sha256 stringlengths 64 64 | language stringclasses 27
values | size int32 1 491k | lines int32 1 21.8k | content stringlengths 1 200k |
|---|---|---|---|---|
92a4688d57b5378e5b55a631c5b9b3daedcaf8d8be0b9b8f1f3d27ab80c735ff | Shell | 4,425 | 116 | #!/bin/bash
# Tests for the PRISM interflop backend.
#
# Validates:
# 1. VFC_BACKENDS="libinterflop_prism.so --precision-binary32 P32
# --precision-binary64 P64"
# sets the PRISM virtual precision at startup.
# 2. interflop_call(INTERFLOP_SET_PRECISION_BINARY32/64, V)
#... |
468b4fb4d138c464d0cce4ed1e5670561b3efc09e49be70a073112bc3b7b2653 | Shell | 4,426 | 123 | #!/bin/bash
#: Title : test_taccbvp
#: Date : 2023-03-14
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../taccbvp
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"... |
bfa916e7875d21346bd33773a988aae9b52ae72af919aea3e6928f044a4aa747 | Shell | 4,444 | 144 | #!/bin/bash
#: Title : test_ana_ehdr
#: Date : 2023-06-30
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../ana_ehdr
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
f26ddcbb96e4638d6bbc5152209e0e6317d0f7bd4652e85519e790b46fe572b1 | Shell | 4,445 | 104 | #!/usr/bin/bash
# ==============================================================================
# SCRIPT INFORMATION:
# ==============================================================================
# SCRIPT: PARALLELIZE BIDS CONVERSION USING HEUDICONV ON THE MPIB CLUSTER
# PROJECT NAME: SFGPI
# WRITTEN BY LENNART WIT... |
642008992756a709923366e5700411ca8c4d5fb1cad3e7d3d86c40c6499ae4fe | Shell | 4,511 | 156 | #!/bin/bash
#: Title : test_sifisot
#: Date : 2023-06-29
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../sifisot
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"... |
af2d5db74491f67051b26918f68e7949570c3a75a5d384550fc68fe43899c2ce | Shell | 4,518 | 136 | #!/bin/bash
#: Title : test_e63emhdr
#: Date : 2017-03-05
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../e63emhdr
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
d90c6b7e27553415662801dfda89def071f35d63cb84265b3b1879b074a84493 | Shell | 4,534 | 143 | #!/bin/bash
#: Title : test_fit_dexp
#: Date : 2020-01-22
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../fit_dexp
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
3f6786e7f47debb2da23c86daac97c15f163ad7a413254bae91c626239feb0a0 | Shell | 4,537 | 95 | # @author:alexolza
# This script reproduces all the figures from the paper
# "Domain Adaptation-Enhanced Searchlight: Enabling brain decoding from visual perception to mental imagery" (Olza A., Soto D., Santana R., 2024).
# The real experimentation was heavily parallelized.
echo "Reproducing Domain Adaptation-Enhanc... |
004c7af6b2fa94ef0e7578843e266a0506861c85cb23a645976bfcfe8b26988d | Shell | 4,559 | 123 | #!/bin/bash
#
# Segment spinal cord from T2w sag for sci-zurich dataset
#
# Usage:
# sct_run_batch -script segment_sc_zurich.sh -path-data <PATH-TO-DATASET> -path-output <PATH-TO-OUTPUT> -jobs <num-cpu-cores>
#
# Manual labels are located under /derivatives/labels directory.
#
# The following global variables are r... |
7665e107d1944093087100d15c1172c52e7968bc0c0f45c3fdce90d559e32d60 | Shell | 4,581 | 156 | #!/bin/bash
#: Title : test_taccuty
#: Date : 2023-06-29
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../taccuty
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"... |
e796a7806d33aaa64a1e47ccf3a16c8222fd0ef0a04591df10c4042a30945901 | Shell | 4,587 | 152 | #!/bin/bash
#: Title : test_imgslim
#: Date : 2023-06-29
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../imgslim
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"... |
fbaa818c8d1f395f0de3454e670a98db276f23a4fe6c91cea0a5a62f6e75be1e | Shell | 4,598 | 159 | #!/bin/bash
# export PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python
PYTEST_OPTS=
RUN_DOCTEST=false
RUN_MYPY=false
RUN_PYTEST=false
RUN_PYTYPE=false
GH_VENV=false
for flag in "$@"; do
case $flag in
--with-cov)
PYTEST_OPTS+="--cov=flax --cov-report=xml --cov-report=term --cov-config=pyproject.toml"
;;
--help)
... |
fca80a1e01302fcec6254ab439a340d862a9ac5adea7ed9a18811067d03e94dc | Shell | 4,623 | 151 | #!/bin/bash
#: Title : test_imglkup
#: Date : 2023-06-29
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
#: Todo : Test option -dynamic.
# Set the name of executable to test
PROGRAM=../../imglkup
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: ... |
797243e03c960f6dcbbc28ad5ceaebd8b8ca59d7b8813fb63be8e1f373c55577 | Shell | 4,663 | 89 | #!/bin/bash
# Finishes FS recon-all -autorecon1 and -autorecon2-wm pipelines with some adjustments from FS 7.3
fp=${1}
ifp=${2}
sub=${3}
cd ${fp}/mri
# Resumes -autorecon1 pipeline using iFS files (incomplete because we already have many iFS files that can be used instead)
mri_nu_correct.mni --i orig.mgz --o nu... |
3ac14c746449183e24ee03a226f60bfc0f08acf164ad38d5b43efcdd5fd2fc52 | Shell | 4,668 | 182 | #!/bin/bash
# This script builds portable pLannotate binaries using the Holy build box environment
# options:
# -b|-bits|--bits: 32 for 32 bits build (default 64)
# -d|-builddir|--builddir: top directory to build external software in (default ~/build/bin-$arch)
# -a|-all|--all: if 1 (default) all binaries are (re)buil... |
90eacd2fe5faece16dd30255278c9d8e5a7b53ff7c86fc4b620cacdf123a3a12 | Shell | 4,670 | 143 | #!/bin/bash
#: Title : test_b2rbc
#: Date : 2014-10-19
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../b2rbc
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"
... |
88e1b91e29dc4cc03cce71f5596d1034b51185bcb4fdd73d7d359c20caa04114 | Shell | 4,675 | 150 | #!/bin/bash
#: Title : test_simboxes
#: Date : 2016-10-25
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../simboxes
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
3bc31972db2a50a5e3b63bbd7bbbc7e95e6d55ec0eeaed01b307edf0aa848e86 | Shell | 4,700 | 81 | #!/bin/bash
# C. Cocuzza 2023
path_to_opts_script=/gpfs/milgram/project/holmes/cvc23/ClinicalNetDynamics/docs/scripts/HCP_Scripts_StepWise/
source ${path_to_opts_script}opts_newPipe.shlib # command line option functions
subj=`opts_GetOpt1 "--subj" $@`
# Options for below: restFix_SingleRun, restFix_MultiRun_All, res... |
bea38164c98762691201c68aaa7053daa974ec05446ec97efe58612a7d3a87e2 | Shell | 4,723 | 137 | #!/bin/bash
#: Title : test_fit_frtm
#: Date : 2022-03-29
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../fit_frtm
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
2a827e278e8ef9c0fcf0ce8ecb7187a4eef52b959a74d94b669f5eaa47701b80 | Shell | 4,748 | 146 | #!/bin/bash
#: Title : test_simiart
#: Date : 2022-02-19
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../simiart
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"... |
8d1b6a5796116bf89cba13b2e8f3ffe88a4d9b6f4392dd35afc08463caba672f | Shell | 4,788 | 182 | #!/bin/bash
# This script builds portable annotsv binaries using the Holy build box environment
# options:
# -b|-bits|--bits: 32 for 32 bits build (default 64)
# -d|-builddir|--builddir: top directory to build external software in (default ~/build/bin-$arch)
# -a|-all|--all: if 1 (default) all binaries are (re)build, ... |
2f1d3f7cf3870089314508621a6457b741febda05ab5dceed4cee8feccf56651 | Shell | 4,797 | 173 | #!/bin/bash
#: Title : test_halflife
#: Date : 2023-06-29
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../halflife
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
e493e725b3021c64520e83587545da33955f39bcd52c4dea9cbf93a1fd0608e0 | Shell | 4,804 | 180 | #!/bin/bash
#: Title : test_taccross
#: Date : 2026-09-16
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../taccross
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
82363c2ae369de18d334fc4bd2c9a38a1d64c0bc780fb812550994343f267a95 | Shell | 4,848 | 126 | #!/bin/bash
#
# Generate QCs for T2w images:
# - sagittal lesion QC
# - single slice sagittal spinal cord QC (to check FOV coverage (C/Th/L))
#
# Dependencies (versions):
# - SCT 6.0 and higher
#
# Usage:
# sct_run_batch -script generate_qc.sh -path-data <PATH-TO-DATASET> -path-output <PATH-TO-OUTPUT> -jobs <nu... |
16031f01983dfaac0f3540fdc33c81d276c60942789164ca620cced1ebc2826f | Shell | 4,854 | 128 | #!/usr/bin/bash
# ==============================================================================
# SCRIPT INFORMATION:
# ==============================================================================
# SCRIPT: CREATE PARTICIPANT-LEVEL MRIQC REPORTS FOR A BIDS-STRUCTURED DATASET
# PROJECT: SFGPI
# WRITTEN BY LENNART WIT... |
376267cb2fba554b416a946e36c713414072a10b862c70e20d4454b89066e11b | Shell | 4,920 | 138 | #!/bin/bash
# called by main routing function (see 01_qbatch_subcall.sh)
# Calls individual functions in micapipe ($MICAPIPE/functions)
#
# Inputs:
# $1 : subject tag {01, 02, ..., 30}
# $2 : FUNC_ID indicating which function from micapipe to call
# $3 : Session #
#
# NOTES:
# 1. nocleanup flag may not be desireabl... |
914eb0f30e7399637f13f86292a57f53908eb4aa12cec2af01bd6cfd9a9441d5 | Shell | 4,922 | 153 | #!/bin/bash
#: Title : test_fit_ratf
#: Date : 2023-06-29
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../fit_ratf
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
fc206107f8bbe9c34980f6481708015bdbad7f3e26fd7ab0504d581b9685d064 | Shell | 4,961 | 181 | #!/bin/bash
# This script builds portable strelka binaries using the Holy build box environment
# options:
# -b|-bits|--bits: 32 for 32 bits build (default 64)
# -d|-builddir|--builddir: top directory to build external software in (default ~/build/bin-$arch)
# -a|-all|--all: if 1 (default) all binaries are (re)build, ... |
67017a677829cf83ecf4245e3c84bf5b2ae1248280ac9205a57af0961843e66a | Shell | 4,974 | 116 |
# this is the process of uploading the updated models to s3. As I can't upload them directly to the correct orgs, this script shows how this is done
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in comp... |
db2fdd13f6799ec71671385a2d9b08957aa6f24f27dcb43ca11785adbcea7d20 | Shell | 4,998 | 103 | #!/bin/sh -e
#---
# Download files
#---
# wget ftp://ftp.ncbi.nlm.nih.gov/genomes/Ovis_aries/GFF/ref_Oar_v3.1_top_level.gff3.gz
#
# wget ftp://ftp.ncbi.nlm.nih.gov/genomes/Ovis_aries/Assembled_chromosomes/seq/oar_ref_Oar_v3.1_chr1.fa.gz
# wget ftp://ftp.ncbi.nlm.nih.gov/genomes/Ovis_aries/Assembled_chromosomes/seq/o... |
531c7c0bb5bcab1bd479cc23ea74161dc305205586fba7bf13f922fa599a5461 | Shell | 5,034 | 112 | #!/bin/bash
set -beEu -o pipefail
export srcDir="$HOME/kent/src/hg/gar"
rsync -aP qateam@hgdownload.soe.ucsc.edu:/mirrordata/hubs/UCSC_GI.assemblyHubList.txt ./ \
> /dev/null 2>&1
### starting html page output ##############################################
printf "<!DOCTYPE HTML 4.01 Transitional>
<!--#set var='T... |
70dca25664541969ab7873cb8dc7876e07ee4b4aedb69215a9d7d18335a87322 | Shell | 5,060 | 84 | #!/bin/bash
#SBATCH -A p20023
#SBATCH -p short
#SBATCH -N 1
#SBATCH -n 2
#SBATCH -t 04:00:00
#SBATCH --mem=20G
#SBATCH --mail-user=viriyakeo2023@u.northwestern.edu
#SBATCH --mail-type=END,FAIL
#SBATCH --job-name=z_apa
#SBATCH -o "%x.o%j"
source ~/.bashrc
conda activate peakachu
h="/projects/b1126/Viriya/hic/lucap/"
... |
bdb13f7617a6884542b452581f3abfafa9bdcd0a7de0672c5d0a21336ca70770 | Shell | 5,062 | 144 | #!/bin/bash
#: Title : test_tacln
#: Date : 2026-09-15
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../tacln
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"
... |
7fe98e004141a90c9c010ed8c1001f8221610b4b4950e000a7d18f231968635f | Shell | 5,066 | 84 | #!/bin/bash
#SBATCH -A p20023
#SBATCH -p short
#SBATCH -N 1
#SBATCH -n 2
#SBATCH -t 04:00:00
#SBATCH --mem=20G
#SBATCH --mail-user=viriyakeo2023@u.northwestern.edu
#SBATCH --mail-type=END,FAIL
#SBATCH --job-name=z_apa
#SBATCH -o "%x.o%j"
source ~/.bashrc
conda activate peakachu
h="/projects/b1126/Viriya/hic/lucap/"
... |
61657b38783941657625de5053f8b7f7a16d7a7b99b301f3afabe533cd1c96d0 | Shell | 5,113 | 157 | #!/bin/bash
set -eu
base0="/FastSSD1/Athena/francesca_202203/out_filter647_01" #location: ${sample}/align"
samples=("340258_2LD_5" "840298_52_P_20" "340299_35_22_HD" "840298_16_P_17" "840298_50_P_19" "840295_42_HD" "840295_40_HD_27" "840258_3_LD_6" "454371_17_LD_7")
# Gaussian smoothing ``radius''
# 3 for segment... |
e0e36294e724eeb02e6a8bd59bf7f8d76976aee1b1da7fb9cf45ee05d96d4b3e | Shell | 5,114 | 121 | #!/usr/bin/bash
# ==============================================================================
# SCRIPT INFORMATION:
# ==============================================================================
# SCRIPT: RUN FMRIPREP ON THE MPIB CLUSTER (TARDIS)
# PROJECT: SFGPI
# WRITTEN BY LENNART WITTKUHN 2020, ADAPTED BY SAM ... |
1791b1a20765c2d8f4189aa3e72ae517681cc1419d22e44a10d2641302875c2a | Shell | 5,122 | 154 | #!/bin/bash
#: Title : test_fitvb
#: Date : 2019-09-16
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../fitvb
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"
... |
641bee54a431648f3cfa0bf45d1b153b7154aab50e90a41709e3cbccdde06cd1 | Shell | 5,147 | 151 | #!/bin/bash
#: Title : test_fit_xexp
#: Date : 2019-10-03
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../fit_xexp
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
b35e2da0e56b2daaca30d9da65d745902fd4733f9f379079c7d4016855b93087 | Shell | 5,176 | 152 | #!/bin/bash
#: Title : test_b2ptrap
#: Date : 2023-03-12
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../b2ptrap
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"... |
b1e4c1bf8cda811e04d42022556a6ca3f02f0cc3da7e00bdd1a0bf2fb992c5a6 | Shell | 5,180 | 172 | #!/bin/bash
set -e
# Test that verificarlo wrapper scripts properly preserve argument quoting
# This addresses GitHub issue #355
source ../paths.sh
# Function to test argument passing
test_wrapper() {
local wrapper=$1
local linker=$2
local test_file=$3
echo "Testing $wrapper"
# Test 1: Macro de... |
4c1a3157c156bef434054ca5e493044d21b1bd69668050cce48c66080feb9bd7 | Shell | 5,185 | 170 | #!/bin/sh
# the next line restarts using tclsh \
exec cg source "$0" "$@"
# Script to download and prepare all reference databases (including genome) for mm10
# call using
# makedbs_mm10.sh ?options? ?dest? ?webcache?
# where
# * dest: the directory where the reference databases will be installed (default /complgen/r... |
52dcd4056c3850d6bb8bd039e36a959c75987bb747b3d0635412a4d1fb472118 | Shell | 5,244 | 132 | #!/bin/bash
# Copyright 2017 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by... |
aa6c11a503199306ae4813c4342d3e530f7b901f77480d634ca6186eb4df5663 | Shell | 5,252 | 101 | #!/bin/bash
#
# Main routing point to call all processing-related functions for all subjects & sessions
# Change the FUNC_ID variable to choose your function.
# All function calls are passed through the cluster (qbatch)
#
# Logs are stored in $log_dir.
# Additional option to gauge resource needs using /usr/bin/time (se... |
d7c895c452fac79c1407f4012db92eecb700858bd95ecd9c396d34a6ca73d849 | Shell | 5,326 | 174 | #!/bin/bash
#: Title : test_inpstart
#: Date : 2023-06-29
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../inpstart
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
e04b8a57b069b5c718da1bce882e678550702c0285bcb553e9c04f41faadf4a8 | Shell | 5,328 | 159 | #!/bin/bash
#: Title : test_imgratio
#: Date : 2019-06-26
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../imgratio
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
7d19cf5213cee35c134e17fbffb597a40527606a6801f223ff210613bd5f531a | Shell | 5,329 | 71 | #apt-get install -y apt-transport-https software-properties-common build-essential
#sh -c 'echo "deb http://cran.rstudio.com/bin/linux/ubuntu trusty/" >> /etc/apt/sources.list'
#gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
#gpg -a --export E084DAB9 | apt-key add -
#add-apt-repository -r 'deb https://cloud.... |
0991a49fe1fa648bec0489a358118952650a6ed5c692b2abd3d1fee7eb3e697f | Shell | 5,337 | 153 | #!/bin/bash
#
# Segment spinal cord and generate QC.
# Note: Since automatic SC segmentation fails at the lesion, we add the SCI lesion to the segmentation (to save time
# with manual corrections)
#
# Dependencies (versions):
# - SCT (5.8)
#
# Usage:
# sct_run_batch -script preprocessing/preprocess_data_sct-paris.sh -p... |
3ba79e84f96d993f3d7eed349dde9450aaab43b216fb7648824a9ff51c44d93f | Shell | 5,346 | 173 | #!/bin/sh
# the next line restarts using tclsh \
exec cg source "$0" "$@"
# Script to download and prepare all reference databases (including genome) for mm39
# call using
# makedbs_mm39.sh ?options? ?dest? ?webcache?
# where
# * dest: the directory where the reference databases will be installed (default /complgen/r... |
ae758736657a9c686750f23cfdc120c79da7c689e8ef09a3733d5a4c06c024f5 | Shell | 5,359 | 170 | #!/bin/bash
#: Title : test_flat2nii
#: Date : 2023-08-18
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../flat2nii
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
f07979c8e25dfa4be6950e26491b9ffb57817e628d99126ddda4be25f68bc952 | Shell | 5,366 | 167 | #!/bin/bash
#: Title : test_sim_o2bl
#: Date : 2023-06-29
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../sim_o2bl
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
0d944f6acb8c4484e0fbad64d79813fd8316a98b682ffcbdb9da0977203bc019 | Shell | 5,379 | 175 | #!/bin/bash
#******************************************************************************
#* File: make-README.sh
#* Author: Jon Newman <jpnewman snail mit dot edu>
#*
#* Copyright (c) Jon Newman (jpnewman snail mit dot edu)
#* All right reserved.
#* This file is part of the Oat project.
#* This is free software: ... |
28ef4bb6de299a44e40e21c3790c6c345a5ab2ca8e942c27584ad983aad53929 | Shell | 5,384 | 101 | #!/bin/bash
#
# Main routing point to call all processing-related functions for all subjects & sessions
# Change the FUNC_ID variable to choose your function.
# All function calls are passed through the cluster (qbatch)
#
# Logs are stored in $log_dir.
# Additional option to gauge resource needs using /usr/bin/time (se... |
d126eda057f4029a0704a13008fb1cb24833627fd1587fb623f9fd876b9a2e4d | Shell | 5,402 | 149 | #!/usr/bin/env bash
# =============================================================================
# 07_pipeline.sh — Full Analysis Pipeline
# =============================================================================
# Runs several pipeline examples (A–F) in one script: QC, harmonize, liftover, plot, extract.
# Ea... |
75d55076f3fc6796123d48951c4f848369d60177a653f8f1759c8b7b423bdfc7 | Shell | 5,407 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-32 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/A1_orca_min_hessian_... |
1b32c0cdaf74ae7c66ed95029fc3181549ed0afa93cd375c9acba81b620302b4 | Shell | 5,408 | 160 | #!/bin/bash
#: Title : test_imgidpvc
#: Date : 2019-12-08
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../imgidpvc
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
2e80df9a5a0f50b49720cf7a5f69db277b891cea113155a2989c253ab693e951 | Shell | 5,408 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-32 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/A1_orca_min_hessian_... |
773b72e614cd298163688bc52361ab40a1b4a75639a6ba3c5a8aea5701164cee | Shell | 5,412 | 159 | #!/bin/bash
# 03_test_installation.sh
source 02_constants.sh
echo "$color What would you like to test? Please choose an option by typing the number:"
echo "1. local conda installation (default)"
echo "2. docker image"
echo "3. singularity image"
echo "Press Enter to use default [1] or type your choice:$reset"
read -p ... |
dbe8a93362e3127bedca6871a2903a2df4bbddc7c1c1545d0ebf3cfecfc0bf3e | Shell | 5,416 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-53 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/B1_orca_min_hessian_... |
cf3876702f385363131fa8cd4821f61675f7202a119db6754e353c62c129ec1a | Shell | 5,417 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-53 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/B1_orca_min_hessian_... |
514ebf9c70349acb831e6fa0be9cfc0f7f1ef1844c1f5069e6dbd6fd3268f6f9 | Shell | 5,427 | 39 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-261 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/D7_orca_min_hessian... |
802e160c93b53e3e8c0a95ff005e0f765c3578cf78dea21d2741815cefac846d | Shell | 5,427 | 39 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-261 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/D7_orca_min_hessian... |
3c40a1edbeed9cd7d75012e7207a6728675e44ce0cdd74b644fc95aae9480521 | Shell | 5,428 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-53 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/B1_orca_min_hessian_n... |
8cf9b148a7f9c4eef1eb89297342cb27dcf9fc35300cb33bb6c73e10f2323a35 | Shell | 5,436 | 39 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-261 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/D7_orca_min_hessian_... |
2c7ec61c3aec700a0bafa177885aa698a842a6ea20af05e4386ab4b8052d5c11 | Shell | 5,437 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-32%5 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/A1_orca_min_hessian... |
9baded356f905d613ca95dcfa7ea6a51dac798db8c7e43772d189a006b1d1491 | Shell | 5,461 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-54 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C1_orca_min_hessian_... |
ed3ab7ab75f035635a0935ed05ccaa49f403da7fe1b29e8ba4eaeda8ae57dfb6 | Shell | 5,462 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-54 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C1_orca_min_hessian_... |
157f9f77ecb0dd06b081cf23cbe70885d0cb0202410c2c880b748d4818553995 | Shell | 5,469 | 178 | #!/bin/bash
# This script builds a portable tiny (6.4MiB on my system) build environment based on tcc and musl,
# using the Holy build box environment to create the portable binaries.
# The build directory contains a (patched) tcc that will find out from which dir it is run, and use the included
# musl library for co... |
3f0e5cfd699cb0396af31825a97822a5772a9f506ac238b4ec26b3adbbaafcf9 | Shell | 5,473 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-54 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/C1_orca_min_hessian_n... |
565882bd9f0a1fdc3f1035631b84bd02879cbe13fa1f2084fc4bef57d2c88c4a | Shell | 5,473 | 176 | #!/bin/bash
#: Title : test_imgslope
#: Date : 2019-09-17
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../imgslope
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\... |
38e3358e9745220ce312df95fa28d819c5c2a310aad5b6c76bae608d81485f94 | Shell | 5,477 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-97 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/D1_orca_min_hessian_... |
a83ab261edeffb328910db3795b967428b95a72314d72e8df5605298660475f3 | Shell | 5,478 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-97 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/D1_orca_min_hessian_... |
35f1f4b42dd02e599d677eac5fffcfdeb09ac60f70caa906d95d7f9dae0f09f5 | Shell | 5,479 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-75 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/A2_orca_min_hessian_... |
f4c1f32c3e9a275da2e8c8bbd822c71fe385ac118daea3c9de88b3f5164aa8f1 | Shell | 5,480 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-75 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/A2_orca_min_hessian_... |
d711928a06151c039906d7329bff79324a0e83653ae7070bbcef90c2d2cecef9 | Shell | 5,489 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-97 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/D1_orca_min_hessian_n... |
7e8d0c19ca96f8a1390c5a6914f9c3077020f3f8ebb1597ed42f1242c6e4b937 | Shell | 5,491 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-75 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/A2_orca_min_hessian_n... |
ff06d4f783eb10a61b5575674944198a08335f8f8267d79d7c17af17a2ae2f66 | Shell | 5,493 | 134 | #!/bin/bash
#
# Preprocess data.
#
# Dependencies (versions):
# - SCT (5.4.0)
#
# Usage:
# sct_run_batch -script preprocess_data.sh -path-data <PATH-TO-DATASET> -path-output <PATH-TO-OUTPUT> -jobs <num-cpu-cores>
# Manual segmentations or labels should be located under:
# PATH_DATA/derivatives/labels/SUBJECT/ses-0X/an... |
f9092c720f4f9ca5156b63e9653ee5c192a429f83e0d2ad9c3c6eac268a44042 | Shell | 5,496 | 150 | #!/bin/bash
#
# trashCleanMonitor.sh - script to call trashCleaner.bash and verify
# that it actually worked OK
#
# different echo commands for different systems, the -e means:
# -e enable interpretation of backslash escapes
# a typical feature found in the GNU echo command
export ECHO="/bin/echo -e"
# address... |
4bd13a4eea462bafebef963027bc9f815572dd9017e1442768f4e8e8d0f44d2e | Shell | 5,497 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-136 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/B2_orca_min_hessian... |
d22ee0f6dd7996b6584b016f24ccfdfd4b6278d302b85f18bb5d8515924cb516 | Shell | 5,498 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-136 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/B2_orca_min_hessian... |
086c817a334eda4e2c7e2c8d4b40eb1e33f48408f189a968265721d07acd9820 | Shell | 5,500 | 115 | #!/bin/bash
##################################################################
# Author: Carrisa V. Cocuzza. 2023. Yale University. Holmes Lab.
# Description: Per participant, this script performs the main steps in fMRI data processing after HCP minimal preprocessing (see: hcp_main_milgram_tcp_2023.sh).
# Project: ... |
c92e9bfdf8a9277d0bfbeccf5e9d7d78013291e22f9bb0e18add1b1630eb9ac4 | Shell | 5,509 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-136 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/B2_orca_min_hessian_... |
9c96664fd17cad2ec2b56117a8909104fc17abcd17a47c4b124f5f3bd4b0e494 | Shell | 5,516 | 194 | #!/bin/bash
#: Title : test_imgcat
#: Date : 2018-10-24
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../imgcat
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"
... |
1a09b7b925dddcfe9b91e8c8c86dd51c35920ba63dd71cbe08c5811a994dc56c | Shell | 5,524 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-69 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C4_orca_min_hessian_... |
1c079ec3a8ef037a9f70cd96110b74ebbfd340f088b2be6dd9fc0caa3938be37 | Shell | 5,524 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-186 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/A4_orca_min_hessian... |
cefe28b88f7498de21bd7787579d1a5a5449393b084280b18c8a817a89ba2663 | Shell | 5,524 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-76 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C3_orca_min_hessian_... |
30df46afd63da6d75b891444afc7a66d4865371846d8714510930087a4bca07c | Shell | 5,525 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-69 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C4_orca_min_hessian_... |
6a1fc971abf883aac748a7bcb9a396462254be66c3f6952b8d296acd15344e90 | Shell | 5,525 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-76 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C3_orca_min_hessian_... |
78adea6c3b827b77a13217c1f3899385e6e7beee0e8caefb9d41e8c85c668d14 | Shell | 5,525 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-58 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C2_orca_min_hessian_... |
d5c5cfb5f1c354cf7bfa16bd86345d60899080708477b60c808910e73c6f291a | Shell | 5,525 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-186 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/A4_orca_min_hessian... |
847059525f325048252022a43af4d52fc367957521951c211d12663d30cf8e32 | Shell | 5,526 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-58 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C2_orca_min_hessian_... |
8999c8fa3f01cd8fa01af0bd5d6f2a4875b78be9c97ec97fa17711d88b7c0329 | Shell | 5,526 | 194 | #!/bin/bash
#: Title : test_tacsety
#: Date : 2014-12-11
#: Author : "Vesa Oikonen" <vesa.oikonen@utu.fi>
#: Options : None
# Set the name of executable to test
PROGRAM=../../tacsety
if [ ! -f $PROGRAM ]; then
if [ ! -f $PROGRAM.exe ]; then
printf "Failed: executable $PROGRAM does not exist.\n"... |
22c3caa695478134ce957b0930f3404e2533e49e74b614e48f05e8f5a8742f45 | Shell | 5,533 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-131 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C7_orca_min_hessian... |
86cbb98ef93e6c3fd0ce0233229a612e9f062741b74bc7be4627f02d898d6094 | Shell | 5,533 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-184 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/A3_orca_min_hessian... |
d8f6b6d69f8103488c69f5c1fe408aa43e6fe7c5138dca8711b5ff4353085979 | Shell | 5,533 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-313 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/B4_orca_min_hessian... |
dfc67aed1f3a7589883e6a19cd5de7482502b5f095120f91cef5e0ab358c6058 | Shell | 5,534 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-313 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/B4_orca_min_hessian... |
e2d8b47448d3f29ea34e1df4c4539b83ac2a7c493914c0d67ec01836389452b3 | Shell | 5,534 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-184 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/A3_orca_min_hessian... |
e79d09b4fbd3571f8bee8b5fe2a0bd131fd7b164c53e66bf0eafe9c27aeebc26 | Shell | 5,534 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-131 -n 16 --tmp=10000 --time=04:00:00 --mem-per-cpu=4000 --output=/cluster/project/igc/kpaul/MB_logs/C7_orca_min_hessian... |
08dfa0279fad681e957132287c57f23c63260416359032dc4f4bfca43203eaab | Shell | 5,536 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-76 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/C3_orca_min_hessian_n... |
91e175d24cc15bc9281cddf6dfcca7815d911a5010f43750c85092bc26edc37e | Shell | 5,536 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-186 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/A4_orca_min_hessian_... |
95f0ec87a28df3778bc3108d0a9602a63baae9a55591c745602b01fdfbf5f4a7 | Shell | 5,536 | 41 |
source ../setup.sh
model=/cluster/work/igc/kpaul/projects/small_molecule_multisolvent/MachineLearning/trained_models/ProductionRun_seed_1612_49_ckpt.pt
jobidChloroform=$(sbatch --parsable --array=0-69 -n 2 --tmp=10000 --time=24:00:00 --mem-per-cpu=8000 --output=/cluster/project/igc/kpaul/MB_logs/C4_orca_min_hessian_n... |
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