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import { GeneResponse } from "./types"; export const SNP_AUTOCOMPLETE_QUERY = ` query suggestions($assembly: String!, $snpid: String!) { snpAutocompleteQuery(assembly: $assembly, snpid: $snpid) { id coordinates { chromosome start end } ...
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import { CCREResponse, GeneResponse, ICREResponse, Result, ResultType, SnpResponse, StudyResponse, } from "./types"; /** * Get the coordinates from a string input. * @param input - The input string to search for coordinates * @param assembly - The assembly to search for coordinates * @returns An arra...
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import { RefObject } from "react"; /** * Smooths the input data with a normal kernel density estimator. * @param input: the input vector to smooth. * @param sampleDomain: the domain over which to smooth; defaults to the domain of the input data. * @param bandWidth: the standard deviation of the kernel; defaults to...
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import { TrackList } from "../types"; // Note: PsychENCODE neuron/non-neuron FANS-sorted ATAC-seq (healthy donors) has NEUN+ and NEUN- variants // url = gs://gcp.wenglab.org/GTEx-psychscreen/tracks/data/DLPFC-{NEUN}-healthy-ATAC.bigWig // title = "DLPFC healthy ATAC-seq {NEUN} " // output = { title: "DLPFC healthy ATA...
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export const tissueColors = new Map(); tissueColors.set("Adipose Tissue", "rgb(242, 104, 34)"); tissueColors.set("Adipose - Subcutaneous", "rgb(242, 104, 34)"); tissueColors.set("Adipose - Visceral (Omentum)", "rgb(251, 169, 26)"); tissueColors.set("Adrenal Gland", "rgb(94, 186, 71)"); tissueColors.set("Artery - Aorta...
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import { call, put, putResolve, delay, select, takeEvery, takeLatest } from 'redux-saga/effects' import { createAction, PayloadAction } from '@reduxjs/toolkit' import { actions, initialState } from './actions' import * as api from '../api' import { annotation_id_t } from '../annotations/model' import { selectors } f...
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/** * Disease- and trait-related constants for the disease/trait portal. */ export const DISEASE_CARDS = [ { aliases: ["ADHD"], val: "ADHD", cardLabel: "Attention Deficit Hyperactive Disorder", cardDesc: "Demontis… Børglum (2023) Nat. Genet.", link: "https://doi.org/10.1038/s41588-022-01285-8",...
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/** * Disease- and trait-related constants for the disease/trait portal. */ export const diseaseCT = { ASD: [ { val: "Astro", cardLabel: "Astrocytes", cardDesc: "" }, //{ val: "Chandelier", cardLabel: "Chandelier", cardDesc: "" }, { val: "Endo", cardLabel: "Endothelial cells", cardDesc: "" }, { ...