sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
7c6aee43928ce12f9ffb0f6ec56bdb8c7dc9bdc498abe437c5234f6036f75b21 | MATLAB | 906 | 44 | % this helper function checks every metadata
% .txt file and makes sure that file
% identifiers are monotonically increasing
% non-monotonic fileids may suggest mistakes
% in metadata
function checkMetadata()
spikesfolder = getpref('crabsort','store_spikes_here');
allexps = dir(spikesfolder);
bad_exps = false(len... |
7defb82959d93e986686e92b0142f2e5fe3196bbc5545fb9c3af8ce711b3bc0f | MATLAB | 906 | 33 | function [ data_shifted] = imtranslate3D(data,shifts )
%SHIFT3D Works like imtranslate but for 3 dimensions
%Use the circular shift feature in matlab, which wraps elements around from
%the end to positition 1, etc. Then we have to go back to zero out
data_shifted = circshift(data,shifts);
if shifts(1)<0
%note th... |
865b2ecdd270948a8932a48b22c767df4b0ee64a1a1c8e74ba5f2acc1a8101e0 | MATLAB | 906 | 34 | function sub = ind2subv(siz,index)
% Return a subscript vector from a linear index
% IND2SUBV(SIZ,IND) returns a vector of the equivalent subscript values
% corresponding to a single index into an array of size SIZ.
% If IND is a vector, then the result is a matrix, with subscript vectors
% as rows.
%
% See ind2subvBs... |
87de93bdd2a54cb04c279a775df842f5195fe06c5052c312a76362b87542f3c0 | MATLAB | 906 | 27 | function [L, G] = fooof_curves(Dt)
%% compute periodic and aperiodic part from fooof parameters
L = zeros(Dt.nchannels,Dt.nfrequencies);
G = zeros(Dt.nchannels,Dt.nfrequencies);
for i=1:Dt.nchannels
c = Dt.info.peaks.gaussian_params(Dt.info.peaks.ic==i,1);
a = Dt.info.peaks.gaussian_pa... |
ecbbe0251e4c27167fcdc7c72df36e260e93d78fccb2c3cdfd0d8a6e2556a033 | MATLAB | 906 | 53 | % opens a dataset, and a text file for the metadata
% usage
% crabsort.open('exp_#')
%
function datafolder = open(exp_name, silent)
if nargin == 1
silent = false;
end
try
data_loc = getpref('crabsort','data_loc');
catch
error('data_loc not set! ')
end
spikesfolder = getpref('crabsort','store_spikes_here');
... |
fa939e8c3bd2633d1548fd9aae3cb19018b5ba1436b24cce7080eee10de024ca | MATLAB | 906 | 42 | function S = read_smatrix(filename)
fid = fopen(filename,'r');
h1 = waitbar(0,'loading sparse matrix...');
n = fread(fid,1,'int');
nnz = fread(fid,1,'int');
x = zeros(nnz,1);
y = zeros(nnz,1);
z = zeros(nnz,1);
ct = 1;
for i = 1:n
waitbar(i/n,h1);
nz(i) = fread(fid,1,'int');
vals = fread... |
4e2c5e6f8c645190af690f334f4c84de41d1805fbc10ff20565e3f4f9e61fe60 | MATLAB | 907 | 29 | function [fx,J,dfdp] = f_embed0(Xt,Theta,ut,in)
% evolution function for dynamical system's delay embedding
% function [fx,J,dfdp] = f_embed(Xt,Theta,ut,in)
% First form delayed state vector and input
iX = (1:in.dim.n) + (in.options.delays(:)'.*in.dim.n);
dX = Xt(iX,:);
% Evaluate evolution function at the delayed st... |
5c331a59d04ee9f66c286a66a532f00cf7caeb226c4d6e9a983ca82f59e1fa91 | MATLAB | 907 | 29 | function idx = tt_sub2ind(siz,subs)
%TT_SUB2IND Converts multidimensional subscripts to linear indices.
%
% INDS = TT_SUB2IND(SIZ,SUBS) returns the linear indices
% equivalent to the subscripts in the array SUBS for a tensor of
% size SIZ.
%
% See also TT_IND2SUB, SUB2IND.
%
%MATLAB Tensor Toolbox.
%Copyright... |
64207534a7a55deac4cde2741b75c49374dbd43b0da6067937092533d2a447e1 | MATLAB | 907 | 29 | function [pX] = mixDiscretePredictMissing(model, X)
% Compute pX(i,j,v) = p(Xj=v|case i), where X(i,:) may be partially
% observed (with NaNs)
% This is like mixModelReconstruct expect we compute the posterior
% predictive distribution, intsead of using MAP estimation
% This file is from pmtk3.googlecode.com
[pZ] = ... |
7c232e696dd7bab0c79f93672bdb03406c367374f27387a3e91927e4ddb2e791 | MATLAB | 907 | 40 | function [matlabclass,bytes_per_element] = dtypechar2matlabclass(dtypechar)
switch dtypechar,
case {'c','s','p'},
matlabclass = 'char';
bytes_per_element = 1;
case 'b',
matlabclass = 'int8';
bytes_per_element = 1;
case 'B',
matlabclass = 'uint8';
bytes_per_element = 1;
case 'h',
mat... |
a274ffae627c35527715c9fec96527474fb1d3013d22f6279173e9e053795960 | MATLAB | 907 | 17 | % Count number of responses (individual spots) in input array
% (ImageArray_DeltaGFPnMax_Reg2)
% count only responses that are in the chosen region (AllBoutonsRegion)
function RFNum_AllNMJ = CountResponses2(ImageArray_DeltaGFPnMax_Reg2, AllBoutonsRegion)
LastImageNumber = size(ImageArray_DeltaGFPnMax_Reg2,3);
... |
f4a6491588295dfdadf7fb9624e9eae7eeac1d00eda1c544cfba1189c5045386 | MATLAB | 907 | 30 | function imMasked = maskWithAnnulus(im, outerCircleSize, innerCircleSize, blurRadius, bg)
% imMasked = maskWithAnnulus(im, outerCircleSize, innerCircleSize, blurRadius, bg)
%
% Masks an image im with an annulus whose outer dimension is
% outerCircleSize (in pixels) and inner dimension is innerCircleSize (in
% pixels... |
1caa2e67a6a2b1a87ef0495311fef9268ed2395201af069626fcbcf402b17f59 | MATLAB | 908 | 46 | function S = multinomSample(arg1, arg2, arg3)
%% S(1:nsamples, :) ~ Mu(N, p)
% S = multinomSample(model, nSample); OR S = multinomSample(N, p, nSamples);
% model.p must sum to one
% sum(S(i, :)) = N for all i.
% S is of size, nsamples-by-length(p), and S(i, j) is in {0, ... , N}
%% Example
%
% setSeed(0);
% model.N = 1... |
6991fc99510526dbf3f260d6eddbabc9b625e62f41ec893b0062fad7c32abeef | MATLAB | 908 | 19 | function pp = HumanOdorRep_ranksum(resp_trials, bsl_trial, response_interval, bsl_interval)
% simple ranksum test for responses
%-----------------------------------------------------------------------------------------
% Kehl et al. 2024 (DOI:XX)
% Single-Neuron Representations of Odors in the Human Brain
% Author: Ma... |
6a5e174f5957949c22b8b3d6211c810a18c397b9c65b4f5baaddf549386955fd | MATLAB | 908 | 34 | function img_3d = volume_cleaning_plots(name, img_3d, z_proj_with_dust, take_maximal_volume)
parameters;
img_3d = volume_filtering( img_3d, take_maximal_volume);
%---------------------- Cell colored z-projection -----------------------
z_proj = sum(img_3d, 3);
z_proj = z_proj ./ max(max(z_p... |
ac6bc70952f053f35e8bddda6d023d4c285a0b1e3c8afda8b4a4d06ce31e4237 | MATLAB | 908 | 37 | function dgm = treeToDgm(tree)
% Make a directed version of an undirected tree
% so we can compute logprob efficiently
% We assume all nodes have the same number of states
fprintf('treeToDgm does not work\n');
% this is just because dgmCreate insists that nodes
% be topologically ordered, which is not really necessar... |
946ab61cfe5296eaa494adafc42581a3e426266fafca9ce04a4a7c3f5fe9dbba | MATLAB | 909 | 24 | function [P,w,idxfront,idxside] = Sample3DPoints(xfront,xside,Sfront,Sside,dlt_front,dlt_side,wfront,wside,K)
nfront = size(xfront,2);
nside = size(xside,2);
w = nan(nfront,nside);
pfront = nan(nfront,nside);
pside = nan(nfront,nside);
P = nan(3,nfront,nside);
for ifront = 1:nfront,
for iside = 1:nside,
[P(:,ifr... |
b35ab6697e30f7da0ace4a7a5bef0a61ebb075bb44fc5d674c3e6a3aeab56ed2 | MATLAB | 909 | 37 | function fWriteQdec(fname,Qdec)
% fWriteQdec(fname,Qdec)
%
% Writes cell string array Qdec to a Freesurfer's Qdec table data file.
%
% Input
% fname: The name of a Qdec table data file.
% Qdec: Two dimensional cell string array with the data.
%
% $Revision: 1.1.1.1 $ $Date: 2012/02/02 11:25:52 $
% Original Author: Jo... |
e80678b1a1485bee54f1e512b011047f1e073a752bb56d43782e582dc320bb23 | MATLAB | 909 | 30 | function yhat = svmlightPredict(model, Xtest)
% PMTK interface to svmlight
% which must be on the system path.
%
% model - a struct generated by svmlightFit()
% yhat - output is in {-1, 1}, (unless regression)
% This file is from pmtk3.googlecode.com
% You can use the addtosystempath function to add the directory... |
136387b3abaf371a56acc15eccf15005d422333eba2caa5d6684b6dad7e22630 | MATLAB | 910 | 43 | %% Multiscale vesicles detector by template matching
% Author: Antonio Martinez-Sanchez
% I: input tomogram
% r: radius range [min,max]
% t: iteration step in r
% s: membrane thickness
% aw: wedge semiangle in degress
% rw: angle rotation for the wedge
% V: coeficients scale integration
% R: estimated radii for the coe... |
7219d3538f309453b27f2600478425b2f25b3abc25008169c5176865ec4c8b3b | MATLAB | 910 | 28 | function [ outputImage_interp ] = TPS3DApplyCUDA(in1D,out1D,imgToWarp,outdim,data_channel)
%TPS3DAPPLY applies the warp to a vectorized version of the image data,
%then returns an interpolated version of the data
%now that we have the pixel->pixel mapping from the TPS, apply it to a
%data c... |
76f9053e427fb9212418bfaf4b447f0e6a157bd7add1b95d2d9b0120c40b0ca6 | MATLAB | 910 | 41 | function res = bmmFit(con,lb,ub)
rng default
nIter = 5; %number of initial search conditions
%param vector = [mu1 mu2 sd mix]
if ~exist('lb','var') || isempty(lb)
lb = [0 0 0 0]';
end
if ~exist('ub','var') || isempty(ub)
ub = [1 1 400 1]';
end
ubSet = [1 1 100 1]';
maxfeval = 10000;
options = optimset('T... |
10965f8fc339e301e333dfe9d8c1863d389497ffce751880793d4af8103fbbae | MATLAB | 911 | 33 | %% Minfunc Logreg Demo
%PMTKauthor Mark Schmidt
%PMTKurl http://people.cs.ubc.ca/~schmidtm/Software/minFunc/minFunc.html
%%
% This file is from pmtk3.googlecode.com
options.Display = 'none';
setSeed(1);
nClasses = 5;
nInstances = 1000;
%nInstances = 100;
nVars = 2;
[X,y] = makeData('multinomial',nInstances,nVars,nC... |
29fa20d4b769a2b641f3cacf86acdf1930012d43570118ad3922228968a423f8 | MATLAB | 911 | 33 | %% Simple test of a discrete mixture model
% This file is from pmtk3.googlecode.com
setSeed(0);
nmix = 6;
truth.nmix = nmix;
truth.d = 80;
truth.nstates = 8; % number of observed states
truth.mixweight = normalize(rand(1, truth.nmix));
truth.T = normalize(rand(truth.nmix, truth.nstates, truth.d), 2);
nsamples = 100... |
460b2944044b5a3197878a6e247b8fca10326fb53d5da42d62e6ad48bd193dd9 | MATLAB | 911 | 29 | function [u,dudx,dudp] = u_Fourier(x,P,t,in)
% input function for free-form (Fourier decomposition) deterministic DCM
% function [u,dudx,dudp] = u_Fourier(x,P,t,in)
% IN:
% - x: [useless]
% - P: nW*nuX1 vector of Fourier projection parameters, where nW is the
% number of Fourier basis functions and nu is the dime... |
65101a3702b758abd5a5349fed84e2b73a9683f40f3fae833041f40c5a6e2e63 | MATLAB | 911 | 34 | function [ c ] = getEllipse( gauss, nsigma,detail)
%GETELLIPSE Summary of this function goes here
% Detailed explanation goes here
if nargin<3; detail=5e1;end
c = NaN(2,detail);
if sum(isnan(gauss.sigma))>0; return; end;
for j=1:size(c,2)
alpha = 2*pi*(j-1)/(size(c,2)-1);
c(:,j) = nsigma*sqrtm(gauss.sigma)*... |
aca7264787b3631568945e35cc1e4a5600388ed9fdc70ecf8d726b7f0a9d180e | MATLAB | 911 | 34 | function [yhat, post] = generativeClassifierPredict(logprobFn, model, Xtest)
% Return the predicted class labels
%% Inputs
%
% logprobFn - a function handle: logp = logprobFn(classConditionals{c}, Xtest)
% model - a struct returned by generativeClassifierFit()
% Xtest - Xtest(i, :) is the ith case
%
%% Outp... |
beca1ce3d0f6ffd97b99f813328c70830e3cfd76330a95db073edd8a29febdee | MATLAB | 911 | 32 | % http://en.wikipedia.org/wiki/Multivariate_adaptive_regression_splines
figure; hold on;
xs = 0:0.1:20;
plot(xs, max(0,xs-5), '-', 'linewidth', 3);
plot(xs, max(0,5-xs), 'r:', 'linewidth', 3);
axis_pct
set(gca, 'fontsize', 16)
printPmtkFigure('marsHinge')
figure;
xs = 0:0.1:20;
%f = @(x) 25+6.1*max(0,x-13) -3.1*max(0... |
d67295b33ebfbafcf3841e141e768fb284f82575c6f81a3410cddedf4c9261cd | MATLAB | 911 | 41 | function [precMat, covMat] = ggmLassoR(C, rho, varargin)
% Use R code to find L1-penalized precision matrix
% This file is from pmtk3.googlecode.com
%PMTKauthor Rob Tibshirani
%PMTKurl http://www-stat.stanford.edu/~tibs/glasso/
%PMTKmodified Kevin Murphy
useMBapprox = process_options(varargin, 'useMB', 0);
%C ... |
22e97dd4576799578a1782ebcf584bee57f01df28682976c3cbef2c89f7167ef | MATLAB | 912 | 48 | function [h] = first(fname, Nl)
%FIRST Return the first Nl lines of text in file fname
%
% [h] = first(fname, [Nl])
%
% If Nl is not given, or if it is empty, only the first 10 lines of
% text are returned. If Nl is set to 'all', then all lines are
% returned.
% Emilio Salinas, May 1998, rev Septembery 2013
% how ... |
ddd50e6b6b3125faaef43750c259fb45c1ea52209df30582ba52e2b68966f268 | MATLAB | 912 | 39 | function tlt = save_tracklet(trx,matfile)
% tlt = save_tracklet(trx,matfile)
% matfile: pass [] to just return tracklet data without saving
tfnosave = isequal(matfile,[]);
tlt = struct;
tlt.startframes = cat(1,trx.firstframe);
tlt.endframes = cat(1,trx.endframe);
ntargets = numel(trx);
tlt.pTrk = cell(ntargets,1);
if... |
f0c02a77022ac93221a3f9b1b1a612625ea4ec15835e68233e0daacae392063b | MATLAB | 912 | 37 | function s = structrmfield(s,flds)
% s = structrmfield(s,flds)
% rmfield with removal of nested fields allowed
%
% Elements of flds which are not present in s are silently ignored.
%
% Example:
% flds = {'fld1','fld2.subfld'};
% s = structrmfield(s,flds);
assert(isstruct(s) && isscalar(s));
if ischar(flds)
flds = ce... |
48faa2f718d030519dd20fe78dc3b4d1800832658a79271381670645702c6fdb | MATLAB | 913 | 58 |
%%normalized gaussian kernel
%a=[.0003 .1065 .7866 .1065 .0003];
%n=length(a);
%%make a 4D kernel
%b=a;
%for d=2:4
%b=kron(b,a');
%end
%H=reshape(b,n*ones(1,4));
H = fspecial3('gaussian');
%H = [1 0 -1; 2 0 -2; 1 0 -1];
%a = H(1, :);
n=length(a);
%make a test matrix
%A = randn(2048,2048,141);
A = randn(10,10,... |
94eed313bb74f9363238bdf8244dc5c09f846ad69639d9e3f5e9c81a2b63e6bd | MATLAB | 913 | 28 | function n2 = dist2(x, c)
%DIST2 Calculates squared distance between two sets of points.
%
% Description
% D = DIST2(X, C) takes two matrices of vectors and calculates the
% squared Euclidean distance between them. Both matrices must be of
% the same column dimension. If X has M rows and N columns, and C has
% L rows... |
d753f442537db6308d159b03f84842fc2bed8d21afdc7f64590bc275362b89a4 | MATLAB | 913 | 23 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% step5_load_dipole_data.m %%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
if ~skip_user_prompts
[dipole_name, dipole_path] = uigetfile(fullfile(patient_path,'dip... |
ee9370f2d24e40b58340bfb58aef5873a1a3c3dd250c16cff4d22985b7844b8b | MATLAB | 913 | 31 | function plot_cor_xyz(vals,keys,ranges,coords)
%% plot peak attribute distributions
figure('units','normalized','outerposition',[0 0 1 1]);
s=1;
cnames = [string('x') string('y') string('z')];
for n=1:size(coords,2)
for i=1:size(vals,3)
subplot(size(coords,2),size(vals,3),s);
... |
3a5a44b8b4e3c03714cbbeb28a18d4cddc4f7164354232b560a980a047ccfb35 | MATLAB | 914 | 34 |
% Not the latest version
load(fullfile(saveLoc, 'sig_allSessions'), 'sigSL')
ws{1} = sigSL.w.TinC;
ws{2} = sigSL.w.TinI;
ws{3} = sigSL.w.ramp;
ws{4} = sigSL.w.PC1;
ws{5} = sigSL.w.whatD;
ws{6} = sigSL.w.whenC;
allCs = nan(8,length(allW),length(allW));
for sess = 1 : 8
for w1 = 1 : length(dNames)
... |
61099f57bbf736d7c75b04dda27c5b3f576c119409d6da3554b7662c5f480b52 | MATLAB | 914 | 40 | function [X, y] = mixModelSample(model, nsamples)
%% Sample from a mixture model
% This file is from pmtk3.googlecode.com
y = sampleDiscrete(model.mixWeight, nsamples, 1);
switch lower(model.type)
case 'gauss'
mu = model.cpd.mu;
Sigma = model.cpd.Sigma;
d = size(Sig... |
ad4cc0c4a415e5bfc3190d5f809685541d099208e5e90772b9439cbb1cff109a | MATLAB | 914 | 48 | % check if all files are sorted
%
% usage:
%
% crabsort.checkSorted('857_108',{'PD','LP'})
%
function fatal = checkSorted(allfiles, neurons, early_exit)
if nargin < 3
if length(allfiles) > 50
early_exit = false;
else
early_exit = true;
end
end
fatal = false;
if ischar(allfiles)
allfiles = fullfile(getpref('... |
e507dae3ee509e9d410c86a25df448775796e0e42538e721155355e6f8faa73b | MATLAB | 914 | 18 | function fileList = getAllFiles(dirName)
dirData = dir(dirName); %# Get the data for the current directory
dirIndex = [dirData.isdir]; %# Find the index for directories
fileList = {dirData(~dirIndex).name}'; %'# Get a list of the files
if ~isempty(fileList)
fileList = cellfun(@(x) fullfile(dir... |
29954f344f713092832dff972d39f34a8121d4126dfa5ee7c5fa10357196abba | MATLAB | 915 | 20 | clear;clc;close all
ROOTPATH = strcat(NoveltySU.utils.getRootDirPath(mfilename("fullpath"), 4), "Data\Processed Data\");
cd(NoveltySU.utils.getRootDirPath(mfilename("fullpath"), 2))
protStr = "Active duration";
temp = NoveltySU.utils.dirItem(strcat(ROOTPATH, protStr), "spkData.mat");
popRes = cell2mat(cellfun(@(x)... |
7ecc34de9707bfc0575d5af7182a3a7094ccd2413278108fb14ece33e137dd61 | MATLAB | 915 | 30 | function X = VBA_spm_inv(A,TOL)
% inverse for ill-conditioned matrices
% FORMAT X = spm_inv(A,TOL)
%
% A - matrix
% X - inverse
%
% TOL - tolerance: default = max(eps(norm(A,'inf'))*max(m,n),exp(-32))
%
% This routine simply adds a small diagonal matrix to A and calls inv.m
%________________________________________... |
ecd08691fa245705bbed46bf393fde5dd039a085d009a953d20589e87492952d | MATLAB | 915 | 23 | function h = pbar(pVals, varargin)
% h = pbar(pVals, varargin)
% plot a bar where p values are less than alpha
% Inputs: pVals is a vector of pvalues e.g. from tests at each time point
% name-value pairs of optional inputs for graphical controls:
% xVals = x-axis values to plot to (same size as pVals)... |
11ef7c8d94946adfe8cb79acab6f3b49444d00e78ebc68da3eb5b08f061ed34a | MATLAB | 916 | 38 | %% Sensor Fusion Demo
%
%%
% This file is from pmtk3.googlecode.com
xs = [1.1 1.9]; nx = length(xs);
ys = [2.9 4.1]; ny = length(ys);
xbar = mean(xs);
ybar = mean(ys);
sx = sum((xs - xbar).^2)/nx;
sy = sum((ys - ybar).^2)/ny;
% MLE
lamx = 1/sx;
lamy = 1/sy;
postPrec = (nx*lamx + ny*lamy);
theta = (xbar*nx*lamx + yba... |
a36698452c5526080ce2150727cc560b8ba3b64a4978086a132d29792e31d18d | MATLAB | 916 | 36 | function [drNduT] = get_drNduT(M,nt,dt,par,y)
%% This function returns d(rho(:,end))/d(u) transpose times a vector y
%
% y... vector length(prod(n),1)
% rho(:,0) -----------> rho(:,1) --------------> rho(:,2)
% u(:,1) u(:,2)
% R1, S1 R2, S2
%%
n ... |
fd4a82eef667f5b86071cbdfc1b0f5e324b87f494f1e7b5cf4cc61200e068cbe | MATLAB | 916 | 35 | function F = exgauss_cdf(y,X)
% EXGAUSS_CDF computed cumlative distribution function
%
% DESCRIPTION
% Computes cumulative distribution function for each of the data points in
% y, given the vector of ex-Gaussian parameters X
%
% SYNTAX
% F = EXGAUSS_CDF(y,X);
%
% EXAMPLES
% Mu = 400;
% Sigma = 50;
% Tau =... |
2465fa01abeee681f1bc951da8018480c1f18b2508e1b886fd2f163db4c38d62 | MATLAB | 917 | 47 | function S = getcovariance(mix,inds,centers)
if ~exist('inds','var'),
inds = 1:mix.nin;
end;
if ~exist('centers','var'),
centers = 1:mix.ncentres;
end;
inds = inds(:)';
ninds = length(inds);
centers = centers(:)';
ncenters = length(centers);
S = zeros(ninds,ninds,ncenters);
switch mix.covar_type,
case 'spheric... |
4d06dea87f9ce33fd4e8a161ed2ee7cda9512e8c87574136ca966cde5c45b502 | MATLAB | 917 | 28 | function y = not(x)
%NOT Logical NOT (~) for sptensors.
%
% ~X performs a logical not on the input tensor X. The result always
% returned as a sparse tensor.
%
% See also SPTENSOR.
%
%MATLAB Tensor Toolbox.
%Copyright 2015, Sandia Corporation.
% This is the MATLAB Tensor Toolbox by T. Kolda, B. Bader, and others... |
5f609c3b61950e117c1e1e5febca6bbfc35eb202ca877f6bc955205bcd0139f4 | MATLAB | 917 | 23 | function y_CallSave(FileName,Data,Option)
% function y_CallSave(FileName,Data,Option)
% Call save for parfor usage. ('save' is not suitable for 'parfor')
% Input:
% FileName - The output File name.
% Data - The data want to be saved.
% Option - The option for calling save. Could be:
% ... |
784a2f77e82e0ef666f1aae0be9105ea05e8f3ceffe5f2db8c5475675d08725f | MATLAB | 917 | 29 | function find_and_move_videos(basepath,local_drive_path)
% matlab wrapper for find_and_move_videos.py
%
% find_and_move_videos will copy videos to dlc video path and also copy
% results back to original folder locations
%
% Input:
% basepath: session or project path
% local_drive_path: local path where you... |
80ac73b2e5fbfaf978b9ea1cbb05c8d7933de9f00627682e5654bfc8bc05e394 | MATLAB | 917 | 15 | function [] = NETCDFdisplay(filename)
%NETCDFDISPLAY
% [] = NETCDFdisplay(filename) displays information about specified SOFA file
% SOFA API - function netcdf/NETCDFdisplay
% Copyright (C) 2012 Acoustics Research Institute - Austrian Academy of Sciences
% Licensed under the EUPL, Version 1.1 or – as soon they will... |
960ce50a5e613526ae27492390c48bd6699d6ac7c637ba16079ff3a601919bad | MATLAB | 917 | 28 | function Draw_ROIs_Through_Cortex_3_Views(Anat,roi,Conn,params)
% This function displays hemispheres with ROI spheres and sticks connecting
% them in 3 views.
Px=0;
Py=-110;
Pz=-125;
Txt='+';
Ctxt=[1,0,0];
disp('<<< Drawing ROIs and sticks on transparent brains, please be patient')
figure('Color','w','... |
0a118876b25ea6d9f75839316d4f841324a58b397a0db951107f55ca6f6a1d11 | MATLAB | 918 | 20 | function sector_count_mask = generate_sector_count_mask(circle_centers, num_sectors_per_colony, outres, scaling_factor)
sector_mask = zeros(outres,outres);
num_circles = size(circle_centers, 1);
for this_circle = 1:num_circles
scaled_circle_center = scaling_factor*circle_centers(this_circle,:);
translate... |
8121e94e9d81485febf2c6710b93a02bbbaadb835326faac744f7b71c724fe0f | MATLAB | 918 | 24 | function [triplet] = makeTCATriplet( blue_dim, red_dim )
%UNTITLED2 Summary of this function goes here
% Detailed explanation goes here
triplet = figure('units','normalized', 'Position', [0.8, 0.7, 0.15, 0.22],...
'MenuBar', 'none', 'Color', [1, 1, 1]);
set(triplet,'NumberTitle', 'off')
hold on;
plot([0,1,2], [0... |
e2f7cae975fb9094abd26806b2923354f2dc44132fdd76101911d758fbb3aded | MATLAB | 918 | 20 | function subwts = getGaussianSubWeights(params)
%UNTITLED2 Summary of this function goes here
% Detailed explanation goes here
%==========================================================================
mx = params.gaussparams(1);
my = params.gaussparams(2);
sx = params.gaussparams(3);
sy = params.gausspa... |
0f5b4c40d0c96fdc597f53c4ea93266e8cda9b726ee6c5bee210bab69c8873a6 | MATLAB | 919 | 41 | % Plot stimulus-locked mean traces for all coherences - considering nans in
% each trial
% meanTracesRL_bigSbigT
conditions = rt_quant;
colores = NS_colorsBY(length(nanunique(conditions)));
dt = sigRL.t(2)-sigRL.t(1);
min_num_bins = 50; % read from elsewhere...
[Son,ti_on] = bigSbigT(rl,dt,dt,smooth_win_t,... |
3a36e7b0563438e6773db7b9d71f7f3ad1f63782f2cb1a0d01eb091627aeb3dc | MATLAB | 919 | 33 | function [samples] = hmmSamplePost(model, X, nsamples, varargin)
% Forwards filtering, backwards sampling for HMMs
%
% X must be a single sequence of size d-by-T
% OUTPUT:
% samples(t,s) = value of S(t) in sample s
%%
% This file is from pmtk3.googlecode.com
softev = process_options(varargin, 'softev', []);
initDist... |
5a1c19f0151d622a1a68d86d4fa707ea7d44690b4d10a0a13fb697ebb6cc8330 | MATLAB | 919 | 42 | %% MAIN
clear all; clc; Screen('CloseAll');
% IOPort('CloseAll');
%%
S= struct();
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
S.SUBJECT = 'P01';
S.RUN_ID = '_R1';
dir_path = 'F:\SEM_mri\MRI\SEM_mri_rawdata'; % Alterar!
filename = [S.SUBJECT S.RUN_ID];
... |
b473cbd37a911ad85fad07ddda619513be1d912b543b655f48db0defaae3b85f | MATLAB | 919 | 28 | function SetDefaultValue(position, argName, defaultValue)
% Initialize a missing or empty value in the caller function
%
% SETDEFAULTVALUE(POSITION, ARGNAME, DEFAULTVALUE) checks to see if the
% argument named ARGNAME in position POSITION of the caller function is
% missing or empty, and if so, assigns it the value DE... |
d89909d3f9082a4669f2a6c8a35d2eef9589fa8ba69990044bfccc201774dfdc | MATLAB | 919 | 36 |
spacing = 30;
mytform = deformationField;
sizeTform = size(mytform);
%decimate deformation field
Tformdec = zeros(sizeTform(1)/spacing,sizeTform(2)/spacing);
for i = 1:sizeTform(1)/spacing
for j = 1:sizeTform(2)/spacing
Tformdec(i,j,1) = mytform(i*spacing,j*spacing,1);
Tformdec(i,j,2) = mytform(i*... |
3b5a4461b3b7cdedb0f6288db0ff40dfb32247f89241bdc49df66f6cca6b2c33 | MATLAB | 920 | 25 | function A = VBA_spm_mesh_adjacency(F)
% Compute the adjacency matrix of a triangle mesh
% FORMAT A = spm_mesh_adjacency(F)
% F - a [fx3] faces array or a patch structure
%
% A - adjacency matrix as a sparse [vxv] array
%__________________________________________________________________________
% Copyrig... |
3ca8b02b832cb288cc2fc17c113b151c493937f50f881d7ca59a9a104601ce04 | MATLAB | 920 | 47 | function S = mixgetcovariance(mix,inds,centers)
if ~exist('inds','var'),
inds = 1:mix.nin;
end;
if ~exist('centers','var'),
centers = 1:mix.ncentres;
end;
inds = inds(:)';
ninds = length(inds);
centers = centers(:)';
ncenters = length(centers);
S = zeros(ninds,ninds,ncenters);
switch mix.covar_type,
case 'sphe... |
4a5e60a2bb1f612b21b1536144e38af6ca22a8df9bcfef5d5b7c25c221767235 | MATLAB | 920 | 31 | function browse_topoplotVAR(cfg, data)
% BROWSE_TOPOPLOTVAR is a simple helper function for FT_DATABROWSER that
% computes the variance of band-pass filtered data and makes a topographic
% plot. It serves to make a quick-and-dirty power topography.
%
% See also BROWSE_MOVIEPLOTER, BROWSE_TOPOPLOTER, BROWSE_MULTIPLOTER... |
018f39a88bed03eab6023b4168240eb47995a2062bbaa9aa4e2d41c101378d7a | MATLAB | 921 | 44 | function [slope_results] = compute_slope(logreg_results)
%%% weight of location evidence in the location context
d(:,1)=logreg_results.thetadd;
%%% weight of location evidence in the frequency context
d(:,2)=logreg_results.thetadf;
%%% weight of frequency evidence in the frequency context
f(:,1)=logreg_results.theta... |
0e230a346c03b82253266d1c3990b24cd72c6ce9270fb404a2ac14e75f7d3ec6 | MATLAB | 921 | 22 | function [camPos camDir planeCoefs Z camUp camR] = DLTCameraGeometry(coefs)
% function [camPos camDir planeCoefs Z] = DLTCameraGeometry(coefs)
% Inputs: coefs - the 11 DLT coefficients for the camera in question
% Outputs:
% camPos - positions of the cameras (as computed by DLTcameraPosition)
% camDir - look... |
11910f1969c0c190398d09c8f3a18fe5810557b54769bcc157f12fac4d92649a | MATLAB | 921 | 32 | function r = matCell2Mat(A)
if iscell(A)
try
n = numel(A);
[mA,nA] = size(A{1});
r = zeros(n,mA*nA);
for i = 1:n
r(i,:) = reshape(A{i},1,mA*nA);
end
catch e
if strcmpi(e.identifier,'MATLAB:getReshapeDims:notSameN... |
54d03bb34f88572c018cbfaeb56470e6baf60ee86580ba811520b94f27a80a95 | MATLAB | 921 | 39 | function res = parforOverVideo(readframe,frms,fun,varargin)
[args,bufsize,verbose] = myparse(varargin,'args',{},...
'bufsize',128,'verbose',false);
ncurrmov = numel(frms);
useparfor = true;
if useparfor,
imbuf = cell(bufsize,1);
niters = ceil(ncurrmov/bufsize);
res = cell(1,ncurrmov);
for iter = 1:niters... |
de8d6cf13e82d51bf527cc5ee9dfe4f423260765e9a6eb1cdf1254574ed3754e | MATLAB | 921 | 48 | %% Demonstrate inference in pairwise mrf using 4 node network
% Based on http://www.cs.ubc.ca/~schmidtm/Software/UGM/small.html
% This file is from pmtk3.googlecode.com
%% Setup model
nNodes = 4;
adj = zeros(nNodes);
adj(1,2) = 1;
adj(2,1) = 1;
adj(2,3) = 1;
adj(3,2) = 1;
adj(3,4) = 1;
adj(4,3) = 1;
nStates = 2*one... |
0f97dc95360c400e7167c22e214042dd67b21bf27f6ab7418bfbc5c9aed4b7cb | MATLAB | 922 | 32 | function outpoints = mni2tal(inpoints)
% Converts coordinates from MNI brain to best guess
% for equivalent Talairach coordinates
% FORMAT outpoints = mni2tal(inpoints)
% Where inpoints is N by 3 or 3 by N matrix of coordinates
% (N being the number of points)
% outpoints is the coordinate matrix with Talairach points... |
33169758fc4d507e1d1aa176259efe16592cada1867d5d8c028d0240864ab3f8 | MATLAB | 922 | 33 | function [pathname] = uigetdir2(start_path, dialog_title, name)
% Pick a directory with the Java widgets instead of uigetdir
import javax.swing.JFileChooser;
import java.io.File;
if nargin == 0 || isempty(start_path) || ~ischar(start_path), % Allow a null argument.
start_path = pwd;
end
jchooser = java... |
4948fb1a4de5ca3129aad5fb947edd0d309770ce222413e7f73b763ee76c88b4 | MATLAB | 922 | 46 | function tracks = readmtrax(filename)
load(filename);
% because matlab is retarded
load(filename,'angle');
D = 8;
% total number of frames
nframes = length(ntargets);
% data. tracks{t} are the positions of the targets in frame t
% tracks{t} is D x ntargets(t)
tracks = cell(1,nframes);
j0 = 1;
for i = 1:nframes,
... |
63a4596a29647af88140cbcfcfbc2db301e65b53aa61824847e0d30310e9a927 | MATLAB | 922 | 34 | function MakeMATLABClusterScript(shfile,jobid,script,argstr,varargin)
[MCR,TMP_ROOT_DIR] = myparse(varargin,'MCR','','TMP_ROOT_DIR','');
if isempty(TMP_ROOT_DIR),
[~,me] = unix('whoami');
me = strtrim(me);
TMP_ROOT_DIR = fullfile('/scratch',me);
end
MCR_CACHE_ROOT = fullfile(TMP_ROOT_DIR,'mcr_cache_root');
if... |
87b5b3cc6f0ba738af41abf30ed7c4957c134c3a8243c8aa082e60b08060cbc8 | MATLAB | 922 | 23 | function [parceldata parcelstd] = Bo_surfData2parcelData(surfdata, surfparcel)
% function [parceldata parcelstd] = Bo_surfData2parcelData(surfdata, surfparcel)
% computes means in each of the parcels and writes out a new matrix
%
% input: surfdata = k * v surface data (k subjects, v vertices)
% surfpar... |
a6d17a8ec6b5e4b23beac381bc14eb419eefac260f85fe0c9b9fda99248feeb8 | MATLAB | 922 | 41 | function I = load_image(kk , calib_name , format_image , type_numbering , image_numbers , N_slots),
if ~type_numbering,
number_ext = num2str(image_numbers(kk));
else
number_ext = sprintf(['%.' num2str(N_slots) 'd'],image_numbers(kk));
end;
ima_name = [calib_name number_ext '.' format_image];
if ~exist... |
c35e98ab1cfa113659614ba6e378e0ddbd0465f52099b6105f4cbd8fd7526057 | MATLAB | 922 | 28 | function [V2,V3] = VFactor_Local(Data,Wnd,Overlap,position)
if nargin==3
position = [1 length(Data)];
end
if nargin==2
Overlap = round(numel(Data)./2);
position = [1 length(Data)];
end
if nargin==1
Overlap = round(numel(Data)./2);
Wnd = numel(Data);
... |
fd0f9fcd5d5be245f6acc422ccbac3a04be096ed815fabb5cb19cee0663afed4 | MATLAB | 922 | 38 | function [Nburst,burstStart,period,burst] = calc_bursting_par(z)
global trsh
istart = 0;
iend = 0;
NZ = length(z);
burstStart(1) = 0;
burstEnd(1) = 0;
for i = 1:NZ
if i+1 <= NZ
if z(i) < trsh && z(i+1) >= trsh
istart = istart+1;
burstStart(istart) = i;
end
en... |
282c4e2276d8975f837d4bb9986c67018f45f35c6b008b4b1b49ba70aa68459e | MATLAB | 923 | 13 | function [P1,P2,P3,P4,T1]=PlotBox2(BoundingBox,LineStyle,LineColor,LineWidth,Text,TextFontSize,TextFontColor)
P1=plot([BoundingBox(1),BoundingBox(1)+BoundingBox(3)],[BoundingBox(2),BoundingBox(2)],LineStyle,'color',LineColor,'LineWidth',LineWidth);
P2=plot([BoundingBox(1),BoundingBox(1)+BoundingBox(3)],[BoundingBox(... |
552f265e890d504290e96e022b0861fc1a7fd24bcb5b87c9d8a14a064b9bc243 | MATLAB | 923 | 32 | %% Illustration of a GMM singularity
%
%%
% This file is from pmtk3.googlecode.com
f1 = @(x) gaussProb(x,0.5,0.12.^2);
f2 = @(x) gaussProb(x,0.88,0.03.^2)/2;
f3 = @(x) f1(x) + f2(x);
domain = 0:0.001:1;
dataPoints = [0.21 0.25 0.32 0.45 0.58 0.72 0.88];
figure; hold on;
stem(dataPoints',f3(dataPoints)','Color','g','L... |
5b8067f32e7d58d122a1048cf7e518ada96f63240c29361090f32b7b9f861908 | MATLAB | 923 | 37 | function mutexlock(lockfile, timeout)
% MUTEXLOCK creates a lockfile, or if it already exists, waits until
% another process removes the lockfile and then creates it. This function
% can be used for "mutual exclusion", i.e. executing multiple processes in
% parallel where part of the processing is not allowed to run
%... |
69c8554d9ffd19568b294389faa87063162816d3ec0b9cb511c4f5d2b89a9f4b | MATLAB | 923 | 26 | function indlev = defIndlev(level,NtotPar)
% indexing of k-ToM's hidden states
% function findlev = defIndlev(level,NtotPar)
% IN:
% - level: k-ToM's sophistication level
% - NtotPar: total nb of evol/obs params
% OUT:
% - indlev: structure of hidden-states indices
if level==0 % 0-ToM
indlev = [];
else % k-T... |
e27be969fd17371037e41a5d21f8203e2ea0d3c91176df2ce1d531c05ad64f32 | MATLAB | 923 | 27 | % Filter object can be used for filtfilt
% function Hd= get_filter_designfilt(filtType, freqWindow, fs, filtOrder, plotYes)
function Hd= get_filter_designfilt(filtType, freqWindow, fs, filtOrder, plotYes)
if ~exist('filtOrder', 'var')
filtOrder= 2;
end
if ~exist('plotYes', 'var')
plotYes =0;
end
switch lower(... |
f9dd13ed1b4253511b45adc51e7f7daeacd54f0b15fa4d164b2b3665a84442bc | MATLAB | 923 | 25 | function Potential = bemf4_surface_field_potential_accurate(c, Center, Area, PC)
% This function computes CONTINUOUS electric field and the full potential
% on a surface facet due to charges on ALL OTHER facets including
% accurate neighbor integrals. Self-terms causing discontinuity may not
% be included for e... |
9ad427cc672feefc0703e2c10ab160cf7a7b0e9070d68eae73dc1592e812f966 | MATLAB | 924 | 26 | % MessageToUser.m
% Sarah West
% 4/26/22
% Is called within functions that are themselves called by RunAnalysis.m
% Displays a message to user in the command window reporting the progress
% of the function by saying what iterators it's on.
% Inputs:
% parameters.values -- created by RunAnalysis.m
% message -- a stri... |
409219d4f99df731c3655d1a1de32d56fd3e672b0b92013aecdc0b2da3e96b0c | MATLAB | 925 | 38 |
%%%%%This package written by robert wilson, freely available at
% https://github.com/d-r-b-o-b/UsefulMatlabFunctions%%
fontname = 'Helvetica';
fontsize = 16;
ABCfontsize = 24;
fontweight = 'normal';
linewidth = 3;
matlabGrey = [1 1 1]*215/255;
global arminn arminn_pink
arminn = [119, 171, 189]/256;
arminn_pink =... |
dbc378614d1bf53e397a1790719e7ae2c6dc7e77176640a39fb910dbc1dbcca4 | MATLAB | 925 | 17 | function RotatedFullProfile=ImageRotationFullProfiles(TestImage,FullProfileAngles,RotateMethod,PixelLine_Full_XCoords,PixelLine_Full_YCoords)
TestImage=single(TestImage);
for angle=1:length(FullProfileAngles)
TempAllProfiles(angle).TempProfile=zeros(size(PixelLine_Full_XCoords));
end
parfor... |
155dcba8211f96cc20ede8f7daca1bfde451f87e7ab9771bdf24c7d7b18fb558 | MATLAB | 926 | 27 | function this_color = color_picker(object_type)
% COLOR_PICKER assigns all colors to be plotted in a synthetic image.
% Each object should have a representative color, a distribution, or
% alternative data to support color selection.
if strcmp(object_type, "table_background")
this_color = [54 54 68]/255;
els... |
19c55c0a0f968ac84407d55ad57d0632d3e97b58d2f71c193131704b35c746da | MATLAB | 926 | 44 | % Author: Birgit Nierula (Feb, 2020)
% nierula@cbs.mpg.de
function zim_newpage(page_path, page_name, my_title)
% make sure the path ends with /
if ~strcmp(page_path(end), '/')
page_path = [page_path '/'];
end
% create text file
if ~exist([page_path page_name])
mkdir([page_path page_name])
end
fid = fopen([p... |
40df594b6e7d71ff442c55966be744c1d2d2283d7b5fc64adec7d90edc447769 | MATLAB | 926 | 38 | function blocks = mrf2ImgMkTwoBlocks(nRows, nCols)
%% Make Blocks - comb structure (2 interlocking trees)
% This file is from pmtk3.googlecode.com
nNodes = nRows*nCols;
nodeNums = reshape(1:nNodes,nRows,nCols);
blocks1 = zeros(nNodes/2,1);
blocks2 = zeros(nNodes/2,1);
b1Ind = 0;
b2Ind = 0;
for j = 1:nCols
if mod(... |
440e62acd511b2b00837942be75f2aad07e04d45cb4cd6702f3f9215f3638039 | MATLAB | 926 | 35 | function ptrx = toPTrx(s)
tgtsUn = unique(s.tgt);
ntgts = numel(tgtsUn);
ptrx = TrxUtil.newptrx(ntgts,s.npts);
% default x/y fcns (centroid)
xfcn = @(p)nanmean(p(1:s.npts,:),1); %#ok<NANMEAN>
yfcn = @(p)nanmean(p(s.npts+1:2*s.npts,:),1); %#ok<NANMEAN>
for jtgt=1:ntgts
iTgt = tgtsUn(jtgt);
... |
a20cf30212a6188e1efdaaca4bf7386190bc05c672ced572f5b3e13e4b9a335a | MATLAB | 926 | 28 | function Lengths = distBoundary (RatPosition, WallStart, WallVector)
WallVectorX = repmat(WallVector(1,1),1,100);
WallVectorY = repmat(WallVector(2,1),1,100);
RatPositionX = RatPosition(1);
RatPositionY = RatPosition(2);
WallStartX = WallStart(1);
WallStartY = WallStart(2);
Bearings = 0 : 0.02*pi : 1.98*pi... |
a5f56e4e332dc25929777d84139be603887e0a8cc8081ba01ce6e906eea3cdf6 | MATLAB | 926 | 30 | %%This code is used to remove the bad anat_T1 that is not in the
%%good_t1_list.txt
data_info='/gpfs51/dors2/gpc/JamesBooth/JBooth-Lab/BDL/jinwang/PlausGram_9-10/scripts/better_t1.xlsx';
%This is your excel path. In this excel, it should have two columns, one is
%subjects, the other is better_t1.
data_path='/gpfs51/... |
d33ae2a19ab9e2532c19acd6f3608c8ccd89b2670b080f62c4eb545906c5eb4e | MATLAB | 926 | 20 | % VIDEOS
% See also
%
% Behavior annotation for seq files:
% behaviorAnnotator - Caltech Behavior Annotator.
% behaviorData - Retrieve and manipulate behavior annotation of a video.
%
% Seq files [custom codec free video format]:
% seqIo - Utilities for reading and writing seq files.
% seqReade... |
364436a1394fc73b3140eb546931aa86e7d5e5fde8c79e8bd3d74f068fae36f4 | MATLAB | 927 | 34 | function pthresh = lme_mass_FDR(p,fdr)
% pthresh = lme_mass_FDR(p,fdr)
% This function has slightly modified the freesurfer's fast_fdrthresh
% function (jbernal modification 2010)
%
% p = list of p values between -1 and 1
% fdr = false discovery rate, between 0 and 1
%
% Based on Tom's FDR.m from
% http://www.sph.um... |
531f9130cdd6df16b0e808a25f40237631edda259e34d202aa6a1a9ca54849e3 | MATLAB | 927 | 39 | % rd_plotSeqAllTrials.m
switch p.jitter
case 'ITI'
blockLengths = stimulus.itiSeq + p.blockDur;
case 'blockPrecueInterval'
blockLengths = stimulus.jitSeq + p.blockDur;
end
blockStarts = [0 cumsum(blockLengths(1:end-1))];
blockIdx = round(blockStarts*p.refrate + 1);
nBlocks = numel(blockIdx);
p... |
53d539020eaac6c07a78456fafa4e53a859748e1ec483380861cf47e1d06e02b | MATLAB | 927 | 31 | function h_updateSpineAnalysisFileInfo3(handles)
[currentInd, handles, currentStruct, currentStructName] = h_getCurrendInd3(handles);
if ~isempty(h_img2)
handles1 = h_img2.gh.currentHandles;
currentFilename1 = get(handles1.currentFileName,'String');
[pname1, fname1, fExt1] = fileparts(currentFilena... |
6d84b5864d5a4a5a95418300e21c8b24eeaab0dcceac763314560b604bfad8ee | MATLAB | 927 | 30 | function distances_X = compute_distance_matrix(X, dist_type)
distances_X = sdist(X, dist_type);
% Small cleanup for correlation
del = 10*eps(class(distances_X));
if any(diag(distances_X) > del)
% Sometimes the diagonal is not fully 0 because of rounding issues.
% This makes sure it all... |
7013f161ca6af15db52e2ffc365ab5dd5557c459d104eaffa557e0e3fe4cde67 | MATLAB | 927 | 34 |
load('linear-std-1-info', 'allinfo');
lin_info = allinfo;
load('circ-std-1-info', 'allinfo');
circ_info = allinfo;
load('DR-std-1-info', 'theinfo');
dr_info = theinfo;
edges = 0:0.05:1.5;
tick_length = 0.03;
xc = edges(1:end-1) + 0.01;
subplot(1, 3, 1);
dry = histc(dr_info, edges);
dry = dry(1:end-1);
bar(xc, dry,... |
7b855134e2a6dc569f39c755555a0e060094307addda9b96bd3989849a58b808 | MATLAB | 927 | 30 | % readframe = mmf_get_readframe_fcn(header)
%
% Returns the handle to a function which inputs the frame number and
% outputs the corresponding frame for a MMF file described by the input
% 'header'.
%
% Note that this 'header' is modified by mmf_read_frame and that header
% seems to be stored in the function ha... |
b9d1eaa8dded18f102bba2fd7ea93ebafb7523704f23e019babdebf7659abb2a | MATLAB | 927 | 39 | function writeOFF(fn,t,p)
% Writes surface mesh defined in 't' and 'p' to a filed called fn
% Note: At the momemnt it assumes mesh is a triangulated surface mesh only
% http://shape.cs.princeton.edu/benchmark/documentation/off_format.html
%
% Written by:
% Hamid Ghadyani Oct 2010
fid = OpenFile(fn,'wt');
if ... |
ffd85521e693bd46de6ccdc728112cfe09734b6b3f0c8096b18d17a65a43cbaa | MATLAB | 927 | 23 | function [pot] = lpcomp_helm_comb_dir(S,zpars,sigma,targs,eps)
[ndtarg,ntarg] = size(targs);
npts = S.npts;
npatches = S.npatches;
ipatch_id = zeros(ntarg,1);
uvs_targ = zeros(2,ntarg);
norders = S.norders;
ixyzs = S.ixyzs;
iptype = S.iptype;
srcvals = S.srcvals;
srccoefs = S.src... |
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