sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
015c69c1f4e3942c5231bf3e030147f445bd8212a683aba1a626cf05c58136a8 | MATLAB | 681 | 34 | % D = dist2many2one( X , mu )
%
% inputs: X is an n x d matrix
% mu is a 1 x d vector
% output: D is a n x 1 vector where D(i) is the squared Euclidean
% distance between X(i,:) and mu.
function D = dist2many2one(X,mu)
% check input sizes
if ndims(X) > 2 | ndims(mu) > 2,
error('input X should be n x d, inp... |
395654fbf81581de861282e16dfdb13cf562d38606a665f165015f3ff9548691 | MATLAB | 681 | 36 | function varargout = scl_inter(varargin)
% Format
% For getting the value
% dat = scl_inter(obj)
%
% For setting the value
% obj = scl_inter(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varar... |
3d9bf4bc3666a712a503fb65c5b1e09f88db980062b0623cd62ca141074434ab | MATLAB | 681 | 16 | function plotRadialReflectanceTransmittance(model)
[X,Y] = ndgrid(model.G.x,model.G.y);
R = sqrt(X.^2 + Y.^2);
Runq = unique(R(:));
Refl = NaN(size(Runq));
Tran = NaN(size(Runq));
for i = 1:numel(Runq)
Refl(i) = mean(model.MC.NI_zneg(R == Runq(i)));
Tran(i) = mean(model.MC.NI_zpos(R == Runq(i)));
... |
43acd540a1433b051d7c8fd8440f72a89380b278ec278f70de1c575175b5c126 | MATLAB | 681 | 39 | % Demo of ICA
% This file is from pmtk3.googlecode.com
[sigTrue,mixedsig]=demosig(); % create signal using fast ICA package
[icasig, A, W] = fastica(mixedsig);
X = mixedsig';
[B, Z, evals, Xrecon, mu] = pcaPmtk(X, 4);
pcasig = Z';
figure;
for i=1:4
subplot(4,1,i); plot(sigTrue(i,:));
end
suptitle('truth')
printPm... |
44997b17c079f188efab098284488093572c0d9ce18348d41da68d1dbc02708c | MATLAB | 681 | 33 | %% Change of Variables Demo 1D
% x ~ U(-1,1), y=x^2, plot pdf of y
%%
% This file is from pmtk3.googlecode.com
xs = -1:0.1:1;
a = -1; b = 1;
%dist = UnifDist(a,b);
%px = exp(logprob(dist, xs));
px = 1/(b-a) * ones(1,length(xs));
fn = @(x) x.^2;
ys = fn(xs);
% analtyic
ppy = 1./(2*sqrt(ys));
% Monte Carlo
n=1000;
%s... |
90f1323447140eb3a46252ee49c02f6b8ab559bc1b0426e5e9de5f83202acdfe | MATLAB | 681 | 20 | function display(t)
%DISPLAY Command window display of a sptenmat.
%
% DISPLAY(T) displays the tensor with its name.
%
% See also SPTENMAT/DISP.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/Ten... |
45de92b77af5e2abcf0333fe5a374e32b7635a4c8be7425a2014552bf80ca89f | MATLAB | 682 | 27 | % HIFDE_MV_SC Dispatch for HIFDE_MV with F.SYMM = 'S' and TRANS = 'C'.
function X = hifde_mv_sc(F,X)
% initialize
n = F.lvp(end);
% upward sweep
for i = 1:n
sk = F.factors(i).sk;
rd = F.factors(i).rd;
T = F.factors(i).T;
if ~isempty(T), X(sk,:) = X(sk,:) + conj(T)*X(rd,:); end
X(rd,:) = ... |
4a4e90108263d51946308a8f4bce7a63616c21fe7f0460846773d3f12e647d41 | MATLAB | 682 | 23 | % [path, fname, extension] = myfileparts(name)
% [path, fname] = myfileparts(name)
% Same as fileparts, except that:
% if name ends with a filesep, the fname will be the last part of the path
% and
% if extension output is not specified, then extension will not be removed
% from file name.
function varargout = ... |
6add0f0a59c7492f65dff259474c1a0dfffb9aba80c662a3d1a836bd4b102748 | MATLAB | 682 | 27 | % HIFDE_SV_SC Dispatch for HIFDE_SV with F.SYMM = 'S' and TRANS = 'C'.
function X = hifde_sv_sc(F,X)
% initialize
n = F.lvp(end);
% upward sweep
for i = 1:n
sk = F.factors(i).sk;
rd = F.factors(i).rd;
T = F.factors(i).T;
if ~isempty(T), X(rd,:) = X(rd,:) - T'*X(sk,:); end
X(rd,:) = F.fac... |
1185300ed9017d2f711a103553703eca27e9e7bd22f9ca9f5ad13126c00947b2 | MATLAB | 683 | 21 | % Transform the json files obtained with OpenPose into a single MAT file.
function openPoseJSon2Mat(jsonTargetDir,saveTargetName)
fprintf('Transforming to mat file...\n')
jsonFiles = dir(jsonTargetDir);
jsonFiles([jsonFiles.isdir]==1) = [];
openBodyData_all = struct;
for iFrame=1:length(jsonFiles)
bodyD... |
778a0f509e67469fd43ae188a0b24cc330da055934f50845c922f48c5230d1d3 | MATLAB | 683 | 24 | function labels=cookLabels(labelsRaw)
% Make sure the labels only contains the fields we want from the raw labels.
% ALTODO: remove me or put in Labels
nLabels=length(labelsRaw);
labels = ...
struct('t0s',cell(1,nLabels), ...
't1s',cell(1,nLabels), ...
'names',cell(1,nLabels), ...
'flies'... |
89dea057f7924389a6c6157b010a4990eae417cf42202a7d560470b13c927978 | MATLAB | 683 | 18 | function [coherence, skew, roiSize] = evaluateROIs(A, C, patchSize)
% [coherence, skew, roiSize] = evaluateROIs(A, C, patchSize)
% Computes coherence, skew, and size of an ROI
% Coherence is computed on all pixels in the FOV, so small ROIs will be
% biased towards high values due to most pixels being 0
... |
acd29322686dc272913a52c6c4d25662f96c0b6b0dedc73a0d6fc3fd2b042e7e | MATLAB | 683 | 23 | seed = 0; rand('state', seed); randn('state', seed');
data = load('mpg.dat');
N = size(data,1);
perm = randperm(N);
%data = data(perm,:); % remove any possible ordering
x = data(:, 1:7);
y = data(:,8);
[n,d] = size(x);
Xtrain = x(1:300,:); ytrain = y(1:300);
Xtest = x(301:end,:); ytest = y(301:end);... |
d025c406e0fb13d6b96ff8cd2c28f247bab7e062d7620d59d8eeccdb40f6a3d9 | MATLAB | 683 | 29 | function gg_out = getAxesChildren(h)
% function gg = getAxesChildren(h)
% gets all children of a function handle that are either axes, color bars
% or other objects. Aims to ignore objects that aren't relevant for visible
% formatting such as hidden items, context overlays etc.
% Shaihan Malik Oct 2024
gg = get(h,'Chil... |
d5c7f0b8f9220f27bf2fbcef3e71c0d92352966b541b1628b7527da712291e09 | MATLAB | 683 | 31 | function v=simpvol(p,t)
%SIMPVOL Simplex volume.
% V=SIMPVOL(P,T)
% Copyright (C) 2004-2006 Per-Olof Persson. See COPYRIGHT.TXT for details.
switch size(p,2)
case 1
d12=p(t(:,2),:)-p(t(:,1),:);
v=d12;
case 2
d12=p(t(:,2),:)-p(t(:,1),:);
d13=p(t(:,3),:)-p(t(:,1),:);
v=(d12(:,1).*d13(:,2)-d12(:,2).*d13(... |
eb0cbc0fa6d30eaaba27750eb16f0fa7ae0bc6fab0974983ad3fc831ef824aa1 | MATLAB | 683 | 20 | function display(t)
%DISPLAY Command window display of a tensor.
%
% DISPLAY(X) displays a tensor with its name.
%
% See also TENSOR, TENSOR/DISP.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/T... |
fcb27d07fb3ba177b017ec49e18d2c96ce62f7af61529f6e86acfdc8104bce9f | MATLAB | 683 | 28 | function str = printand(strs, quote)
% PRINTAND prints a single or mutiple strings as "x1, x2, x3 and x4". If there is
% only one string, that string is returned without additional formatting.
%
% See also PRINTOR
if nargin<2
quote = false;
end
if quote
if numel(strs)>2
str = sprintf('''%s'', ', strs{1:(end-... |
4aa16407207ae64935b9bcbd1b892bdaf5532f9f2c1112660766d0f1c9337a45 | MATLAB | 684 | 33 | clc
clear
close all
rootdir = 'C:\Users\fmora103\iCloudDrive\Desktop\Mauricio\Trajectories-main\mouse_track\experiments\preliminary\mouse_6';
files = dir(fullfile(rootdir,['*.mat']));
for n=1:length(files)
load([files(1).folder '\' files(n).name])
files(n).name
clf
plot(r_arena_holes(:,1),r_arena_ho... |
699d00b2262e644a1ab1d28edce1d25c3e6133406d4d385355606bcb5be99576 | MATLAB | 684 | 25 | function S = struct_mfile_reference(mfile,struct_name,strs)
% S = struct_mfile_reference(mfile,struct_name,strs)
% AF 11/1/01
pattern = [struct_name '.'];
if (~isempty(mfile))
strs = grep(mfile,pattern);
end
S = [];
for i = 1:length(strs)
inds = strfind(strs{i},pattern);
for j = inds(:)'
start_field =... |
86a2a818fbee9589ddab7fb58f32be30ac647bcd116f7e72882c45a85d0615a2 | MATLAB | 684 | 24 | function V = value_determination(p, T, R, discount_factor)
% VALUE_DETERMINATION Solve Bellman's equation for a fixed policy
% V = value_determination(p, T, R, discount_factor)
S = size(T,1);
A = size(T,2);
% Extract the part of T and R which is specific to this policy
Tp = zeros(S,S); % Tp(s,s') = T(s, p(s), s')
Rp... |
d21ff182c21425d128dbcb4a6215ad322f0cd1a0f3480b01ba8323d882430edc | MATLAB | 684 | 23 | % checks if a given list
% of files is consecutively numbered.
% throws an error if not
function checkConsecutive(allfiles)
allfiles = {allfiles.name};
idx = all(~diff(char(allfiles(:))));
common_stub = allfiles{1}(1:find(~idx,1,'first')-1);
seq_idx = NaN(length(allfiles),1);
for i = 1:length(seq_idx)
this_fil... |
ec6ea4aeb9276e5501e994f775711bf4be1249a057d4759f46ac468357c9f656 | MATLAB | 684 | 29 | function out = prepareArgs(args)
% Convert a struct into a name/value cell array for use by process_options
%
% Prepare varargin args for process_options by converting a struct in args{1}
% into a name/value pair cell array. If args{1} is not a struct, args
% is left unchanged.
% Example:
% opts.maxIter = 100;
% opts.v... |
0b1158ea71fc3bb26c98f19a5dd26f80e9dfd87d3533a7b4eaf9c6950edafabf | MATLAB | 685 | 29 | function [X, y] = mixDiscreteSample(T, mixWeight, nsamples)
% Sample nsamples from a mixture of discrete distributions.
% X(i, :) is the ith sample generated from mixture y(i).
%
%% INPUTS:
%
% T is a matrix of size nmix-nObsStates-d
% mixWeight is a stochastic vector of size 1-by-nmix
%% OUTPUTS:
% X is of size nsam... |
4dae0d107eda4eed467540752aa33ab1ee97f7ea09f723c39c53f3798725abf6 | MATLAB | 685 | 28 | function r = circ_dist(x,y)
%
% r = circ_dist(alpha, beta)
% Pairwise difference x_i-y_i around the circle computed efficiently.
%
% Input:
% alpha sample of linear random variable
% beta sample of linear random variable or one single angle
%
% Output:
% r matrix with differences
%
%... |
6321614c33599dbd694c2a37fdcc58184ac235357755e6fd4078d70634910fcd | MATLAB | 685 | 20 | function A = double(X)
%DOUBLE Convert tensor to double array.
%
% A = double(X) converts X to a standard multidimensional array.
%
% See also TENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkol... |
7fffc0105a8e158e1c2a16952f953d43ad9819e4fb137c0a758566ab9265e252 | MATLAB | 685 | 20 | function X = full(X)
%FULL Convert to a (dense) tensor.
%
% FULL(X) returns X, i.e., does nothing.
%
% See also TENSOR, SPTENSOR/FULL, KTENSOR/FULL, TTENSOR/FULL.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandi... |
c29e2bd3edee58f75d006eedf865d4013509155fd77d4e8a8d83169fe010ea67 | MATLAB | 685 | 18 | function [X, y] = createXORdata(doplot)
%% Generate noisy XOR data
% This file is from pmtk3.googlecode.com
if nargin < 1, doplot = false; end
setSeed(0);
off1 = gaussSample(struct('mu', [1, 1], 'Sigma', 0.5*eye(2)), 20);
off2 = gaussSample(struct('mu', [5, 5], 'Sigma', 0.5*eye(2)), 20);
on1 = gaussSample(struct('m... |
e63057d93c6c25fe410e05699684bc86f1e0deefda5d4fdd0d24d6bd29d44dc6 | MATLAB | 685 | 27 | function [yes_or_no] = isBRODMANN(elec_number, elec_label_list, bnumber_list)
%createColormapFromAnnotations - Creates a colormap for Annotation of the
%Surface
% surface - Surface Data object
% returns:
% annotation_remap - remapped annotations from 1 to max
% cmap - colormap associated with annotations
% See ... |
f1a967565db18855597ff5468139239c3331aa188ebe8280f21a3c0d3f0cd4f8 | MATLAB | 685 | 29 | function r = circ_dist(x,y)
%
% r = circ_dist(alpha, beta)
% Pairwise difference x_i-y_i around the circle computed efficiently.
%
% Input:
% alpha sample of linear random variable
% beta sample of linear random variable or one single angle
%
% Output:
% r matrix with differences
%
%... |
020a5fe31c64a798c6f2479cca51fd149f3fa35c98f9759565633f2fca27bf55 | MATLAB | 686 | 19 | function n = ndims(t)
%NDIMS Return the number of dimensions for a ttensor.
%
% NDIMS(T) returns the number of dimensions of tensor T.
%
% See also TTENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/... |
1675aaf4a265cf16deeb48b4e62efc03e63536a66106292e726b565dd11d31a7 | MATLAB | 686 | 28 | function p = isprefix(short, long)
% Return true iff the first input is a prefix of the second
% The second arg may also be a cell array of strings, in which case, each
% is tested. CASE SENSITIVE!
%
% If the second argument is not a string, p = false, it does not error.
%
% EXAMPLES:
%
% isprefix('foo','foobar')
% a... |
f93359b415dddb13b1933c8fb9532aa267a648760b583a683d29322e10de06ce | MATLAB | 686 | 21 | % ReplicateData.m
% Sarah West
% 4/13/22
% Replicates data for use with RunAnalysis.m. Uses a string cell array as
% input for dimensions.
function [parameters] = ReplicateData(parameters)
% Display progress message to user.
MessageToUser('Replicating ', parameters);
toReplicate_string = CreateStrin... |
1209a7d01b8413e1c0212be78e54cc10e5d01045597eda307b00ae3200cfce84 | MATLAB | 687 | 33 | function X=ms_normalize_channels(X)
%MS_NORMALIZE_CHANNELS - Normalize the data so each channel has unit variance
%
%Consider using ms_whiten or mscmd_whiten
%
% Syntax: [Y] = ms_normalize(X)
%
% Inputs:
% X - MxN array of raw or pre-processed data
%
% Outputs:
% Y - MxN array of normalized data
%
% Other m-file... |
63c1bfc30fc6acdc04ef08fc44493aa42e6edb68403dc3b74c38b6b98d1adc3a | MATLAB | 687 | 16 | % HIFIE3X Hierarchical interpolative factorization for second-kind integral
% equations in 3D.
%
% This is the essentially the same as HIFIE3 but with certain modifications
% that make it more suitable for second-kind integral equations or matrices
% that otherwise have high contrast between the diag... |
7a06cedf7105dac9a1e5819aba8284e93eb877eedcc62ebfd3cc5940c6afd55e | MATLAB | 687 | 26 | function [vtxs,nvtxs] = fs_read_label(labelf)
% [vtxs,nvtxs] = fs_read_label(labelf)
%
% Reads the indices of the vertices of a Freesurfer's label.
%
% Input
% labelf: A Freesurfer's label file.
%
% Output
% vtxs: Indices of the vertices (1-based).
% nvtxs: The number of vertices in the label.
%
% $Revis... |
be1965a1961f94e0cb58e89f708d7787ee04c0ddb6fa1472f6b514dfef05a1b1 | MATLAB | 687 | 38 | % demo for log-normal priors
clear all
close all
g_fname = @g_exp; % gx = phi(2)*exp(phi(1)*in.x)+phi(3);
f_fname = [];
priors.muPhi = [0;1;0];
priors.SigmaPhi = zeros(3,3);
priors.SigmaPhi(1,1) = 0.1;
priors.a_alpha = 0;
priors.b_alpha = 0;
priors.a_sigma = Inf;
priors.b_sigma = 0;
inG.x = 1;
u = [];
options.inG ... |
d0cef91dec8c511014924267443fc9a8636d9d508845cf4f94fdb02cb65238ed | MATLAB | 687 | 32 | function wlAddPaths
% function wlAddPaths
%
% This function detects its own path and adds appropriate child paths to
% Matlab's search path.
%
% No arguments or return value.
% Detect the current path.
fullname = which('wlAddPaths');
[ thisdir fname fext ] = fileparts(fullname);
% Add the new paths.
% Don't worry... |
dc9f43c9ab963edcd60725e49faeb321f89ad6b8b85ad988268fd3dff894a080 | MATLAB | 687 | 16 | % HIFIE2X Hierarchical interpolative factorization for second-kind integral
% equations in 2D.
%
% This is the essentially the same as HIFIE2 but with certain modifications
% that make it more suitable for second-kind integral equations or matrices
% that otherwise have high contrast between the diag... |
f020ea944ebe45aa3deb4456f9962247e353b2bfdd84a6573ec71856f2b7fdba | MATLAB | 687 | 19 | function A = double(T)
%DOUBLE Convert ttensor to double array.
%
% A = double(T) converts T to a standard multidimensional array.
%
% See also TTENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgk... |
50add9a51071f2aaa9bc528f1ed5bd8bde85a02969d68559ac53e8fcba3ed39a | MATLAB | 688 | 23 | % Modify a paths struct and re-save for moving to a different computer
% assuming that you are starting from fcp_4_beamforming
% need to transfer from other machine:
% - analysis/PID/ft_meg_fullyProcessed.mat
% - config/[all files]
% change project path locations
new_project_path = '/home/jtseng/katie';
paths_loc... |
592bc95997a94bc27c750dd2decb248904d127c3cdcfbe3ffe9539db9ccacc82 | MATLAB | 688 | 43 | function [LAN latency ]= search_lat(LAN)
% 14.4.2009 prueba
%
%
%
if iscell(LAN)
for lan = 1:length(LAN)
[LAN{lan} latency{lan} ]= search_lat_st(LAN{lan});
end
else
[LAN latency ]= search_lat_st(LAN)
end
end
function [LAN latency ]= search_lat_st(LAN)
mn = 0
my = 0
minor = [];
mayor = [];
for i = 1:le... |
8c6bf5fd561d2070aaa246d1e9047113f43846d1a8b12331f548370112d8ca45 | MATLAB | 688 | 25 | function text = pmlExtraCodeLatex()
% Generates the latex code for the extra demos
% This file is from pmtk3.googlecode.com
root = fullfile(pmtk3Root(), 'bookDemos');
cd(root);
d = cellstr(ls());
d = filterCell(d, @(c)~startswith(c, '.'));
text = cell(2, 1);
for i=1:numel(d)
cd(d{i});
if exist('.\extra', 'fi... |
e7eb0c8e37997142cc1e765b7a416c8abb050d8773e5f70ff0c5119d70a1a918 | MATLAB | 688 | 25 | function [Xu] = VBA_conv2glm(u,tau)
% transforms input times series into a GLM matrix for convolution model
% function [X] = VBA_conv2glm(u,tau)
% Note that a constant term is added to the model, which means that the GLM
% convolution model contains nu*tau+1 parameters.
% IN:
% - u: nuXnt input times series
% - tau... |
e8b2c3c9411f3d47fd248a09819e6803b414c724542fa9b7ba60454fcd73e9b7 | MATLAB | 688 | 20 | function positions=extract_video(varargin)
% If varargin = 'targets', run code to find all targets (all pixels rather
% than just the position based on the largest region)
[data,timestamps,~]=read_neuralynx_file('VT1.nvt');
timestamps=1e-6*timestamps; %convert to seconds
if strcmp(varargin,'targets')
disp('extract... |
1de7f93f35424cb055ed7bfa0a7f6d4fa3edfb88a46006521f5bfe126e64dc2e | MATLAB | 689 | 24 | classdef ShapeAugOrientation
enumeration
RAW % Shapes are used as-is
RANDOMIZED % Shapes are randomized to an arbitrary orientation
SPECIFIED % Shapes are oriented to known orientations theta
end
methods (Static)
% Factory utility, create SAO based on CPR params
function obj = createPerPar... |
433b6ee8b2e6b7a7ac216156c55b146e2f532de391271284678f63a58a767bc3 | MATLAB | 689 | 31 | function h = height_triangle(a,b,c)
% HEIGHT_TRIANGLE Calcultes triangles heights.
%
% SYNTAX:
% [H] = HEIGHT_TRIANGLE(A,B,C)
% HEIGHT_TRIANGLE(A,B,C)
%
% [H] = HEIGHT_TRIANGLE(A,B,C)
% - A, B and C - are m by 2 matrices of (x,y) cartesian coordinates
% of vertices of m tetrahedrons.
% - H - i... |
77b3f4b75edd9341baafac1575df2e72eb73b280a572c2b975fd09eddc29af94 | MATLAB | 689 | 27 |
% _ _
% ___ _ __ __ _| |__ ___ ___ _ __| |_
% / __| '__/ _` | '_ \/ __|/ _ \| '__| __|
% | (__| | | (_| | |_) \__ \ (_) | | | |_
% \___|_| \__,_|_.__/|___/\___/|_| \__|
%
% this is a plugin for crabsort.m
% computes the PCA on the spike shape, and peak amplitude
% an... |
b1abdaaf9e48a5418c1fe9cc6e1a13e349f4dac22276f7a73bfeda826970efdb | MATLAB | 689 | 27 | % HIFDE_SV_NC Dispatch for HIFDE_SV with F.SYMM = 'N' and TRANS = 'C'.
function X = hifde_sv_nc(F,X)
% initialize
n = F.lvp(end);
% upward sweep
for i = 1:n
sk = F.factors(i).sk;
rd = F.factors(i).rd;
T = F.factors(i).T;
if ~isempty(T), X(rd,:) = X(rd,:) - T'*X(sk,:); end
X(rd,:) = F.fac... |
4de1cd0206d2d926589dccfb34378f7e2496956e57574fc696cba69f4a032033 | MATLAB | 690 | 24 | function success_code = calculateDescriptorsInParallel()
loadParameters;
run_num_list = 1:params.NUM_ROUNDS;
arg_list = {};
postfix_list = {};
for run_num = run_num_list
arg_list{end+1} = {run_num};
postfix_list{end+1} = num2str(run_num);
end
conditions = conditions_for_c... |
54f4ebe3c93c3fa22128000956401fe0dcbdacfeb3a81ed298db6351dcfc0d67 | MATLAB | 690 | 39 | function [s, b] = getFileSize(f)
% Return the size of a file as a formatted string
% The size is in bytes if less than a KB, KB if less than a MB, MB if less
% than a GB, otherwise GB. The string includes the units. If the file
% cannot be found, an empty string is returned.
%
%% Example
%
% s = getFileSize('mnistAll.... |
623ae77cc50c13339daf9fb01c0919a2135d545414fe80925acdc03085b09efe | MATLAB | 690 | 16 | %% 统计特征 | statistical features
%% Log Root Sum Of Sequential Variation
% The log root sum of sequential variations (LRSSV) is proposed in this paper to measure the sequential variations between the samples of the signal.
% X: single channel EEG signal (either a row vector or a column vector)
%% Reference
% [1] M... |
8e81e79440a9554ea0d404b7aa701b091fab0f6a0c55ceb8177b6dda6053f603 | MATLAB | 690 | 23 | function [z] = VBA_fisher (r, inverse)
% // VBA toolbox //////////////////////////////////////////////////////////
%
% [z] = VBA_fisher (r, inv)
% apply Fisher transformation to Pearson correlation coefficient
%
% IN:
% - r: correlation to transform
% - inverse: flag to apply the reverse transformation (default = f... |
adff17c727c1446413d95db2e3550eb9c6c8355a898c124cc23e6a6aab4b8df8 | MATLAB | 690 | 30 | function pred = discretePredictMissing(model, data)
% data(n,j) is value of node j, can be NaN if missing
% pred(n,j,k) is predicted probability
% pred(n,j,v) = 1 if data(n,j)=v
% model.T(k,t)
[N D] = size(data); %#ok
nStates = model.K;
if isscalar(nStates), nStates = model.K*ones(1, D); end
% First make delta func... |
c71a55fa35b9cab27fbb1dd16f6c9d810cb28b78454986badb10cafc1842d384 | MATLAB | 690 | 29 | % saveSDPToNNdata
% saves spike detection parameters from
% crabsort into NNdata
function saveSDPToNNdata(self)
channel = self.channel_to_work_with;
if isempty(channel)
disp('No channel selected')
return
end
if self.common.NNdata(channel).sdp.isdefault
% we write to NNdata only if it has default values. thi... |
e93a04eb4c2750b3a062152d15cc4ebc40089d796a21a7659d21eb0d4cc68e1e | MATLAB | 690 | 24 | function Tbig = bsxTable(fn, Tbig, Tsmall, bigdom, smalldom)
%% Apply a binary function to two multidimensional vectors using bsxfun
% reshaping and virtually expanding the smaller table as needed
%
% The tables are matched up according to smalldom and bigdom
% smalldom must be a subset (but not necessarily a subsequen... |
ee5f3acfcf9ff5f58b4d5755cc9ad1994f01a0fa49bb66ee6b5ec19f8ab65746 | MATLAB | 690 | 29 | function [cc,nflies] = AssignPixels(isfore,diffim,trx,t)
[y,x] = find(isfore);
X = [x(:),y(:)];
w = diffim(isfore);
mu = zeros(0,2);
S = zeros(2,2,0);
for fly = 1:numel(trx)
if t > trx(fly).endframe || t < trx(fly).firstframe
continue;
end
i = trx(fly).off + t;
mu(end+1,:) = [trx(fly).x(i),trx(fly).y(i)]; ... |
fcf8fab4ae6b7f9bccf27e10475dc16fdb284b9c00e89652f10af8f9a6a53c0b | MATLAB | 690 | 36 | function [anybad] = check_spm_matfiles(P)
% Check a list of SPM-style images to see if they all have the same
% space, dims.
%
% :Usage:
% ::
%
% [anybad] = check_spm_matfiles(P)
%
V=spm_vol(P);
for i=2:length(V),
chk = V(1).mat - V(i).mat; chk = chk(:);
chk = chk(1:end-1); % eliminate SPM scal... |
1763130803d1dd70fafe45f2284aeaea2d90910eb96dcea25adebb9abc68788f | MATLAB | 691 | 42 | function updatefly(h,x,y,theta,maj,min)
% draw an isosceles triangle with center (x,y)
% with rotation theta
% with height maj*4
% with base min*4
if isstruct(x),
trx = x;
t = y;
x = trx.x(t);
y = trx.y(t);
theta = trx.theta(t);
maj = trx.a(t);
min = trx.b(t);
end
if 0,
ellipseupdate(h,maj*2,min*2... |
7395603335a23af1c80a1789126964ee3bdc5348a28331b19cbc91fbc485178d | MATLAB | 691 | 26 |
% How the draw potentials on the head
load clab_example;
sa=prepare_sourceanalysis(clab_example);
% sa.elec2head is a matrix which maps values
% on electrodes to values on the head
% it was calculated (in perpare_souceanalysis by
% elec2head=prep_v2head(sa.locs_3D,sa.head.vc,.5));
y=sa.locs_3D(:,1:3);yn=y;
yn(... |
16df1a8dfbd63ccd66653020f108ca3380ae364fee743e84076d7c1ca61f5d17 | MATLAB | 692 | 25 | % opens a figure and sets the defaults for position and size
function [hFig] = SetupFigure_220724(FigSizeInch)
FigSize = [3.5 5];
if nargin > 0
FigSize = FigSizeInch;
end
paperSize = FigSize+2;%[8.5 11];
paperPosition = [1 1 FigSize];
%
hFig = figure;
set(hFig,...
'Defau... |
1a553331be40396287464e178848ae59d169f7d3b74d515c81829d82825bd14a | MATLAB | 692 | 30 | %% pro_AddInput: Add a model input to the project
%
% Usage:
% pro = pro_AddInput(pro, inputpdf, name, analyse)
%
% Inputs:
% pro project structure
% inputpdf reference to a @(N)pdf(N,...)
% name name of the input
%
% Output:
% pro project structure... |
2aa7c316cea1433dc31e353e779ba18689e0b270c96eeb587911716cf54950b7 | MATLAB | 692 | 45 | function def = get_landef(r,newr)
%
% LAN def function
%
% v.0.1
%
% Documentation in \tex\lan.pdf
% only in spanish
%
% 14.03.2012
% Pablo Billeke
%path
path = mfilename('fullpath');
path((end-10):end) = [];
% lan def
try
load landef def
if nargin ==2
eval(['def.' r ' = newr;'])
... |
955268b3f77208a498f284dcdb9220bc90cd93edb893a0a0487e21cb6e0fec05 | MATLAB | 692 | 29 | function modelHgivenV = studentCondition(model, v, visValues)
% p(xh|xv=visValues)
% This file is from pmtk3.googlecode.com
mu = model.mu(:);
Sigma = model.Sigma;
dof = model.dof;
d = length(mu);
b = visVars;
a = setdiff(1:d, b);
dA = length(a);
dB = length(b);
if isempty(a)
muAgivenB = []; SigmaAgivenB = [... |
0fb39ac9e00302c3e09837d8258cb36404b7f858e4a80c10bed84ff7a48b636d | MATLAB | 693 | 26 | function showImmediateToolboxDependencies(fname)
%% Display the immediate toolbox dependencies of a function
% This file is from pmtk3.googlecode.com
if nargin == 0;
fname = currentlyOpenFile(true);
end
D = depfun(fname, '-toponly', '-quiet');
[TB, NTB] = partitionCell(D, ...
@(c)~startswith(c, fullfile(matl... |
2d4f940be96d13f253d0ba6a13b4c4f502a1dc64708eacc000306037af613ed0 | MATLAB | 693 | 23 | function exportname = qualitycheck_exportname(dataset)
% QUALITYCHECK_EXPORTNAME is used in ft_qualitycheck and the associated cron job
[p, f, x] = fileparts(dataset);
if ft_filetype(dataset, 'ctf_ds')
try
info = read_ctf_hist(dataset);
c = datevec(info.startdate);
% construct something like 20070320_1... |
5928eb6bfeaeca42b792bbe98d7dccad82b6ce39cf1f3948ce51fc0427c45255 | MATLAB | 693 | 16 | function setup = StateSwitch_settingsTask_MR(setup)
% settings for task eeg
setup.DEBUG = 1;
setup.opacity = .99;
setup.keyB = 1;
setup.ET.useET = 0;
setup.EEG.useEEG = 0;
setup.EEG.DIO.parallelTrigg... |
82f8a491bb6a03dc644c06fad86b39734c4e5fafe5b039cdc16941689f2cebc6 | MATLAB | 693 | 39 | function X = invGammaSample(arg1, arg2, arg3)
% Sample from an inverse gamma distribution with parameters a, b
% X = invGammaSample(model, n); or X = invGammaSample(a, b, n);
% This file is from pmtk3.googlecode.com
if isstruct(arg1)
model = arg1;
a = model.a;
b = model.b;
if nargin < 2
n = 1... |
bb5bfb4c162b814641823170b7d8baf234295639603cfe9a938c780b0fb1a5d6 | MATLAB | 693 | 37 |
clear
% close all
Monkey = ['Monkey1']; % ['Monkey1' or 'Monkey1']
%---------------
AlignBase = [{'PER_ON'}];
%---------------
Align = [{'GO'} {'Touch'} ] ;
%---------------
Signal = ['beta'] % ['beta' or 'gamma']
%---------------
for base = 1:length(AlignBase)
for al = 1:length(Align)
... |
7fe25730ad35f96845e0ef4e1e2917f2547742c3e94f7757b57b474cc426f73d | MATLAB | 694 | 20 | function display(t)
%DISPLAY Command window display of a sparse tensor.
%
% DISPLAY(T) displays the tensor with its name.
%
% See also SPTENSOR, SPTENSOR/DISP.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov... |
8e208e4be506fad1f1842ac0ceb21596e5192ce95b768cea4850aca17e9400ac | MATLAB | 694 | 21 | function n = norm(T)
%NORM Frobenius norm of a tenmat.
%
% NORM(X) returns the Frobenius norm of a tenmat.
%
% See also TENMAT.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Cop... |
97e60731c3c4fcc9ad06c9c16be8bc0b8946729a5ca7006c804062b2a1d5a212 | MATLAB | 694 | 22 | function [featureLexicon,animalType]= ...
featureLexiconFromFeatureLexiconName(featureLexiconName)
[featureLexiconNameList, ...
featureLexiconFileNameList, ...
featureLexiconAnimalTypeList] = ...
getFeatureLexiconListsFromXML();
indexOfFeatureLexicon= ...
find(strcmp(featureLexiconName,featureLexiconNameL... |
bc0e3972982f1900a182d71dca7606642a4cac4aa3a17302b480e649cb3ebc92 | MATLAB | 694 | 21 | function n = norm(T)
%NORM Frobenius norm of a tensor.
%
% NORM(X) returns the Frobenius norm of a tensor.
%
% See also TENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Cop... |
5c25309ab596ae94d5ef2271496511968a26cf42424d88360c5021664e99e2a5 | MATLAB | 695 | 22 | function nrm = norm(T)
%NORM Frobenius norm of a sparse tensor.
%
% NORM(T) returns the Frobenius norm of a sparse tensor.
%
% See also SPTENSOR, NORM.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgko... |
9ef3d96be965cb797b7cd2bfd0cf5004f7e3a0f4eeebc9d72bb3a1ba581a2446 | MATLAB | 695 | 25 | function logp = markovLogprob(model, X)
% logp(i) = log p(X(i, :) | model.pi, model.A)
% model.pi(j) = p(S(1) = j) - dist over starting states -
% model.A(j, k) = p(S(t) = k | S(t-1) = j) - state transition matrix -
%
% where S(t) denotes the state at time step t.
%
% X(m, n) is in 1:length(mode... |
c2839693ec9029c7732dcd9bd5db3040d149e781a226194b26e22ba9df820650 | MATLAB | 695 | 36 | function [gx,dgdx,dgdp] = g_softmax4decoding(Xt,P,ut,in)
eta=P;
Xt = Xt+eta;
beta=100;
sx = length(Xt);
dgdx=zeros(sx,length(Xt));
dgdp=zeros(length(P),length(Xt));
% if size(Xt,1) >1
%
% % choice
% ex = exp(beta*Xt);
% gx=ex/sum(ex);
%
% % derivative wrt state
% dgdx(:,:)=diag(beta*gx... |
c45ade27561333464bf3107e5582fd9a7b56dc9df4408d3835a1b26281c997b8 | MATLAB | 695 | 38 | %% Conjugate Function
%
%%
% This file is from pmtk3.googlecode.com
function conjugateFnExp
f = @(x)x-(x-x.*log(-x));
domain = -1:0.0005:0;
figure; hold on;
m = -1/exp(1);
plot([m,m],[0,f(m)],'-k','LineWidth',4);
plot(domain,f(domain),'-r','LineWidth',5);
axis([-1 0 0 0.4]);
set(gca,'XTick',[-1 -0.5 0],'YTick',[0 ... |
cacff366c1233f70d7918095e2e6e0a84235970a13e0fd98baf0ae0ad561e2f8 | MATLAB | 695 | 17 | function bf10 = binombf(k,n,p)
%
% bf10 = binombf(r,n,p)
%
% Calculates Bayes factor for binomial test with k successes, n trials and base probability p.
% This is based on the Bayes Factor example on Wikipedia (http://en.wikipedia.org/wiki/Bayes_factor).
% It is the same as the default prior assumed by Rouder's ... |
d56b8ebc5df6294160f8b8f8f9f899383da016d8ab91801792659237a6439e76 | MATLAB | 695 | 15 | function TSdeletesubject(SubId)
% deletes a subject from the Experiment structure, eliminates its ID # from
% the Experiment.Subject field and reduces the Experiment.NumSubjects by 1
%
%Syntax: TSdeletesubject(SubId)
% NB the input arguments is the subject's ID# --NOT its index #
% Also IF THE STRUCTURE CONTAINS FIELD... |
17be00c6fc0fae46f5b9ee424047e9f6371a3beee7589793dc29ad69cc7e6efb | MATLAB | 696 | 27 | function centerOnParentFigure(fig,parentFig,varargin)
[setParentFigUnitsPx] = myparse(varargin,...
'setParentFixUnitsPx',false ... % for dealing with UIFigure/appdesigner
);
if setParentFigUnitsPx
parentUnitsOrig = get(parentFig,'Units');
set(parentFig,'Units','pixels');
end
unitsOrig = get(fig,'Units');
set(... |
980a3230068b1c336dfec6e350f6c4dcea2d06cd9d9e81fbfd32d6cd7565190f | MATLAB | 696 | 33 | function [tffound,f] = seekSmallLposThresh(lpos,f0,df,th,cmp)
% lpos: [npts x nfrm]
% f0: starting frame
% df: frame increment
% th: threshold
% cmp: comparitor
%
% tffound: logical
% f: first frame encountered with (non-nan) label that satisfies
% comparison with threshold, applicable if tffound==t... |
6675d41c17555cb0138b4b8851c84a247ab621e731e9cc13422f5d398e983d9c | MATLAB | 697 | 21 | function feat1= NNCAE(data)
[N, n] = size(data);
X = data;
% Define the autoencoder architecture
inputSize = size(data, 2); % Input size
hiddenSize = 128; % Number of units in the hidden layer
% Create and train the autoencoder
autoencoder = feedforwardnet(hiddenSize);
autoencoder.layers{1}.transferFcn = 'p... |
c0d9d4dab9eb08dd8016b79a77055cbe13810a7bb56c686157764af1ea026b88 | MATLAB | 697 | 21 | function s = tt_intvec2str(v)
%TT_INTVEC2STR Print integer vector to a string with brackets.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others.
% http://www.sandia.gov/~tgkolda/TensorToolbox.
% Copyright (2015) Sandia Corporation. Under... |
cf1ed9e05d38639434c469c281bd7a703c14d7851c325181283259cc12208415 | MATLAB | 697 | 14 | function mua = calc_mua(wavelength,S,B,W,F,M)
persistent muadeoxy muafat muamel muaoxy muawater musp nmLIB
if isempty(muadeoxy)
load('spectralLIB.mat','muadeoxy','muafat','muamel','muaoxy','muawater','musp','nmLIB'); %#ok<NASGU>
end
mua_deoxy = interp1(nmLIB,muadeoxy,wavelength);
mua_fat = interp1(nmLIB,m... |
d8c3723cd245c6c530acf8003d505c95572fdba67b2344e9d8971f0fc528c95f | MATLAB | 697 | 35 | function varargout = offset(varargin)
% Format
% For getting the value
% dat = offset(obj)
%
% For setting the value
% obj = offset(obj,dat)
% _______________________________________________________________________
% Copyright (C) 2008 Wellcome Trust Centre for Neuroimaging
%
% $Id$
if nargin==2,
varargout{1} =... |
5102678261d4672188d9a3e77d831376c7feeb31ec0c1f7a6cdde1b9ff639be7 | MATLAB | 698 | 29 | % RSKELF_MV_NN Dispatch for RSKELF_MV with F.SYMM = 'N' and TRANS = 'N'.
function X = rskelf_mv_nn(F,X,mode)
% initialize
n = F.lvp(end);
% upward sweep
if bitget(mode,1)
for i = 1:n
sk = F.factors(i).sk;
rd = F.factors(i).rd;
X(sk,:) = X(sk,:) + F.factors(i).T*X(rd,:);
X(rd,:) =... |
753b822d1cc1e1fec8be8916ae5f4b1eca83901b23e8210fca4b56e7037f91d3 | MATLAB | 698 | 17 | echo off
%
% The SUBPLEX method is a generalization of the Nelder-Mead Simplex (NMS)
% method. It works by decomposing a high-dimensioned problems into
% low-dimensioned sub-spaces which are easily handled by NMS.
% Because of its relationship with NMS, SUBPLEX retains the advantages
% of NMS on noisy functions.
%
... |
b2989a7c43c475adbb2cb4c52dc46eb10e4dca3880402bb53a914198820276a3 | MATLAB | 698 | 29 | % RSKELF_SV_NN Dispatch for RSKELF_SV with F.SYMM = 'N' and TRANS = 'N'.
function X = rskelf_sv_nn(F,X,mode)
% initialize
n = F.lvp(end);
% upward sweep
if bitget(mode,1)
for i = 1:n
sk = F.factors(i).sk;
rd = F.factors(i).rd;
X(rd,:) = X(rd,:) - F.factors(i).T'*X(sk,:);
X(rd,:) ... |
bae53d233c7a36203369216646a0bf6784fa0233787c207681184efa309c2528 | MATLAB | 698 | 29 | function ell = getellipse(hfig,varargin)
[color] = myparse(varargin,'color','r');
fprintf([' Use normal button clicks to add points. A shift-, right-, or\n',...
' double-click adds a final point and ends the selection.\n',...
' Pressing RETURN or ENTER ends the selection without adding\n',...
' a final poi... |
ff80854e13997dbc134b170578b1e945140c651715c03456631a2c3aa4cdc772 | MATLAB | 698 | 25 |
ind = 1;
data = dir('/DATAPOOL/ERRORMONITORING/SEM_mri_data/P*');
%%
for i = 1:size(data,1)
data_func = dir([data(i).folder, '/', data(i).name, '/mri/SEM_', data(i).name, '/nifti/func/run*']);
for j = 1:size(data_func,1)
spm_folder = [data_func(j).folder, '/', data_func(j).nam... |
1e9819a96d072b734bfa933ea06a9dbb84dc16cca99bab378874d959c589b557 | MATLAB | 699 | 29 | % RSKELF_MV_SN Dispatch for RSKELF_MV with F.SYMM = 'S' and TRANS = 'N'.
function X = rskelf_mv_sn(F,X,mode)
% initialize
n = F.lvp(end);
% upward sweep
if bitget(mode,1)
for i = 1:n
sk = F.factors(i).sk;
rd = F.factors(i).rd;
X(sk,:) = X(sk,:) + F.factors(i).T*X(rd,:);
X(rd,:) =... |
7f89809b6a594049e131efa87379be0420bb2d465c167dbbeb911079cf413d25 | MATLAB | 699 | 24 | % color correction
function success_code = colorcorrection_3D_cuda()
loadParameters;
arg_list = {};
postfix_list = {};
run_num_list = 1:params.NUM_ROUNDS;
for run_num = run_num_list
arg_list{end+1} = {run_num};
postfix_list{end+1} = num2str(run_num);
end
conditions = cond... |
8f9b5e862a3e607d8324f9d9eb453d6fd5e8b939cf1564d1cce0558cffb124da | MATLAB | 699 | 29 | % RSKELF_SV_SN Dispatch for RSKELF_SV with F.SYMM = 'S' and TRANS = 'N'.
function X = rskelf_sv_sn(F,X,mode)
% initialize
n = F.lvp(end);
% upward sweep
if bitget(mode,1)
for i = 1:n
sk = F.factors(i).sk;
rd = F.factors(i).rd;
X(rd,:) = X(rd,:) - F.factors(i).T.'*X(sk,:);
X(rd,:)... |
1379b7780fa73f78369e2d9725b368aba044e75f6bfb9019002940095b45e00d | MATLAB | 700 | 25 | function [fn, extension] = remove_extension(fname)
% REMOVE_EXTENSION Removes a file extension from the string/char array.
%
% [FN,EXTENSION] = REMOVE_EXTENSION(FNAME) Removes a file extension from
% the filename FNAME. It returns the file root FN and the extension
% itself. E.g. FNAME = '/dir1/dir2/file.xxx' give... |
68020ccdc2e349107a2513fba1eb283f5014980e4767a910716ccd09373bfba2 | MATLAB | 700 | 20 | % DETPERM Determinant of permutation vector.
%
% D = DETPERM(P) computes the determinant (i.e., sign) D of the permutation
% P.
%
% In both MATLAB and Octave, this is done by calling DET on the associated
% permutation matrix, which for efficiency should be represented explicitly
% as sparse in the form... |
72f40b52d311b140990bba8f65242f2432668bb15304520ec8379a2682d237d9 | MATLAB | 700 | 29 | function LAN = lan_from_csv(Files, Path)
LAN.data{1} = [];
if nargin == 0
[Files, Path, ~] = uigetfile({'*.csv','CSV file';}, 'Open .csv EEG files',...
'*.csv', 'MultiSelect', 'on');
elseif nargin == 1
Path = '';
end
if iscell(Files)
for c = Files
LAN = importcsv(LAN, c{1}, Path);
end
... |
4ca281c373271b1e6e012d83b7b8930d218fa10b2288978fe82a04e7967fee1e | MATLAB | 701 | 20 | function anat_ns=no_skull(anat_file,mask,anat_nn)
target_file{1,:}=[anat_file ',1'];
target_file{2,:}=[mask, ',1'];
out=fileparts(anat_file);
matlabbatch=[];
matlabbatch{1}.spm.util.imcalc.input = target_file;
matlabbatch{1}.spm.util.imcalc.output = anat_nn;
matlabbatch{1}.spm.util.imcalc.outdir = {out};
matlabbatch... |
a7a2a7be40581e8274feba1486389e1fb7d32151e544ca8bb65c38319043560d | MATLAB | 701 | 25 | function ndx = topAboveThresh(scores, N, thresh)
% Return indices of top N items which are above threshold
% scores(i): confidence
% N - max number to return
% thresh(i): threshold to use for scores(i); thresh can be a scalar
%
% Examples
% topAboveThresh([1 2 3 4], 2, 1) % [4 3]
% topAboveThresh([1 2 3 4], 4, 1) % [4... |
ae2c07843848f55aad1f9bd9500b2f1282fd7b915e74281625e92efc936a754f | MATLAB | 701 | 26 | function new_filename = get_new_filename(filename, noSpaces)
%GET_NEW_FILENAME Returns a new filename based on the one specified.
% Usage:
% new_filename = get_new_filename(filename)
% new_filename = get_new_filename(filename, true) % no spaces
if nargin < 2 || isempty(noSpaces); noSpaces = false; end
% Break fil... |
d45b15167740090ea10363d69baea7c54e5e63473fa029e138446e8974b28d90 | MATLAB | 701 | 25 | % DFF.m
% Sarah West
% 12/2/22
% Function that finds the delta F/F, given a set of fluorescence values and
% a mean. Is run by RunAnalysis
% Inputs:
% parameters.data -- the fluorescence values to convert into percents
% parameters.fluorescence_mean -- the mean fluorescence, should work with
% the dimensions of param... |
d4e862045d48ffa472bc0c98df10267491f521496f15945dbfbfa26f53b855b2 | MATLAB | 701 | 25 | function ROOTPATH = getRootDirPath(currentPath, N)
% If N is set non-zero, return N-backward root path of current path.
% NOTICE: DO NOT SET FieldTrip PATH to THE TOP
% e.g.
% currentPath = fileparts(mfilename("fullpath"))
% >> currentPath = 'D:\Education\Lab\MATLAB Utils\file'
%
% N ... |
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