4814843fe60cdaae8783b798ccddf85bdb98e21a13a86e049136ef54fbda1e5 | Shell | 46 | 3 | #!/bin/bash
rm -Rf ./*~ ./*.o ./test ./*.log
|
a243da834a1255ec830ac90f9fdf24f352fe6674cce2d642010bd37f2dd4148a | Shell | 49 | 5 | #!/bin/sh
test -d m4 || mkdir m4
autoreconf -i
|
3f1eb60806333e4fdf834191cf6d7dc94b04b265783c59b13fe6e71f229f7619 | Shell | 51 | 3 | #!/bin/bash
rm -Rf *~ archimedes dd.line test.log
|
5ea727b89a8b0e676e544198f8543fd82d966ce6a163fc58fa40d269900168ff | Shell | 52 | 3 | #!/bin/bash
rm -Rf *~ test test.log out_* *.o .*.o
|
dff266064f51f8dfbeafc6ff205f9d0894ec5aa974309e4dd56766ade7ed2b89 | Shell | 52 | 3 | #!/bin/sh
valgrind --tool=verrou $BIN_NAME >$1/out
|
fe9680a48b6dd4648a05f8e2cf74d5f2c3843d34f2559dac375f92ebc6f02f00 | Shell | 52 | 2 | #!/bin/sh
verificarlo-c -DPLATFORM='"linux"' test.c
|
a066b90b68008802b8d51bb2ff8c77f099f6609f1ffefdefe6ea8b25946387ee | Shell | 53 | 6 | #!/bin/bash
mkdir build
cd build
cmake ../
make -j8
|
c585a8793e341ed7356a30e8f500e3b0fe664241f56812f037418932b7b411f3 | Shell | 53 | 2 | python -m build
twine upload --skip-existing dist/*
|
7fa46d1644a11ea1abce6f465cab102ae7ad84ba746ab1bd676fcb548fbf0448 | Shell | 54 | 4 | #!/bin/bash
sed 's/^>.*transcript:\(.*\)\..*/>\1/'
|
353177ec1256b4f5053f46086f622272cbdc4616c8997e1c1e8de89984836d62 | Shell | 56 | 3 | #!/bin/bash
rm -Rf *.log *.o test *.ll .vfcwrapper* *~
|
7b9545a51599dffe8ec62bc4f545daed7ad286d6bbe622070bad2957e0cb1a00 | Shell | 56 | 3 | #!/bin/bash
rm -Rf *~ test.log *.ll *.o newton output*
|
06d1429f13e7c78a1f32198cc5bb65a349aa2a5e50dad039ca2ec12cc1dc478d | Shell | 57 | 2 | #!/bin/bash
rm -f libcompute.so *.o *.ll .vfcwrapper* *~
|
8732ed3d407bc66cce4b656c29d58b00146fafd208df8d68a63200102bcf9f4e | Shell | 57 | 3 | #!/bin/bash
rm -Rf *~ test.log *.ll .vfcwrapper* .test*
|
608c9b47b5ed8df23902d4bcc5c028d82026e45db891b09dc5607eebbce4e0fc | Shell | 58 | 3 | #!/bin/bash
rm -Rf *~ test_* *.ll .*.ll *.o .*.o log out
|
6cce3f47ee740f98e0c45823d5590960deea36dc6996c8c30c1f348bd23fcfef | Shell | 58 | 3 | #!/bin/bash
rm -f test_accuracy test_accuracy.o test.log
|
ab18490a88de6417032ec2a6977172aec8f493147971eb7bcdaeaadb6c211bbf | Shell | 58 | 3 | #!/bin/bash
rm -Rf *~ dd.line test.log unitTest *.ll *.o
|
d8725c3b056508e35b43dc3274d5abf37f3978b51edf703a79aa18dc89242590 | Shell | 58 | 1 | rm -Rf .vfcwrapper* *.ll *.o *.log error output test .*.o
|
068cee32c51e0905713810b4eacdbfe38b576aca8166ad7189cca9dd0422e4e5 | Shell | 59 | 3 | #!/bin/bash
exec uwsgi --ini cellphonedb.ini --log-master
|
72af8817f01a8daee9e45fbcf8a9dd24f85de3a7dbba41c40ecde10eaec3a41a | Shell | 59 | 3 | #!/bin/bash
rm -Rf *~ test.log test *.ll .vfcwrapper* *.o
|
69dbe4a5bf14c3f173c20fa64ed3004d0d1dd02775509f9ef448402757c0b425 | Shell | 60 | 3 | #!/bin/bash
rm -Rf *~ a.out test.log *.ll *.o .vfcwrapper*
|
a265de9ce04172f865bacf77447131ea942977429636c0af838b64bfd8ef65b7 | Shell | 60 | 3 | #!/bin/bash
rm -Rf *~ archimedes dd.line test.log *.o .*.o
|
44da6a745fa35e3f84d2b45b27f834ab8a0805c5e7e44bac500ca1c515141206 | Shell | 61 | 3 | #!/bin/bash
rm -Rf *~ run test.log *.ll .vfcwrapper* .test*
|
e0cb46c9a42fa86e591ef8d627f75ce3dd27b63df9df0544c244447162ea9b85 | Shell | 61 | 4 | #!/usr/bin/env bash
chmod +x nest
cp nest $HOME/.local/bin/
|
8417aa1b6bf85c0aae56b2c0a40e962b23f0e619096fa20837ad9759de71bff5 | Shell | 62 | 7 | #!/bin/sh
#$ -S /bin/bash
#$ -V
#$ -cwd
cd $1
shift
exec "$@"
|
b30d2501da44da1f4eee3c0f614396a450e2b24ec051ed106170b14d07b3dbf9 | Shell | 62 | 4 | #!/bin/bash
cp ../common/* .
bash run_test.sh distributed $1
|
04001f396a81faaeaf091d99f2687daaba7d998906d3873eec4e9d23afd7d3e4 | Shell | 63 | 1 | ../../envs/sbi/julia-1.6.7/bin/julia -p 20 parallel_simulate.jl |
d8a8d3ca18bf5c4276a3993003fef5f06dac3d1585e82701c7ccbf118697576f | Shell | 63 | 1 | python ../axon_projection/run.py config_clustering_example.cfg
|
7c52627d1c2aeca87c4d538db1a10a74b881b3c465db8c91bc9394ba3983bfaf | Shell | 64 | 2 | pip wheel -v -w dist .
pip install dist/*.whl --force-reinstall
|
057eb42cd96a694ae6b1f4bb75fe4d157e9ccd706492862ce991e5ab7387962e | Shell | 65 | 2 | python antifold/main.py \
--pdb_file data/pdbs/6y1l_imgt.pdb
|
529de973944dc5a86afe744210cfe484a45d3eaf26dcf7a061607d743b3631d0 | Shell | 65 | 3 | #!/bin/bash
rm -Rf *~ test.log *.ll *.so build/ test.c *.o .*.o
|
6e9dd7079092e48d96966110c21d8677a9da3167aeee6a0d017ef922debf554b | Shell | 65 | 3 | #!/bin/sh
rm -f test *.o *.vfcrun.h5 *.log *.ll .vfcwrapper* *~
|
7bc451d4216bda5eeae1ff27c60ae49b3d3e16c3331bbcd18a0368ce2342c281 | Shell | 65 | 3 | #!/bin/bash
rm -Rf *~ run test.log *.ll .vfcwrapper* .test* *.o
|
574970e8fdb7ad8e00e1fcf4cc2fbc208e5f58ba6a41704e0b4cee12a6eb637d | Shell | 67 | 3 | #!/bin/bash
kill -9 $(pgrep -f marmobox_listener.py) 2> /dev/null
|
3d6400c0613f6556b8599774d3cda69b41af3c3a5e7035fa33b2e2df147de9b8 | Shell | 68 | 2 | #!/bin/bash
cargo build --release --target=x86_64-unknown-linux-musl |
3dd9958fcc83ec19675160b20976235a3b1533733b7dd6ede8471ab42e96b79c | Shell | 68 | 2 | #!/bin/bash
rm -rf test test_dlopen *.o runtime.log .vfcwrapper* *~
|
446599628ee2748b838a3b9251675490f41b951edb5942adb4a0f23dae5fef4c | Shell | 68 | 3 | #!/bin/bash
rm -Rf *~ filtered.txt inclusion.txt out test test.log
|
7946b5b022be525cd708a7ecf61401aa0b37cad967a3ab7fe569894df9d4ed67 | Shell | 69 | 4 | #!/bin/bash
export OMP_NUM_THREADS=1
morphology-workflows Transform
|
936b815cfc02efb3850078c9fd9b47456bb4a2910fc2da44bc5be2b1c4246797 | Shell | 70 | 3 | #!/bin/bash
rm -Rf *~ .objects .bin .results *.ll *.bc *.vfcwrapper*
|
13586e1f7399cd7c853348428009c75270c0c0e7426b0e6566f01a2d58f35dcf | Shell | 72 | 3 | #!/bin/bash
rm -Rf log.* test_* *.o test *.ll .vfcwrapper* *~ test.log
|
3b01bafb6e43529e8c0d4a91c4ab444de5e83a641d00e2e544416bd2a5f23478 | Shell | 72 | 3 | #!/bin/bash
rm -f *.o *.ll* *.log test-* diff .vfcwrapper* *~ test.log
|
6201e61bde801fae0b0491b05b4bec76301f38bd1ec5fae57535c43d1e179020 | Shell | 72 | 3 | #!/bin/bash
rm -Rf *~ output tchebychev test.log *.ll .vfcwrapper* *.o
|
a173df92bfe64965357f78086ad2a0097ac50e47087e1834a6fd796bde5a3cbf | Shell | 74 | 3 | #!/bin/bash
rm -Rf *~ *.log output1 output2 test_* *.ll *.o .vfcwrapper*
|
0a221dd1a5dd8302ffbd5b7b66539eac70a6613100157bc4f091ae05759a1ae4 | Shell | 75 | 3 | #!/bin/bash
rm -Rf *~ output.txt test.log test_float test_double *.o .*.o
|
ca367a5166f057c777f3a1f20a7cc170182c56ec93d7e1a4081a563503bdfa2d | Shell | 75 | 3 | #!/bin/bash
rm -Rf *~ exclusion.txt operations*.txt out test test.log *.o
|
87872f4f29a60902e2e63a334df4592591c31153d06a54b5a86914b5c0f77663 | Shell | 76 | 4 | if [ ! -e MOGEN ]
then
git clone https://github.com/BDM-Lab/MOGEN.git
fi
|
3879a22a3f96ac03903600da219ebe77c21e83516db5135cc7395c2bf751aa54 | Shell | 78 | 4 | #!/bin/bash
. /opt/conda/etc/profile.d/conda.sh
conda activate py37
exec "$@"
|
423a37e68da0dfcfa63889e018a27362ebad5af50703b5d1fcaa34c4e3bb0bd7 | Shell | 78 | 3 | #!/bin/sh
valgrind --tool=verrou ./checkRoundingNative valgrind > $1/out.std
|
8821ae6e7ad581cd5043c161077588b5ebb183fb9f057cb812b74c2306e41cd6 | Shell | 78 | 4 | #!/bin/bash
. /opt/conda/etc/profile.d/conda.sh
conda activate py36
exec "$@"
|
fb5217815f6e6471da37d4f7a17c389553d8fb10d84374b5ea0195b6c4476130 | Shell | 78 | 2 | #!/bin/bash
rm -rf *.o *.out *.log *.pdf *.png *.gif *.txt newton __pycache__
|
324ef973b92ec4683af3b6e0373d711c496e9cdac48a208b5cdab206c9f82d52 | Shell | 79 | 3 | #!/bin/bash
rm -Rf *~ output test test.log x0.dat *.pdf *.ll *.o .vfcwrapper*
|
b93eca28f63c685c4b12754d2494c431d028646dfc0dec062bf99c7e69794049 | Shell | 79 | 4 | #!/bin/sh
cat $1/out.std | grep "testFma<float>" |cut -f 4 | cut -d " " -f 2
|
c64305748a5e94ea2f7b9f123c3fceec89888eb2124fd83d9fe36b77bd1c87b3 | Shell | 79 | 3 | #!/bin/bash
rm -Rf *~ output* test test.log *.ll *.o .vfcwrapper* .test* .*.o
|
3f3aec5a55aa895b127a924fc38209ac4c4929c3a1b8732dd002e797398134ea | Shell | 80 | 3 | #!/bin/bash
valgrind --trace-children=yes --tool=verrou ./dot.py > $1/out 2>&1
|
923258ab8d9dd8b033fb6550d1ef907aa18826f6697daae5f4b15bdd55dc4844 | Shell | 80 | 3 | #!/bin/bash
rm -Rf *~ log.debug.binary ref.debug.binary test test.log *.o .*.o
|
2b01adb6d20ca1a6eb9720066dba9a9142b6b26db559ee8acb4745b1d5b0d9e1 | Shell | 81 | 4 | #!/usr/bin/env bash
echo "Rebind development Scilpy to Python"
pip install -e .
|
72046e5161490f559948a3f9587169457b324ca6e03e72bf7084ef71febcfe05 | Shell | 81 | 3 | #!/bin/bash
rm -Rf *~ output1 output2 test_{1,2} test.log *.o *.ll .vfcwrapper*
|
7a02983e2f420484ed2ccb0caf3f6443e20afa3d792b6488c575afa677dca017 | Shell | 81 | 3 | #!/bin/bash
rm -Rf *~ test test-O2 test.log *.o *.ll *.prof .vfcwrapper* .test*
|
6e76ab406ba35f6ff0886cff2123144b6bc80b6a88bad4078229c97ad74b6755 | Shell | 84 | 1 | python launcher_scripts/run_from_config.py configs/neims_gnn/gnn_baseline_nist.yaml
|
99362de28d7a9edcf1b48f438375f69368c3e69e26de8dbc47a0d6ea67fb338b | Shell | 84 | 1 | python launcher_scripts/run_from_config.py configs/neims_ffn/ffn_baseline_nist.yaml
|
13db4fbd2f32aef3244839a8c68d68d490c11a2090aebd01750a44fcdf02c328 | Shell | 85 | 3 | for QL in {1..6};do
python e2e_harsmart_ground_truth_speculative.py --QL $QL
done |
892d491ec3946453087cd9790b8ab6a966f35ac627cf8fd2deb5a5499d89987b | Shell | 85 | 1 | python launcher_scripts/run_from_config.py configs/autoregr/autoregr_train_nist.yaml
|
8a6368d900d72b9be2171d8b2642c68a31128dbd6a6d1b89383347aca5c8c1b5 | Shell | 85 | 1 | python launcher_scripts/run_from_config.py configs/scarf/scarf_inten_train_nist.yaml
|
ebc99f52ad3fafe7c923ddafb0308a0d06ae4a3f2257cc6eede4e7d13a704ac9 | Shell | 85 | 3 | for QL in {1..24};do
python e2e_flicker_ground_truth_speculative.py --QL $QL
done |
56ef40dbbc09e81c3108c307b039f0c03d4396c79f229293ead8b98ec2a0218e | Shell | 86 | 3 | #!/bin/bash
rm -Rf *~ log* test test.log test_options_* *.ll *.o .vfcwrapper* .test*
|
92cfd1b296187bd4482e3974d05791d4825b39a205e1358a178d93dfb04138b3 | Shell | 87 | 3 | oat posidet hsv raw pos &
sleep 1
time oat frameserve test raw -f $1 -c test.toml test
|
a6877153f93f88b648b3bf325ae204cb25cf5baf856bb63d47cd0cd29f20e411 | Shell | 87 | 1 | python launcher_scripts/run_from_config.py configs/3dmolms/molnetms_baseline_nist.yaml
|
0f88ff7cebaf1f253ad7bc3395606b3ee788c4cd1a377826509c4c6ffc318ec4 | Shell | 88 | 3 | oat posidet diff raw pos &
sleep 1
time oat frameserve test raw -f $1 -c test.toml test
|
2c22a48378130d4d7d8b4eff076ef266f2ea3e15217120f0b2a5c758bd0ad993 | Shell | 88 | 1 | python launcher_scripts/run_from_config.py configs/iceberg/nist23/dag_train_nist23.yaml
|
49c46084c1079ae0cde06c405b2e51b1dcd4dcf51704c882ce668a4a72470fa9 | Shell | 88 | 5 | #!/bin/bash
valgrind --tool=verrou --rounding-mode=random ./mainTime > $1/res.out
|
5cbdbe42f2eb516b2985f2470f559258975e20b191df88a82dc8016f2456fea0 | Shell | 88 | 3 | #!/bin/bash
rm -Rf *~ test.log time NPB3.0-SER/CG/npbparams.h NPB3.0-SER/sys/setparams
|
a5f75004a9adc66d9432506d24f3bde85cf51864fed9374a9dbeb7b4ec3a3bff | Shell | 88 | 1 | python launcher_scripts/run_from_config.py configs/iceberg/nist20/dag_train_nist20.yaml
|
28175c02b493c0f983d1b3aff9ab0408e7635a6113facd9f62a6d2c66c24e52d | Shell | 90 | 3 | oat framefilt bsub raw flt &
sleep 1
time oat frameserve test raw -f $1 -c test.toml test
|
37cf68899b5fc73fbf15a3e41b0da3df51f2f63d1a3b46b4b0656c482f3218c4 | Shell | 90 | 3 | yapf -r -i mmdet/ configs/ tests/ tools/
isort -rc mmdet/ configs/ tests/ tools/
flake8 .
|
61cd56b8b5dd65effc80278d3a4be60a067e6bc50351f2532a0a06eb22cb0b03 | Shell | 90 | 3 | #!/bin/sh
snakemake --cores all --resources pdfReport=1 --resources gpu=1 --use-conda $*
|
c0985c0352961c53fa1da475862f0dd5cda60365214b28faf29847c14f929673 | Shell | 90 | 1 | python launcher_scripts/run_from_config.py configs/graff_ms/graff_ms_baseline_nist20.yaml
|
272100ceed7fdb017c547d4019fc051d096d3182f2eaf6ff5c8b9e12cd3d710b | Shell | 91 | 3 | oat framefilt mog raw flt &
sleep 100
time oat frameserve test raw -f $1 -c test.toml test
|
7f35e59cfcd5535725c9bd81a6f2831ab26f98d3ead3cbb75216088bde2508fc | Shell | 91 | 2 | #!/bin/sh
sacct --format=User,JobID,account,Timelimit,elapsed,ReqMem,MaxRss,ExitCode -j $1
|
f5aa5e75dcda901f7bb5d62a7032d00141d52423e21c0cdd2e3f1f0e40392034 | Shell | 91 | 3 | for QL in {1..32};do
python e2e_flicker_ground_truth_speculative_quick.py --QL $QL
done |
13548047b797ea433650c015139dda52c4b2938ab120ebdd768646c967503844 | Shell | 94 | 3 | #!/bin/sh
rsem-prepare-reference -gtf "GTF-File" "DNA-Toplevel-Fasta" "RSEM-Index-Folder"
|
c4fda977fb35b68e8551dea89621a72f588e89c76a8c35fb84d71d80def2d5a6 | Shell | 94 | 1 | python launcher_scripts/run_from_config.py configs/massformer/massformer_baseline_nist20.yaml
|
ce31e737db7b4116f39d74679df5fc22de0198e2a74af58bde0bdc9b88a6e2e7 | Shell | 95 | 1 | python launcher_scripts/run_from_config.py configs/iceberg/msg_all/dag_train_msg_known_ce.yaml
|
4bed212e3c294dc710df52ec03e6ddc699e49d1240e6b1a8bb7a51cb444f35a1 | Shell | 96 | 2 | python run_scripts/marason/run_retrieval_msg.py
python run_scripts/marason/run_retrieval_nist.py |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.