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"""Open Babel protonation support."""
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Python
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"""Reusable workflow orchestration."""
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from .SelectGroups import SelectGroups
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from .window_config import WindowConfig
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# This file is intentionally left blank.
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from ._base import * from .coba import *
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from ._base import * from .gabor import *
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from ._base import * from .tuner import *
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from .hyphenchoice import HyphenAwareChoice
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from .base import * from .trainable import *
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import py_compile py_compile.compile('t1.py')
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from ._base import * from .connectors import *
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from ._base import * from .transforms import *
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from ._base import * from .plasticity import *
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"""BrainSpace version""" __version__ = '0.2.1'
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from rdkit.Chem import Mol Rxn = tuple[Mol, Mol]
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from .patterns import * from .generation import *
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# Copyright (c) Facebook, Inc. and its affiliates.
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__version__ = '0.1.0' from . model import SpaAlign
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"""Deprecated module kept for compatibility."""
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import os os.environ["NO_ALBUMENTATIONS_UPDATE"] = "1"
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from . import parcellation __all__ = ['parcellation']
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from .pipeline import NDreamer __all__ = ['NDreamer']
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"""Validation helpers for prepared ligand structures."""
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from taming.modules.losses.vqperceptual import DummyLoss
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# import from directory is not allowed from . import dir1a
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import os print(os.path.dirname(os.path.abspath(__file__)))
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from django.test import TestCase # Create your tests here.
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"""Optional dominant-tautomer selection (off by default)."""
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from . import layers from . import models from . import utils
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import WORC.statistics.compute_CI import WORC.statistics.delong
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# project/shared/utils/__init__.py # (can be completely empty)
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from .__version__ import __version__ from .cshift import CShift
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from ._cli import utils_cmd_group __all__ = ["utils_cmd_group"]
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from ._base import * from .poisson import * from .spatial import *
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from .paramset import ModelParams from .parser import ConfigParser
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from ldm.modules.losses.contperceptual import LPIPSWithDiscriminator
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from .simpleworc import SimpleWORC from .basicworc import BasicWORC
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import setuptools if __name__ == "__main__": setuptools.setup()
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from ._cli import segment_cmd_group __all__ = ["segment_cmd_group"]
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from ._cli import measure_cmd_group __all__ = ["measure_cmd_group"]
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# micorr/__init__.py from . import snr_func __all__ = ['snr_func']
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from ._base import * from .managers import * from .simulator import *
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from ._cli import classify_cmd_group __all__ = ["classify_cmd_group"]
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from . import _version __version__ = _version.get_versions()['version']
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from ._cli import steinbock_cmd_group __all__ = ["steinbock_cmd_group"]
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from ._cli import preprocess_cmd_group __all__ = ["preprocess_cmd_group"]
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def test_import(): import mocokit assert hasattr(mocokit, "Recon")
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from .numpy_core import ndarray def norm(*args, **kwargs) -> ndarray: ...
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"""Keep this file so Python treats `common` as a package for shared imports."""
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from ui_app import main if __name__ == "__main__": raise SystemExit(main())
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import os import sys sys.path.append(os.path.dirname(os.path.abspath(__file__)))
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install_dir = r'D:\drvers\progz\bio\dock\Modeller9v1' license = r'MODELIRANJE'
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from .comp import CompartmentModel, DrosophilaPN from .network import PointNetwork
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from ._utils import SteinbockUtilsException __all__ = ["SteinbockUtilsException"]
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from brainspace._version import __version__ # Default rendering OFF_SCREEN = False
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from models.ae import AE, AE_rf, AE_EGNN, Baseline from models.gcl import GCL, GCL_rf
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#!/usr/bin/env python # # Copyright (c) 2014 10X Genomics, Inc. All rights reserved. #
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from .api import * from .database import * from .models import * from ._utils import *
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from .data import * from .labels import * from .io import BASE_DIR, DATA_DIR, EXPT_DIR
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__version__ = '0.1.7.post1' __all__ = [ # noqa 'utils' ] from . import * # noqa
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from .resnet import ResNet_1D_Custom_Multihead from .lightningmodel import LightningModel
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from ase.io import read from ase.visualize import view view(read('.xyz', index=':'))
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from .vae_module import GruVAE from .base import BaseVAE __all__ = ["BaseVAE", "GruVAE"]
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# -*- coding: utf-8 -*- """ Created on Wed Mar 19 12:00:32 2025 @author: robin """
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class UserProperty(property): """Simple wrapper around property for typing purposes."""
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# -*- coding: utf-8 -*- """ Created on Wed Mar 19 12:00:14 2025 @author: robin """
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# -*- coding: utf-8 -*- """ Created on Wed Mar 19 11:59:35 2025 @author: robin """
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from .base import * from .mining import * from . import detection, postproc, refinery, stats
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"""Pseudo-Bulking Single-Cell RNA-seq""" __version__ = "0.1.4" from .adpbulk import ADPBulk
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from .arrays import * from .conversion import * from .filtering import * from .random import *
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from ._steinbock import SteinbockException, logger __all__ = ["SteinbockException", "logger"]
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# Copyright (c) Facebook, Inc. and its affiliates. # pyre-unsafe from .trainer import Trainer
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__all__ = ['NewAxis', 'ArrayType'] from numpy import newaxis as NewAxis, ndarray as ArrayType
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from ._measurement import SteinbockMeasurementException __all__ = ["SteinbockMeasurementException"]
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# Copyright (c) Facebook, Inc. and its affiliates. dir1a_str = "base_a_1" dir1a_dict = {"a": 1, "b": 2}
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from ._segmentation import SteinbockSegmentationException __all__ = ["SteinbockSegmentationException"]
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# -*- coding: utf-8 -*- """ Created on Sat May 7 18:55:22 2022 @author: walte """ import torch
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from .._steinbock import SteinbockException class SteinbockUtilsException(SteinbockException): pass
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# Copyright (c) Facebook, Inc. and its affiliates. # pyre-unsafe from .image import ImageResizeTransform
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from ._preprocessing import SteinbockPreprocessingException __all__ = ["SteinbockPreprocessingException"]
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from .EEGDataset import * from .Splitter import * from .lib import * from .ValidationOnlySplitter import *
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from AE.models import AutoEncoder from AE.trainer import Trainer # from AE.utility import create_activation
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from .base import * from .rates import * from .spikes import * from .states import * from .metrics import *
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from ._classification import SteinbockClassificationException __all__ = ["SteinbockClassificationException"]
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from .._steinbock import SteinbockException class SteinbockMeasurementException(SteinbockException): pass
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from .._steinbock import SteinbockException class SteinbockSegmentationException(SteinbockException): pass
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# Copyright (c) Facebook, Inc. and its affiliates. # pyre-unsafe from .evaluator import DensePoseCOCOEvaluator
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from .._steinbock import SteinbockException class SteinbockPreprocessingException(SteinbockException): pass
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from .experiment import * from .trial import * from .artifacts import * from .loader import * from .store import *
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from .._steinbock import SteinbockException class SteinbockClassificationException(SteinbockException): pass
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from .geometry import ( BoreschRestraintGeometry, find_boresch_restraint, find_guest_atom_candidates, )
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from ._cli import export_cmd_group, histocat_cmd, ome_cmd __all__ = ["export_cmd_group", "histocat_cmd", "ome_cmd"]
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from .backends import * from .definitions import * from .interfaces import * from .record import * from .types import *
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import logging logger = logging.getLogger(__name__.rpartition(".")[0]) class SteinbockException(Exception): pass
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"""Stoic — Fast and accurate protein stoichiometry prediction.""" from stoic.model import Stoic __all__ = ["Stoic"]
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# Copyright (c) Facebook, Inc. and its affiliates. from .config import add_tensormask_config from .arch import TensorMask
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# type: ignore import lazy_loader __getattr__, __dir__, __all__ = lazy_loader.attach_stub(__name__, __file__) __all__ = []
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from pathlib import Path class TestViewer: def test_view(self, imc_test_data_steinbock_path: Path): pass # TODO
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"""CASCADE core analysis modules - v0.8.0""" from . import spikes, bursts, avalanche, criticality, connectivity, entropy, plots