sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
a19c5ce67eb1009624cd19cb57301ed30b1907fd1c707edc956a76240594138f | MATLAB | 28,433 | 1,196 | %% Autocorrelations
clear all
close all
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
save_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
clusters=10;
mice_number=14;
mice=['L08M1';'L08M2';'L08M3';'L08M4';'L09M1';'L... |
66f053ff78a43cf98c32909c14355732a2d2df0dc19829e2adc606ef81003d87 | MATLAB | 28,451 | 946 | function varargout = c_EEG_plotTimtopo(varargin)
persistent pathModified;
if isempty(pathModified)
mfilepath=fileparts(which(mfilename));
addpath(fullfile(mfilepath,'../GUI'));
addpath(fullfile(mfilepath,'../MeshFunctions'));
c_EEG_openEEGLabIfNeeded();
pathModified = true;
end
defaultTraceColors = [0 0 1; 0 1 0;... |
5f0c5de0c0505ab2cc50bd1a520d922936b90f62ec26e7f0f121a997d7efa3a8 | MATLAB | 28,458 | 662 | function [Ireg,O_trans,Spacing,M,B,F] = image_registration(Imoving,Istatic,Options)
% This function image_registration is the most easy way to register two
% 2D or 3D images both affine and nonrigidly.
%
% Features:
% - It can be used with images from different type of scans or modalities.
% - It uses both a rigi... |
812d8a01ce5d91a38d379e5ba876af79db0b0a83277d8932129153ffc3ff3e79 | MATLAB | 28,652 | 668 | function [est, unc, liks, hypers] = TAFKAP_Decode(samples, p)
% This code runs the PRINCE or TAFKAP decoding algorithm. The original
% PRINCE algorithm was first described here:
%
% https://www.nature.com/articles/nn.4150
%
% The new TAFKAP algorithm is described here:
%
% https://www.biorxiv.o... |
96ef36f6b54d818e25a7e3b8806e9a9b0be2d292a457619bd82096b7f4d5115d | MATLAB | 28,702 | 793 | %% Script to create output for Fig. 3 - visualization of the GLAMPI model applied to different groups
% Zilong Ji, UCL, 2022 zilong.ji@ucl.ac.uk
% Andrea Castegnaro, UCL, 2022 uceeaca@ucl.ac.uk
% Visualization include, visualizing mental points over real data.
% Comparison between effect ratio between mental/real leg ... |
70292049fcc8354b32176827e1370f65bbef9812437133dbf5e7189fb267ac90 | MATLAB | 28,743 | 728 | classdef SuhDataSet < handle
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Copyright (c) 2022 The Board of Trustees of the Leland Stanford Junior University; Herzenberg Lab
% License: BSD 3 clause
properties(Constant)
FILE_MATCH='epp_match.mat';
FILE_MATCH_LABE... |
c700600f1e57d4c2b10cc1c3f29bfe536550d422adcfad0c85a49d2eb82406fe | MATLAB | 28,826 | 538 | function mergedata_newFeatures_addFilestoMat_082421()
%mergedata_newFeatures_addFilestoMat_040121.m
% This function loops over _FINAL.mat files in a directory and processes
% them to derive new fields using NewFeaturesPostProcessing_021321.m
% Adds to a pre-existing newFeatures.mat file
[featuresMatFile_filename... |
6fc9a037d06f3a10daa6e230ba1bb42327a968377082367f11386c81328cb488 | MATLAB | 28,932 | 684 | % Test program for GrTheory functions
% Author: Sergii Iglin
% e-mail: siglin@yandex.ru
% personal page: http://iglin.exponenta.ru
clear all
% select test:
% ntest=1 - grBase
% ntest=2 - grCoBase
% ntest=3 - grCoCycleBasis
% ntest=4 - grColEdge
% ntest=5 - grColVer
% ntest=6 - grComp
% ntest=7 - grCycleBasis
% ntest=... |
936690d65b8c232d085c3635abe9746f3d455574d8d3ecbd5094a14726a3c596 | MATLAB | 29,080 | 713 | function varargout = PhysioFCSV_Reg(varargin)
% PHYSIOFCSV_REG MATLAB code for PhysioFCSV_Reg.fig
% PHYSIOFCSV_REG, by itself, creates a new PHYSIOFCSV_REG or raises the existing
% singleton*.
%
% H = PHYSIOFCSV_REG returns the handle to a new PHYSIOFCSV_REG or the handle to
% the existing singleton... |
9bee03f8e5ed63f1695fcdaaa0e15e128a73f264f2ea3886c42c7419e2eb7951 | MATLAB | 29,094 | 692 | function plotAllCells(allCells,paramsPath)
%% Make Plots. Use after running Pool All cells
% Run all the plotting functions
% input: ketamineCells struct
% add plotting functions to path
addpath(genpath('/Users/KeiMasuda/Documents/MATLAB/Add-Ons/Functions/gramm (complete data visualization toolbox, ggplot2_R-like)/co... |
5b3cfb4b2f3ac489a50f83375eb082079649b021e013f8d3ef624c3f9885b7e0 | MATLAB | 29,155 | 753 | %% SCRATCH: code for scRNAseq and visseq
%% construction
% fprintf(2,'Code under-construction, please try again later \nMuhammad \n')
% return;
%% bgn
clear all
close all
warning('off','all')
uuu=cd;
% cd('/data/runs/samples/')
set(0,'DefaultFigureWindowStyle','normal')
%% get parameters
try
transcendentalDoc = '... |
0cfd381814c500c2cad892135926a99a821ae28e86adb1918fed532bdb51ea1b | MATLAB | 29,175 | 581 |
function prot = replay_bias(data_type, state)
% Load replay information
if strcmp(data_type,'main')
path ='X:\BendorLab\Drobo\Lab Members\Marta\Analysis\HIPP\Chapter 2\Raw_replay_analysis';
sessions = data_folders;
session_names = fieldnames(sessions);
elseif strcmp(data_type,'speed')
path = 'X:\Bend... |
cd4deecf220725937f002c0938ff6052da54adcf00ba0f4065ff0f5acda3f9d9 | MATLAB | 29,254 | 807 | % Sort neurons according to angle between PC1 and PC2. Plot rasterplot.
% Cell 1: Data.
% Cell 2: Shuffled data.
% Cell 3: Data and running epochs
% Cell 4: Raster plot for a V1 session
%%
clear all
rec_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_dat... |
e151ed5488966bd5d556419df93a508791fd9855b3d39c5248121ddbb467f41d | MATLAB | 29,317 | 773 | %% Regular wave score
clear all
close all
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
save_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
clusters=10;
mice_number=12;
mice=['L08M1';'L08M2';'L08M3';'L08M4';'L09M1';... |
f3f074a6fa7a5004f01a84a59e4fee2265f2f5690d47403d033d6039c1eb2422 | MATLAB | 29,456 | 693 | function plotAllCells(allCells,paramsPath)
%% Make Plots. Use after running Pool All cells
% Run all the plotting functions
% input: ketamineCells struct
% add plotting functions to path
addpath(genpath('/Users/KeiMasuda/Documents/MATLAB/Add-Ons/Functions/gramm (complete data visualization toolbox, ggplot2_R-like)/co... |
beeafa3e671e797ab378b37d1e9da81d4bc7fdbe091ad0d9fe22cce1c331babd | MATLAB | 29,615 | 684 | % Test program for GrTheory functions
% Author: Sergii Iglin
% e-mail: siglin@yandex.ru
% personal page: http://iglin.exponenta.ru
clear all
% select test:
% ntest=1 - grBase
% ntest=2 - grCoBase
% ntest=3 - grCoCycleBasis
% ntest=4 - grColEdge
% ntest=5 - grColVer
% ntest=6 - grComp
% ntest=7 - grCycle... |
fe9ee4f5aac65e5bb7ffe9d582dc4ac9f974fab75f15da17820ff4533aed30a0 | MATLAB | 29,621 | 584 | function print2eps(name, fig, export_options, varargin)
%PRINT2EPS Prints figures to eps with improved line styles
%
% Examples:
% print2eps filename
% print2eps(filename, fig_handle)
% print2eps(filename, fig_handle, export_options)
% print2eps(filename, fig_handle, export_options, print_options)
%
% This fun... |
4276a7bd30c9d9e9bb0fee97c52e04e73cd26d974b5221ce51fd1021ac6d4183 | MATLAB | 29,629 | 752 | %MASTER PROCESSING SCRIPT for Mouse Seizure Event Detection in 2PCI data
%
%
%Input .mat file from Suite2P
%Output is .mat file structure with fields to work with data for anaysis
%Outline
% 0) Define Variables/Parameters
% 1) Open EEG from EDF and annotation files
% 2) Open F and Fneu values for cells
% 3) Sort t... |
6f91c523853b5cde18b7c328e1a3e5bacfffa9c2ab6b16ecd397a7936236d7f9 | MATLAB | 29,643 | 799 | % Output:
% 1. chanel mean and std for later normalization
% 2. trial_data
tic
clear all; close all;clc
patient_num = 1
subjects = {'39', '57', '66', '63', '44', '83'};
lock = 'onset'%'response'
ref = 'LM'%[] %:'' 'WM' 'LM' 'ESR [for ir83]' : la placian montage' 'CAR'
par_num = 3;
if pat... |
23359131f102696d1e8f357493955bcd0f88fee1aabbc98cf6a311a805a7febc | MATLAB | 29,760 | 601 | function tracking_enter_exit_BATCH_061919_freehand(loadconfig, tracklocally, recomputeEvHo, camera_params_file)
clc; close all;
warnid = 'images:initSize:adjustingMag';
warning('off',warnid);
timenow = datestr(now,'mm_dd_yy');
lawn_string = ['010219_BATCH_' timenow];
maxwormnumber = 3;
p=10; %use the 10th percentile t... |
7057369d6df30d1d9b17366d26739481f5ed7e3dac04f7684d5d1246d1190f92 | MATLAB | 29,787 | 790 | function [s, info] = dicm_hdr(fname, dict, iFrames)
% [s, err] = dicm_hdr(dicomFileName, dict, iFrames);
%
% DICM_HDR returns header of a dicom file in struct s.
%
% The mandatory 1st input is the dicom file name. The optional 2nd input can be
% a dicom dict, which may have only part of the full dict. The parti... |
3519408eb1e3b4533851dd38b650dcfc6740345e483a87b693e2d82d4d1a122d | MATLAB | 29,808 | 771 | %% SCRATCH: code for scRNAseq and visseq
%% construction
% fprintf(2,'Code under-construction, please try again later \nMuhammad \n')
% return;
%% bgn
clear all
close all
warning('off','all')
uuu=cd;
% cd('/data/runs/samples/')
set(0,'DefaultFigureWindowStyle','normal')
%% get parameters
try
transcendentalDoc = '... |
1503bf461a24b65a7097dac7a52a67761d549a9fec826ee271bee60aa7a56815 | MATLAB | 29,947 | 922 | %% load for my own "rctd" (only rho corr.)
close all
clear all
clc
trial='/data/Technion_analysis/goldfish/visium';
set(0,'DefaultFigureVisible','off');% off / on
set(0,'DefaultFigureWindowStyle','normal')
direct='/data/Technion_analysis/goldfish/visium/cropped/091922_two';
cd(direct)
corrx=['/data/Technion_analysis/go... |
7b8a81d1b5af660e424e7614985b63140b8a060f1301de021c7127011f2a7d09 | MATLAB | 29,962 | 645 | clear all;
%% Set-up Workspace %%
cwd = [pwd filesep]; % Store current working directory
wpms = []; % pre-allocate a workspace variables in struct
% Locate folders of interest - Change if necessary
wpms.DATAIN = fullfile(cwd, [filesep 'Data'], filesep); % /../ skips back a folder
wpms.DATAOUT = [cwd 'MEP_Data_O... |
3e0818ed7d1a452d710a0fae6bab965415eaa0fa76ac80535b05f0d7e3204860 | MATLAB | 30,066 | 352 | function preproc = spm_cfg_preproc
% SPM Configuration file for toolbox 'Old Segment'
%______________________________________________________________________
% Copyright (C) 2005-2016 Wellcome Trust Centre for Neuroimaging
% $Id: spm_cfg_preproc.m 6942 2016-11-21 13:17:44Z guillaume $
if ~isdeployed, addpath(fullfile... |
e739a62ff4c09e1f79fd614abf21dba482cef16bbdcefb9a174b784bb1caa031 | MATLAB | 30,110 | 812 | function [idx, C, sumD, D] = eitherkmeans(X, k, varargin)
%KMEANS K-means clustering.
% [IDX,C] = KMEANS(X, K)
% X is a cell of length NCHOICES
% Each X{i} is a matrix of size N x P(i)
% K is a vector of length NCHOICES
% K(i) is the number of clusters using data X{i}
% This code tries to find the centers C that min... |
737bc70409a01b99df31481f64a6a3d46b05f14cdde046ee4a2a80354761e8f3 | MATLAB | 30,147 | 623 | classdef LoopyModelCollection
properties
% training and test samples
x_train, x_test;
% cell array with strings for each node
variable_names;
% TODO
variable_groups;
% configuration for training
s_lambda_sequence, p_lambda_sequence, density_sequenc... |
786791ae3e43e4c62af9994e38d163c42956c84a2838edf31048065033f75e0b | MATLAB | 30,210 | 782 | classdef Image < handle
%Image A list of neurons in a certain body part
% Detailed explanation goes here
properties
neurons = Neurons.Neuron.empty; % a list of the instances of Neuron class -> see Neuron.m
bodypart % a string consisting the name of the worm's body part
meta_data %... |
4f54881a26f65a2e3d8127709362dc93b968b6e1d801928ea40074db437cb726 | MATLAB | 30,213 | 1,052 | % This function places a grid on the retina, and finds the
% corresponding projections in the SC.
function [grid,fig] = makeProjectionGrid(obj, nPoints, radius, debugFigs)
fig = [];
if(obj.plotFigures == 0)
disp('superposedProjection: plotFigures = 0, hiding figures.')
visFlag = 'off';
else
visFl... |
6d6a24e8c2dcfebfe6854bfafa5c00fc4161bf770b508f682b2aebf4b58c63e9 | MATLAB | 30,386 | 516 | function plot_replay_theta_mixed_effect_model(bayesian_control,rest_option,time_chunk_size,time_window)
% Code for quantifying and plotting the relationship between theta sequence
% and awake replay and sleep replay using mixed effect model
% Input:
% bayesian_control - Use 'all' for analysing first exposure data us... |
1b1e05261f721ecc34a0134f94756f9c754c790c82e68bca50997517ce1d0064 | MATLAB | 30,423 | 972 |
if strcmp('response', lock)
data_length = 1601;
cd(['/mnt/yassamri/iEEG/sandra/groupdata_spectrograms_response_' exp_type])
elseif strcmp('onset', lock)
data_length = 1251 %2101;
cd(['/mnt/yassamri/iEEG/sandra/groupdata_spectrograms_onset_' exp_type])
end
fs = 1000;
dt = 1/fs;
NumVoices = 32;
a0 = 2^(1/NumVoices);
w... |
33061a741fd696f501f337ae7977dad20a6d6bfcfc8a8c50442a8830b98f5e79 | MATLAB | 30,518 | 672 | function varargout = cfg_ui_util(cmd, varargin)
%CFG_UI_UTIL utility functions for displaying job, module and item values
% This function is a collection of utility functions to display a job,
% module or data summary. It also handles all value display and editing for
% a particular item.
%
% This code is part of a bat... |
7ec2c4caab79acc1aa1c216893b1d916c16da6fbe1b3c54d96011a0d7cde8b90 | MATLAB | 30,699 | 340 | function track_replay_events = extract_replay_plotting_final_lap()
% Code to extract and organize replay information from 'significant_events.mat' in order to plot it
% Also loads, 'extracted_position.mat', and 'extracted_sleep_state.mat'
% INPUT
%computer: GPU for supercomputer, for office computer input empty... |
59cb2b6a4233399375d324f38ae69708153324b72f1c5b7133ecceb2a886b7f0 | MATLAB | 30,717 | 870 | function varargout = spm_mesh_render(action,varargin)
% Display a surface mesh & various utilities
% FORMAT H = spm_mesh_render('Disp',M,'PropertyName',propertyvalue)
% M - a GIfTI filename/object or patch structure
% H - structure containing handles of various objects
% Opens a new figure unless a 'paren... |
fb21c24e5d85d0b3615d4f97320acab1390b68509c8eb62c3d4f96c4056379ae | MATLAB | 30,768 | 814 | classdef Plots < handle
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Math Lead & Secondary Developer: Connor Meehan <connor.gw.meehan@gmail.com>
% Bioinformatics Lead: Wayne Moore <wmoore@stanford.edu>
% Copyright (c) 2022 The Board of Trustees of the Leland Stanford Junior Un... |
591cd4bba17894c690b0ee8be83d03b722805cd2df6222bf1afde455db7f871a | MATLAB | 30,941 | 759 | function SPM = spm_spm(SPM)
% [Re]ML Estimation of a General Linear Model
% FORMAT SPM = spm_spm(SPM)
%
% Required fields of SPM:
%
% xY.VY - nScan x 1 struct array of image handles (see spm_vol)
% Images must have the same orientation, voxel size and data type
% - Any scaling should have already been app... |
8380cc269978f8ed9ca4ac43633f815f3c1bfe61d300d616354d8d5323f3227b | MATLAB | 30,992 | 697 | %% Script to analyze the correlation with NP - synaptic - gap and MA degree
% Jan Watteyne - jan.watteyne@kuleuven.be and/or jwatteyne@gmail.com
% 20230607
close all
clear all
%% Import data
%-------------------------------------------
% import general variables from network build
%-------------------------... |
202557e128ee3f2d2fe0e6f66ea294294e15cc875695bd7b8b5b0889fda38c35 | MATLAB | 31,037 | 613 | %% Plot co-expression NPP - GPCRs
% Jan Watteyne - jan.watteyne@kuleuven.be or jwatteyne@gmail.com
% 20230607
clear all
close all
workspace
%% Import data
%-------------------------------------------
% import general variables from network build
%-------------------------------------------
% import gene... |
46bd9f9a6c328ef7af733be2aca5efe9f83f2872dafc80204c57c904d30f3ce8 | MATLAB | 31,160 | 632 | %% plotRawData_BGLU
clc; clear all; close all;
theDir = 'C:\Users\kmfo8\Dropbox\Rutgers\Firestein Lab\Manuscript DRAFTS\2022 BDNF MEA paper\figures\data - BDNF GLU injury recovery\revision_0g30gonly_newPlots\data\';%D:\kate_dropbox\Dropbox
figDir = 'C:\Users\kmfo8\Dropbox\Rutgers\Firestein Lab\Manuscript DRAFTS\... |
805d4c49f3d54def3fcfecd390a01220823918db6a24b0959b7834089149471d | MATLAB | 31,318 | 909 | % function [gcbf,cbfdat] = perf_reconstruct_2D((Filename, FieldStrength, ASLType, FirstimageType, SubtractionOrder, SubtractionType, ThreshFlag, threshold, CBFFlag, MeanFlag, Delaytime, Labeltime, Slicetime, T1b, PASLMo, optionPCA, ASLscaling, M0scaling, diffs)
%
% This MATLAB function is to reconstruct the raw perfu... |
6c68c05c012d99bc8b63d8a47bb21763c05fc19605747f51e394e9f4efafe3df | MATLAB | 31,518 | 1,028 | %% Parallel summary centered violin analysis across locations and groups
% Requires:
% bootstrapRf_goalMode_allScopesSideStratified_v3.m
% analyzeBootstrapZDistribution_v2.m
% Parallel Computing Toolbox
%
% Width plots:
% matched-correct CDF width - real-error CDF width
%
% Proportion plot:
% matche... |
c1c8694c8a5a14ae33be3b4c37842cd86cf11096d820b95c7ac24e3b373eb10e | MATLAB | 31,643 | 718 | % SyGCAMP6s_pool
% Marie Labouesse, marie.labouesse@gmail.com - June 2021
% 1- POOLED DATA
% load matlab spaces generated in: Marie_FP_IndivData_extraction
% puts individual trials into one big matrix (all mice together): PooledINDIV
% calculates the mean of individual trial trajectories aligned to specific ev... |
83b956ee75de1e87737760e5842c5d35b4a3b4f8f6eb88051a9f6abb47f07fb6 | MATLAB | 31,700 | 742 | function varargout = spm_XYZreg(varargin)
% Registry for GUI XYZ locations, and point list utility functions
%
% ----------------
%
% PointList & voxel centre utilities...
%
% FORMAT [xyz,d] = spm_XYZreg('RoundCoords',xyz,M,D)
% FORMAT [xyz,d] = spm_XYZreg('RoundCoords',xyz,V)
% Round specifi... |
783bffe15ddf3d62a702aadd28fba64d41956204f27a23f8606b01c638773ef8 | MATLAB | 31,757 | 860 | close all;
clear;
load('U:\rg-yoshida\Yoshida_lab_shared_folder\Shared Data\Antonio\In vivo data\Babak\preliminary analysis\Space_bin\Space_bin_filt30Kalman.mat')
load('U:\rg-yoshida\Yoshida_lab_shared_folder\Shared Data\Antonio\In vivo data\Babak\preliminary analysis\Space_bin\Spatial_Vel_ROI4.mat')
load('U:\r... |
7b83e3ae24202e4d23be0e84ae56623dd5e00d104795d88b4c1ce004440cc200 | MATLAB | 31,758 | 942 | %% Figure S6c & d (left panel)
% this script rungs additional analysis required for the plots of figure
% S6c & d (left panel)
%%
clear
ft_defaults
%% - SUBJECTS - %%
% ID 18 missing because of LP at 50Hz
subjects = {'OSL13', 'OSL14', 'OSL17', 'OSL21', 'OSL24', 'OSL26', 'OSL27', 'OSL28', ...
'OSL29', 'OSL30', '... |
697ee17789b5d296199af277819cbb71d33c67cde45a1a44dd9bb42a5e63dd3d | MATLAB | 31,874 | 672 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% ################################################################# %% DESCRIPTION
% Script to analyse data for:
% Grieves et al. (2020)
% Quantification of firing rate map procedures
%
% This script
% NOTE: This script is dependent on graphtest... |
024238e8ca11a641b4f267a022702874eb2c1f4793b2f271fa84a383b79b0ab8 | MATLAB | 32,134 | 1,138 | function zStats = analyzeBootstrapZDistribution_v2( ...
Rf, observed, bootstrap, tests, info, ...
zThreshold, plotResults, qRange, nExampleCDF, storePerIterationZ)
%--------------------------------------------------------------------------
% analyzeBootstrapZDistribution_v2
%
% Post-processing function fo... |
a9c8ef4b36d29dd9c91775870070f0d1447f296f061637fb362612a0b47c94f2 | MATLAB | 32,182 | 841 | function varargout = erpviewerx(varargin)
% ERPVIEWERX MATLAB code for erpviewerx.fig
% USAGE:
% erpviewerx(time,DATA,chanlocs[,title]);
%
% time : vector of time points
% DATA : channels X time matrix
% chanlocs : eeglab chanlocs structure
% title : (optional) string title for figure
%
% wri... |
d6564b1615dc82e913c25d732d69e1f7fed082e895c102c904d108a73b544735 | MATLAB | 32,211 | 970 | clear all
close all
dbeh_path='C:\Users\xscogno\MATLAB\Flavio2\Waves\Tracking data\';
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_spikes='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_sorting='C:\Users\xscogno\MATLAB\Flavio2\Waves\Sorting\';
dpath='C:\Users\xscogno\MATLAB\F... |
07eee3ab88ffce381ad11086191bcbcde946f2144902eae24c54dbb0bb1bd876 | MATLAB | 32,241 | 726 | % Call this script to use all functions of the OTBR Toolbox.
%
% Usage: initOTBR
%
%
% Copyright: Attribution-ShareAlike 4.0 International (CC BY-SA 4.0)
% Contact: OTBR-Toolbox@ruhr-uni-bochum.de
% Source Code: https://gitlab.ruhr-uni-bochum.de/ikn/OTBR
%
% Please cite the OTBR Toolbox where this function is use... |
e6781a47bff957a80bfaf1ab54aad16441884cc132554f49ac1a52f5746867d2 | MATLAB | 32,247 | 849 | clc;
% set the root_dir to the directory where the Code and visualization data is located
root_dir = 'fig45';
% Choose a iiject {'NY742', 'NY717', 'NY749'} -- we don't have iiject brains other than these but MNI should work for all Ss
Subj = 'NY717';
% get paths to all visualization files
paths = get_path(root_dir,Sub... |
d9e22c0c01ef21464ec00f7887aa423bc528ecbae97eb6a37fbf98a038db3175 | MATLAB | 32,280 | 928 | % Fig 3b
% Extended data Fig 7b
% Fig 3d
% Extended data Fig 10b
% Extended data Fig 10 k
% Extended data Fig 7e,f
%%
clear all
close all
dbeh_path='C:\Users\xscogno\MATLAB\Flavio2\Waves\Tracking data\';
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_spikes='C:\Users\xscogno\MATLAB\Flavi... |
d357affd3305a1e6ae59b48960caafbf951df84e6e75b0ba1c892673cd7fb01f | MATLAB | 32,283 | 1,197 | function zStats = analyzeBootstrapZDistribution_v2( ...
Rf, observed, bootstrap, tests, info, ...
zThreshold, plotResults, qRange, nExampleCDF, storePerIterationZ)
%--------------------------------------------------------------------------
% analyzeBootstrapZDistribution_v2
%
% Post-processing function for:
% ... |
55f5ccfbba7056fd86cb202308fc1a88dfb743e0e0f522b0cf26729f9b45bd9b | MATLAB | 32,374 | 766 | %% Autocorrelations
clear all
close all
dpath='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
plot_all=1;
[big_table, waves] = get_big_table();
for w=1:length(waves)
row_w=waves(w);
disp(w);
mouse=['L',num2str(big_table(waves(w),1)),'M',num2str(big_table(waves(w),2))];
day=big_table(waves(w),3);... |
19f2d29495eac3dc77fc48b3bdb8b7e687ab05a5bb7af2034909c115bb018bed | MATLAB | 32,410 | 1,161 | classdef c_GUI_Tiler < c_GUI_handle
% c_GUI_Tiler - Class to manage tiling of plots or other graphics in a figure window.
%
% Example:
% hf = figure;
% ht = c_GUI_Tiler('Parent', hf, 'Title', 'Example Tiler');
% ht.addAxes();
% plot(1:10,rand(10,1));
% ht.addAxes('title', 'Tile title', 'relWidth', ... |
447a21479292ccf7a5ebea65ac9387923f760ec9b3aed7197916c2ca8e48a0d7 | MATLAB | 32,482 | 983 | function [Ypk,Xpk,Wpk,Ppk,bxPk] = findpeaks_Elias(Yin,varargin)
%FINDPEAKS Find local peaks in data
% PKS = FINDPEAKS(Y) finds local peaks in the data vector Y. A local peak
% is defined as a data sample which is either larger than the two
% neighboring samples or is equal to Inf.
%
% [PKS,LOCS]= FINDPEAKS(Y) a... |
d5b350ac20345817d1c78bd88d7f0d438ddb1c2716fd19f7332dd10a007a5380 | MATLAB | 32,705 | 716 | % function MAP_fig_1_multi(mname,config)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% ################################################################# %% DESCRIPTION
% Script to analyse data for:
% Grieves et al. (2020)
% Quantification of firing rate map procedures
%
% This script
% NO... |
18efa8b987409a1b21bf7a625017eca4ace4f780a941e4bb09220ec1b665ee94 | MATLAB | 33,034 | 842 | clc;
% set the root_dir to the directory where the Code and visualization data is located
root_dir = 'fig45';
% Choose a subject {'NY742', 'NY717', 'NY749'} -- we don't have subject brains other than these but MNI should work for all subjs
Subj = 'NY717';
% get paths to all visualization files
paths = get_path(root_di... |
c12e6522e02f1f78c2cc6e3a41f598f1dfcbaa34680925207b4acb7ae74185bc | MATLAB | 33,061 | 810 | function buildDocs
% Builds the HTML documentation of the OTBR Toolbox in docs/html.
%
% Two kinds of pages are generated:
% - one page per function listed in docs/public_api.md, generated from
% the help text of the function -- the same text that "help name"
% shows. The help text is the only source; nothing... |
b41bb4ddb3dabf91aa29ddc97a9ed768542afbe96afd84e90f0bee360c5f87b2 | MATLAB | 33,071 | 778 | function FP_extraction_rotarod_Arturo(PATH,data_names,done,overwrite)
% TDTimport_newrig
% Plot data from new rig
set(0,'defaultfigurecolor',[1 1 1])
%% INITIALIZE
% Initialize Preprocessing info structure
Preprocessing = struct(...
'path_to_tank', [],...
'sampling_rate', [],...
'sampling_rate_ds... |
399f1ffae2c9e0bd913eebbddc71250576fd276f3bfff9f9abfcd0399cb12ce2 | MATLAB | 33,270 | 802 | %% Analysis for each cycle of the oscillation separately - Phase
clear all
close all
dpath='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
plot_all=1;
[big_table, waves] = get_big_table();
%Params
pixel_size_new=1.18185;
pixel_size_old=1.78211;
N_sh=200;
count_s=0;
% data=load('C:\Users\xscogno\MATLAB\Flavio2\W... |
46be8dc6cacf74ec5355630eff84e0bc05265467d3762e8aeb861953f31af1fa | MATLAB | 33,467 | 523 | % Plot single cell correlation between laps
% Marta Huelin
% Loads extracted data for each protocol session and for all rats
% INPUT:
% 'parameter' is a string and defines the information you are analysing and that is a field in singleCell_LAPScorr structure.
% Can be norm_centreMass_diff, centreMass_diff, ... |
8f34a8ad2da6ad8b258d4b0c0ec09a307b8a134f8cc52a5694190c520e67e04f | MATLAB | 33,473 | 1,055 | clear all
close all
dbeh_path='C:\Users\xscogno\MATLAB\Flavio2\Waves\Tracking data\';
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_spikes='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_sorting='C:\Users\xscogno\MATLAB\Flavio2\Waves\Sorting\';
dpath='C:\Users\xscogno\MATLAB\F... |
ccd917aaba280537c493b8ab2d59461f4fac19456a610f244e60a22fe2d6fd40 | MATLAB | 33,478 | 640 | % main script for analyzing micro-electrode array (MEA) data %%%%%%%%%%%%%%
% 5/12/2016 combined this main function with GetSpikePoints for feeding %%%
% into WaveClus analysis. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% 6/16/2021 needed to change the way the raw data was accessed: this %%%%%%
% version (_... |
a9585272a1574085fc318b1f37e375ad40c92383e99dbba45ebc860e1088e7ee | MATLAB | 33,511 | 810 | classdef GoogleDrive < handle
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Copyright (c) 2022 The Board of Trustees of the Leland Stanford Junior University; Herzenberg Lab
% License: BSD 3 clause
properties(Constant)
URL_FILE_PREFIX="https://drive.google.com/file/d";... |
aee04df95a0669f5376c94b450f8279683b926705c668e8a9e99784a28859a9a | MATLAB | 33,532 | 768 | function pipeline_01_NEAR_ICA(study_info)
addpath('/home/bonaiuto/eeglab2021.1');
addpath('adjusted_adjust');
ext='.set';
% Channel location file
channel_locations = '/home/bonaiuto/dev_beta_umd/data/GSN-HydroCel-64.sfp';
% Initialize the filters
% High-pass frequency
highpass = 1;
% Low-pass frequency
lowpass = 1... |
f79a2638d05ece15a870645cec51107048d6945e394366d91fd4af26f2b3cedb | MATLAB | 33,576 | 923 | function ds = spm_uw_estimate(P,par)
% Estimation of partial derivatives of EPI deformation fields
%
% FORMAT [ds] = spm_uw_estimate((P),(par))
%
% P - List of file names or headers.
% par - Structure containing parameters governing the specifics
% of how to estimate the fields.
% .M ... |
71b464451c7b7c0f69c86d631aecb836db1c8ba98231969933f4396b21ebaa9d | MATLAB | 33,642 | 743 | %% Spot Stats Bulk Export
% By Thomas Murphy, UC Riverside
% Last updated 08/2021
% Allows user to select multiple spots objects for stats export, specify Excel sheet names, and collect all
% stats data into a single summary .xlsx document. User may specify either "Summary" or "All" stats
% export. "Summ... |
e717696b92760f73b913de8d3e69466755406e3ca4011d6ff2500172b8953723 | MATLAB | 33,661 | 776 | function varargout = fun_kmeans(X, k, varargin)
%KMEANS K-means clustering.
% IDX = KMEANS(X, K) partitions the points in the N-by-P data matrix X
% into K clusters. This partition minimizes the sum, over all clusters, of
% the within-cluster sums of point-to-cluster-centroid distances. Rows of X
% corre... |
2584fdb17281691bc8ed78bd97e416dca8b4793434d279f062b877b2809606e7 | MATLAB | 33,720 | 1,055 | function nvr_rec_cb(flag,opt,op2)
%
% This is the callback function for the nvr_recorder panel.
%
% Created: 1/21/02 by Steven Eliades
%Master callback file
global nvr
global SNum
% turn on the debug mode: using saved data from data file to debug the code
nvr.debug_flag=1;
% if(nvr.debug_flag==... |
4300c0dfee7931dbe4a39126f75685670c6fd9b651d36f8e2b1c633c84bbb61a | MATLAB | 33,748 | 956 | %% indicate variables
clear all ;close all; clc
theta_test = 'yes'
subj = '57'
freq_analysis = 'wavelet'
select_chan = 3
lock ='onset' %'response' %
exp_type ='tuning_correct' % {'study_test' 'tuning' 'tuning_correct' 'tuning_incorrect' 'indoor_outdoor'}
minfreq = 3;
maxfreq = 200;
cd (['/mnt/yassamri/iEEG/sandra/su... |
2fef6dd181af319bf82a876bc5dac4ebc9ce3222c1321e0e04149e760cbe091d | MATLAB | 33,792 | 858 | function predict_movement_direction(data)
% predict_movement_direction Essence of the real-time fUS-BMI
% This function takes in a data point and performs the fUS-BMI task using
% its information.
%
% Stripped version for simulated data for real-time fUS-BMI paper.
% Removed TCP socket information
%
%
% INPUTS:
% da... |
29404b3ffbb5600215821c3f0573ad51f803cec6ab2a526f1b74236f4690d51d | MATLAB | 33,991 | 666 | clearvars -except ET_data
os = 'Windows';
% os = 'Mac';
ET_subjID = 5:7;
ET_volt_data = struct([]);
switch os
case 'Mac'
if exist('ET_data','var') == 1
else
load('~/Downloads/ET-Dopamine-manuscript/Data/ET_task_data.mat')
end
for i = 1:numel(ET_sub... |
aa591c6f3009a4c08699fb67e4a90df92ede4120f08440691a9e01fd9edd58c2 | MATLAB | 34,235 | 932 | function [SPM,xSPM] = spm_getSPM(varargin)
% Compute a specified and thresholded SPM/PPM following estimation
% FORMAT [SPM,xSPM] = spm_getSPM;
% Query SPM in interactive mode.
%
% FORMAT [SPM,xSPM] = spm_getSPM(xSPM);
% Query SPM in batch mode. See below for a description of fields that may
% be present in xSPM input.... |
86f6a5e932b6da199fc2c14bb1f4d2762084fc5b47b026031e139000e00c35a2 | MATLAB | 34,302 | 665 | %eopn3_closedloop_openfield_pool
%%
close all; clear variables; clc;
set(0,'defaultfigurecolor',[1 1 1])
show_plot = 1;
save_plot = 1;
done = 1;
overwrite = 1;
reanalysis = 1;
%%
filedirectory = uigetdir('select folder'); %select the overall folder, eg 'deeplabcut sheets'
Path2savingfolderALL = fi... |
6a28734e6e4487f16b69ce3d92ca806de3ad824c6f7deda547f98427b5380e4c | MATLAB | 34,335 | 823 | function varargout = spm_mip_ui(varargin)
% GUI for displaying MIPs with interactive pointers
% FORMAT hMIPax = spm_mip_ui(Z,XYZ,M,DIM,F,units)
% Z - {1 x ?} vector point list of SPM values for MIP
% XYZ - {3 x ?} matrix of coordinates of points (Talairach coordinates)
% M - voxels - > mm matrix
% DIM ... |
78e29ff441db76914eb233014d9c43c3157c7eb3738c4d0196f717bc08d8a65e | MATLAB | 34,347 | 685 | % NUMBER OF LOCAL AND REMOTE AWAKE REPLAY EVENTS IN TRACKS PER PROTOCOL
% MH 2020
% Plots a figure per protocol. Each subplot is a rat. Within subplot, all tracks plotted with bar plot, each bar indicating number of replay events
% decoded during that track, for each possible track decoded.
% INPUT:
% Mutlievents: 1... |
b7edc9566da9fadfc6cf6cc4ba3d4164192f9ef64e3447cc06fb56086b2e68d3 | MATLAB | 34,360 | 594 | function filledkData = GRAPPA_JDR_V2(kData,kCalib,kernelSize,lambda, Rfactor)
% Dengrong Jiang, 09-22-2015, Johns Hopkins BME
% Modified from GRAPPA.m written by Michael Lustig 2008
[Nky,Nkx,Ncoil] = size(kData);
% decide which direction is the foldover direction, transpose kData if it's
% not along Ky
isKx = sum(abs(... |
178f36ac76533df463ae7e933c4e7df469adf5d66ea7dac55e164cb8b4490adb | MATLAB | 34,474 | 984 | classdef PopUp < handle
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Copyright (c) 2022 The Board of Trustees of the Leland Stanford Junior University; Herzenberg Lab
% License: BSD 3 clause
methods(Static)
function l=CLOSE_LABEL
l=['<html>' BasicMap.Globa... |
330b257ad3e24a5e6de33bb54702727c88b56b02629707269ef84137faf6cf1a | MATLAB | 34,769 | 600 | function histogram_replay_events(plot_type,epoch, merge_exposures,data_type,bayesian_control)
% Plots distribution of replay events over time for each track and protocol.
% Histogram is calculated as the sum of replay events divided by number of active sessions.
% INPUT:
%plot_type: 'sum' for showing normal hist... |
5b4af4ce38c270430c5b3bd7a98e51f73a61df22bdf12379d32c1d5c86ed62b0 | MATLAB | 34,832 | 853 | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Summary
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% This code loads in each trial for each condition for each subject. Then
% computes a head model. Source localizes the data with ... |
03b7944b3f6d7d5ebc03ee34956541da1565c73d0eeb91b7b1371808b88719ec | MATLAB | 35,117 | 1,337 | function Out = make_decode_summary_ABCD_v6_singleTraceColumn(pred_xy, gt_xy, t_mid, err_euclid, Spatial_Vel, M, varargin)
% MAKE_DECODE_SUMMARY_ABCD_V6_SINGLETRACECOLUMN
% -----------------------------------------------------------------------------
% Same as v6, but with one trace-example column and larger labels:
%
%... |
80439a8a59f180785ab05e7831f5fab2cd72aeed915e82b0a789740f3b3d4e30 | MATLAB | 35,273 | 957 | classdef SuhFcs < handle
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Copyright (c) 2022 The Board of Trustees of the Leland Stanford Junior University; Herzenberg Lab
% License: BSD 3 clause
properties(Constant)
DFLT_X='SuhFcs.DefaultX2';
DFLT_Y='SuhFcs.Defau... |
e98459f3e6ed71e4cc2ef04cb2f9810aaf2f7db15055eb840a29ecb10b008ef3 | MATLAB | 35,282 | 770 | % Script to plot Supplementary Figure 3, calculate statistics reported, and
% save data to Excel spreadsheets that are then imported into the Source
% Data file.
% Kit Longden 2023.
addpath ../Shared_functions/
% Rescue data
% -----------
load ../../results/Figure_3/Rh_rescue_data_panel_a_b.mat cpRh* idRh*
% Shibir... |
0e53ac90ccb7f45866fae17825aa24551d1fd07def01139824586c356934a79b | MATLAB | 35,310 | 921 | %SpiketoText - Worked Example of CustomFileTemplate (Spike2 / CED text export)
%{
PURPOSE:
Import function for Spike2 (CED) text exports - the "*_export.txt" files
produced by exporting a .smr recording as text. Built from
CustomFileTemplate.m. Steps specific to THIS format are labelled
[DATA-SPECIFIC]; steps t... |
9636b4cd696a9fcb03235a66577aa947aae503d6b703406e0ec47546ffe253b4 | MATLAB | 35,463 | 957 | % Analysis of scatter plot of delta preferred phase VS pairwise anatomical
% distance
clear all
close all
rec_data_path='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
data=load('C:\Users\xscogno\MATLAB\Flavio2\Waves\Semi final scripts\Final scripts\Outputs\locking_all_sessions_280821\locking_all_sessions.mat');
... |
358f695ec8c2ed83a5cd0e38a9168abc944b324f7713d6b1434bd2901abe8c20 | MATLAB | 35,568 | 684 | function shoot = tbx_cfg_shoot
% MATLABBATCH Configuration file for toolbox 'Shoot Tools'
% $Id: tbx_cfg_shoot.m 7389 2018-08-06 13:35:48Z john $
if ~isdeployed, addpath(fullfile(spm('dir'),'toolbox','Shoot')); end
% ---------------------------------------------------------------------
% images Images
% ------------... |
c03dd296995238179ed103eb34110da27a948aa7bbcffe3658268470007a192f | MATLAB | 35,800 | 765 | %eopn3_closedloop_openfield_finemovements
% loads dlc datasheets, aligns body positions with TTL (from the videos, stored in CSV file) and extracts more precise info on movement
% here in this analysis, we only take the 'laser on' trials
% exports data into workspace for each group (GFP or eOPN3) which can then be... |
696b252a1defd3955b0e37b16b967551f80974d76a3d54c7997d47992e189cc0 | MATLAB | 35,836 | 852 | function twix_obj = mapVBVD_DJ(filename,varargin)
% Reads Siemens raw .dat file from VB/VD MRI raw data.
% requires twix_map_obj.m & read_twix_hdr.m
%
%
% Author: Philipp Ehses (philipp.ehses@tuebingen.mpg.de)
%
%
% Philipp Ehses 11.02.07, original version
% [..]
% Philipp Ehses 22.03.11, port to V... |
cc1a8439825251fb055f83a56a4119afc93ea2a463ca8ffb3aa9cb42b6950203 | MATLAB | 35,889 | 778 | % function MAP_fig_1_multi(mname,config)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% ################################################################# %% DESCRIPTION
% Script to analyse data for:
% Grieves et al. (2020)
% Quantification of firing rate map procedures
%
% This script
% NO... |
18071e17f8d93107c1ffa8613e56fd984ca98e9a29d895753a56e664ce71f609 | MATLAB | 35,936 | 898 | classdef SuhHeatMap < handle
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Copyright (c) 2022 The Board of Trustees of the Leland Stanford Junior University; Herzenberg Lab
% License: BSD 3 clause
properties(Constant)
PROP_COLOR_SCHEME='heatMapScheme';
COLOR_SC... |
215a63052a7c150f74874b3260e0aafbc584cf2599fc9a8027fdcaa51a0c5b6a | MATLAB | 36,130 | 1,280 | %% creating source data for each figure in ms
% each cell tell which script to run
%%
addpath(genpath('/mnt/yassamri/iEEG/sandra/analysis_pipeline_final'))
%% figure 1b. First run A001_plot_behavior, transpose the
% paramters below, then save into table. the cell with lines...
% 137 has these variables
T = [ [1:8]' p... |
5e90b105faee1e1d619c6769a0cb0498a47b12b42d2f27073ada52317aac5fdf | MATLAB | 36,131 | 864 |
close all;
clear;
load('U:\rg-yoshida\Yoshida_lab_shared_folder\Shared Data\Antonio\In vivo data\Babak\preliminary analysis\Space_bin\Space_bin_filt30Kalman.mat')
load('U:\rg-yoshida\Yoshida_lab_shared_folder\Shared Data\Antonio\In vivo data\Babak\preliminary analysis\Space_bin\Spatial_Vel_ROI4.mat')
load('U:... |
6ca8dbe25c31946f7d79456454c714e67dffdb839856d7027b45d1c530aaa83a | MATLAB | 36,431 | 852 | classdef UstTest
% AUTHORSHIP
% Primary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Secondary Developer: Connor Meehan <connor.gw.meehan@gmail.com>
% Bioinformatics Lead: Wayne Moore <wmoore@stanford.edu>
% Copyright (c) 2022 The Board of Trustees of the Leland Stanford Junior University; Herzenber... |
ec32d001a852b0dd1aaf943c30c778e72588dea2bc0cc90edd3645eefcb9f26b | MATLAB | 37,028 | 1,262 | clear all
close all
dbeh_path='C:\Users\xscogno\MATLAB\Flavio2\Waves\Tracking data\';
rec_data_path = 'C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_spikes='C:\Users\xscogno\MATLAB\Flavio2\Preprocessed_data\';
dpath_sorting='C:\Users\xscogno\MATLAB\Flavio2\Waves\Sorting\';
dpath='C:\Users\xscogno\MATLAB\F... |
a58ae82551f29f0de70a60888e294fb9d6bf83692038ea411fd02e36649ff08f | MATLAB | 37,187 | 688 | function [reduction, umap, clusterIds, extras, epp]...
=run_examples(whichOnes, verbose, varargin)
% AUTHORSHIP
% Math Lead & Primary Developer: Connor Meehan <connor.gw.meehan@gmail.com>
% Secondary Developer: Stephen Meehan <swmeehan@stanford.edu>
% Bioinformatics Lead: Wayne Moore <wmoore@stanford.edu... |
000bacaddbd637e4fd45b2c446e2d5d8f9253a3c07a08fd6f2df6819af70a6ba | MATLAB | 37,289 | 1,047 | function sys = ORD2011()
% ORD2011 O'Hara-Rudy model of human ventricular action potential.
% The ORd model is described in the "Simulation of the Undiseased
% Human Cardiac Ventricular Action Potential: Model Formulation and
% Experimental Validation" by Thomas O'Hara, Laszlo Virag, Andras
% Varro... |
d6757e3f24b24f739cd1f6f741fe3d927cc68b3cdc2232f542bb53a0f09900c3 | MATLAB | 37,378 | 734 | classdef videoTracker < handle
% vT = videoTracker(vInNme, vInNr, vInFormat, savFName)
%
% Videotracker object. Detects a bright object on dark background.
% Can be changed to detect dark object on bright background.
% Writes to a memory mapped file (camera serial _dat.txt), writes
% [x, y, ang... |
c83275390a2ee1141bc8927bf64fd3167bab78168c065ee49d54cebef4351cc2 | MATLAB | 37,396 | 689 | % Calculates rate of replay (events/min) for each track during sleep periods. To do so divides periods in 30min chunks. Plots rates for each
% 30min chunk and compares it between tracks.
% INPUT:
% data_type: 'main' for using data from main HIPP replay project; 'speed' for using speed protocol data; and 'ctrl' for ... |
b5d65403052226eca51b961b339e6eb62de14f99d5fd52badfe3035895782eae | MATLAB | 37,413 | 766 | clc; clear all; close all;
dataLoc = 'C:\Users\kmfo8\Dropbox\Rutgers\Firestein Lab\MEA papers -- addl experiments\EXP for BDNF + glu\Glutamate cell death, BDNF treatment\v3 (final) of analysis\';%D:\kate_dropbox\Dropbox
figDir = 'C:\Users\kmfo8\Dropbox\Rutgers\Firestein Lab\MEA papers -- addl experiments\EXP for BD... |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.