sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
2dfda8bda413a07bb19517783f7f5c0fea8d96363f1f8d9db95776bbb4cc52da | C/C++ | 22,526 | 791 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
bc09217639e9f83ef9ec99c89db4036ab36d685b2402c0621690e76744b676ff | C/C++ | 22,526 | 696 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
fd0f0e521adb31c20c447008aceb61a0c1924c13c26d3fb420b07502367f4e15 | C/C++ | 22,624 | 553 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License version 3 as published b... |
9adf6e5fa8e53ed58c5a4c48d6f57c8e5825553cac897d1823f539555825c98c | C/C++ | 22,625 | 616 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
*
* $Id: xdrfile.h,v 1.6 2009/05/18 09:06:38 spoel Exp $
*
* Copyright (c) Erik Lindahl, David van der Spoel 2003,2004.
* Coordinate compression (c) by Frans van Hoesel.
*
* This program is free software; you can redistribute it and/or
*... |
95f2f118e51e09947cec5d9bbedc2b8bda4f50219e8a34ee784662f53b200931 | C/C++ | 22,715 | 562 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2010 Jitse Niesen <jitse@maths.leeds.ac.uk>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU L... |
a806f74f4eacf3942b2b116e3b3c1d3beed8de6fe0512c800c4071c98a401192 | C/C++ | 22,734 | 648 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
d8481129205b6aac50c5e1530045708fed2ccdea65f6ae19dbfdfbc6bf3d6b64 | C/C++ | 22,843 | 648 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
34bc805ed6a1f5a58e3f7a4d5eb6431110f0293d95dba0d8c1eaf56bf12082e5 | C/C++ | 22,871 | 571 | // move_pivot_local.h --- Move: Pivot move using Gaussian distributions around current state
// Copyright (C) 2006-2010 Jes Frellsen, Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as publi... |
29ec21c9cec2cd34c7e191dd2e0643cbfc074031d3b1028089d1d941bc7c102f | C/C++ | 22,908 | 765 | #ifndef G_BASE_DEFINED
#define G_BASE_DEFINED
#define GCLIB_VERSION "0.12.7"
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif
#if defined(__WIN32) || defined(__WIN32__) || defined(_WIN32) || defined(_WIN64) || defined(__MINGW64__) || defined(__WINDOWS__)
#ifndef _WIN32
#define _WIN32
#endif
#ifndef _WIN64
... |
bb9baa2e3c132294074b47104fc11686f1aad381e940b59865e356bdecef64b5 | C/C++ | 22,921 | 515 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
9cf5f22fa62d06ed49a33ecd56b3188f6bbce11dcce0616b9ec35d269b2924b3 | C/C++ | 22,954 | 587 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2007 Michael Olbrich <michael.olbrich@gmx.net>
// Copyright (C) 2006-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; yo... |
296ce1ba58374e357d4c850b8b67dd953d65f2372109ef9787afb0751fce04a5 | C/C++ | 23,175 | 483 | // Copyright (C) 2014-2015 by Anders S. Larsen
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any ... |
8be63a1f0e2143577c72059dc76cb2f1177d0c2ec535f1692f714a089b520f29 | C/C++ | 23,215 | 710 | /*
* Copyright (c) 2020-2022, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions are met:
* * Redistributions of source code must retain the above copyright notice, this list ... |
be429a9ed38cf27bed7831a356481cb2cecbc314b5812ac2f14d6a29ca52eff6 | C/C++ | 23,215 | 710 | /*
* Copyright (c) 2020-2022, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions are met:
* * Redistributions of source code must retain the above copyright notice, this list ... |
465d4d29ddd022642b70c7d697c890c4e8215256336f8d4d88fa81e5b4119d4c | C/C++ | 23,256 | 829 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
e91ff027a2a8b3133e515d923607c18e3fb286eed1abc2ee91c955f2dea53af3 | C/C++ | 23,379 | 738 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
0a9721f220f98fd45002d9c0eddd5fa3bd9107a6e56fc1415bcaeeb84cb3946f | C/C++ | 23,390 | 711 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
17f460bd4507781ac38fcab071eff6abe001c5b6d18e767fddde2e470fc71ed1 | C/C++ | 23,393 | 704 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
b75bdfe0a31417adbcbe95a0d6d2c482529c10e38347ca663ed846f8b7b518b7 | C/C++ | 23,395 | 636 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
6639296ad889a94101536c6e4561705673295e78e23163c6fb311f2b99f0bfd7 | C/C++ | 23,451 | 502 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
bb644014ab21d823a45d76352749d43bb3840fd3e025e54625a1782b3f353315 | C/C++ | 23,574 | 448 | // rotamer_library_dunbrack_parameters.h --- Parameters for the Dunbrack backbone independent rotamer library
// From: R. L. Dunbrack, Jr. and F. E. Cohen.
// "Bayesian statistical analysis of protein
// ... |
747c3c7c591374c14b1d7661ce9f59a7059094fc5e1d180b53c0db87ebdff63c | C/C++ | 23,655 | 692 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
7aa3ecce8539afd721d0423972d4389ca4d4caea7312bf869dc8a44abd06052d | C/C++ | 23,714 | 657 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
a2ad9941bc0145872c04adbf909b42f89711577ebc80dd00df518dfc2beed36e | C/C++ | 23,756 | 711 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
7e9d47dbff6400e696cb054ba2c34c710cc2f4b6ab717918fb0615b9eb4b66c6 | C/C++ | 23,846 | 766 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
ed53b8850f03570903e56cca12a0ab16fdc508b2d645a2d1f69174719d240bab | C/C++ | 23,849 | 621 | /*
* Copyright (c) 2020-2022, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions are met:
* * Redistributions of source code must retain the above copyright notice, this list ... |
de9766d3425f628ab4327e25e2c9371bcb09bac025c3959143f8d0f9a9c91f06 | C/C++ | 23,973 | 537 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2007-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms o... |
e5ed095814cf43ccca908cf764d7a256f43ee18216040332870c7f14be49d045 | C/C++ | 23,977 | 628 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
10b681a9608d3cc3cfa775bcfddbba4254b00fe55968961200c85d504d3a0e9b | C/C++ | 24,111 | 711 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
b95f2428b4a9f0ac8c0a290104cdca6ce674ca8e320ceeae2df10fc47814020a | C/C++ | 24,134 | 485 | /*
* -----------------------------------------------------------------
* $Revision: 1.15 $
* $Date: 2009/09/09 22:25:05 $
* -----------------------------------------------------------------
* Programmer(s): Allan G. Taylor, Alan C. Hindmarsh, Radu Serban,
* and Aaron Collier @ LLNL
* ------------... |
0ca4d0ba019f899ce6d7b9d467458fd4bc0820b961bf0639aa8c61b18f39e28f | C/C++ | 24,135 | 485 | /*
* -----------------------------------------------------------------
* $Revision: 1.15 $
* $Date: 2009/09/09 22:25:05 $
* -----------------------------------------------------------------
* Programmer(s): Allan G. Taylor, Alan C. Hindmarsh, Radu Serban,
* and Aaron Collier @ LLNL
* ------------... |
b63fc47fe6f7ed0ef4ba9398f743f955cc1650f5dca23cb26ec3728abdc857db | C/C++ | 24,135 | 690 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2009-2011 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
22b1c4f93759a358741748ae5796fcdcece8689fddf10030a9992c81eac21291 | C/C++ | 24,167 | 738 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
016fb82cf30f08a59d8dc610a5ae56ad0ae6ab6dfc9c6750edcde1dffa23456d | C/C++ | 24,235 | 494 | /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* ... |
9db7ba36acbcea807854d4ca71d84225346f0dd7d3ab8626e50fe6fa45666c9f | C/C++ | 24,292 | 763 | #ifndef GFASTAFILE_H
#define GFASTAFILE_H
#include "GBase.h"
#define CAPINC 64
#define SEQCAPINC 256
#define DEF_FASTA_DELIM (char*)">"
class GFastaCharHandler;
class GFastaFile;
class FastaSeq { /* fasta record storage */
friend GFastaCharHandler;
friend GFastaFile;
protected:
int id_cap; /* alloca... |
78fb812db3193244a54ab12ed5d7da135eef1d7ec2981d0f3544dd00cb606c14 | C/C++ | 24,344 | 515 | /*
* -----------------------------------------------------------------
* $Revision: 1.13 $
* $Date: 2007/11/26 16:19:59 $
* -----------------------------------------------------------------
* Programmer(s): Scott D. Cohen, Alan C. Hindmarsh, Radu Serban
* and Dan Shumaker @ LLNL
* ----------------... |
3babfa8b4e9c8182b8d4439a8970a5e28aedd1f2655d9ae19cede9682977779e | C/C++ | 24,374 | 533 | /*
* Copyright (c) 2020-2022, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions are met:
* * Redistributions of source code must retain the above copyright notice, this list ... |
f2cce1c99ffc849611f3d4f4d3ce5e97e8e6262913b0c71f37792976bdd2bb37 | C/C++ | 24,507 | 646 | /*
* Copyright (c) 2020-2022, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions are met:
* * Redistributions of source code must retain the above copyright notice, this list ... |
e49620354e953b7c7c207ca4b1c161e014a4158659bdbe56b02fae835abc799b | C/C++ | 24,512 | 512 | /**
* (C) Copyright 2026 IBM. All Rights Reserved.
*
* Licensed under the MIT license. See LICENSE file in the project root for details.
*/
#pragma once
#include "cuda_buffer.h"
#include "utility_functions.h"
#include <iostream>
#include <memory>
#include <mutex>
#include <queue>
#include <string.h>
#include "c... |
5dd14782c1495969047ea045af9e9a111237612bd82efc95439494ecaeaadd4b | C/C++ | 24,562 | 918 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
48b917a4776dbe2c0a7212f47e1b08db8156841b892fc26051c9c30127af2784 | C/C++ | 24,620 | 837 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License version 3 as published by t... |
01cbfa51eadcff1c1c48a6fd7a2eb3343c655420fbfc92052caa355e3003dcf9 | C/C++ | 24,829 | 516 | /**
* (C) Copyright 2020, 2021, 2022, 2023, 2024 IBM. All Rights Reserved.
*
* This code is licensed under the Apache License, Version 2.0. You may
* obtain a copy of this license in the LICENSE.txt file in the root directory
* of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
*
* Any modific... |
6bd2464edb41ee6f8b81224a2044026f33872a1a7106aa44342e39b586c774d2 | C/C++ | 24,927 | 681 | // dof_iterator.h --- Iterators over degrees-of-freedom
// Copyright (C) 2006-2010 Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either ver... |
49b4fa21f666f046ed3404fcd07050edd3bdec59cc2fe58d83195947c673cbd9 | C/C++ | 25,079 | 581 | #pragma once
namespace KwaController {
using namespace System;
using namespace System::ComponentModel;
using namespace System::Collections;
using namespace System::Windows::Forms;
using namespace System::Data;
using namespace System::Drawing;
/// <summary>
/// Summary for MainForm
/// </sum... |
4a87e9ed6b2a850b0c14201eee809d449871f84654620d9823069395e81bd6ab | C/C++ | 25,377 | 846 | #ifndef _GALIGNEXTEND_H
//greedy gapped alignment extension
//(mostly lifted from NCBI's blast gapped extension code)
#include "GBase.h"
#include "GList.hh"
#include "gdna.h"
enum {
gxEDIT_OP_MASK = 0x3,
gxEDIT_OP_ERR = 0x0,
gxEDIT_OP_INS = 0x1,
gxEDIT_OP_DEL = 0x2,
gxEDIT_OP_REP = 0x3
};
#d... |
1f5b857458721334ab809e93192ddef6a4b51e870b7d7a20075f374bd1870969 | C/C++ | 25,475 | 628 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License version 3 as published b... |
9a428792c465a0c84412d01fc6051a8da49d44530dfbc5c670bfd28aa19f6c4f | C/C++ | 25,692 | 846 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
11baa3b1cb46cc204f383f489bbd016420f4ab0ab962448bcaf5985a91142fe6 | C/C++ | 26,105 | 698 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
541056e6352ec3c5a80dd240b51d3a29ec1fb422b1fbd3506cce2cfe0a4956e3 | C/C++ | 26,111 | 708 | /**
* (C) Copyright 2026 IBM. All Rights Reserved.
*
* Licensed under the MIT license. See LICENSE file in the project root for details.
*/
#pragma once
#include "rng.h"
#include "weight_clipper.h"
#include "weight_drifter.h"
#include "weight_modifier.h"
#include "weight_remapper.h"
#include <cfenv>
#include <ios... |
8a9a34720a3b31f3b5b1c5e9a92214de963b85b1a859fab5885e28a587c8c8c5 | C/C++ | 26,136 | 848 | /***********************************************************************
* Software License Agreement (BSD License)
*
* Copyright 2008-2011 Marius Muja (mariusm@cs.ubc.ca). All rights reserved.
* Copyright 2008-2011 David G. Lowe (lowe@cs.ubc.ca). All rights reserved.
*
* THE BSD LICENSE
*
* Redistribution an... |
c909249b9514bd7fb7bb3c1fbecbd5768bf4ab3ad89e9256e00aa4a082f3ea87 | C/C++ | 26,146 | 661 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
c391eff2cf2a717304a681188408b9e8eb0085b03bd09b5e46500fc043d37af1 | C/C++ | 26,431 | 801 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
249e108d4518f6bd1efd528b7d98193487e822dbea84828ccbb83218968be9f7 | C/C++ | 26,464 | 714 | /**
* (C) Copyright 2020, 2021, 2022, 2023, 2024 IBM. All Rights Reserved.
*
* This code is licensed under the Apache License, Version 2.0. You may
* obtain a copy of this license in the LICENSE.txt file in the root directory
* of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
*
* Any modific... |
f8df1e674a0a7176f1d786e1a6c8d67f926eb5fd4363eb61f92833dc7319692f | C/C++ | 26,521 | 614 | // profasi_excluded_volume.h --- PROFASI excluded volume energy term
// Copyright (C) 2010 Pengfei Tian, Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software ... |
f5b57550a1c36bb699cfc6c1c68c284ae7789257c4394b004c766182eb5cf809 | C/C++ | 26,808 | 718 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
734e594dbe428f54ffec94d7b223c7419e8b30a1d6a4080b69151e3ec98d1225 | C/C++ | 26,963 | 856 | /** @file mexutils.h
** @brief MEX utilities
** @author Andrea Vedaldi
**/
/*
Copyright (C) 2007-12 Andrea Vedaldi and Brian Fulkerson.
All rights reserved.
This file is part of the VLFeat library and is made available under
the terms of the BSD license (see the COPYING file).
*/
#ifndef MEXUTILS_H
#define ... |
a41e256699a3d772c2ddbd7f6b583f224a214acf7adfdfb631337bae215af234 | C/C++ | 27,059 | 476 | /**
* (C) Copyright 2026 IBM. All Rights Reserved.
*
* Licensed under the MIT license. See LICENSE file in the project root for details.
*/
#pragma once
#include "math_util.h"
#include "rng.h"
#include "rpu.h"
#include "rpu_pulsed_meta_parameter.h"
#include "rpu_simple_device.h"
#include "utility_functions.h"
#in... |
419af79d2ce452c55be08e2e14c0d288bc2934b2281e42779e0327309f9193e5 | C/C++ | 27,245 | 481 | /**
* (C) Copyright 2020, 2021, 2022, 2023, 2024 IBM. All Rights Reserved.
*
* This code is licensed under the Apache License, Version 2.0. You may
* obtain a copy of this license in the LICENSE.txt file in the root directory
* of this source tree or at http://www.apache.org/licenses/LICENSE-2.0.
*
* Any modific... |
b273e17ae04e04e80774c362e60bdb8a7d4a0b7c09bbd18ff95592c2ca31a44a | C/C++ | 27,522 | 777 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
3151c4e3271a8ab345e27051f4ad7bc2a4161c483b0bae3d33ce4f6ca7242cb5 | C/C++ | 27,523 | 619 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2008 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
f3bd1055b6b327ce74509a9b89b8ac8a88ec660e166f43913214d19f456afa41 | C/C++ | 27,523 | 905 | /***********************************************************************
* Software License Agreement (BSD License)
*
* Copyright 2008-2009 Marius Muja (mariusm@cs.ubc.ca). All rights reserved.
* Copyright 2008-2009 David G. Lowe (lowe@cs.ubc.ca). All rights reserved.
*
* THE BSD LICENSE
*
* Redistribution an... |
e81d3782b25f58d90b09c29acf28333db66aed3a5512d456b4c6d629c083645c | C/C++ | 27,854 | 799 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
6b11862b73bfe3d74784d367a3f743753f0bdfbb569eeb27d10e56ed326e53bd | C/C++ | 27,938 | 745 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2009 Mathieu Gautier <mathieu.gautier@cea.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of th... |
d9a2c844f6d95a56314a1d1c9a0849185f8b00ff6d8a58b37ccc6a978876f6d1 | C/C++ | 28,001 | 782 | // move_cra.h --- Concerted rotation (with bond-angle modifications) move.
// See: UlmSchneider, Jorgensen, J. Chem. Phys, 2003
// Includes new strategy for post-ration solution selection
// Copyright (C) 2006-2008 Wouter Boomsma, Sandro Bottaro, Jesper Ferkinghoff-Borg
//
// This file is ... |
afbc2d573ef0c1278309efaeffe1a12100c60fdabf19c76a99abf51dd12d5db3 | C/C++ | 28,028 | 759 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2010 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License version 3 as published by t... |
b478e2d3073fc6be0890842e08eec6758de92e4b6119d6825dfb2261677b78b4 | C/C++ | 28,177 | 726 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
1423ff5b4752abbeb272a642e5cc7c74c6bffd6a90c8dab15f9f79b6d4e653a7 | C/C++ | 28,672 | 814 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
e53a81a35b040065e313e05d8780302acfa570dc5ef3710c57fa6d25a4d0e0f8 | C/C++ | 28,685 | 792 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify... |
9d08e897b9e27cdc89769c41f3a8aad9bf60f5675ce057578e39588b9ec2c436 | C/C++ | 28,700 | 999 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
9612077b7c2a6d4e2da287016bcae0315f0f006b9df7265aaed72cafdeeecd0c | C/C++ | 28,730 | 1,007 | // utils.h --- Various utility functions
// Copyright (C) 2006-2008 Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the L... |
f2b382236507447f55c0e76197ae2eeae733f2d6f87db33543aecfd2657280fa | C/C++ | 28,730 | 845 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2010 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License version 3 as published b... |
f79652535d20d4c5245584d8981a2e14a1a4eb9709be958db00a11739e6bae21 | C/C++ | 28,766 | 858 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
017257d6715d2d40828e975934c312b7c6db6be54ba104479ddde6ad2ce580d8 | C/C++ | 28,825 | 663 | /*!
@file
@brief CereStim 96 API Primary Header File
The Main Header file for the CereStim 96 API. User code will need to include this file.
The file Declares all Structures, Enums, macros, class, and functions that the user will
need in order to interface with Blackrock Microsystems CereStim 96
@aut... |
ef1bce2260676df412244f928529cb510892dc555c372d811592e63d3be90d83 | C/C++ | 28,848 | 748 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2006-2009 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License version 3 as published by t... |
56dcfb0c10ff972898b62a1edf0c5f2c3e6144b9baeb437a8536ae57bab212d3 | C/C++ | 28,913 | 753 |
class BuildMexArrays : public BuildMexArraysBaseClass
{
public:
int PopulateArrays( int Offset = 0, int MaxRec = 0 );
~BuildMexArrays();
int NofFSAMPLE;
mxArray * mxFSAMPLE;
int NofFEVENT;
mxArray * mxFEVENT;
int NofIOEVENT;
mxArray * mxIOEVENT;
int NofRECORDINGS;
mxArray * mxRECORDINGS;
/*********************... |
9acab925fd2356a613dd67ed5586899949246178e1e9d500cd88db1eac2de07c | C/C++ | 28,964 | 756 |
char * build_version = "3.1 Win32 Dec 8 2009";
class BuildMexArrays : public BuildMexArraysBaseClass
{
public:
int PopulateArrays( int Offset = 0, int MaxRec = 0 );
~BuildMexArrays();
int NofFSAMPLE;
mxArray * mxFSAMPLE;
int NofFEVENT;
mxArray * mxFEVENT;
int NofIOEVENT;
mxArray * mxIOEVENT;
int NofRECORDING... |
162569d6fe9edcbeda3f6d0d6f38aeed6d2a7342b9c7c87dbe8264bae885eeaa | C/C++ | 29,147 | 782 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
cb21cf24f8726b756cfcc6caa7f675c5f05a14a03424ca38d56305c3d71d431d | C/C++ | 29,388 | 1,089 | /***************************************************************************************************
* Copyright (c) 2020, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions are met... |
5bb59bb90ea48f9961d7f04c4d363ecb9fc810428d8c4541870c17577bce2070 | C/C++ | 29,444 | 817 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
688be955e2d6309f8f7af9c563c0da2c4e45462fff4bb04617eaa1a407b5b3ba | C/C++ | 29,570 | 828 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistr... |
60c986fbde08d9c0a0bb77886b3a9f11b28ec6798c893e9584a9e45639e43ca9 | C/C++ | 29,659 | 843 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
306a1067d184ae7ebfadf4b69cfb73571ef06a7e4d203d5c511db7a205af1d3e | C/C++ | 29,696 | 1,005 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
da7a680f55cdf48603b2f9ebd70579ac64fac066924ee7837dd5a0eb728584da | C/C++ | 29,905 | 813 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
a7dce6e724b03726a3914f159ffb1c3f8edf97b8ce2edf4be6cd5cb41eec5029 | C/C++ | 30,045 | 786 | // discrete.h --- Discrete node
// Copyright (C) 2006-2008 Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, o... |
db1a93b3101d150247280684fbaa259cd07b956b00a11af42d5e7948d3475cda | C/C++ | 30,115 | 606 | #ifndef LIBBIGWIG_H
#define LIBBIGWIG_H
#include "bigWigIO.h"
#include "bwValues.h"
#include <inttypes.h>
#include <zlib.h>
#ifdef __cplusplus
extern "C" {
#endif
/*! \mainpage libBigWig
*
* \section Introduction
*
* libBigWig is a C library for parsing local/remote bigWig and bigBed files. This is similar to Ke... |
f69046749c1d44951c00a7690854d8a465894fda96825baec3d07606c1dcecb6 | C/C++ | 30,115 | 1,016 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
700ffb0a468b5fea7776a0fbcb1c477015c456553cd0ee6dd0103e96d47fd1ce | C/C++ | 30,146 | 661 | // tinkerParameters.h --- Tinker parameter reader base class
// Copyright (C) 2009-2011 Kristoffer Enøe Johansson, Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free... |
d30331b7f64470616e947ea661f429765532fb7201626ca4ca8a99490644f557 | C/C++ | 30,202 | 675 | // observable_collection.h --- Collection of observables. Similar to an energy, but with observables instead of energy terms.
// Copyright (C) 2008-2011 Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Publ... |
59c4351e95b197f2ea02aa7ba45d27ccbb4006c2dcafecf1a2e39f841e4d9778 | C/C++ | 30,373 | 1,133 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
5d9606f3fc22d9010e253a0fef517bb6ae1088b6f31021132ad1a6ec4149f5c7 | C/C++ | 30,373 | 832 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008 Benoit Jacob <jacob.benoit.1@gmail.com>
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the... |
9d6c978db0da85da766ce40ae1cfb99b494b2c695f547cc67e9f97e0b112d6f1 | C/C++ | 30,404 | 755 | // chain.h --- protein chain base class
// Copyright (C) 2006-2008 Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the Li... |
ae95d0f2b6a65b278d7477d6aae00556ab36ab83f751769637610becc73b31e7 | C/C++ | 30,496 | 787 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
2b09175e6c6b19564e0e1c2bc4f05eb7e687e0836a01446df42f1537d167b300 | C/C++ | 30,519 | 686 | // contact_map.h
// Copyright (C) 2010 Mikael Borg
//
// This file is part of Phaistos
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your opt... |
f00aeaa5091d84b4b5b072f410ae34808f184d2d51a2c242c8282e93efedd8f3 | C/C++ | 30,591 | 1,038 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
8bee0df5443bb614e12b0788d67768d50b2bf72a408bcfe5f154f078ad9fbab4 | C/C++ | 30,614 | 700 | // This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License version 3 as published b... |
92593634978a27fd240dba66bfd6238ee32effff0c577df05d161fcad36063b4 | C/C++ | 30,627 | 903 | // node.h --- Base classes for node objects
// Copyright (C) 2006-2008 Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of th... |
93d4b25ca6ee57f604e9cb5530d5db23b1525c11294f8fea00032f7ae81ba9e6 | C/C++ | 30,720 | 687 | // profasi_hydrophobicity.h --- PROFASI side chain hydrophobic attraction energy term
// Copyright (C) 2010 Pengfei Tian, Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// t... |
3e6e3a17ea8438f8a8d96e1ac61348f08174dd4b8c7a111ea1e546cdee7086cc | C/C++ | 30,763 | 782 | // residue.h --- residue class
// Copyright (C) 2006-2008 Wouter Boomsma
//
// This file is part of Phaistos
//
// Phaistos is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 3 of the License, or... |
aa7d803c4ce7afe71d412f944e6ec27a6f0cac69efdf38c25509dba45f6f0b28 | C/C++ | 31,066 | 848 | /*----------------------------------------------------------------------------*/
/* CP2K: A general program to perform molecular dynamics simulations */
/* Copyright 2000-2022 CP2K developers group <https://cp2k.org> */
/* ... |
d87362ea6178aa2a099294014efa4e9be29b30269570985611f754e3631641d0 | C/C++ | 31,110 | 1,221 | /***************************************************************************************************
* Copyright (c) 2017-2021, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without modification, are permitted
* provided that the following conditions ar... |
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