sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
2d088293b39ad40c60aa43f0e6fa264289133c10b4dc68d944be3bc40e3fed56 | MATLAB | 616 | 22 | function fixed_points = load_fixed_points(model)
dire=[model.dire num2str(model.model_num)];
%get fixed points
fixed_points.f1=readNPY(['data/' dire '/f1.npy']);
fixed_points.f2=readNPY(['data/' dire '/f2.npy']);
%output
fixed_points.o1=fixed_points.f1*model.wO'+model.bO;
fixed_points.o2=fixed_points.f2*model.wO'+mo... |
db61994c768dd578fc7eecb2229bd7673c105d168623610ed917d946908c52b1 | MATLAB | 616 | 17 | function t = uplus(t)
%UPLUS Unary plus for ttensor.
%
% See also TTENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the terms of Co... |
ecd013c9a333f9177af624324b901801946f1f78e96485e096d31df129f87c5a | MATLAB | 616 | 29 | %% Run Kmedoids on the old faithful data
%
%%
% This file is from pmtk3.googlecode.com
X = loadData('faithful');
X = standardizeCols(X);
N = size(X,1);
Y = X'; % Y(:,i)
dst = sqdist(Y,Y);
S = exp(-dst);
K = 2;
[idx,dpsim]=kmedoids(S,K,1,10);
[score, bestrun] = max(dpsim(end,:));
ndx = idx(:, bestrun);
centroids = uni... |
00ad7318c9f7dab3c945b3ae7b7f63bc65751fedc1f5fd83f46c6cd8dfaac2dd | MATLAB | 617 | 24 | function [ values, centers,sevalues] = getNonlinearity(linearOutput, spikes, nbins, dt)
%UNTITLED3 Summary of this function goes here
% Detailed explanation goes here
qtStep = 1/nbins;
qtEdges = 0:qtStep:1;
genEdges = quantile(linearOutput, qtEdges);
[a, spikebins] = histc(linearOutput,genEdges);
values = ... |
43e08c29eaacaac7ffcc80301acf73b5f4e6d495d5bdfc9756b3435f7f293e9c | MATLAB | 617 | 23 | function h = circle(ax,xyAll,r,matchZ,varargin)
ncircles = size(xyAll,1);
if isempty(varargin)
c = repmat([0 0 0],ncircles,1);
else
c = varargin{1};
end
hold(ax,'on')
axis(ax,'manual')
for i = 1:ncircles
x = xyAll(i,1);
y = xyAll(i,2);
th = 0:pi/50:2*pi;
xunit = r(i) * cos(th) + x;
... |
4e47aa52b4bbbef749e8109ef8e4dd44965fae9203aa31923b9efc1d99241435 | MATLAB | 617 | 30 | function x = normy(x)
%This function performs preprocessing of input micrographs including
%normalization to quantiles 2% and 98% for contrast adjustment, clipping
%values outside the 0-1 range, resize to [640 448]px and add some noise.
[~, ~, ext] = fileparts(x);
if strcmp(ext, “.mrc”)
x = double(ReadMRC(x));
else
... |
658554e19b2f8e35b97a2450fc223dba3538f39e1c9a35b69a4423137706e96a | MATLAB | 617 | 25 | %{
Copyright (c) 2025 Axion BioSystems, Inc.
Contact: support@axion-biosystems.com
All Rights Reserved
%}
classdef LedColor < uint16
%LEDCOLOR Color of a Stimulating LED
enumeration
% None: Indicates that a color hasn't been assigned yet.
None(uint16(0)),
% None: Indicates t... |
a89f919b0035a0b8ab2776f726210310b38a97d3d56c254d0ee1f1fd5ca8a819 | MATLAB | 617 | 32 | function dgm = dgmClampCpds(dgm, clamped)
%% clamp unadjustable cpds prior to e.g. learning
% removes precomputed jtree if any
% This file is from pmtk3.googlecode.com
if ~any(clamped)
return;
end
CPDs = dgm.CPDs;
eqc = computeEquivClasses(dgm.CPDpointers);
for i = 1:numel(CPDs)
eclass = eqc{i};
if clam... |
ad392bff4fc7a6d11221cfcc65a49082657af85601ae608cbc46e808f1a24b50 | MATLAB | 617 | 18 | function Z = xor(X,Y)
%XOR Logical EXCLUSIVE OR for tensors.
%
% See also TENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the ter... |
e1e8945a5fa5f36e75d65cfdc0c93e6bd3185d0184e2164985f9315232f55ad4 | MATLAB | 617 | 27 | function [xout,yout] = normfig2coords(x,y,h)
if ~exist('h','var')
h = gca;
end
if ~strcmpi(get(h,'type'),'axes'),
error('Handle must correspond to an axis');
end
xax = get(h,'xlim');
yax = get(h,'ylim');
pos = get(h,'position');
yisreversed = strcmpi(get(h,'ydir'),'reverse');
xisreversed = strcmpi(get(h,'xdir'... |
72d11e9bf4b8cb3cd649cb135a5ee0eac4207084fa4c876f2bd4303296fe674b | MATLAB | 618 | 27 | function [ M ] = mbz_cly_mask(sz, s, h, c, r, g)
%mbz_cly_mask Generates a cylindric mask for membrane subvolumes whose
% membrane is on plane XY
% sz: subvolume size (all parameters are in voxels)
% s: starting Z axis point for the cylinder
% h: cylinder heigh in Z axis
% c: cylinder cente... |
0f267f907df0dfaf15aa9f5173cedd6cba7056cbea19fcad5b57e590fbb6ebe3 | MATLAB | 619 | 19 | function h_removeFromCurrentGroup3(handles, filename)
global h_img3;
[currentInd, handles, currentStruct, currentStructName] = h_getCurrendInd3(handles);
[pname,fname,fExt] = fileparts(filename);
groupFileNames = {currentStruct.activeGroup.groupFiles.fname};
I = ismember(groupFileNames, [fname, fExt]);
... |
b2384bd9ac34df3ec93cd9d6b1f943999e781d91078aa7e83c614c7e5e4633ee | MATLAB | 619 | 18 | function Z = ge(X,Y)
%GE Greater than or equal (>=) for tensors.
%
% See also TENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the ... |
bd9ae2470575dff9f3b89f527c4e15d277ee35f6f0fbd84131cf0b0461e6800b | MATLAB | 619 | 26 | function out=normalExpGammaNeglogpdfDeriv(z,shape,scale)
% Derivative of normal exponential gamma negative logpdf function
% gamma^2 = c = scale
% This file is from pmtk3.googlecode.com
lambda = shape;
gamma = sqrt(scale);
%warning off
out=(lambda+0.5)/gamma...
.*paracyl(-2*(lambda+1),abs(z)/gamma)...
./p... |
13be191e0d5ca9a2757acca2157db5c2d13208f5c1d5f31d502a0067e10d4ccc | MATLAB | 620 | 23 | function h = filledCircle(ax,xyAll,r,matchZ,stim,varargin)
ncircles = size(xyAll,1);
if isempty(varargin)
c = repmat([0 0 0],ncircles,1);
else
c = varargin{1};
end
hold(ax,'on')
axis(ax,'manual')
for i = 1:ncircles
x = xyAll(i,1);
y = xyAll(i,2);
th = 0:pi/50:2*pi;
xunit = r(i) * co... |
4a62cfe63dab44aef33cad1dde8fb2dd550404b957948e90a93636bd981a97c7 | MATLAB | 620 | 14 | function inside = findInsideVoxels(X,Y,Z,filename,A,v)
if ~isequal(size(A),[3 3])
error('The multiplication matrix A (argument 5) must have dimensions 3x3. If you don''t want any scaling, rotation or mirroring, you can input the identity matrix, eye(3).');
end
if numel(v) ~= 3
error('The translation vector v (argum... |
bb9979608edaf74f1581337c5c62632020084fbf634a22b1e7a80b7299724e90 | MATLAB | 620 | 18 | % List of open inputs
% CAT12: Segmentation: Volumes - cfg_files
% Written by Nanbo Sun and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
addpath(spm_dir)
nrun = 1; % enter the number of runs here
jobfile = {[script_dir '/CBIG_MMLDA_segment_new_template_job.m']};
jobs = repmat(job... |
e06bb8f9d23cb1c7fc606516ef635bb8598128e0fdf3bc4ddd1e1bdeadcdafb7 | MATLAB | 620 | 18 | function display(t)
%DISPLAY Command window display of a tenmat.
%
% See also TENMAT.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the ... |
f8166e7365ad45b07a6021eeb676c78d85c8a80649189d553d0a80bb729f36c4 | MATLAB | 620 | 22 | %% MC Quantile Demo
%
%%
% This file is from pmtk3.googlecode.com
mu = 0; sigma = 1; % standard normal
S = 1000; % number of samples
setSeed(1); % set the seed for the random number generator
xs = gaussSample(mu, sigma, S); % sample from a Gaussian
qs = [0.025 0.5 0.975]; % desired quantiles
qexact = gaussinv(qs, mu,... |
fa239110f058dbd74aed8f6c35cbad1bfa0b9c2791b1a4efa18e535a0f6d1759 | MATLAB | 620 | 19 | function t = uplus(t)
%UPLUS Unary plus (+) for tenmat.
%
% See also TENMAT.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the terms of ... |
08682f9c2dc49bfc3674fce232f116888c04c7201cd28ce358c26a1e8f3fb4f9 | MATLAB | 621 | 18 | function B = not(A)
%NOT Logical NOT (~) for tensors.
%
% See also TENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the terms of Co... |
0e2f151ee2b652bf1ac3105565fa895a82cb993c867db0911713b8e76004ddeb | MATLAB | 621 | 24 | function enum = enumerate(strings)
% Create an inverted map from strings to their index values in a list
%
% If any string is not a valid field name, it is made valid using
% genvarname(), therefore it is good practice to index into enum with
% enum.(genvarname(name)).
%
% EXAMPLE:
%
% enum = enumerate({'alpha','beta',... |
13c904ce5ab162c486b53af26fa4d6b6273c2e606f70c34fc2ebc04e6c7614ab | MATLAB | 621 | 19 | function t = uplus(t)
%UPLUS Unary plus for a ktensor.
%
% See also KTENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the terms of... |
2666185ee3b4fcf45ceb6c8286512481909f2b4dae62f83e3fa58ee3ea1f6888 | MATLAB | 621 | 17 | % Slice sampling in 1d
% From http://www.mathworks.com/help/toolbox/stats/slicesample.html
requireStatsToolbox();
setSeed(0);
f = @(x) exp( -x.^2/2).*(1+(sin(3*x)).^2).* ...
(1+(cos(5*x).^2));
x = slicesample(1,2000,'pdf',f,'thin',5,'burnin',1000);
hist(x,50)
set(get(gca,'child'),'facecolor',[0.8 .8 1]);
... |
399e0f26119b7efe065eac258b8de5e44342295a3a57b6fb78758f5db7f3e9a4 | MATLAB | 621 | 40 | function plot_error(x,D,E,C,A)
% <°LAN)<] toolbox
% v.0.1
%
% Plot line graphic with error areas
% x : X eje, a vector
% D : Data, a vector
% E : Error a vector
% C : Color a charecter e.g. 'blue'
% A : Trasparency, a scalar e.g. 0.4
%
%
% Pablo Billeke
% 07.01.2015
% alpha for transpare... |
81aa37e377be42f1930de74315241b7cef43ac34760ec892ea648951321e56ef | MATLAB | 621 | 29 | function [data, labels] = make2dData(ndata, Nclasses)
% Generate mixture of 2-3 Gaussians in two dimensional space
% Based on dem2data from netlab
% This file is from pmtk3.googlecode.com
data = randn(ndata, 2);
% Cluster centres
c = [2.0, 3.5; 0.0, 0.0; 0.0, 2.0];
% Cluster standard deviations
sd = 1*[1 1 1];
... |
8359431e1678f8450084c5bfaa512e16d5b5c8011f84fc2fce38596791e740c7 | MATLAB | 621 | 19 | function t = uplus(t)
%UPLUS Unary plus (+) for tensors.
%
% See also TENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the terms of... |
8df47de213187a63c8fb184870121380d17edab440b8b23798b9b7470c604e32 | MATLAB | 621 | 20 | function [tf,p,occ,ts] = isLabeledPerPtFT(s,frm,itgt)
% [tf,p,occ,ts] = isLabeledPerPtFT(s,frm,itgt)
% Added by KB 20220202, similar to isLabeledFT
% tf(i) indicates whether landmark i is labeled.
% p, occ, ts returned are the landmarks locations, occluded labels,
% and timestamps
i = find(s.frm==frm & s.t... |
9545133a8eefa8982f4911da4293c15d348645bb10fd52b2aa333341d763325d | MATLAB | 621 | 17 | function display(t)
%DISPLAY Command window display of a ttensor.
%
% See also TTENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under th... |
d83169aac6136faa942fc164b752f8a18334e1343106f91acde5c388dad7c9c1 | MATLAB | 621 | 27 | %% Plot Inverse Gamma Distributions
%
%%
% This file is from pmtk3.googlecode.com
as = [1 1.5 2];
b = 1;
bs = b*ones(1,length(as));
figure;
[styles, colors, symbols] = plotColors;
legendStr = cell(1, length(as));
for i=1:length(as)
a = as(i); b = bs(i);
xs = linspace(0.1, 7, 200);
model.a = a;
model... |
d8662d1bb32339d851b017c5abf9afcc38e72c67241456f763f8423b51985b3a | MATLAB | 621 | 22 | function [p]=exclude_subj(p,excluding_subj)
if isempty(excluding_subj)
for ss=1:length(p.subj.include)
p.subj.include(ss)=true;
end
else
for ss=1:length(excluding_subj)
tmp_index = strmatch(excluding_subj{ss},p.subj.ID);
if ~isempty(tmp_index)
... |
f8e0605577e5c44fc8b227813583ab9e00e20f53900630f531a09e602538a76b | MATLAB | 621 | 23 | function s = createStruct(names, values)
%% Create a struct from two separate lists: names, and values.
% Usually to create a struct you have to interleave the names and values
% as in struct('name1',val1,'name2',val2,...) - here you can pass in the
% names and values as two cell arrays. If values is not specified, it ... |
6d748ed701f4e706f9d1a5e9efa4bce327f9ac3685d04d6f0bf89916d5018520 | MATLAB | 622 | 32 | function [w, b] = perceptronFit(X, y)
%% Classic perceptron algorithm
% X(i,:) for case i
% y(i) = -1 or +1
%PMTKauthor Thomas Hoffman
% This file is from pmtk3.googlecode.com
labels = y; features = X';
[n d] = size(X);
w = zeros(d,1);
b = zeros(1,1);
max_iter = 100;
for iter=1:max_iter
errors = 0;
for i=1:... |
8f92d03e4cbd6f99a58e04ea36af8d6bacf5c254b3a132f87e3ff87958f4e23c | MATLAB | 622 | 19 | function t = uplus(t)
%UPLUS Unary plus (+) for sptenmat.
%
% See also TENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the terms o... |
9db0278637a139cacce2f14bc1c4f8ff22af2b371f6a830e4c28db75d1770dd8 | MATLAB | 622 | 20 | function [logp] = mixGaussLogprob(varargin)
% logp = mixGaussLogprob(model, X)
% or
% logp = mixGaussLogprob(mu, Sigma, mixWeight, X)
%
% logp(i) = log p(X(i,:) | mu(:, i), Sigma(:, :, i), mixWeight(i))
% This file is from pmtk3.googlecode.com
if nargin == 2
model = varargin{1};
X = varargin{2};
else
mu = vara... |
a9c37a3e82159da8dfad76a87cb1746d32b96724ab2b30763d07a24355c06a7f | MATLAB | 622 | 18 | function n = nnz(x)
%NNZ Number of nonzeros for tensors.
%
% See also TENSOR, SPTENSOR/NNZ.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Und... |
c6aa703346bd7f8b050ac77e8ebdeaef38a6aa2efca421a0b8763517d46a8043 | MATLAB | 622 | 23 | function result = fastLinearInterp(inputGrids,image,ss)
image = single(image);
imageInterp = zeros(size(image,1)*ss,size(image,2)*ss,'single');
% divSum = ones(size(image,1)*ss,size(image,2)*ss,'single');
imageInterp(1:2:end,1:2:end) = image;
%
% interpolate colums;
imageInterp(1:2:end,2:2:end) = imageIn... |
f4658cf111c0ae92c1094516d074ff69c9edb6423f846bdd0f6577efd4edc545 | MATLAB | 622 | 21 | function z = zipmats(varargin)
% Zip up multiple numeric vectors into one cell array
% Takes in an arbitrary number, K, of numeric vectors, v1, v2,...vj,...,vk
% all of the same size, N-by-1, (or 1-by-N) and returns a cell array z,
% such that z{i}(j) = vj(i) for all i in 1:N and all j in 1:K.
%
% Example:
% z = zipmat... |
1495af6ed1f76be7fcb2428fecce976806c73a130c219907cbd37d25c4416375 | MATLAB | 623 | 19 | function CBIG_KRDNN_KR_TVT_example()
% CBIG_KRDNN_KR_TVT_example()
%
% This function is the example function of the kernel ridge regression
% algorithm with normal training, validation and testing.
%
% Written by Tong He and CBIG under MIT license: https://github.com/ThomasYeoLab/CBIG/blob/master/LICENSE.md
% add ... |
1711e5c8927f4a77865e69dfc04030f4888228653b3b676ae180f92e9051a4b8 | MATLAB | 623 | 20 |
function A = Afun_lap_te(i,j,x,nu,area,P,S,contrast,wuse)
% AFUN(I,J) computes entries of the matrix A to be factorized at the
% index sets I and J. This handles the near-field correction.
if isempty(i) || isempty(j)
A = zeros(length(i),length(j));
return
end
[I,J] = ndgrid(i,j);
A = 2*bsxfun(@times,lap_neumann_k... |
632ad364d0120e16690a54e8d13242ca2f70f426a9873730fdb896ab259ab33a | MATLAB | 623 | 35 | %% Load the data
%CAN DELETE THIS FILE
load('registration_allkeys_round001.mat')
%%
bigExpParams;
%%
ROUND=1;
numTiles = prod(bigparams.EXPERIMENT_TILESIZE);
%Take an estimate size
pos = zeros(numTiles*1000,2);
running_ctr = 1;
for F = 1:numTiles
keys = keys_all{F,ROUND};
if length(keys)==0
... |
66179dfb953e27b5ad2c65a6fb69c5a150c33badbee8c7ed1dc13c348b226b64 | MATLAB | 623 | 28 | function [tffound,iMov,frm,iTgt,xyLbl,mints] = findEarliestLabeledFrameFromLabels(labels)
% Look only in labeledposGTaware, and look for the earliest labeled
% frame.
tffound = false;
mints = inf;
for jmov = 1:numel(labels)
s = labels{jmov};
[mintscurr,i] = min( min(s.ts,[],1) );
if mi... |
7167dd867219d605d29e03366ee67d5e0f01dc4591487043a74214b89a762985 | MATLAB | 623 | 21 | function val = essential_costE2cost(X, costE)
% Cost evaluation at X given function handle in the Essential matrix E.
%
% function val = essential_costE2cost(X, costE)
%
% costE is the function handle for the cost function in E.
%
% See also: essential_egradE2egrad essential_ehessE2ehess
% This file is part o... |
a4f29712329728af49b17de14d52b3ef403f52e221215e831e21737b11ec9c45 | MATLAB | 623 | 31 | function data = create_stim(R, gamma_dir, gamma_freq, T, res, ntrials)
% rates of Poisson events on left and right
rrate = R/(exp(-gamma_dir)+1);
lrate = R - rrate;
% rates of Poisson events on left and right
hirate = R/(exp(-gamma_freq)+1);
lorate = R - hirate;
frac_hi=hirate./(hirate+lorate);
frac_lo=1-frac_h... |
af029555dd928194ad7db2e2098e617f058085f09c409ec911e9d4923deac93c | MATLAB | 623 | 15 | function setup = StateSwitch_settingsTask(setup)
% settings for task eeg
setup.DEBUG = 0;
setup.opacity = .4;
setup.keyB = 1;
setup.ET.useET = 1;
setup.EEG.useEEG = 1;
setup.EEG.DIO.parallelTrigger ... |
e4acba98e93a76494d74cd7e6875ccebec369e991ac972af4d016a44bb6db3bf | MATLAB | 623 | 29 | function [lintrafo, clab_electrodes,chaninds,myinds]=clabstandard2clab(clab_act,clab);
%load clab_standard
nchan_act=length(clab_act);
nchan=length(clab);
%lintrafo=zeros(nchan_act,nchan);
%clab_electrodes=clab_act;
%chaninds=zeros(nchan_act,1);
ii=0;
for i=1:nchan_act
kont=0;
for j=1:nchan;
if strcmp(clab... |
0a45057b996a8ed62194d0b7234c6ac134f4f35ceba55ca59b74f6a2ef3a60ba | MATLAB | 624 | 19 | function t = uplus(t)
%UPLUS Unary plus (+) for sptensor.
%
% See also SPTENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under the terms... |
462d8913cb78b3a2507de81e08fe150287ecc4d98e187cfc146a173d602e529c | MATLAB | 624 | 19 | % Copyright Christopher Fricke, University Leipzig Medical Center,
% Neurology 2024
srcf = 'data\raw';
tgtf = 'data\prep\coreg_indiv';
d = dir(srcf);
mkdir(fullfile(tgtf,'ct'));
mkdir(fullfile(tgtf,'datscan_tf'));
for i = 3:length(d)
disp(d(i).name);
if ((d(i).isdir) && (d(i).name(1) == 'P'))
... |
4b6c39bbbbc597c14bf6a15d488cf10d9550bc263b165c8e0796842befb68d01 | MATLAB | 624 | 29 | function figclosekey(h, key)
%FIGCLOSEKEY Add a hotkey for closing the figure.
% Usage:
% figclosekey(h, key)
%
% Args:
% h: figure handle (default: gcf)
% key: hotkey to use (default: 'q')
%
% See also: event, addlistener
if nargin < 2 || isempty(key); key = 'q'; end
if nargin == 1 && ischar(h); [h,key] = swa... |
52cdf2be7a61f4c8207d889f645c2c1e9891f12c1ed6ec4897eb361d2b37c0cb | MATLAB | 624 | 20 | function excludeList = getExcludeList(animalprefix)
% excludeList = decode.getExcludeList(animalprefix);
%
% List of interneurons (from Wenbo's code for Shin et al., 2019)
if strcmp(animalprefix,'ER1')
excludeList = [1,1;1,2];
elseif strcmp(animalprefix,'KL8')
excludeList = [];
elseif strcmp(animalprefix,'JS14... |
573c7d6eb3be42262ccc20ece48d0c1506a23e6f2d77341d0e6b563cacebd53f | MATLAB | 624 | 26 | function Qdec2 = rmQdecCol(Qdec1,col)
% Qdec2 = rmQdecCol(Qdec1,col)
%
% Removes the specify column from cell string array Qdec1.
%
% Input
% Qdec1: Two dimensional cell string array of Qdec data (eg. read with
% fReadQdec).
% col: Column to be removed.
%
% Output
% Qdec2: Two dimensional cell string array of Qdec da... |
6868ebb1096c2d4337fafdece39c9d17ab23ba9fce77632dcb66230ef90ecc42 | MATLAB | 624 | 26 | function Y = num2strs( X, varargin )
% Applies num2str to each element of an array X.
%
% USAGE
% Y = num2strs( X, [varargin] )
%
% INPUTS
% X - array of number to convert to strings
% varargin - [] additional input to num2str
%
% OUTPUTS
% Y - cell array of strings
%
% EXAMPLE
% Y = num2str... |
25c5774b10a8c8f322f3c6603b916f6707dff2e925a29ba034b1f50d593eec4d | MATLAB | 625 | 25 | function s = mergeviews(sarr)
% sarr: array of Label structures
if isscalar(sarr)
s = sarr;
return;
end
assert(isequal(sarr.npts),'npts must be equal across views.');
assert(isequal(sarr.frm),'frames must be equal across views.');
assert(isequal(sarr.tgt),'targets must be equal across views.');
... |
620de261e1022fe572e4b07e2e5fe0f62b071d4e122d520929da41ccf1df89d0 | MATLAB | 625 | 23 | function tr = multitrace(A)
% Computes the traces of the 2D slices in a 3D matrix.
%
% function tr = multitrace(A)
%
% For a 3-dimensional matrix A of size n-by-n-by-N, returns a column vector
% tr of length N such that tr(k) = trace(A(:, :, k));
%
% See also: multiprod multitransp multiscale
% This file is... |
736cd778cca1f5562a68859b0679942447ee9df07cdecaeb8d231e156b19e361 | MATLAB | 625 | 24 | function [x2,y2] = xformShiftAndRot(x,y,x0,y0,th)
% Affine xformation with shift and rotation
%
% Read coords in a new coord sys that is centered at x0,y0 and rotated at
% th relative to original
%
% x/y: arbitrary arrays of x/y coords (same size, eg outputs of meshgrid)
% x0/y0: center of new coord system
% th: orient... |
a135f4fc8fee36890a9cc249798d7e1e1d03ca5e4c33bf1535eabcb15a0bab59 | MATLAB | 625 | 31 | % _ _
% ___ _ __ __ _| |__ ___ ___ _ __| |_
% / __| '__/ _` | '_ \/ __|/ _ \| '__| __|
% | (__| | | (_| | |_) \__ \ (_) | | | |_
% \___|_| \__,_|_.__/|___/\___/|_| \__|
%
% resets crabsort to default state
function reset(self,wipe_all)
if self.verbosity > 5
disp(['[... |
a5592bc5e6025da2fe615524f34ce990a9461cf8bcddf7700354ef3d147a13d7 | MATLAB | 625 | 18 | % Add Manopt to the path to make all manopt components available.
% This file is part of Manopt: www.manopt.org.
% Original author: Nicolas Boumal, Jan. 3, 2013.
% Contributors:
% Change log:
% Aug. 7, 2013 (NB): Changed to work without the import command
% (new structure of the toolb... |
d1e4463e824ca35113117b183af0106149573f47716126a6f2cfe02fa0c7db48 | MATLAB | 625 | 18 | function [pos] = moveinward(pos, move)
%This functions moves 'pos' inward according to their normals by 'move'
%units
propos = elproj(pos); % projection to 2D
tri = delaunay(propos); %creates delaunay triangulation of 2D plane, which will be used for the the 3D case
nor = normals(pos,tri); %compute normals of surface
o... |
48bf42199a6f3e3fb5a44bbfcc8b4a4d6b88d666c8b62d825b3a5c457ca17c38 | MATLAB | 626 | 31 | function imout = wInvPCA(im0,w,Cclr0,means);
[Nx,Ny,Nclr] = size(im0);
im = reshape(im0,Ny*Nx,Nclr);
wFull = w;
w = w/sum(w);
sqw = sqrt(w);
undow = zeros(size(w));
undow(sqw>0.0001) = 1./sqw(sqw>0.0001);
for icol = 1:Nclr
tmpmean = wmean2(im(:,icol),w);
tmpim(:,icol) = (im(:,icol) - tmpmean).*sqw;
end
%tm... |
52b96e046f262b38c68c31fa02e8549c9b03b944815214220be048621fe471b7 | MATLAB | 626 | 27 | function extras = read_extras(fname)
% Read extra bits of information
%_______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
extras = struct;
[pth,nam,ext] = fileparts(fname);
switch ext
case {'.hdr','.img','.nii'}
mname = ful... |
5982a57cb44d7c668add8bede761c3a49d4c683df8de5c4d02bc1021db3611af | MATLAB | 626 | 21 | function div = CBIG_KLdiv_sym(prob1, prob2)
% Symmetric KL divergence, also called Jensen-Shannon divergence.
%
% div = CBIG_KLdiv_sym(prob1, prob2)
% Input:
% prob1: 1st probability, Nx1 vector
% prob2: 2nd probability, Nx1 vector
% Output:
% div : symmetric KL divergence
%
% Written by CBIG under MIT licen... |
c8081ead44b73223c1cf2ff26b379cbd6d00cc31d8221fc767008fe5e1f6e46d | MATLAB | 626 | 23 | function model = svmlibLinearFit(X, y, C, ignore1, ignore2, options)
% PMTK interface to svm liblinear
% Supports only classification with a linear kernel.
% Download liblinear from
% http://www.csie.ntu.edu.tw/~cjlin/liblinear/#download
% This file is from pmtk3.googlecode.com
y = colvec(y);
if nargin < 6
if n... |
3458c4b135ac5d5ea27bb89f7eeeacd9b31f43ed3622ee77ad72404740b2c76c | MATLAB | 627 | 24 | % this class takes a 0 Mg ORCHID recording and gets all the images that light pulses appear on
function [light_images] = getLightPulsesORCHID0Mg (puff, camera, npulses)
numdps = size (puff, 1);
light_images = zeros (npulses, 2);
on_stim = false;
light_num = 1;
for i = 1:numdps
if puff(i) > 1 && on_stim == fals... |
93667bdace8bb720527fee4352a48164adc73d7cb9839be363bf07fc9e940c7e | MATLAB | 627 | 28 | function T = timelan(LAN,type)
% v.0.3
if nargin == 1
if isfield(LAN,'pnts')
type = 'data';
else
type='ERP';
end
end
switch type
case {'data', 'd', 'Data', 'D'}
if isfield(LAN,'accept')
f = find(LAN.accept,1);
else
f=1;
end
T = lin... |
a1d747ee1be2a9ea9c4b48330cb890ec1c894fd429b25c9c7bdb609dee3a4496 | MATLAB | 627 | 21 | %% Apply L2 Logistic Regression to the XOR problem in original feature
%% space
% We show that the data is not linearly separable
% See logregXorDemo for a solution to this problem
% This file is from pmtk3.googlecode.com
function logregXorLinearDemo()
[X, y] = createXORdata();
lambda = 1e-2; % for numerical stabili... |
aa6799facdcd6729b4e5a54b68962a04f2ecfe8dab7990fc1e38ced06e3b2955 | MATLAB | 627 | 26 | function [pID,pN] = FDR(p,q)
% FORMAT [pID,pN] = FDR(p,q)
%
% p - vector of p-values
% q - False Discovery Rate level
%
% pID - p-value threshold based on independence or positive dependence
% pN - Nonparametric p-value threshold
%______________________________________________________________________________
% $I... |
e36205d3bdabc2ccfd735696507b84c76b1044d4d1b991922e59129c245ffd03 | MATLAB | 627 | 30 | function indices = partitionData(data, pc)
% Partition a vector of data into sets of different sizes
% function indices = partitionData(data, pc)
%
% Example:
% indices =partitionData(1:105,[0.3,0.2,0.5])
% a= 1:31, b=32:52, c=53:105 (last bin gets all the left over)
% This file is from pmtk3.googlecode.com
Npart... |
32726014b3b4b5b312beff53980adabe1307f8951b46f08295398f57b539dd34 | MATLAB | 628 | 16 | function outputPatterns = utils_HighPassBetweenRuns( inputPatterns, TR, cutoffTime )
% (c) Megan deBettencourt 07/2011, Coraline Rinn Iordan 06/2018
% Inputs:
% - inputPatterns: patterns matrix [time x voxels]
% - TR: sampling rate [sec]
% - cutoffTime: filter cutoff [sec]
%
% Outputs:
% - output... |
32add512d1c829110b58ffabb6c2ca4c9e4b188b2a6d5cdf6a4e9f62e789faba | MATLAB | 628 | 24 | function result = splitVector(vector)
% result = utils.splitVector(vector);
%
% Given a vector, produce all possible combinatinations of ways to split
% the elements into two vectors of equal length
n = length(vector);
if mod(n, 2) ~= 0 || n == 0
error('Input vector must have even length and cannot be empty.');
e... |
66c91fab6cca83139da1dc2e910afd229101cd530bbf2f8c4a5891eba03604f7 | MATLAB | 628 | 28 | function J = kjetsmooth(m)
% almost the same as JET, except the first color is black, last color is
% white
if nargin < 1
m = size(get(gcf,'colormap'),1);
end
mend = max(1,round(m/10));
m = m - 2*mend;
n = ceil(m/4);
u = [(1:1:n)/n ones(1,n-1) (n:-1:1)/n]';
g = ceil(n/2) - (mod(m,4)==1) + (1:length(u))';
r = g + ... |
f88b91e641a96297a45085a0051a0b1a62b8e456a172fa2f1fcfa5aeb67c7cca | MATLAB | 628 | 22 | function T = unSandwich(str, leftMarker, rightMarker)
%% Like tokenize, but extracts text between 'sandwiching' markers
%
%% Output
% meat - a (possibly empty) cell array of the unsandwiched tokens
%% Example
%
% meat = unSandwich('please see <mywebsite.html> or <wikipedia.org> for details.', '<', '>')
%
% meat = ... |
706b7da2cd0530d3c1d91e1d912aa5b57c3ce58a685cda6cc41f0ee00a6470b4 | MATLAB | 629 | 30 | function A=merge(D,direction)
% this function merge multicell matrix to one matrix
%
% direction:direction ==1 ?? direction ==2 -> (default=1)
%
%
% HORIKAWA tomoyasu 09/09/03
% modified by tomoyasu horikawa 090917; direction was inversed
len=numel(D);
if len == 0;
A = [];
else
A=D{1};
if exist... |
7097188f70adb69e71db2e61078344ff457d8df40794058473303ce01c259ca9 | MATLAB | 629 | 23 | function new_str = get_new_string(str, strings, format)
%GET_NEW_STRING Returns a new string that does not exist in a provided list by incrementing a number.
% Usage:
% new_str = get_new_string(str, strings)
% new_str = get_new_string(str, strings, format)
%
% Args:
% str: starting string
% strings: array of s... |
cff05825f6f970273c50d462d8a96b8fa654ae16e8dcb54d99b56448b4c213ee | MATLAB | 629 | 24 | function [NNidx,Tidx,TNidx]=IM2idx(IM)
%
% This function provides indexing into module pairs for fast reference based
% on the IM structure of a grouped network.
Nroi=length(IM.key);
Nnets=max(IM.key(:,2));
Tidx=find(tril(ones(Nroi),-1)==1);
TNidx=find(tril(ones(Nnets),0)==1);% Lower triangle w main diag for NN-pairs... |
002161ceb32ae8e8226a71dbc176d404e82dc85cee36e52fda88410f480b2e65 | MATLAB | 630 | 35 | % load ../data/sigSL_allSessions_Ariel.mat
load ../data/sigSL_allSessions_Ariel_230522.mat
S = sigSL_Ariel;
S.MinI_minus_C = S.MinI - S.MinC;
session = S.session;
times = S.t;
dt = times(2) - times(1);
choice = S.choice;
RT = S.rt/1000;
coh = S.sig_coh;
% str = {'MinC',
% 'MinI',
% 'PC1',
% 'TinC',
% ... |
6ba6f7650f87d78b6a3cc7d1a9cff42a7caecb166f485c5aa93ef8a2ecb05cfa | MATLAB | 630 | 23 | function fx = f_OpLearn( x,P,u,in )
% re-directs VB updates to the previously chosen action
% IN:
% - x : 1st and 2nd order moments of the action-dependent beliefs
% - P : observer's prior parameters
% - u_t : previous action and feedback
% - in : []
a = u(1);%+1; % action that was chosen on the previous trial
r = u(... |
8fb60d14cc610e8a789ce1a55a68f8a380e44c662e22d65c730bef72d9e9f68f | MATLAB | 630 | 20 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% To extend the signal to reach the nb of extended channels (1000 in Negro 2016,
% can be higher to improve the decomposition)
% Input:
% eY: row-wise emg signal
% exfactor: extension factor
% Output:
% esample: extended signal
%%%%%%%%%%%... |
eaaa70e9450626e20b7c214bab7e6247188078c71da91fd8aa320e55c6900e59 | MATLAB | 630 | 33 | %{
_ _
___ _ __ __ _| |__ ___ ___ _ __| |_
/ __| '__/ _` | '_ \/ __|/ _ \| '__| __|
| (__| | | (_| | |_) \__ \ (_) | | | |_
\___|_| \__,_|_.__/|___/\___/|_| \__|
### say
**Syntax**
```
say(self,msg)
```
**Description**
U... |
4ac76ffa15766362deca3bdc2afe3ed125f7389a3c4f05f666950983e4242b00 | MATLAB | 631 | 23 | function fevalDistrDisk( funNm, jobDir, jobId )
% Helper for fevalDistr (do no call directly).
%
% USAGE
% fevalDistrDisk( funNm, jobDir, jobId )
%
% INPUTS
%
% OUTPUTS
%
% EXAMPLE
%
% See also fevalDistr
%
% Piotr's Computer Vision Matlab Toolbox Version 3.02
% Copyright 2014 Piotr Dollar. [pdollar-at-gmail.com... |
5607966b8e5e0722139f0412abd15e36c87e0cdf69005866eb723b40340ec970 | MATLAB | 631 | 20 | function img_filtered = dog_filter_graphics(img)
%returns dog filtered img
%% DoG signal enhancement/filter
tic
FILTER_SIZE_XY = 6; % for [fxf] filter
FILTER_SIZE_Z = 6;
STDXY1 = 3;%4
STDXY2 = 4;%5 % btw, spots are black not white if std1 > std2
STDZ1 = 3;
STDZ2 = 4;
% 3d DoG Gaussian filters
gauss1 =... |
bcbb1b4c9c2024e616690b9e965b30c21cdade99e51fc64fe8caad34636838c9 | MATLAB | 631 | 20 | Q = load('~/bransonlab/PoseTF/janLegTracking/35exps@20160421.lbl','-mat');
expdirs = {};
pts = [];
expidx = [];
ts = [];
for ndx = 1:numel(Q.movieFilesAll)
expdirs{ndx} = ['/groups/branson/bransonlab/mayank/PoseEstimationData/JanLegTracking/' Q.movieFilesAll{ndx}(13:end)];
lts = find(~any(any(isnan(Q.labeledpos{ndx... |
f95838a206da7ecb892cd1227e7c7745363daf294213681a4b30047d12171949 | MATLAB | 631 | 27 | function Y = localEv2HmmObs(localev)
%% Convert data in localev format to hmm obs format
% The hmm format is an nobs-by-1 cell array of d-by-T(j) observations
% The localev format is a matrix of size nobs-by-d-max(T) potentially padded
% with nans.
%
% See also hmmObs2LocalEv
%%
% This file is from pmtk3.googlecode.co... |
44906daf4e9e92fef4926ad9b4a3bfb39d76ff0faff9467493589e5a3902dd9f | MATLAB | 632 | 24 | function [p,b,c,CS]=McNemar_fast(d1,bk)
%
% This function is optimized to run McNemar on 2 sets of data that are
% already binarized. The bk array contains bookkeeping information to keep
% track of functional networks.
Npairs=length(bk);
for j=1:Npairs
b(j)=sum((d1(bk{j,1},1)).*(~d1(bk{j,1},2)));
c(j... |
786b89a0890ea4efe9be2e48a7cadc6a97d844e92b2ea4077c578e844dc6139a | MATLAB | 632 | 29 | function prediction = rbmPredict(m, testdata)
% Use RBM to predict discrete labels
% INPUTS:
% testdata(n,d) in [0,1]
% OUTPUTS
% prediction(n) in {1..C}
% This file is from pmtk3.googlecode.com
numclasses= size(m.Wc, 1);
numcases= size(testdata, 1);
F= zeros(numcases, numclasses);
%set every class bit in turn a... |
bac4c188dc2cc9c787c5b980866439fb30e01c463f47e10d4ddc2d4c0a165e7c | MATLAB | 632 | 13 | function [project_file_path, replace_path] = localize_test_project_path(linux_project_file_path)
% Map a Linux-style test project path to the local platform's path,
% and return the corresponding replace_path for projLoad. On Linux
% the path passes through unchanged and replace_path is empty. On
% Windows, /... |
bd928bd5fa5ffb170dde6aee112a1fe65b6ba130d38e1cd0c3f01f2fffa6a33b | MATLAB | 632 | 40 | % M = setdiag(M,v,[k])
% sets diagonal k of square matrix M to v
% by default, k = 0
%
% examples:
% >> setdiag(rand(2),inf)
%
% ans =
%
% Inf 0.0746
% 0.5355 Inf
%
% >> setdiag(rand(2),inf,1)
%
% ans =
%
% 0.6837 Inf
% 0.3338 0.9480
% >> setdiag(rand(3),[1,2,3])
%
% ans =
%
% ... |
e7efb473bff763e81d461ce870a1abf145506c806b01cbaca5ba87a6611e51c2 | MATLAB | 632 | 24 | function [y] = buffer_variance(data,frame,overlap,type)
% [y] = buffer_variance(data,frame,overlap,type)
% input data: input vector of data
% frame: frame size (scalar value)
% overlap: overlap size between frames (scalar value)
% type: i.e. std, mean, median, ...
if nargin<4
... |
2421a25dceb6069db26b70d5290554d1441ac7b3dcc2692ac06b16e8d3d8fe7b | MATLAB | 633 | 28 | function [x0,y0,f,g]=line_exp2par_2d ( x1, y1, x2, y2)
% !! LINE_EXP2PAR_2D converts a line from explicit to parametric form in 2D.
% ! Formula:
% ! The explicit form of a line in 2D is:
% ! (X1,Y1), (X2,Y2).
% ! The parametric form of a line in 2D is:
% ! X = X0 + F * T
% ! Y = Y0 + G * T
x0 ... |
42538d7c662b24ccf2199f421b767c49dac3679daf4e01a865a336264d56b9e5 | MATLAB | 633 | 26 | % Process the data from http://www.stat.psu.edu/resources/bydata.htm
% requires matlab 7
% Save first 2 features (height, weight) in csv format.
% Delete data which is missing values (3 cases)
fid = fopen('biometric_data.txt');
rawdata = textscan(fid,'%d%n%n%n%n%n%n%n%n',...
'headerlines', 1,...
'delimiter',... |
43a83d7a534d0b3a67b0c64ba7ecd0805a70517c21fab92bc46c8dc961833b95 | MATLAB | 633 | 32 | function evcount = wlAux_getMatrixEventCount(evmatrix)
% function evcount = wlAux_getMatrixEventCount(evmatrix)
%
% This function returns the number of events in a matrix, across all bands,
% trials, and channels.
%
% "evmatrix" is an event matrix, per EVMATRIX.txt.
%
% "evcount" is the total number of events recorded... |
b1e96748d40445ef3bcf41f4630c2a7abd0fb4a6d022b44d4199ba14c0773db0 | MATLAB | 633 | 15 | function color_array = ColorGradient(color1, color2, num_outputs)
% function ColorGradient(color1, color2, num_outputs)
% Takes any 2 colors and interpolates between them at the desired number of intervals
% Color1 or color2 must be [1,3] in size but can be normalized (0-1) or standard (0-255)
% If num_... |
f44732d5dbeb771e843a4fe5388fcdeff84f8d8ff5bc5385a9b32cb64e29f2e1 | MATLAB | 633 | 18 | function s = sum_cells(C,entries)
% sum all cells in cell arrays... all cells must be the same size
% numel(entries) == numel(C)
% if entries is specified,
% if entries is logical vector, then sum only those entries of C where entries is true
% if entries is numeric vector, then sum only those indices of C contai... |
de3c91c52d02716971620f8a7c32f59e9f220c9e90efdb0b2b8fbc03038c7f3b | MATLAB | 634 | 22 | function labels = loadMNISTLabels(filename)
%loadMNISTLabels returns a [number of MNIST images]x1 matrix containing
%the labels for the MNIST images
%
% http://yann.lecun.com/exdb/mnist/
fp = fopen(filename, 'rb');
assert(fp ~= -1, ['Could not open ', filename, '']);
magic = fr... |
e2539e3494a208c4a319acbe959d7cc6eb79241a36d97388829aa4f48c500195 | MATLAB | 634 | 26 | ncoeffs=20;strength=.001;
load randomhead
ii=floor((length(coeffs)-1)*rand(ncoeffs,1))+1;
coeffs_ran_a=coeffs;
coeffs_ran_b=coeffs;
center=[0 0 0 ];
coeffs_ran_a(ii)=coeffs(ii).*(1+randn(ncoeffs,1)*strength);
coeffs_ran_b(ii)=coeffs(ii).*(1+randn(ncoeffs,1)*strength);
skin_a=skin;skin_b=skin;
vcup_x_a=mk_vcharm(vcu... |
84128fc32ced39d9d64308b1fc5f0e5b5133c960447a293c4f16ceb7a1cdb216 | MATLAB | 635 | 21 | function ret=mscmd_exe
%MSCMD_EXE - Return the path to the mountainsort executable file
%
%This function is used internally by the mscmd_*.m files
%
% Syntax: mscmd_exe
%
% Other m-files required: none
%
% See also:
% Author: Jeremy Magland
% Jan 2016; Last revision: 13-Feb-2106
mfile_path=fileparts(mfilename('fullpa... |
9a5d7c2bf60a48a372c7c641dc0617a4358fa160919306af6c4595ced2ed59f3 | MATLAB | 635 | 34 | function text = getText(textFile)
% Extract the text from a file. The output is a cell array - each cell is a line
% from the file. See also writeText()
% This file is from pmtk3.googlecode.com
text = {};
w = which(textFile);
if ~isempty(w)
textFile = w;
end
fid = fopen(textFile);
if(fid < 0)
fprintf('Sorry ... |
9ca1faf3c0156aca90a8e5f7b6f89ad011313bb1a940692ee7e989a9cdc078e2 | MATLAB | 635 | 15 | function setup = StateSwitch_settingsResting(setup)
% settings for resting state eeg
setup.DEBUG = 0;
setup.opacity = .4;
setup.keyB = 1;
setup.ET.useET = 0;
setup.EEG.useEEG = 1;
setup.EEG.DIO.paral... |
f9a257726d125caa30209d8d3dfdead97b56b7dc3bf78b478422716a91a2cb42 | MATLAB | 635 | 18 | function Z = power(X,Y)
%POWER Elementwise power (.^) operator for a tensor.
%
% See also TENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporatio... |
162c894924941cef16e07efe97ea3705e85276db55fdaa54ddd305cbdd95b550 | MATLAB | 636 | 29 | function logp = wishartLogprob(arg1, arg2, arg3)
% logp(i) = log p(S(:, :, i) | model.Sigma, model.dof)
% logp = wishartLogprob(model, S); OR logp = wishartLogprob(Sigma, dof, S);
%
% This file is from pmtk3.googlecode.com
if isstruct(arg1)
model = arg1;
Sigma = model.Sigma;
v = model.dof;
S ... |
25c7e3d30ea17d4da0b635a4503ecb958606b51547e52be291c97f71c6e65f41 | MATLAB | 636 | 19 | function mscmd_merge_labels(timeseries_in_path,firings_in_path,firings_out_path,opts)
if (nargin<4) opts=struct; end;
if (~isfield(opts,'merge_threshold')) opts.merge_threshold=0.9; end;
if (~isfield(opts,'clip_size')) opts.clip_size=100; end;
cmd=sprintf('%s merge_labels --timeseries=%s --firings=%s --firings_out=%... |
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