sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
b8bd9f28a69cea724caa526bd0985f7768b206dfd8132ae6a962e9fe97633de6 | Text | 24,900 | 454 | <p align="center"><img src="https://github.com/PombertLab/SSRG/blob/master/Images/logo.png" alt="SSRG - A simple pipeline to assess genetic diversity" width="900"></p>
[](https://zenodo.org/doi/10.5281/zenodo.5532793)
The [SSRG pipeline](https://github.com/PombertLab/SSRG)... |
03bbaedc57cef0f4035bf886b0a524ed32da0f9e174fd74903238c9cf7d68a96 | Text | 24,911 | 503 | # DepMap Public 23Q2
##############
## Overview ##
##############
This DepMap release contains data from CRISPR knockout screens from project Achilles, as well as genomic characterization data from the CCLE project.
###############
## Pipelines ##
###############
### Achilles
This Achilles dataset contains the res... |
99613db18827bb094431491c3aab538dfadbf0e7d6a878a2a04b2e98547a70f5 | Text | 25,922 | 314 | # Cog: Containers for machine learning
Cog is an open-source tool that lets you package machine learning models in a standard, production-ready container.
You can deploy your packaged model to your own infrastructure, or to [Replicate](https://replicate.com/).
## Highlights
- 📦 **Docker containers without the pain... |
2a16eb1b0ba229e96ecb18c73491dd7297d6f9c31c877d0a5ea28556fd42ba67 | Text | 26,208 | 714 | # NeuroimaGene R project
Hi, Welcome to the NeuroimaGene project!
The goal of this project is to improve the interpretability of genetic studies relating to neurological and/or psychiatric traits. Analyses such as genome-wide association studies often highlight genetic variants that segregate with disease. Methods ... |
f176f851d3c68564f216be676e10cacdc7fe088c0395332a5b55de4b5c9f1b5a | Text | 27,550 | 504 | # LiquidAion Neural Observatory
[](https://github.com/Patternity/LiquidAion-Neural-Observatory/actions/workflows/ci.yml)
[](LICENSE)
[![Data: CC BY-NC 4.0]... |
ba4e11924b1a79dee3822fe079293572f393ed1f5e42b84639ef38f2a6005c1a | Text | 27,874 | 507 | # LiquidAion Neural Observatory
[](https://github.com/Patternity/LiquidAion-Neural-Observatory/actions/workflows/ci.yml)
[](LICENSE)
[![Data: CC BY-NC 4.0]... |
23faab9543f6258106b7892c2a1cbb07b7b57f3b094b5e3e3564442bfc5b4202 | Text | 30,038 | 536 | # FID-Net
Deep Neural Networks for Analysing NMR time domain data. See:
* [G Karunanithy and D F Hansen (2021, JBNMR)](https://doi.org/10.1007/s10858-021-00366-w)
* [G Karunanithy, H W Mackenzie and D F Hansen (2021, JACS)](https://doi.org/10.1021/jacs.1c04010)
* [G Karunanithy, V K Shukla and D F Hansen (2024, Nature... |
6e4d71c643c5f571c62e01887eb321658bee2f52f17c5f10110376a7c9df652e | Text | 30,323 | 622 | # ColabMDA
**ColabMDA** is a specialized tool that lets you run high-quality Molecular Dynamics simulations on Google Colab without the fear of losing your work. The biggest problem with Colab is that it disconnects, often destroying hours of simulation data. **ColabMDA fixes this** with a "resume-safe" system that au... |
e5e57a74c7018e8c7bec758ac7c2f1dd6cd97a7ede2155d99781236d20bce7f6 | Text | 32,222 | 418 | # Motion Correction and Volumetric Image Reconstruction of 2D Ultra-fast MRI
NiftyMIC is a Python-based open-source toolkit for research developed within the [GIFT-Surg][giftsurg] project to reconstruct an isotropic, high-resolution volume from multiple, possibly motion-corrupted, stacks of low-resolution 2D slices. T... |
71643e223035ebf088c72080d7742851ffb1c602fbfd895e9819acd9a6f5be57 | Text | 32,430 | 483 | # SurvivalEVAL
[![SurvivalEVAL logo][logo-image]][repository]
-----------------
[![PyPI][pypi-badge]][pypi]
[![Python Version][python-badge]][pypi]
[![License][license-badge]][license]
[![Maintenance][maintenance-badge]][issues]
SurvivalEVAL is a Python 3.10+ package for evaluating survival analysis predictions.
It... |
bdfe47fee5432f7ab603801c5d39ee5c8fc1937037aa4cd33705d25b04cb68ec | Text | 33,416 | 337 | # rtPupilPhase
This is a repository for code associated with [Kronemer et al., Behavior Research Methods, 2024](https://link.springer.com/article/10.3758/s13428-024-02545-7). This repo includes three components:
1. PsychoPy code implementing a fixation task with real-time pupillometry. This task consists of a black f... |
486255f012dd157b4bc071ba65fbe6c01268e5db2826e3e6fa7a2795c2137dbd | Text | 37,713 | 844 | # H2O
For any question not answered in this file or in [H2O-3 Documentation](https://docs.h2o.ai/h2o/latest-stable/h2o-docs), please use:
[](https://github.com/h2oai/h2o-3/discussions/categori... |
dec4c3c1fcff1b351906c7593a942a615ec7f1a4917f2e61978d754e2ed39d35 | Text | 43,696 | 1,046 | # Wikibase Integrator #
[](https://pypi.python.org/pypi/wikibaseintegrator)
[](https://github.com/LeMyst/WikibaseIntegrator/actions/workflows/python-... |
9395719e4a9c07453b55ba163569870b4ab0759f88826bfdae8d2658f9dfee7b | Text | 45,983 | 656 | # Readme and User Manual for MCmatlab
## What is MCmatlab?
MCmatlab is a Monte Carlo simulation for modeling light propagation in a 3D voxel space. Fluorescence can optionally be simulated after simulation of the excitation light. Included is also a finite element simulation for temperature increase and heat diffusion... |
80b47dee01ea1c5b1d961b63c04277ae0101edd66df8c1dcbf50fc772305ecfb | Text | 50,284 | 913 | # XuLab Registration Tools
**RegTools** is a set of point-and-click programs for analysing brain images.
Say you've imaged a mouse brain and stained some cells. RegTools helps you:
1. **Stitch** the many small image tiles from the microscope into whole brain sections.
2. **Find the cells** in those images aut... |
f517d6cd007e6072116d08396f7376116ece2c2134ce09dfd681b69bbc699aa0 | Text | 50,343 | 1,058 | - [Behavior Flow](#behavior-flow)
- [Tutorial](#tutorial)
* [building the data object](#building-the-data-object)
+ [Loading the data](#loading-the-data)
- [Loading from multiple CSV files](#loading-from-multiple-csv-files)
- [Loading from TrackingData (DLC Analyzer)](#loading-from-trackingdata--dlc-a... |
77fdab01e3fb84402fd0dfe4c57fc0679291766bed4246ce116438f6d4a7b782 | Text | 56,250 | 855 | <div align="center">
<p align="center">
<!-- prettier-ignore -->
<img src="https://user-images.githubusercontent.com/25985824/106288517-2422e000-6216-11eb-871d-26ad2e7b1e59.png" height="55px">
<img src="https://user-images.githubusercontent.com/25985824/106288518-24bb7680-6216-11eb-8f10-60052c519586.png" height... |
34dfd10ce1acd365ab03b92471504ba07f6edf26b6ceb65e0c7cacb365f8f99f | Text | 85,568 | 713 | # Feb 2024 Update
The era of fbcp-ili9341 has come to an end. Fbcp-ili9341 was built on top of the Raspberry Pi's [VideoCore DispmanX API](https://elinux.org/Raspberry_Pi_VideoCore_APIs#vc_dispmanx_.2A).
However, this API has been deprecated by the Raspberry Pi Foundation for a while now, and finally obsolete (=u... |
71e3e4618b23cd5ca83f6e690d88235d7f46a6e4706fa9c3dd1d9eddb2e22632 | TypeScript | 42 | 2 | const {spawn} = require('child_process')
|
bc6639f3788a6de35e40777079ec6bae0ea9de98bbfffd00ae2e7114a937d389 | TypeScript | 95 | 3 | export * from './build-args.js';
export * from './kiwi-builder.js';
export * from './kiwi.js';
|
3d3d65df9033947a284b285fda189670d56ddfd063d352a5977f851c7aa69a6a | TypeScript | 113 | 4 | export interface SkeletonProps {
className?: string;
isAnimated: false | 'pulse' | 'wave' | undefined;
}
|
2b6ce27a63e59e2f0409e2c1df844c976131534e683bb5b3a075cb480a7dfaec | TypeScript | 173 | 5 | export type AsyncMethods<T> = {
[K in keyof T]: T[K] extends (...args: any) => any
? (...args: Parameters<T[K]>) => Promise<ReturnType<T[K]>>
: T[K];
};
|
57d11cc7b4b4474c7e94187b57abac150d5dd601d5f86d6289f809166c1ffaf8 | TypeScript | 185 | 6 | declare module '*.svg' {
import React = require('react');
export const ReactComponent: React.FC<React.SVGProps<SVGSVGElement>>;
const src: string;
export default src;
}
|
82298d79e972b18fc6110dd57a3e0847088146baa5aa2bbd626cbdbe8395017b | TypeScript | 233 | 12 | /*declare const process : {
env: {
AWS_REGION: string
}
} */
console.log(AWS_REGION)
declare const AWS_REGION: string;
export {AWS_REGION}
|
22583759d0045fdf8d62c9db0aacba9fd8bddde79c671aa08c97dcfd4e930cc6 | TypeScript | 241 | 5 | // jest-dom adds custom jest matchers for asserting on DOM nodes.
// allows you to do things like:
// expect(element).toHaveTextContent(/react/i)
// learn more: https://github.com/testing-library/jest-dom
import '@testing-library/jest-dom';
|
18cfc7ef9a76f7e46d447034d265140377327616e5783c1d912f9c69564b209f | TypeScript | 244 | 5 | export const MANUSCRIPT_LINK = 'https://dx.doi.org/10.1073/pnas.2320134121';
export const GITHUB_LINK = 'https://github.com/TRI-AMDD/oxidation-state-api-public';
export const PREPRINT_LINK = 'https://doi.org/10.26434/chemrxiv-2023-9dvlm-v3';
|
219d8b0c1870d43ba4e59fa712d262acb61e93101a8234ef75224d026c8ccba1 | TypeScript | 269 | 7 | import { defineCollection } from 'astro:content';
import { docsLoader } from '@astrojs/starlight/loaders';
import { docsSchema } from '@astrojs/starlight/schema';
export const collections = {
docs: defineCollection({ loader: docsLoader(), schema: docsSchema() }),
};
|
bb0c9a2190b277b2f86679e4c39c58404e2134e2284119dda8c0e456ab08772d | TypeScript | 272 | 10 | export class Store extends EventTarget {
emit(): void {
this.dispatchEvent(new Event("change"));
}
subscribe(listener: () => void): () => void {
this.addEventListener("change", listener);
return () => this.removeEventListener("change", listener);
}
}
|
65e1efa81a39c42f843e339b4a8308f7c78dcff625c20eeeb2a2cf2df5e4ee51 | TypeScript | 295 | 14 | export const requiredModelFiles = [
'combiningRule.txt',
'default.dict',
'extract.mdl',
'multi.dict',
'sj.knlm',
'sj.morph',
'skipbigram.mdl',
'typo.dict',
];
export const modelFiles = Object.fromEntries(
requiredModelFiles.map((f) => [f, '/model/' + f])
);
|
b9cb6df1fbdddaac9c8ea6d60685a53dd496583f110d279ccd2398ed3caca971 | TypeScript | 314 | 5 | /** Site base path, normalised to a trailing slash (respects `base` in astro.config). */
export const base = import.meta.env.BASE_URL.replace(/\/?$/, '/');
/** True for the home route. Starlight gives the index page an empty `id`. */
export const isHomePage = (route: { id: string }): boolean => route.id === '';
|
5945ae4f98929f67714f6b155d1254aca1eed7d729bdc0fc9617cf96e24d5815 | TypeScript | 322 | 18 | export interface OxidationState {
oxidationState: number;
potential: number[];
likelihood: number[];
textPos: number[];
toShowLabel: boolean;
}
export interface PlotData {
specie: string;
textPos: number[];
oxidationStates: OxidationState[];
}
export enum GraphType {
Wavy,
Bar
... |
8df3360cddc2ad0f17a0276a922c338321818f91b8294779a0838d901a9c2e57 | TypeScript | 338 | 12 | /// <reference types="vite/client" />
declare const AWS_CONFIG: {
Auth: {
region: string;
userPoolId: string;
userPoolWebClientId: string;
mandatorySignIn: boolean;
};
};
declare const API_BASE_URL: string;
declare const AMPLIFY_ENABLED: boolean;
declare const dataLayer: Record<s... |
9e7daa2bc1479afb98a4ae55a3485debc8420eed799acb0ebe65100f465eea49 | TypeScript | 362 | 14 | import { defineConfig } from 'vite';
import { viteStaticCopy } from 'vite-plugin-static-copy';
import { requiredModelFiles } from './src/modelFiles';
const targets = requiredModelFiles.map((file) => ({
src: '../../../models/base/' + file,
dest: 'model',
}));
export default defineConfig({
plugins: [
... |
82b0a5d4466030413e5f84ea148d91d6bc049192e0dc124a3e5f78992f4e6d21 | TypeScript | 369 | 14 | import { LinkPropsVariantOverrides } from '@mui/material/Link';
import { TypographyPropsVariantOverrides } from '@mui/material';
declare module '@mui/material/Link' {
interface LinkPropsVariantOverrides {
whiteText: true;
}
}
declare module '@mui/material/Typography' {
interface TypographyPropsVar... |
e6bebab0f9c32b081d6d9a25731ad1bbc52f89201ee60d381657247cbfd71b73 | TypeScript | 399 | 14 | import { defineConfig } from "vitest/config";
export default defineConfig({
test: {
environment: "jsdom",
include: ["tests/**/*.test.ts"],
coverage: {
provider: "v8",
exclude: ["src/types.ts", "src/app.ts", "src/components/**", "src/worker/**"],
include: ["src/**/*.ts"],
threshold... |
69bd103ce914d5ab1d112f77fa038b2c7e2b581bef002198f1d3f4721e007644 | TypeScript | 413 | 16 | import { ModelFiles } from "./build-args";
interface LoadModelFilesResult {
unload: () => Promise<void>;
modelPath: string;
}
export interface KiwiApi {
cmd: (args: any) => any;
loadModelFiles: (files: ModelFiles) => Promise<LoadModelFilesResult>;
}
export interface KiwiApiAsync {
cmd: (...args: ... |
99be301e3ae5f557de2001c328e7b0815dc0513923c8bcf7c5301a8417f81082 | TypeScript | 420 | 13 | import assert from "node:assert/strict";
import { test } from "vitest";
import { replaceChildrenPreservingFocus } from "../src/components/dom.js";
test("replaces children when nothing inside the root is focused", () => {
const root = document.createElement("div");
const child = document.createElement("section");
... |
0169873ea180a35124258e37ff9f37d5f29a69f85c95cd74359527ef7a9cf804 | TypeScript | 434 | 20 | export interface ExportGraphSettings {
showCurves: boolean;
showSliderBar: boolean;
showLabels: boolean;
showColorKey: boolean;
fileType: ExportGraphFileType;
}
export enum ExportGraphFileType {
png = 'png',
pdf = 'pdf'
}
export const InitalExportGraphSettingsState = {
showCurves: true... |
479a2224d50a53a9193d551441695ab569fdd353a3d94633681f3caf5803a4a0 | TypeScript | 586 | 33 | interface Palette {
[key: number]: string;
}
export const ColorPalette: Palette = {
[-1]: '#e4d4e5',
[-2]: '#d3a9d2',
[-3]: '#c87bc1',
[-4]: '#bf46a6',
1: '#c5e0e3',
2: '#85c5d3',
3: '#59a5cc',
4: '#5481bd',
5: '#545baa',
6: '#533295',
7: '#431066',
8: '#1a0b2a'
};
... |
7e6a30bf78aa9f087d3ce903fe611e668e0ff31ea21165a9442e96f040c66d7f | TypeScript | 602 | 18 | export function formatValue(value: unknown): string {
if (typeof value === "string") return value;
try {
return JSON.stringify(value, null, 2);
} catch {
return String(value);
}
}
export function formatDuration(milliseconds: number): string {
if (milliseconds < 1000) return `${Math.round(milliseconds... |
d1d34aab69911fbdcd70b26d4d97fbccdc33f0d720fc3518add07053e29efbb2 | TypeScript | 615 | 28 | import { defineConfig } from 'vitest/config';
import react from '@vitejs/plugin-react-swc';
import svgr from 'vite-plugin-svgr';
import path from 'path';
// https://vitejs.dev/config/
export default defineConfig({
plugins: [svgr(), react()],
test: {
globals: true,
environment: 'jsdom',
... |
3bea1b7a288a6be689573992a8d9b68bd0ecc718ee2b9211249d2df0f41ba2d0 | TypeScript | 667 | 20 | // ***********************************************************
// This example support/e2e.ts is processed and
// loaded automatically before your test files.
//
// This is a great place to put global configuration and
// behavior that modifies Cypress.
//
// You can change the location of this file or turn off
// auto... |
a8c74304ea91d4e91d8ab3cb524721bd10b9e45452a65db55eb40efa2bbc2d74 | TypeScript | 701 | 26 | import path from "node:path";
import { fileURLToPath } from "node:url";
import { defineConfig, type Plugin } from "vite";
import { workerLicensePlugin } from "./scripts/worker-license-plugin.js";
const root = path.dirname(fileURLToPath(import.meta.url));
export default defineConfig({
build: {
emptyOutDir: tru... |
da1b0e7217412828e85de3fbe768d062473ed75faa276af4fde8eb9c0f909f7b | TypeScript | 837 | 32 | export const MAX_LOCAL_FILE_SIZE = 16 * 1024 * 1024;
export class FileReadGuard {
#revision = 0;
begin(): number {
return ++this.#revision;
}
cancel(): void {
this.#revision += 1;
}
isCurrent(revision: number): boolean {
return revision === this.#revision;
}
}
export function fileToDataUR... |
afa27bf6c562214ad3e61a6a246819386288f1117b45854ed9f1d4ee9be5f164 | TypeScript | 870 | 25 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
13a1d47ec40fc68f033af0186db83fb972825d834038d0cb158636d06ee89c0e | TypeScript | 877 | 36 | import { ThemeOptions } from '@mui/material';
export const customTheme: ThemeOptions = {
typography: {
fontFamily: 'Roboto'
},
components: {
MuiLink: {
variants: [
{
props: { variant: 'whiteText' },
style: {
... |
de3bd98bb503061b7175b75802dd5ae97e5a7cb4886e9d39c9812dc74c897c44 | TypeScript | 887 | 23 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
a7494b84d872dafa573093bd03c545209ee90f64dbf7dbc25531716ef21006f2 | TypeScript | 924 | 27 | import type { JsonValue, OpenAPISchema } from "../../types.js";
export type DataMediaKind = "audio" | "image" | "video";
export function emptyInputValue(schema: OpenAPISchema): JsonValue {
if (schema.type === "array") return [];
if (schema.type === "object" || schema.properties) return {};
if (schema.type === "... |
1980171c25ba9750f2c293a0cf23face802de41e2e26b9804dfd1ead459d8bd7 | TypeScript | 928 | 22 | import { OxidationStatesAPI } from '../data-table/table-models/data-viewer-model';
import { Settings } from './render-graph';
export function renderSpeciesLabel(data: OxidationStatesAPI, canvas: HTMLCanvasElement, settings: Settings) {
const { BAR_HEIGHT, OFFSET_Y } = settings;
if (data.oxidationStateRangeDat... |
caa594a87a3fd003c6b6226254dc735611fef80359e1d94e58bcefba0a07897f | TypeScript | 978 | 27 | import { OxidationStatesAPI } from '../data-table/table-models/data-viewer-model';
import { Settings } from './render-graph';
export function renderKeys(
data: OxidationStatesAPI,
canvas: HTMLCanvasElement,
settings: Settings,
img: HTMLImageElement
) {
const { BAR_HEIGHT } = settings;
if (data... |
2076fcf19bcabff45bc9fc89e8a09ef4f1f3ea11b70acf900c13c977c5af9021 | TypeScript | 1,027 | 15 | # initial_energy
# total_energy = -809.627
# t_series
#########################################################
# step tempk radg etot velet qscore rmsd
#unit step tempk radg etot velet qscore rmsd local go repul stack_rna hbond... |
4c6e898798a147da2fa5726723b63b414dd5b7be5c63e0db2fb55e63f402f13f | TypeScript | 1,073 | 22 | import { describe, it, expect } from 'vitest';
import { KiwiBuilder } from '../src/index.js';
// KiwiBuilder with a fake api, so these run without the wasm build.
const builderWith = (api: object) => new (KiwiBuilder as any)(api) as KiwiBuilder;
describe('KiwiBuilder.build() model file cleanup', () => {
it('keeps... |
0d023508ec4124bdd3e2c2d9af98215b20ab58d769f0551a2f574a869fa24770 | TypeScript | 1,099 | 23 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
31a13f78b541e9f44884b08148a0d10277b21decaeafecf8cdcfcc8ae34a22d4 | TypeScript | 1,120 | 31 | import { OxidationStatesAPI } from '../data-table/table-models/data-viewer-model';
import { Settings } from './render-graph';
import { getPositionFromValue } from '@/utils/GraphUtil';
export function renderSliderLine(
data: OxidationStatesAPI,
canvas: HTMLCanvasElement,
mpValue: number,
settings: Setti... |
5ad9be3e489f3dc678a7552e9fede56de56edfe95a0c5ea12d1828c50c6ad4af | TypeScript | 1,159 | 15 | # initial_energy
# total_energy = 26424332.899
# t_series
#########################################################
# step tempk radg etot velet qscore rmsd
#unit step tempk radg etot velet qscore rmsd local go repul stack_rna hbond... |
40328f6d445ab1d63d0bf7385e5d1909534e72ddd7fea06306ef6c6b5362be54 | TypeScript | 1,246 | 32 | import type { JsonObject, JsonValue, UnknownObject } from "../types.js";
export function isObject(value: unknown): value is UnknownObject {
return typeof value === "object" && value !== null && !Array.isArray(value);
}
export function isJsonObject(value: unknown): value is JsonObject {
return isObject(value) && O... |
4e93e29e42a40b82ce2cd58cf7b34730351ffa27f9ccade8ab2dbbef41a43854 | TypeScript | 1,335 | 50 | import { KiwiBuilder, Kiwi, TokenInfo } from 'kiwi-nlp';
import kiwiWasmPath from 'kiwi-nlp/dist/kiwi-wasm.wasm?url';
import { modelFiles } from './modelFiles';
let kiwiBuilder: KiwiBuilder | null = null;
let kiwi: Kiwi | null = null;
let version: string | null = null;
export type WorkerRequest =
| { type: 'init'... |
59651f4042c2ef86d1810278d0a645549bddc33fa31c667c0ece20ac17655330 | TypeScript | 1,375 | 44 | import { atom } from 'jotai';
import { ExportGraphSettings, InitalExportGraphSettingsState } from '@/models/ExportGraphModel';
import {
LoadingState,
OxidationStatesTableItem,
OxidationStatesAPI,
Boundary
} from '@/features/data-table/table-models/data-viewer-model';
export const dataViewerStateAtom = ... |
5875717aa762b52a5316615a7830335814d594edd2adb85eb56f0c00a07aeb1a | TypeScript | 1,488 | 50 | import AWS = require('aws-sdk');
// import * as AWS from './aws-sdk-2.141.0';
//AWS.config.update({
// region: process.env.AWS_REGION,
// credentials: new AWS.Credentials(
// process.env.AWS_ACCESS_KEY_ID,
// process.env.AWS_SECRET_ACCESS_KEY )
//});
let batch = new AWS.Batch({
apiVersion: '20... |
271fc9771f68d9e28b89b5d589cb3ccc72994ac16d045f7a24afe365b6806eb3 | TypeScript | 1,544 | 65 | export enum LoadingState {
Initial = 'Initial',
Loading = 'Loading',
Loaded = 'Loaded',
LoadedWithMessage = 'LoadedWithMessage',
Error = 'Error'
}
export interface OxidationStatesTableItem {
id: number;
oxidationState: JSX.Element[];
likelihoodCurrentMappedPotential: number;
likelih... |
9e5b3adbe060e989de03ca12221f50e74ad11db0bd55b104f8b25f15035f4c82 | TypeScript | 1,612 | 53 | import { createBarPlotData, createPlotData, drawPlotDataCanvas } from '@/features/render-graph/render-graph';
import { renderSpeciesLabel } from '../render-graph/render-species-label';
import { renderSliderLine } from '../render-graph/render-slider';
import { renderKeys } from '../render-graph/render-key';
import { Exp... |
0f294cd7d439d1b0735518a0166844ff117d9e17d08de3db4d53cf29a3c5289a | TypeScript | 1,618 | 48 | import { Boundary, OxidationStatesAPI } from '@/features/data-table/table-models/data-viewer-model';
import { toFixedNumber } from './GraphUtils/BoundariesUtil';
function compareBoundaries(a: Boundary, b: Boundary) {
return a.value - b.value;
}
export function formatOxidationState(state: number) {
if (state >... |
c83295310b73fa5da384824e6d9b3e0726f0661191281dfccd7c4dac73edf013 | TypeScript | 1,873 | 64 | //import process = require('process');
import AWS = require('aws-sdk');
AWS.config.update({
region: process.env.AWS_REGION,
credentials: new AWS.Credentials(
process.env.AWS_ACCESS_KEY_ID,
process.env.AWS_SECRET_ACCESS_KEY )
});
let sqs = new AWS.SQS({
apiVersion: '2012-11-05',
region: ... |
1f4d451fb20206153815c777fcd349e258f9bebba45c02879d73b6823a2adb2b | TypeScript | 1,917 | 52 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
4a7fe43617f797ac730701829f49b55ece3b758878c50c90bf3cec82d31607f6 | TypeScript | 1,974 | 69 | import { WorkerRequest, WorkerResponse } from './worker.js';
import { TokenInfo } from 'kiwi-nlp';
const elVersion = document.getElementById('version')!;
const elInput = document.getElementById('input') as HTMLInputElement;
const elResultTable = document.getElementById('result') as HTMLTableElement;
const worker = ne... |
8eb6ad6c8b73da6bbec9163fb034eb9b3b248fdf34f557aacb76163714bd3f57 | TypeScript | 1,990 | 68 | import type {
InputValidator,
ValidationIssue,
ValidationRequest,
ValidationResponse,
} from "../types.js";
import { createInputValidator } from "../lib/input/validation.js";
import { isObject } from "../lib/json.js";
import { isOpenAPIDocument, isOpenAPISchema } from "../lib/transport/guards.js";
const worke... |
eef78f39fd2b94f3fba062aa2930d7786e1fd4301e35630d2ee12b74181d3314 | TypeScript | 2,062 | 60 |
export class TaskTemplate {
private _template: any;
constructor(data: string = DEFAULT_TEMPLATE){
this._template = JSON.parse(data);
}
parse(newValue: string){
this._template = JSON.parse(newValue)
}
stringify(start: number[]=[0,0,0]){
console.log(this._template.input.params.... |
33e3332401a450f830b9625c4df94a1d0a4815e2f292e312f9b49bfafe170455 | TypeScript | 2,343 | 68 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
6c94d6e54c03568ee46eabccb78f97da0b87e4fbaaabcf75af82a61d078b556b | TypeScript | 2,446 | 67 | import { readFileSync, readdirSync } from "node:fs";
import type { Plugin } from "vite";
type PackageLicense = { license: string; name: string; text: string; version: string };
type BundleOutput = { modules?: { [moduleId: string]: object }; type: string };
type BundleOutputs = { [fileName: string]: BundleOutput };
ex... |
d4bb3851f024138a1170e2b6021b9b073fddfe752d2158ca203646f921b0ed5b | TypeScript | 2,543 | 67 | import { existsSync, readFileSync, readdirSync, unlinkSync, writeFileSync } from "node:fs";
type PackageMetadata = {
dependencies?: { [name: string]: string };
license?: string;
version?: string;
};
function readLicenseSections(path: URL): Map<string, string> {
const sections = new Map<string, string>();
co... |
9bb1243646c69f66ce4149df01b4aeb4929471ea936a5446ac635f136f441ffb | TypeScript | 2,631 | 81 | import assert from "node:assert/strict";
import { test } from "vitest";
import { parseSSE, readSSE } from "../src/lib/transport/sse.js";
test("parses multiline, primitive, and non-JSON SSE data", () => {
assert.deepEqual(parseSSE('event: output\ndata: {"chunk":"a"}'), {
type: "output",
data: { chunk: "a" },... |
ca5ceb80d3d7ecbc40f3853f0867c9fe5e1f1b03f9984ad42a0676950ef14f67 | TypeScript | 2,806 | 81 | import type { JsonObject, StreamEvent } from "../../types.js";
import { isJsonObject, isJsonValue } from "../json.js";
import { responseError } from "./http.js";
const MAX_SSE_FRAME_LENGTH = 1024 * 1024;
type SSESeparator = { index: number; length: number };
export async function* readSSE(response: Response): AsyncG... |
7bf6b61adc82f75fa10cc13bf0558d51141ce99fbe8e53df7e43b3d84c4de70a | TypeScript | 2,913 | 85 | import type { PredictionEnvelope } from "../../types.js";
import { isObject } from "../json.js";
import { predictionEnvelope } from "./guards.js";
type ErrorResponse = { detail?: string | unknown[]; error?: string };
const MAX_JSON_RESPONSE_LENGTH = 16 * 1024 * 1024;
const MAX_ERROR_RESPONSE_LENGTH = 1024 * 1024;
e... |
c570a49b39d49490bdbd503c4746e07044689a046309a4ab5964efd8af5b1b93 | TypeScript | 3,043 | 113 | import type {
OpenAPIDocument,
OpenAPISchema,
ValidationIssue,
ValidationRequest,
ValidationResponse,
} from "../../types.js";
import { isObject } from "../json.js";
const TIMEOUT = 10_000;
type PendingValidation = {
resolve: (issues: ValidationIssue[]) => void;
timeout: number;
};
let worker: Worker |... |
9c3e53db2b7a4d7eca7dac615444c160325398d8882350c9364d26002b24c367 | TypeScript | 3,481 | 123 | import assert from "node:assert/strict";
import { test } from "vitest";
import {
constraintText,
defaultInput,
effectiveSchema,
enumValues,
initialInputValue,
orderedProperties,
playgroundCapabilities,
} from "../src/lib/input/openapi.js";
test("resolves nullable references and preserves parent metadata... |
d09bf74e3b3ea01803308b679226fe13e85770d5521e21e6b4168157062c3bf2 | TypeScript | 3,482 | 99 | import assert from "node:assert/strict";
import { test } from "vitest";
import {
appendBoundedText,
applyMetric,
boundedTextItems,
MAX_METRIC_ITEMS,
MAX_METRIC_ITEMS_TEXT,
} from "../src/lib/state/runtime.js";
import {
appendTraceEvent,
boundedTraceData,
enforceTraceBudget,
MAX_TRACE_TOTAL_TEXT,
tr... |
70a9c86366a8adcda0b403e5e6630aabbd9984370b61057c1e1a78a304a62d03 | TypeScript | 3,657 | 115 | import assert from "node:assert/strict";
import { test } from "vitest";
import { InputState } from "../src/lib/state/input-state.js";
import { PredictionState } from "../src/lib/state/prediction-state.js";
import type { PredictionApi } from "../src/types.js";
test("retains the selected run mode independently of the o... |
ea4a8e851faf091b0d46e29109c4ea5ab53e26cf5020019febf22c1c19b3bd51 | TypeScript | 3,773 | 100 | import assert from "node:assert/strict";
import { test } from "vitest";
import { fileToDataURI, FileReadGuard, MAX_LOCAL_FILE_SIZE } from "../src/lib/input/files.js";
import { dataMediaKind, emptyInputValue, formatBytes, isDataURI } from "../src/lib/input/input.js";
test("rejects local files larger than 16 MiB before... |
9eefc73b8b1132ba2dfcbe039866be9b469c23c2c1b91a70af54e0ee9f15646a | TypeScript | 3,830 | 120 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
28894aca796ecf27624beb7c53aca78c5c150120c26d42ff06c4ddd2d7151a45 | TypeScript | 4,083 | 125 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
841cdb28fe5112bf7a5d569868394939a34f0da712b0e2189d99ecdfb5689faf | TypeScript | 4,207 | 125 | import type { RequestTrace, TraceEvent, UnknownObject } from "../../types.js";
export const MAX_TRACE_EVENTS = 100;
export const MAX_TRACE_PAYLOAD_TEXT = 64 * 1024;
export const MAX_TRACE_TOTAL_TEXT = 1024 * 1024;
const MAX_TRACE_DEPTH = 10;
const OMITTED_PAYLOAD = "[payload omitted: trace budget exceeded]";
const OMI... |
c98c422a832563742c5bcb9995e16f06fb3092236d054dc77c8634656a342330 | TypeScript | 4,438 | 125 | import type {
HealthResponse,
OpenAPIDocument,
PlaygroundConfig,
ConnectionApi,
PredictionApi,
PredictionEnvelope,
StreamEvent,
StreamOptions,
SubmitOptions,
} from "../../types.js";
import { isObject } from "../json.js";
import { isHealthResponse, isOpenAPIDocument } from "./guards.js";
import { par... |
2e7fcc5be9464c0ef02fedeb0dd476d037fe20222fb68a89ec99c26c26839ab5 | TypeScript | 4,657 | 128 | import type {
JsonObject,
JsonValue,
OpenAPIDocument,
OpenAPISchema,
OpenAPISchemaMap,
PlaygroundCapabilities,
PlaygroundEndpoint,
} from "../../types.js";
import { emptyInputValue } from "./input.js";
const REF_PREFIX = "#/components/schemas/";
type EndpointDescriptor = {
endpoint: PlaygroundEndpoint... |
afa883813285ac223ac08cc9d5b04784cd4fe3b20ea8876d4b0591d475ff2c10 | TypeScript | 4,692 | 163 | export type StringMap<T> = { [key: string]: T };
export type UnknownObject = StringMap<unknown>;
export type JsonPrimitive = boolean | null | number | string;
export type JsonValue = JsonObject | JsonPrimitive | JsonValue[];
export interface JsonObject {
[key: string]: JsonValue;
}
export type HealthResponse = {
... |
d79d21389921939851cd5c132dd9f8855d1035e05224f4f195e69fbce6706479 | TypeScript | 4,763 | 147 | import { HttpError } from "../transport/http.js";
import type {
JsonValue,
MetricMap,
PredictionEnvelope,
RequestTrace,
RunMode,
} from "../../types.js";
export const TERMINAL = new Set(["succeeded", "failed", "canceled"]);
export const MAX_RAW_EVENT_TEXT = 1024 * 1024;
export const MAX_STREAM_OUTPUT_TEXT = ... |
63e5584a1af03393f8f1663ea575ce86513d67704ecc6d8237291f5956353f62 | TypeScript | 4,793 | 143 | type ElementAttributeValue = boolean | number | string | EventListener | null | undefined;
type ElementAttributes = { [name: string]: ElementAttributeValue };
type ElementChild = Node | string | false | null | undefined;
type TabItem<T extends string> = { value: T; label: string };
type StatusVariant = "error" | "neutr... |
1d03f5e448c1a336738c8b40618248fc14711cd74e9a4a6345dbd3033df62de2 | TypeScript | 4,800 | 206 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
79c574cd5ecad4ea593ebfce8b15a60254f2f758b1159139ac77b0dcfa377d63 | TypeScript | 4,846 | 172 | import assert from "node:assert/strict";
import { test } from "vitest";
import {
createInputValidator,
normalizeOpenAPISchema,
normalizePythonPattern,
validateURI,
} from "../src/lib/input/validation.js";
test("normalizes nullable schemas and Python patterns", () => {
assert.deepEqual(normalizeOpenAPISchema... |
86d85e29c2c779c9cc5c263c19a58ea3f2465aa53fc451f71260e6c13bf53eab | TypeScript | 4,935 | 161 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
dae5344c546ea6b840802da025fd274d127aa48f486b9822e83716e20067664a | TypeScript | 5,037 | 162 | import type {
ConnectionApi,
HealthResponse,
OpenAPIDocument,
PlaygroundCapabilities,
} from "../../types.js";
import { playgroundCapabilities } from "../input/openapi.js";
import { errorMessage } from "../json.js";
import { Store } from "./store.js";
const FALLBACK_TARGET = "http://localhost:8393";
export c... |
0e2e4c95870b4b2a31a308c727bc3e4762b04e84c7c2274f9e743bbfdba8931d | TypeScript | 5,130 | 146 | import initKiwi from './build/kiwi-wasm.js';
import { KiwiApi } from './kiwi-api.js';
import { Kiwi } from './kiwi.js';
import { BuildArgs } from './build-args.js';
async function createKiwiApi(wasmPath: string): Promise<KiwiApi> {
const kiwi = await initKiwi({
locateFile: (path) => {
if (path.... |
f5333b603056214d88bc8e38817dcf11b981ffa11640cdb8b8823dc0fe3c3844 | TypeScript | 5,494 | 151 | /**
* A single file to be loaded. The key is the name of the file and the value is the file data.
* The file data can be a string representing a URL or an ArrayBufferView directly containing the file data.
*/
export type ModelFiles = { [name: string]: ArrayBufferView | string };
/**
* A single user word to add.
*... |
db7372e0b12741de9288ea0771513949aaf13d33191b39610014730bb33791b0 | TypeScript | 5,664 | 193 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
160c9bf45d56325514eab4934c2500a9b46f9dccd8ac6ec8017d251c8ccd1d6a | TypeScript | 5,901 | 227 | import type {
InputMode,
JsonObject,
OpenAPIDocument,
PlaygroundCapabilities,
ValidationIssue,
} from "../../types.js";
import { defaultInput } from "../input/openapi.js";
import {
errorMessage,
isJsonObject,
isJsonValue,
parseInputObject,
serializeInput,
} from "../json.js";
import { disposeValida... |
b945bd7ac93e854def868c1118196f7a44f4604acde90be6a50a1b7af830e5f5 | TypeScript | 6,142 | 193 | import type {
HealthResponse,
OpenAPIDocument,
OpenAPIPathItem,
OpenAPISchema,
PredictionEnvelope,
StringMap,
} from "../../types.js";
import { isJsonObject, isObject } from "../json.js";
const MAX_SCHEMA_DEPTH = 64;
const MAX_SCHEMA_NODES = 10_000;
export function isHealthResponse(value: unknown): value... |
2527708f315df7ec3995817b90aef5d773a2b1cf263d234f06c71a29e31b5d1d | TypeScript | 6,173 | 193 | import assert from "node:assert/strict";
import { test } from "vitest";
import { ConnectionState } from "../src/lib/state/connection-state.js";
import type {
ConnectionApi,
HealthResponse,
OpenAPIDocument,
PlaygroundConfig,
} from "../src/types.js";
test("loads config and connects to its default target", asyn... |
dcd7f58c6f2097c5d90233bf7d975634c379a4c26ecf8c6256262ac2dd2019db | TypeScript | 6,613 | 205 | /*
@license
Copyright 2019 Google LLC. All Rights Reserved.
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agre... |
ec42577693e1ddec71fd5cbbd08fe944b18045ac2407c5aa1d02b7a39620a60f | TypeScript | 6,993 | 184 | import { ColorPalette, TextColor } from '@/constants/colors';
import { PlotData } from '@/models/PlotDataModel';
import { formatOxidationState } from '@/utils/GraphUtil';
import { OxidationStatesAPI } from '../data-table/table-models/data-viewer-model';
const GRAPH_POINTS = 250;
export interface Settings {
BAR_WI... |
13c7fd5f28b9788628ce807f001977e8e263b8d9d9c9e90cfa5ed9f434f5b8df | TypeScript | 7,173 | 232 | import assert from "node:assert/strict";
import { test } from "vitest";
import { CogApi } from "../src/lib/transport/api.js";
import { isOpenAPIDocument } from "../src/lib/transport/guards.js";
import type { JsonObject } from "../src/types.js";
import {
HttpError,
parseJSONResponse,
parsePredictionResponse,
re... |
37bcead4e79ccca29143ff191a13fa91ee31b80f1cd738f18d29cf0f098e164d | TypeScript | 7,793 | 249 | import assert from "node:assert/strict";
import { test } from "vitest";
import { InputState } from "../src/lib/state/input-state.js";
import type {
OpenAPIDocument,
PlaygroundCapabilities,
ValidationIssue,
ValidationRequest,
ValidationResponse,
} from "../src/types.js";
const document: OpenAPIDocument = {
... |
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