sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
ff007179ab8e1767e88908ce3b4419d8bcbab1e091f740af71e138b508087187 | MATLAB | 15,452 | 452 | %% Figure 3e & f (left panel)
% this script rungs additional analysis required for the plots of figure
% 3e & 3f.
%%
clear
ft_defaults
%% - SUBJECTS - %%
% ID 18 missing because of LP at 50Hz
subjects = {'OSL13', 'OSL14', 'OSL17', 'OSL21', 'OSL24', 'OSL26', 'OSL27', 'OSL28', ...
'OSL29', 'OSL30', 'OSL31', 'OSL3... |
611bb065ed2ac0963e8b866d8f3ef54e9b8dc28c972c0c7ab238d310c6c5b2e1 | MATLAB | 15,457 | 410 | %% Manually scoring the participants trajectory
% In order to the model to fit the data the participant had to demonstrate
% a clear intention of completing the triangle.
% This did not happen all of the time and therefore we had to exclude some
% data. Also we noticed by looking at the tracking data that participants
... |
82f9c40a6c3b32b79722d0d6ef7f35eb49c69bd68f3409395a9784773cfaf062 | MATLAB | 15,473 | 292 | % cfs2mat
% =======
%
% Script for translating CED CFS files into Matlab files
%
% Written by William Collins, May 2021
% Derived from a script written by Gilad Jacobson, May 2016
%
% Prerequisites: Install the matcfs64c library developed by J.G. Colebatch
% from the CED website. Extract the contents of the ZIP file in... |
dcace10e4b3928ab1d093f78ace20b4a867c7ebf137ff471e1db931314085050 | MATLAB | 15,492 | 494 | % timtopo() - plot all channels of a data epoch on the same axis
% and map its scalp map(s) at selected latencies.
% Usage:
% >> timtopo(data, chan_locs);
% >> timtopo(data, chan_locs, 'key', 'val', ...);
% Inputs:
% data = (channels,frames) single-epoch data matrix
% chan_locs = channel loc... |
6776489c14af1ace08b6ad31057502cba860f35747c005226ed43c7b7431ab31 | MATLAB | 15,507 | 432 | %% ============================================================
% FINAL COMPLETE CODE - fNIRS LOSO
% - Proper baseline correction using Rest periods as reference
% - Uniform prior
% - Metrics: Accuracy + Precision, Recall, F1-weighted, F1-macro
% - Classifiers: LDA | SVM (C=0.5) | KNN (Grid 1-27) | QDA (diagQuadra... |
d18a42e4297d9316bef237a5f7193b999c0d578204f11c119a7b2602f7405089 | MATLAB | 15,520 | 430 | %% Analysis for each cycle of the oscillation separately - Phase
clear all
close all
dpath='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
plot_all=1;
[big_table, waves] = get_big_table();
%Params
pixel_size_new=1.18185;
pixel_size_old=1.78211;
N_sh=1000;
count_s=0;
% data=load('C:\Users\xscogno\MATLAB\Flavio2\... |
cf8d437f4df8cbbee20849ad2ad159539a34cf0d0050815b133aa91729507663 | MATLAB | 15,552 | 559 | function ob = Gwave1( varargin )
%|function ob = Gwave1([args])
%| Construct Gwave object that computes wavelet decomposition of a
%| signal with dimensions [(Nd)]. This is useful for compressed sensing
%| imaging. (1D or 2D wavelets only)
%|
%| options:
%| 'mask' logical [(Nd)] image-domain mask, usually: true(nx,... |
3314feab18e6c42cc4769598ac13a542310c66a4e19ba1f73ecbb0b044393a3d | MATLAB | 15,586 | 328 | %BinFirRate.m
% This function creates binned firing rate and x, y, v of all cells from one session as BinFirRate.mat.
% Parameters are start time, duration, bin size (in seconds)
% It also include position of the animal.
% Feb14, 2024, It can now combine two segments (e.g. 15 sec around delay start and 10 sec of ... |
b3e0dbdfe95b51c5b529a9c6d824ea9672519a7ed8d1c65a734e53e1fa85ec9d | MATLAB | 15,606 | 281 | % Plot correlation across laps at a population level
% Marta Huelin
% Compare 4 last laps of second exposure (actually, lap 13 to 16) to each lap of first exposure
% INPUT:
% 'parameter' is a string and defines the information you are analysing and that is a field in singleCell_LAPScorr structure.
... |
163cc26306abc8cabcb746dcbdc7f172dfacc364b04ce0079c73ddf939696d54 | MATLAB | 15,621 | 430 |
%% ALL OF THE FUNCTIONS CALLED BY THIS SCRIPT FALL UNDER THE SAME COPYRIGHT INTRODUCED BELOW
%Copyright (c)
% Dr. Mimi Phan, Dr. David Vicario, Basilio Furest Cataldo
% Rutgers University
% Department of Psychology
% 11-1-2023
%tested and used in MatLab v2015b
%%
%rate is really 6:25 not 5:24 as p... |
207fa8dcb0b9914dd00dc3707b9e9242b85f28e25ef9550e38b5f16ae01b9e7b | MATLAB | 15,634 | 296 | %% Debug test
%% User inputs
clc
clear
%/mnt/irisgpfs/projects/lcsb_hcs/Advanced/IsabelRosety/GBAOrganoids
delete(gcp('nocreate'))
myCluster = parcluster('local');
AvailableWorkers = myCluster.NumWorkers;
if AvailableWorkers >= 7
pool = parpool(7)
else
pool = parpool(1)
end
addpath(genpath('/work/projects/lcsb_... |
5119b225662c486fd3c71991eeae421c7f5fe5076724a8e5be16c7243a36bbbf | MATLAB | 15,634 | 297 | %% Debug test
%% User inputs
clc
clear
%/mnt/irisgpfs/projects/lcsb_hcs/Advanced/IsabelRosety/GBAOrganoids
delete(gcp('nocreate'))
myCluster = parcluster('local');
AvailableWorkers = myCluster.NumWorkers;
if AvailableWorkers >= 7
pool = parpool(7)
else
pool = parpool(1)
end
addpath(genpath('/work/projects/lcsb_... |
3c1dafa248bf75846c73f4b45d80ab86d58408b412baa45dd4d57b1e8ac69863 | MATLAB | 15,660 | 296 | function Results = PerformGroupFit(GroupData, config)
%% PerformGroupFit
% Andrea Castegnaro, UCL, uceeaca@ucl.ac.uk
% Zilong Ji, UCL, zilong.ji@ucl.ac.uk
% Fit parameters for a single group. Calculates behavioural results.
% GroupData is the data obtained at the end of the pre-processing stage.
% ====================... |
836472dbd68f7f7e558e706b95152597e87c0e1e24ea0800f8f8c30e9a9ccd73 | MATLAB | 15,661 | 514 | function CWTStruct = cwtft(SIG,varargin)
% CWTFT Continuous wavelet transform using FFT.
% CWTSTRUCT = CWTFT(SIG) computes the continuous wavelet
% transform of the signal SIG using a Fourier transform
% based algorithm.
% SIG can be a vector, a structure or a cell array.
% If SIG is a vector, it contains... |
1ad0fd95c5604c1a67e8680c72526fadc176afce769143ebd80a78447f4c9e01 | MATLAB | 15,677 | 581 | function [age, kWT, kB2KO, kWTJK, kB2KOJK] = fitSegregationData(obj,scaleDist,visibleFlag)
if(~exist('scaleDist') | isempty(scaleDist))
scaleDist = false;
end
if(~exist('visibleFlag'))
visibleFlag = 'on';
else
if(visibleFlag)
visibleFlag = 'on';
else
visibleFlag = 'off';
end
... |
347c0d4e6d77f871ea013569705c6e3ef7517dd9ee39344be64be02648da4343 | MATLAB | 15,695 | 333 | %% Thomas_Yang_et al, 2023 @Nuo Li lab
%% Fig. 4a norm. FR, SC photoinhibition, SC record
clear all
close all
addpath('../func')
load Figure_4_a_data
sig_selective_p(isnan(sig_selective_p))=1;
sig_selective = (sig_selective_p<0.01); %<------------- user defined
sig_selective(isnan(sig_selective))=... |
69a99ce5d372adabbf40c588e5cba5d6a46a4f6745a0b3c0f344516fc3e291aa | MATLAB | 15,708 | 384 | %aim to calculate the latency of the response, find the time and CI, and
%the bootstrap
% close all;
clearvars;
addpath ('/data/local/u0114568/ephysio/test');
listname={'sp_color', 'con-vs-att', 'allSP', 'Att-Inte', 'Att-Congruency', ...
'cueRight', 'allCon', 'all', 'allIncon', 'targetLeft',... |
f897db650c5dafd7980bf5ac5641866106119888e864f81d22b203cb045d0016 | MATLAB | 15,735 | 483 | %clear all
phase_regions_list = {'CING'}
power_regions_list = {'HC'}
% cortex w/ MTL
if strcmp('OFC', phase_regions_list) | strcmp('FRO', phase_regions_list) | strcmp('TEMP', phase_regions_list) && strcmp('MTL', power_regions_list)
group = {'39' '57' '66' '44' '63' '84'}
elseif strcmp('CING', phase_reg... |
fa2c46de4f25c2baf6be4db420ca340859a4e5f6c9bb7a45dd4824da8f649a76 | MATLAB | 15,785 | 515 | %% Figure S9
%%
clear
ft_defaults
%% Subjects
% ID 18 missing because of LP at 50Hz
subjects = {'OSL13', 'OSL14', 'OSL17', 'OSL21', 'OSL24', 'OSL26', 'OSL27', 'OSL28', ...
'OSL29', 'OSL30', 'OSL31', 'OSL32', 'OSL34', 'OSL35', 'OSL36', 'OSL38', 'OSL39', 'OSL40'};
%% Paths
path_data = '/Volumes/IMPECOG/iEEG_Dat... |
dc4a2c19b2b90ea6057b3aec72ec9abea0b15e95ea5967bb8796869b135bfcdb | MATLAB | 15,786 | 425 | %Z-score delay all cells
close all;
clear;
load('U:\rg-yoshida\Yoshida_lab_shared_folder\Shared Data\Antonio\In vivo data\Babak\preliminary analysis\Space_bin\Space_bin_filt30Kalman.mat')
load('U:\rg-yoshida\Yoshida_lab_shared_folder\Shared Data\Antonio\In vivo data\Babak\preliminary analysis\Space_bin\Spatial_... |
0deac2fdb648cc45bd1d109abf64bac76babca7b3b4ba0b97ac1d34515d472e9 | MATLAB | 15,788 | 479 | % Fig6g
% Extended data Fig 10q
% Extended data Fig. 10r
% Extended data Fig. 12f
%%
clear all
close all
dbeh_path='C:\Users\xscogno\MATLAB\Flavio2\Waves\Tracking data\';
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_spikes='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_sort... |
eb01f7419a06702ca5bda1bf176bbdb8a873d2d0380d2dbb3fc06f423e893b1a | MATLAB | 15,811 | 361 | function last_lap_POST1_replay_analysis
% Code for quntifying replay decoded using place cell template from the
% single final lap
% Marta Huelin Gorriz and Masahiro Takigawa 2023
sessions = data_folders_excl;
% Decoding replay events based on finial lap place cell template from RUN1
% Track 1 and Track 2
for nfold... |
393f54bd26deb332925881d6498d39850f4b5bdd0ffbffcd497cd5c15c1d0fc5 | MATLAB | 15,816 | 383 | function rtInfoServerTest(varargin)
%RTINFOSERVERTEST runs connection, setting, and receiving tests for the
% RtInfoServer in murfi.
%
% NOTE: currently you have to start murfi (with the rtInfoServerTest.xml
% conf file) as well as the example_data/scripts/servedata.sh image server
% before running this test.
... |
bda2a3c3638eb9c5395907ead53d9f3a1e96493df3a1d4fe27f9c2a626aef7ca | MATLAB | 15,864 | 422 | function [DCM] = spm_dcm_estimate(P)
% Estimates parameters of a DCM (bilinear or nonlinear) for fMRI data
% FORMAT [DCM] = spm_dcm_estimate(DCM)
% DCM - DCM structure or its filename
%
% Expects
%--------------------------------------------------------------------------
% DCM.a % switch ... |
b941bcfa991517ae135e2a06019b32cf36158cef2e041b727cd09f61267560ee | MATLAB | 15,874 | 498 | %% Figure S5 a & b
%%
clear
ft_defaults
%% Subjects
% ID 18 missing because of LP at 50Hz
subjects = {'OSL13', 'OSL14', 'OSL17', 'OSL21', 'OSL24', 'OSL26', 'OSL27', 'OSL28', ...
'OSL29', 'OSL30', 'OSL31', 'OSL32', 'OSL34', 'OSL35', 'OSL36', 'OSL38', 'OSL39', 'OSL40'};
%% Paths
path_data = '/Volumes/IMPECOG/iE... |
a5ea16d03bb8b0cc94907edf23f5a0e32393960273df36740e0875c2a26166d2 | MATLAB | 15,893 | 572 | function ob = Gtomo_nufft_newsample(mask, dim_data, varargin)
%function ob = Gtomo_nufft_newsample(mask, dim_data, options)
%
% Construct Gtomo_nufft object, for Fourier-based forward and backprojection.
% Currently handles 2D parallel and fan-beam cases.
%
% See Gtomo_nufft_test.m for example usage.
%
% Basically, yo... |
b6b9281a2f8ecfb7779da55bd00304f0667ccad199147c63652325d569d9ae3d | MATLAB | 15,916 | 327 | function fig2(animal, varargin)
ip = inputParser();
ip.addParameter('num_sv', 30)
ip.addParameter('time_pre_stim', .3)
ip.addParameter('time_per_trial', 3)
ip.addParameter('dt', 1/60)
ip.addParameter('include_eye', 0)
ip.parse(varargin{:});
include_eye = ip.Results.include_eye;
num_sv = ip.Results.num_sv;
dt = ip.Res... |
190432c16cfc9b967301bd62c83cee6a457d0c6e6ac357b9bf0ab529cbd4676b | MATLAB | 15,928 | 458 | %% Computes waveness using the probability and asking for it to be larger than 3 ensembles
clear all
close all
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
save_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
clust... |
320e09b1a94119d97c7bef63cdccfa347e515f9407fd39baf1b6fa958dbc4060 | MATLAB | 15,953 | 329 | function mcmc = initMarkovChainMonteCarlo(maxETAPerMCMCRun,maxMCMCIterations,maxMCMCRuns, maxMCMCRunsWithMaxETA, MCMCTheta0Policy, bayesianEstimator,preFilterData, saveChains, adaptiveSCMH,data,environment,model)
% function initMarkovChainMonteCarlo(maxETAPerMCMCRun,maxMCMCIterations,maxMCMCRuns, maxMCMCRunsWithMaxET... |
fd04c49888dc7a5ac9c031d44f799496d768f826827815cefc09e8d110ad2adb | MATLAB | 15,955 | 524 | function ss=FscatJit2(identifiers, data, varargin)
% Plots data as both jittered points and an error bar, in the
% order the identifiers are passed to it. It preserves whatever order
% was in the fbmm structure. Also includes the option to define the circle
% size or use a default. Also allows someone to add bars to ... |
ef44602a5a6b36c8d3a1f299ba568feab85eb2d56276cce5b28c4a625f6bb5dd | MATLAB | 15,962 | 421 | function SBJ08g_HFA_crRT_mLME(SBJs, proc_id, an_id, model_id, stat_id, atlas_id, roi_id, lme_formula)
%% function SBJ08a_crRT_mGLM(SBJ,an_id,stat_id)
% Run GLM with sliding windows for given time-frequency analysis
% Correlation with RT and regression of RT as confound supported
% Model based on log fit to behavi... |
095b0ffd14e180f67241fe7b8381f623f172f6a81c18da4d225ef8b31cee24a1 | MATLAB | 16,001 | 604 | function st = ct_geom(type, varargin)
%|function st = ct_geom(type, varargin)
%|
%| Create the "CT geometry" structure that describes the sampling
%| characteristics of a cone-beam CT system (axial or helical).
%| (Use sino_geom() for 2D fan-beam or parallel-beam systems.)
%|
%| in
%| type 'fan' (multi-slice fan-beam... |
fd8bec54c87f01bd3bcc2490cab23808d8400046f323a3f4c3e63751fe5fe1d3 | MATLAB | 16,048 | 341 | function SBJ11e_HFA_conn_plot_grp_mLME_confusion(proc_id, an_id, model_id, conn_id, swap_Xcorr, stat_id)
if exist('/home/knight/hoycw/','dir'); root_dir='/home/knight/hoycw/';ft_dir=[root_dir 'Apps/fieldtrip/'];
else root_dir='/Volumes/hoycw_clust/'; ft_dir='/Users/colinhoy/Code/Apps/fieldtrip/';end
addpath([root_dir ... |
b7adc325407c0f531ec83514ed3dc98d6c54067bbb1a6677bb173bf7a28831ce | MATLAB | 16,054 | 280 | function SUMMARY_STRUCT = NewFeaturesPostProcessing_082421( bg_struct, SUMMARY_STRUCT )
%NewFeaturesPostProcessing_080421.m This function takes in an existing
%bg_struct and SUMMARY_STRUCT and derives several new features. It also
%inserts consensus NaNs to all fields to ensure missing data is the same
%across fields.
... |
bdc3d99cf4888d7c2770efe1a0aa36f4af5727164aabffd8379380e870d8ed14 | MATLAB | 16,063 | 487 | function bma = spm_dcm_bma(post,post_indx,subj,Nsamp,oddsr)
% Model-independent samples from DCM posterior
% FORMAT BMA = spm_dcm_bma(DCM)
% FORMAT bma = spm_dcm_bma(post,post_indx,subj,Nsamp,oddsr)
%
% DCM - {subjects x models} cell array of DCMs over which to average
% ----------------------------------------------... |
071da3725c38ca5197d05222eaee06c26e54d4e2904ca7dbe50d0d5513a55701 | MATLAB | 16,073 | 483 | %% Figure 1c
% this script rungs additional analysis required for the plots of figure 1c
%%
clear
close all;
%% Set path
path_main = '/Volumes/IMPECOG/iEEG_Data_JW/SingleSubjects/';
cd(path_main);
path_out = '/Users/Janweber 1/Desktop/PhD_HelfrichLab/Project_1_Predictions_ECoG/Results/Figures/submission_natcomm_v... |
81364f113c1374397fea08d2fa824baa24985e2d507259d171031d5f467d56cf | MATLAB | 16,082 | 341 | function SBJ11e_HFA_conn_plot_grp_mLME_confusion(proc_id, an_id, model_id, conn_id, swap_Xcorr, stat_id)
if exist('/home/knight/hoycw/','dir'); root_dir='/home/knight/hoycw/';ft_dir=[root_dir 'Apps/fieldtrip/'];
else root_dir='/Volumes/hoycw_clust/'; ft_dir='/Users/colinhoy/Code/Apps/fieldtrip/';end
addpath([root_dir ... |
e5d0be5590b691ce9e3285233f2407a5dd541865ccbbc7f373faf0991708bb09 | MATLAB | 16,088 | 364 | function [s,keyNdx] = calcKinematicsCond_new(self,condNdx,key,thresh,ndxOnly,timeInterval)
% calcKinematicsCond_new divides each state instances into cell arrays
% based on firing rate regime. Key descriptors of each state such as
% kinematics, index, prior firing rate info, and turn optimality are
% outputed in... |
fa355775fe152a7f217a37d7ccf2b2c5c31b042c65a027bdc1c81db6d95f69b2 | MATLAB | 16,107 | 349 | % function MAP_fig_1_multi(mname,config)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% ################################################################# %% DESCRIPTION
% Script to analyse data for:
% Grieves et al. (2020)
% Quantification of firing rate map procedures
%
% This script
% NO... |
bbecf270204b57e79215ba73554d2f817dafac0ee36672de294fdd18d9744f80 | MATLAB | 16,168 | 594 | function [phantom, params] = ellipsoid_im(ig, params, varargin)
%function [phantom, params] = ellipsoid_im(ig, params, varargin)
%|
%| Generate ellipsoids phantom image from parameters:
%| in
%| ig image_geom()
%| params [ne 9] ellipsoid parameters. if empty, use 3d shepp-logan
%| [x_center y_center z_center x_ra... |
4f34f68008827a9daa11df73ae842f0e197aecada6163d056bbbe90112441d79 | MATLAB | 16,199 | 300 | function figSI(varargin)
ip = inputParser();
ip.addParameter('include_eye', 0)
ip.parse(varargin{:});
include_eye = ip.Results.include_eye;
% define directories
results_dir = '../data/results';
no_eye = load(sprintf('%s/harvested_vars.mat', results_dir));
with_eye = load(sprintf('%s/harvested_vars_withEye.mat', res... |
fba7a27c8c1c680b5c3df4b62ca1e6077756f1fd63e39db173d68e8d7897d29c | MATLAB | 16,213 | 252 | function cfg = tbx_cfg_longitudinal
% MATLABBATCH Configuration file for toolbox 'Longitudinal'
%__________________________________________________________________________
% Copyright (C) 2012-2019 Wellcome Trust Centre for Neuroimaging
% John Ashburner
% $Id: tbx_cfg_longitudinal.m 7563 2019-04-01 10:39:24Z guillaume... |
357a55c9a25c7d72879cc66d375d4a7be5ce30a99e479218803e11ddd43efe54 | MATLAB | 16,221 | 559 | %% Fitting sine to ensemble activity - All sessions
clear all
close all
dbeh_path='C:\Users\xscogno\MATLAB\Flavio2\Waves\Tracking data\';
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_spikes='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_sorting='C:\Users\xscogno\MATLAB\Fla... |
2b9417d7da1968ae7d4a17c7e89b6a82642688fa084dec2aa2c6187562a03a78 | MATLAB | 16,226 | 353 | % function MAP_fig_1_multi(mname,config)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% ################################################################# %% DESCRIPTION
% Script to analyse data for:
% Grieves et al. (2020)
% Quantification of firing rate map procedures
%
% This script
% NO... |
ddebea16ac99ee5353ba2676bf6c9ac4c0e0390ac17b31c15dae19e9a8f8e026 | MATLAB | 16,228 | 392 | function [spikes, thresholds, STDthresholds] = autothreshold(signal,smplfreq,varargin)
%
% Function to detect neuronal action potentials in extracellular neuronal
% field potential measurement data. The function analyses the histogram of
% the input data, and sets detection amplitude tresholds automatically.
% Neg... |
d6e6c0ec97673de0f66e13a2bcdcc74b45f1ef3b8c90b79418881523032cd30a | MATLAB | 16,247 | 480 | classdef BasicMap < Map
% This wrapper around MATLAB internal map is meant for polymorphic
% function signature compatability with other classdef and Java class in
% CytoGenie AutoGate
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Math Lead & Secondary Developer: Connor Meeha... |
53ccb41a615925dd43d7d5b625d05411c58b392004723d7075c1bffc6cd8579c | MATLAB | 16,258 | 454 | %clear all; close all; clc
subj = '39'
% load data
cd ( ['/media/SSanDra/Pattern_Separation/subj_' subj ])
% load(['behavior_subj' subj '.mat'])
% load(['trial_data_subj_onset_' subj '_select_chan_1.mat'])
% load(['baseline_info_wavelet_32num_20logdb_3hz_350hz_notched_artifact_reject_subj_' subj '_select_chan_1.mat'])... |
2254559202ce7d271e53eeff14f060010fbf041dc3d78fa4ef9d4d95810458e2 | MATLAB | 16,272 | 340 | %% Thomas_Yang_et al, 2023 @Nuo Li lab
%% Fig. 5a norm. FR, SC photoactivation, SC record
clear all
close all
addpath('../func')
load Figure_5_a_data
% cell_location = func_get_SC_core_shell(Unit_CCF(:,2), Unit_CCF(:,3), Unit_CCF(:,1));
% %% plot the selectivity in a user defined region
% i_location... |
fece4d9a545ee73f4b19c998fc298c6eec1af4bee7749a1e6bf40edace86e8d6 | MATLAB | 16,305 | 400 | function IPEMDemoMECRhythmExtraction
% Usage:
% IPEMDemoMECRhythmExtraction
%
% Description:
% Starts the demonstration of the MEC algorithm used for the extraction of
% rhythmic patterns in sound.
%
% Authors:
% Koen Tanghe - 20020912
% ----------------------------------------------------------------... |
bc0e4b714e40f1c7b66989579277218c23cc29bd8daac62bb2c7f7b8519cec53 | MATLAB | 16,309 | 323 | clc;
clear all;
close all;
addpath(genpath('D:\kate_dropbox\Dropbox\Rutgers\Matlab - Rutgers\Firestein Lab\BCT\'));
%parameters
totaltime = 300;
binsize = 10;
maxlag = 20*binsize;
%options
raster = 1;
plotme = 0;
extracalcs = 0;
disp(' ');
theBinSize = binsize;
theMaxLag = maxlag;
%%
params.... |
075fe97d98064be39181fd600dec1367250d315aaf1df5e1d0d7215936d915e7 | MATLAB | 16,328 | 373 | %% Preprocessing Pipeline
% This script should be run in sections. Functions/scripts with the SBJ##
% prefix can be run automatically, and all other sections should be
% manually editted for each dataset.
% Set Up Directories
if exist('/home/knight/hoycw/','dir');root_dir='/home/knight/hoycw/';ft_dir=[root_dir 'Apps/f... |
f1b7d0c82e1193019b38e970d6a6e21f10cd7c677b769d8dd9ecfe214335233d | MATLAB | 16,339 | 604 | function ob = Gcone(cg, ig, varargin)
%function ob = Gcone(cg, ig, [options])
%|
%| Construct Gcone object, for 3D axial cone-beam or helical cone-beam
%| forward and back-projection. Works with flat detectors or 3rd-gen CT arcs.
%| Also supports 3D parallel-beam geometry, but no polar angle.
%|
%| in
%| cg ct_geom o... |
bff243dc632f208e5df641fe498befe6edf80314afbb277f2ef6a325795a9099 | MATLAB | 16,348 | 385 | function [fitFun,pHat,XX,YY,pHatBase,CorrMat1,CorrMat2,qBounds1,qBounds2,...
baselineDat,allDat,allSpk,alldSpk,allTimeFe,allTimeAbs,allFly,allFlyBaseline,...
turnOpt_during,nLL,AIC,BIC,distTypes,maskedDat] = getKNNKin(f_orco, s, keyNdx, xGrid, yGrid, ...
zGrid, ratio, Thresh, K, state, kin, border, genotype... |
abdf62feb23f32d34ec361eac5e7a1040417c5b806ae6b9b6813ed481c769d8d | MATLAB | 16,363 | 404 | % Script to plot Figure 1, calculate statistics reported, and save data to
% Excel spreadsheets that are then imported into the Source Data file.
% Kit Longden 2023.
addpath ../../src/Shared_functions/
% Figure 1 properties
% ------------------------
fig_h1 = figure(1);
set(fig_h1, 'color', 'w','Position',[1500 500 80... |
be3190760e030f64b3678697ba707bde914d2d00868ab835f5f4759800b18d0a | MATLAB | 16,372 | 400 | function [slope,pearson_rho] = findAttractorDynamics(cells,save_figs,sf)
% A functioning attractor network should preserve correlations between
% pairs of cells.
% E.g. So pairs of cells that are well correlated in trial 1 through 25
% should also be well correlated in trials 26 through 50
slope = nan;
pearson_rho = ... |
bd4b8967f5b38bf17e809855a89fef4a8737745851d4b75ee9ed25b9ce44b8ee | MATLAB | 16,380 | 328 | function [TRACKS, POKE_STRUCT] = get_head_pokes_PERMISSIVE( TRACKS, bg_struct, INTS_OUT_BY_TRACK, OUT_INT_TRK_KEY, pixpermm )
%GET_HEAD_POKES3.m This function identifies times that the worm pokes its
%head out of the lawn while the rest of the body remains in the lawn.
%This method looks specifically at peaks in radial... |
74a895c18fadaa6d81ba563d8c490d3725b6cbbb62ce888dfb1e38c1023731e6 | MATLAB | 16,385 | 473 | clear all
close all
clc
addpath('/gpfs0/tals/projects/Analysis/stavbi_goldfish_2021/Matlab/matlab_functions','-end')
%pyenv("ExecutionMode","OutOfProcess"); %run just one time
%% loading the data
load('all_cells_goldfish_data_6_6_2022.mat');
geneid=geneid(:,3);
%% normalization + highly variable genes + scaling and lo... |
c0d73e1565add18a049928694e3e30f57ae2cabcef0b39bf09976a29fde5304f | MATLAB | 16,392 | 452 | function [duV, duVT]=getraw_uv(D, newseTime, varargin);
% getraw_uV - retrieves MC-Rack continuous data as a matrix of uV values
% currOutVar=getraw_uV(D, newseTime)
% <D> must be the name of a datastream object or a
% file of continuous raw data recorded with MCRacks.
% <newseTime> is a 2-element vec... |
78946411f1d0248478241a91050e9ad90dd28f8ce88dba92d0d7f983a9cc17df | MATLAB | 16,398 | 532 | function varargout=notBoxPlot_adapted(y,x, varargin)
% notBoxPlot - Doesn't plot box plots!
% Adapted from Rob Campbell (2023). notBoxPlot (https://github.com/raacampbell/notBoxPlot), GitHub. Retrieved August 1, 2023.
% function notBoxPlot(y,x,'Param1',val1,'Param2',val2,...)
%
%
% Purpose
% An alternative to a box plo... |
87d99c1267fbd04976ff7cb7c2620b2b6b00e9c42ae2aaaac5f94867d13bf3ed | MATLAB | 16,413 | 454 | %% Analysis for each cycle of the oscillation separately - Phase
%Computes the MVL in spatial bins
clear all
close all
dpath='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
plot_all=1;
[big_table, waves] = get_big_table();
%Params
pixel_size_new=1.18185;
pixel_size_old=1.78211;
N_sh=1000;
count_s=0;
min_cutoff... |
e2a5707d9b091de51d7beaf73b59f62a17d7ee1eb2fa8e5e08e54c9d0d8e28a2 | MATLAB | 16,417 | 330 | function analysis_05_extract_bursts(study_info, varargin)
% Parse optional arguments
defaults=struct('min_ntrials',5);
params=struct(varargin{:});
for f=fieldnames(defaults)',
if ~isfield(params, f{1})
params.(f{1})=defaults.(f{1});
end
end
addpath('/home/bonaiuto/burst_detection/matlab');
pipeline=... |
0824b7ed0e611ea0c82a35ac8d8cd02e392d7cd2f26175073037d8e9c2c4f428 | MATLAB | 16,478 | 635 | exp_type = 'encoding'
lock = 'onset'
if strcmp('response', lock)
data_length = 1601;
cd(['/mnt/yassamri/iEEG/sandra/groupdata_spectrograms_response_' exp_type])
elseif strcmp('onset', lock)
data_length = 2101;
cd(['/mnt/yassamri/iEEG/sandra/groupdata_spectrograms_onset_' exp_type])
end
minfreq = 3;
maxfreq = 200;... |
e3e3a7b113b20e155117bbccbc3590ac826b10404a1bd2fb784a3765f1036338 | MATLAB | 16,509 | 296 | %% ----------------------------------------- %%
% Note Mar 14 2023:
%
% Current version of code does FOV correction, grid correction &
% MIP/AIP/Retardance/Orientation generation, surface finding & profiling,
% volume stitching
%
% Fitting is in Fitting_after_recon.m
%
%
% Note Jan 28 2020:
%
% Current version of code... |
817a9f988b20b18b913402636c37729fc21f24be8390e39214f4e594bd136716 | MATLAB | 16,570 | 593 | %% Figure 1d
% this script rungs additional analysis required for the plots of figure 1d
%%
clear
ft_defaults
%% - SUBJECTS - %%
% ID 18 missing because of LP at 50Hz
subjects = {'OSL13', 'OSL14', 'OSL17', 'OSL21', 'OSL24', 'OSL26', 'OSL27', 'OSL28', ...
'OSL29', 'OSL30', 'OSL31', 'OSL32', 'OSL34', 'OSL35', 'OS... |
b1f5615729601ff31cb9faf90d30e89c8ce45a20a919544b5dfc955c507e2cc0 | MATLAB | 16,576 | 377 | function [f_orco,time2State,exitTrajectory,timeOfState,kinOfState,biasOfState,dFSmooth,FSmooth] = ...
getDistInhibition(f_orco,crossingtype,plotFig)
%close all;%clear;
if isempty(f_orco)
load('DataModel/Orco Retinal_10Dec202060sAvg_32_25_3.mat', 'f_orco');
end
spd = f_orco.calcSpd;
% calculate smoothed... |
53fac1d5ba51c1e1719d0629f0ba41bef4488ada2436154d826085682e922eda | MATLAB | 16,586 | 1 | function B=inpaint_nans(A,method)
% INPAINT_NANS: in-paints over nans in an array
% usage: B=INPAINT_NANS(A) % default method
% usage: B=INPAINT_NANS(A,method) % specify method used
%
% Solves approximation to one of several pdes to
% interpolate and extrapolate holes in an array
%
% arguments (input):
% A... |
41dec4c117c3b909a6add4432790e5b9a58bf38ba04655c925aa6a2f7d1421c6 | MATLAB | 16,609 | 424 | %aim to calculate the latency of the response, find the time and CI, and
%the bootstrap
% close all;
clearvars;
addpath ('/data/local/u0114568/ephysio/test');
listname={'sp_color', 'con-vs-att', 'allSP', 'Att-Inte', 'Att-Congruency', ...
'cueRight', 'allCon', 'all', 'allIncon', 'targetLeft'... |
54e48af6eea703e84eb91474e2c461c0a3bd77dae60cbfe649f5985e0efa22e4 | MATLAB | 16,625 | 376 | function out = startQuestionnaire(text, ansText, varargin)
% Use this function to present a questionnaire on the stimulus presentation
% window. Every question is shown in a table with the same set of answer
% options on top, and the user answers by clicking into one of the answer
% fields. The questions are presented ... |
ee0d275d10e3b0e1092be2dac6d7e8a977731c4a7f56778610022e89659c1691 | MATLAB | 16,629 | 548 | %% Figure S11
%%
clear
ft_defaults
%% SUBJECTS
% ID 18 missing because of LP at 50Hz
subjects = {'OSL13', 'OSL14', 'OSL17', 'OSL21', 'OSL24', 'OSL26', 'OSL27', 'OSL28', ...
'OSL29', 'OSL30', 'OSL31', 'OSL32', 'OSL34', 'OSL35', 'OSL36', 'OSL38', 'OSL39', 'OSL40'};
path_data = '/Volumes/IMPECOG/iEEG_Data_JW/Key_... |
4bc0f394eb38e39fa409b20d2e24496cd50b1e8c25d01e862b462fca73f9cf38 | MATLAB | 16,636 | 487 | function MS_mod_tSC_main
%MS_MOD_TSC_MAIN Main wrapper for the figures presented in the Király et
%al. manuscript.
% This code is for further analysis after running
% TSC_RUN_SESSION_ANALYSES on the sessions of simultaneous septal unit
% and hippocampal LFP recordings.
% Bálint Király
% Institute of... |
be23eeb73efb74c812a753aabe41a44eee5ee116762ceddc09735a3bdc3c0fe8 | MATLAB | 16,654 | 454 | function [] = PlotAllFiguresEmpSynth(genAll,meta,agentModelMeta)
% set parameters
dur = agentModelMeta.dur;
delay = agentModelMeta.delay;
%plotFolder = [meta.syntheticPlotFold];
plotFolder = char(meta.syntheticPlotFold);
for ii = 1:numel(dur)
for jj = 1:numel(delay)
currDur = dur(ii);
... |
a038da960b245d1a3521ee66e1955d83cdd3eaa0539b3a87c63de289791169c9 | MATLAB | 16,707 | 553 | clear all
close all
dbeh_path='C:\Users\xscogno\MATLAB\Flavio2\Waves\Tracking data\';
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_spikes='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_sorting='C:\Users\xscogno\MATLAB\Flavio2\Waves\Sorting\';
dpath='C:\Users\xscogno\MATLAB\F... |
564c698255242e113c615bc9c733697d719c4ae69cadcfe0e2a9c3194d620a1f | MATLAB | 16,708 | 1 | function B=inpaint_nans(A,method)
% John D'Errico (2022). inpaint_nans (https://www.mathworks.com/matlabcentral/fileexchange/4551-inpaint_nans), MATLAB Central File Exchange. Retrieved March 10, 2022.
% INPAINT_NANS: in-paints over nans in an array
% usage: B=INPAINT_NANS(A) % default method
% usage: B=INPAI... |
e3f42d2a44c67bbdb1c2524a0cd32d3c0c6fd896d849a671581a2e08e17b1801 | MATLAB | 16,724 | 388 | %% Script to analyze the molecular identity of the autocrine connections
% Jan Watteyne - jan.watteyne@kuleuven.be and/or jwatteyne@gmail.com
% 20230607
clear all
close all
workspace
%% Import data
%-------------------------------------------
% import general variables from network build
%----------------... |
c166ea7d998c3c2718e52a9af5789c9aef5ffd02c0af8951af243c1ac045cb33 | MATLAB | 16,735 | 461 | %clear all; close all; clc
subj = '39'
% load data
cd ( ['/media/SSanDra/Pattern_Separation/subj_' subj ])
% load(['behavior_subj' subj '.mat'])
% load(['trial_data_subj_onset_' subj '_select_chan_1.mat'])
% load(['baseline_info_wavelet_32num_20logdb_3hz_350hz_notched_artifact_reject_subj_' subj '_select_chan_1.mat'])... |
b53f82808aec5c67f2a739ebe06ff19efe504d056c7dc10d3d4bb3921dd2c0b9 | MATLAB | 16,742 | 350 | function gap_linking_str = fun_graph_get_linker_ep2ep_th_rlx(vessel_image, vessel_mask, vessel_skl, p_1_pos, p_2_pos, connectivity)
% fun_graph_connect_gap_ep2ep finds the link that connect the two given
% endpoitns
% Input:
% vessel_image: 3D numerical array, image of the vessel
% vessel_mask: 3D logical array, ... |
01a08d9920cc0d48ca9bd4bbf2e9c55a4aad41dfbfaed1198c8b832cbe9a1f46 | MATLAB | 16,754 | 537 | clear all; clc; close all
rmpath(genpath('/mnt/yassamri/iEEG/sandra/analysis_pipeline_final/'))
reset = 1% reset to zero 0=no, 1 = yes
exp_type = 'encoding' %encoding, tuning_correct
smoothgamma = ''
fn_ext = ''%'_cue_responseiveyes'%'_cue_responseiveyes'
removeERP = ''
if strcmp('' ,removeERP)
ba... |
72023357c03f155e368afaa4b907fcfa11ba78a59f92f5134f49773042ba039f | MATLAB | 16,851 | 669 | function st = image_geom(varargin)
%function st = image_geom(varargin)
%|
%| Create a "image geometry" structure that describes the sampling
%| characteristics of a single 2D image (or 3D volume).
%| Using this structure facilitates "object oriented" code.
%|
%| options for 2D
%| 'nx' image dimension
%| 'ny' image d... |
b7253c754fd3a65f94fa589fb7f5d11ed386b164993e2c103dace561db097446 | MATLAB | 16,902 | 586 | function ob = Gtomo_nufft(mask, dim_data, varargin)
%function ob = Gtomo_nufft(mask, dim_data, options)
%
% Construct Gtomo_nufft object, for Fourier-based forward and backprojection.
% Currently handles 2D parallel and fan-beam cases.
%
% See Gtomo_nufft_test.m for example usage.
%
% Basically, you create an object c... |
4d46be983e38afbf00c9031587be2e8c61f6fca9997c52ad1b3537f172fb5cf3 | MATLAB | 16,903 | 329 | % PROPORTION OF LOCAL AND REMOTE AWAKE REPLAY EVENTS IN TRACKS PER PROTOCOL
% MH 2020
% Plots a figure per protocol. Each subplot is a rat. Within subplot, all tracks plotted with bar plot, each bar indicating proportion of replay events
% decoded during that track, for each possible track decoded. Proportion is calcul... |
cb368c00c7f780c8041334faa8be7d55bbb192f64046a9ad2bfd11a40b1e5d99 | MATLAB | 16,950 | 463 | function [stats,t] = mTRFmulticrossval(stim,resp,resp1,resp2,fs,Dir,tmin,tmax,lambda,varargin)
%MTRFMULTICROSSVAL Cross-validation for multisensory model optimization.
% STATS = MTRFMULTICROSSVAL(STIM,RESP,RESP1,RESP2,FS,DIR,TMIN,TMAX,LAMBDA)
% cross validates a forward encoding model (stimulus to neural response)... |
2f998332480ee043f9bc8176610a85d0464d9b3470e87bdae1516bbf174b9787 | MATLAB | 16,958 | 443 | tic
clear all
close all
addpath('/data/matlab_functions/')
% % % % % % % % % % % % % % % % % % % % % % % % % % % %
load all_neurons_cluster_ave.mat %%% 'meangr_mat_all','clusteruni','geneid_all' geneid
gabaclusters = loadCellFile('ClusterOrder_step3_GABA_FC_24-Oct-2021.txt');
glut1clusters = loadCellFile('Clust... |
94009ba3a81f8bc6decb383bfd528dbcfa3627a47c65a0b54091f47685bce2fb | MATLAB | 16,997 | 666 | function st = mri_objects(varargin)
%|function st = mri_objects([options], 'type1', params1, 'type2', params2, ...)
%|
%| Generate strum that describes image-domain objects and Fourier domain spectra
%| of simple structures such as rectangles, disks, superpositions thereof.
%| These functions are useful for simple "i... |
3db30c740510382492a67849c3cbf4b349800df242cc9eb18bc27fddc6a16b0f | MATLAB | 16,998 | 446 | %% run each visium genes
clear all
close all
clc
direct='/bigdata/web_pilot/trial';
cd(direct)
%% load
disp('gf_v')
visdirect='/data/Technion_analysis/goldfish/visium/cropped/091922_two';
load([visdirect,'/Sorted.mat'],'data_orig_all_sorted','sample_sorted','bar_ar_sorted','T_cells_tmp') % vdata
load([visdirect,'/Ori... |
c7f111ee7dc593f9b863c3c069710c1d749741024aca9bccb6205955272cbbbb | MATLAB | 17,005 | 459 | function PlotAllFiguresEmp(genAll,genRetinal,meta)
plotFold = [char(meta.plotFold) '\'];
subFoldName = meta.foldName;
% load in all data (both retinal and controls)
%--------------------------------------------------------------------------
% (for both control and retinal)
f_orcoAll = cell(1,numel(genAll));
... |
d8dd9441315ae2b73e41b2d93c5f28755bd9519b798a9aed645b17320aeb6b8e | MATLAB | 17,014 | 407 | function SBJ08e_HFA_plot_grp_GLM_reg_venn_ROI(SBJ_id, proc_id, stat_regs, hemi, roi_id,...
plot_out, plt_id, save_fig, varargin)
%% Plot venn diagrams of overlap in mass GLM effects per ROI
% COMMENTS NOT ADJSUTED SINCE STROOP COPY
% INPUTS:
% SBJ_id [str] - ID of subject list... |
d56b741bc051acfac19e15cf8c2e6680b1855db2180619da9f25335f692685ca | MATLAB | 17,042 | 749 | function h = im(varargin)
%function h = im([options,] [xx,] [yy,] zz, [scale|clim,] [title])
%| show matrix zz as an image, possibly with (x,y) axes labeled by xx,yy
%|
%| options:
%| subplot an integer for subplot
%| 'notick' no axis tick marks
%| 'black0' make sure image value of 0 is black (max white)
%| 'blue0' ... |
4ccedddbe4a0641b67935a5eb3752f645495b519df8f525066a07b70b19bd904 | MATLAB | 17,053 | 483 | classdef SuhWindow < handle
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Copyright (c) 2022 The Board of Trustees of the Leland Stanford Junior University; Herzenberg Lab
% License: BSD 3 clause
properties(Constant)
TESTING=false;
end
properties(SetAccess=priv... |
933eaafa3fe6c1de3139b35b35a5d5fe2970c4f3c1c03e9123b5da1426bc41b1 | MATLAB | 17,065 | 436 | %% Script that fit different types of the generative linear angular model considering differnt types of error - output is in Fig. 2, Fig S2, Fig S4
% Zilong Ji, UCL, 2022 zilong.ji@ucl.ac.uk
% We calculated different generative angular-linear models with different
% types of source errors to find the candidate for our ... |
c83c88722d68b8a6b8c8aa234d6a7bac631c6d22059fc83d7a13690c08fbfef2 | MATLAB | 17,091 | 350 | function gap_linking_str = fun_graph_get_linker_ep2ep_th_rlx(vessel_image, vessel_mask, vessel_skl, p_1_pos, p_2_pos, connectivity)
% fun_graph_connect_gap_ep2ep finds the link that connect the two given
% endpoitns
% Input:
% vessel_image: 3D numerical array, image of the vessel
% vessel_mask: 3D logical ar... |
5b505b234f631711117b6927d574c8403f034c2456edbb32599babe6c8e83248 | MATLAB | 17,093 | 512 | clear all
close all
dbeh_path='C:\Users\xscogno\MATLAB\Flavio2\Waves\Tracking data\';
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_spikes='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_sorting='C:\Users\xscogno\MATLAB\Flavio2\Waves\Sorting\';
dpath='C:\Users\xscogno\MATLAB\F... |
ad2c33ccac1d36737c30ed904401f3608dadcc2fcccbf03578512b61f2a0de52 | MATLAB | 17,141 | 306 |
function histogram_difference_replay_events(plot_type,epoch)
% Plots the difference of replay events between tracks over time. Tests different types of comparisons, set in the code.
% Histogram is calculated as the difference of replay events between tracks for each experiment (always within a protcol),
%sum the ... |
32659e1e16e1d221c9c0bb857e2e8bcd5c4f158c7f7aa6510d697c843c129be2 | MATLAB | 17,147 | 415 | function [SPM] = spm_fmri_spm_ui(SPM)
% Setting up the general linear model for fMRI time-series
% FORMAT [SPM] = spm_fmri_spm_ui(SPM)
%
% creates SPM with the following fields
%
% xY: [1x1 struct] - data structure
% nscan: [double] - vector of scans per session
% xBF: [1x1 struct] - Basis function st... |
6001f11df3de25cbf7d3357d067b8430cd5c60380370b4a3fac0e5fa7d0ac407 | MATLAB | 17,174 | 312 | function [vessel_graph, record] = fun_graph_refine_by_classifier(vessel_graph, vessel_image, vessel_mask_dt, opt)
%% Initialize parameters
% Record refinement process
if ~isfield(opt, 'record') || ~isfield(opt.record, 'num_self_loop')
record = struct;
[record.num_self_loop, record.num_bilink_loop, record.num_sh... |
78a1ced0a7a12e284d2b9b5ca9f4a09cabb0899ddb84e89d08a5e37498991896 | MATLAB | 17,189 | 261 | function extract_replay_bias(computer,epoch)
% Marta Huelin, 2020
% Plots replay bayesian probability bias between tracks
% Load name of data folders
if strcmp(computer,'GPU')
sessions = data_folders_GPU;
session_names = fieldnames(sessions);
else
sessions = data_folders;
session_names = field... |
bd90b5e78970bda5a7205c0d9255199f4d301ca63c3bb70c1899e704cf643d41 | MATLAB | 17,224 | 564 | function [idxs, cancelled, mainDlg, raIfRemembered, checkBoxes, allChb, sortGui]=...
mnuMultiDlg(args, title, options, defaults, singleOnly, ...
radioOrCheckBox, xtraCmp1, xtraWhere1, xtraCmp2, xtraWhere2, ...
itemsPerScrollWindow, where, subTitle)
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swme... |
05dc6c6c9356de4d35baf151d930a387bfaa963e06f5e2ae611eafde2f56d47c | MATLAB | 17,263 | 282 | %% Run this files to compute the network-human main effect and interactions for all for the VISION experiments
%% Must specify the paths to the required network data mat files.
function run_anova_stats_matlab_compare_human_responses(EXP_NUM, NUM_BOOTSTRAPS)
rng(517)
addpath('../matlab_statistics_functions')
%% NO A... |
c373a813dc2dae739045a22926fc92fdc0ad2d488306631ae122bb7b11f06eb5 | MATLAB | 17,269 | 399 | % This script loads loads the tracked data from the .mat files generated
% with load_excel_file_proboscis_tracks, adds together data from multiple files
% (if multiple trials were recorded for the same animal and condition),
% and rotates the data to align the pattern's main axis with the cardinal coordinates.
... |
3f5172a8e1034d11d535c365dd9e318169a69484bc74cf06d1e121982586be96 | MATLAB | 17,283 | 311 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% ################################################################# %% DESCRIPTION
%FUNCTION short descr.
% long descr.
%
% USAGE:
% [out] = template(in,in2)
%
% INPUT:
% in - input 1
% in2 - input 2
%
% OUTPUT:
% p - o... |
21a9bc6aa4e668c075b928da020a454ac6b14340d85f8a4795711ab92b0d4803 | MATLAB | 17,331 | 371 | function SymphonicBeeSwarm(x, y, Color, PointSize, varargin)
warning('This function is now deprecated, use Swarm instead')
% Produces a distribution of points akin to a beeswarm, violin, or box and whisker
% SymphonicBeeSwarm(x, y, color, point_size, varargin)
% Only supports a single group at a time as thi... |
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