sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
14fc18950c562ee406ce0f20e67ac2c59600cc4e0e80a5edf4b1101930b7e568 | NEURON | 128 | 11 | NEURON { SUFFIX nothing }
VERBATIM
double foo = 42.0;
ENDVERBATIM
FUNCTION get_foo() {
VERBATIM
return foo;
ENDVERBATIM
}
|
ba62140773e800187d72eb422e39b0f8fee26a8454b752f5fe0517ef22b3d645 | NEURON | 129 | 14 | NEURON {
POINT_PROCESS InitSyn
RANGE a0
}
ASSIGNED {
a0
}
NET_RECEIVE(w, a) {
INITIAL {
a = a0
}
}
|
576da65c3b7b03bd5bbe696ac2c2410d7a26bab9723821a45aa9a870f53c56b6 | NEURON | 130 | 14 | NEURON {
SUFFIX valence_mod
USEION K READ Ki VALENCE 222
RANGE x
}
ASSIGNED {
x
Ki
}
INITIAL {
x = Ki
}
|
fc438ebc05825805b9461f46ee8c5c6241424eb4daa2e673600957ef4d1fe712 | NEURON | 131 | 16 | NEURON {
POINT_PROCESS receiver
RANGE y
}
ASSIGNED {
y
}
INITIAL {
y = 0.0
}
NET_RECEIVE(w) {
y = y + 0.1
}
|
d6855d0d31c00e250e4c52d1edb4a423363a58dbe5d250c5e19a153aeb4b9a29 | NEURON | 136 | 13 | NEURON {
SUFFIX ionic
USEION na READ ina WRITE ena
}
ASSIGNED {
ina (mA/cm2)
ena (mV)
}
BREAKPOINT {
ena = 42.0
}
|
fbfc87e31dbfc77c8312dfc14b37865768dd2610b88d862d4310cd522948d4a5 | NEURON | 139 | 20 | NEURON {
SUFFIX read_only
GLOBAL c
}
PARAMETER {
c = 2.0
}
STATE {
x
}
INITIAL {
x = 42
}
BREAKPOINT {
x = c
}
|
53db87913a77461a4244f8085bc19e28898cd7df2bdae3228a7a519f273c5ab0 | NEURON | 149 | 12 | : simple first-order model of calcium dynamics
NEURON {
SUFFIX ican
USEION n READ ni, in WRITE ni
RANGE n
}
ASSIGNED {
in (mA/cm2)
}
|
d070f082f5b7933f1150e957c7700cda7476f98a3d220e50a3bbf69a7c59cf58 | NEURON | 149 | 14 | NEURON {
SUFFIX internal_function
THREADSAFE
}
FUNCTION f() {
VERBATIM
return g(_threadargs_);
ENDVERBATIM
}
FUNCTION g() {
g = 42.0
}
|
736c11e0d2c64ea57d6fc99b8efa30aef6cf81909d0c8065cf7e6cad5d5bc6a4 | NEURON | 150 | 20 | NEURON {
SUFFIX cnexp_scalar
}
STATE {
x
}
INITIAL {
x = 42
}
BREAKPOINT {
SOLVE dX METHOD cnexp
}
DERIVATIVE dX {
x' = -x
}
|
0ed4f868a5762084bf5b766d9a9e6d5fe642f3f3304415b6936848d166d5b2b1 | NEURON | 152 | 13 | : The name of this mod file should be `point_suffix`.
NEURON {
POINT_PROCESS point_suffix
RANGE x
}
ASSIGNED {
x
}
INITIAL {
x = 42
}
|
85491d8a0e803769864e720f7224af9e297c635fe2179dcb57c9b0fe57d65965 | NEURON | 154 | 16 | NEURON {
SUFFIX global
GLOBAL gbl
}
ASSIGNED {
gbl
}
FUNCTION get_gbl() {
get_gbl = gbl
}
PROCEDURE set_gbl(value) {
gbl = value
}
|
b0344675533a11c277ec333b6336104b2cb0234cacbc27baf243f8c4f1405142 | NEURON | 160 | 17 | NEURON {
SUFFIX shared_counter
GLOBAL g_cnt
}
ASSIGNED {
g_cnt
}
INITIAL {
PROTECT g_cnt = 0
}
BREAKPOINT {
PROTECT g_cnt = g_cnt + 1
}
|
323566f5f65668dbb7c3fac109881c47bd80388ad81fd76b84f71371e0228bc4 | NEURON | 163 | 17 | NEURON {
SUFFIX ode
NONSPECIFIC_CURRENT il
}
ASSIGNED {
il
v
}
FUNCTION voltage() {
voltage = 0.001 * v
}
BREAKPOINT {
il = voltage()
}
|
4c648979839ca6101961fd3f706c4f83d20595eaf5665675c2a4e22eb4e5b26f | NEURON | 166 | 18 | NEURON {
SUFFIX accessors
NONSPECIFIC_CURRENT il
}
ASSIGNED {
v
il
}
BREAKPOINT {
il = 0.003
}
FUNCTION get_voltage() {
get_voltage = v
}
|
5e5bac23e9fb04b7d5e321051fb3310d9869b062cff5a07770fa30291b689047 | NEURON | 166 | 20 | NEURON {
SUFFIX derivimplicit_scalar
}
STATE {
x
}
INITIAL {
x = 42
}
BREAKPOINT {
SOLVE dX METHOD derivimplicit
}
DERIVATIVE dX {
x' = -x
}
|
2ca0323654c47556c11a4b16b000d99879728e3b7f16247b339af6ac9e943f68 | NEURON | 175 | 16 | NEURON {
SUFFIX NeuronVariables
RANGE range_celsius
}
PARAMETER {
celsius = 123.456
}
ASSIGNED {
range_celsius
}
BREAKPOINT {
range_celsius = celsius
}
|
c4e7d6514890295f58c95e53b821aef3ce335ac0903bebe94982835bb8d753ae | NEURON | 180 | 11 | NEURON {
SUFFIX recursion
}
FUNCTION fibonacci(n) {
if (n == 0 || n == 1) {
fibonacci = 1
} else {
fibonacci = fibonacci(n-1) + fibonacci(n-2)
}
}
|
70f025f1050a56e1d7a27c7521cfdba8118dcec5a5399053f2a461822af5bfe6 | NEURON | 188 | 18 | NEURON {
POINT_PROCESS ForNetconsSyn
RANGE a0
}
ASSIGNED {
a0
}
NET_RECEIVE(w, a) {
INITIAL {
a = a0
}
FOR_NETCONS(wi, ai) {
ai = 2.0*ai
}
}
|
f22f1be2b2a88fef4085f29d337a23721acd7f434761c29bdcac983eaf2aa205 | NEURON | 188 | 16 | NEURON {
SUFFIX pointing
POINTER ptr
}
ASSIGNED {
ptr
}
FUNCTION is_valid() {
if (nrn_pointing(ptr)) {
is_valid = 1.0
} else {
is_valid = 0.0
}
}
|
3e1cca9c51edaf792e4d5eef848d506e38cd4bdfc4490d25a16c88ab4ffa3a8e | NEURON | 191 | 11 | NEURON {
SUFFIX nothing
}
FUNCTION forty_two_plus_x(x) {
forty_two_plus_x = 42.0 + x
}
FUNCTION twice_forty_two_plus_x(x) {
twice_forty_two_plus_x = 2.0 * forty_two_plus_x(x)
}
|
a4c2daf90f3ee753421aac0cbbada2de19b9155e3448c2ba6345b2d466a93280 | NEURON | 191 | 18 | NEURON {
SUFFIX dst
EXTERNAL gbl_src, param_src
}
ASSIGNED {
gbl_src
param_src
}
FUNCTION get_gbl() {
get_gbl = gbl_src
}
FUNCTION get_param() {
get_param = param_src
}
|
3eeb5bfdbd1589a626b988038344b5d436675dcea79add97b0b0ef1004b6a953 | NEURON | 201 | 21 | UNITS {
(mA) = (milliamp)
}
NEURON {
SUFFIX leonhard
NONSPECIFIC_CURRENT il
RANGE c
}
ASSIGNED {
il (mA/cm2)
}
PARAMETER {
c = 0.005
}
BREAKPOINT {
il = c * (v - 1.5)
}
|
43765beef5fb58941ea871f2d4f8b8f63a4628536a9a08c4871b5dd4f0f2dd54 | NEURON | 201 | 21 | UNITS {
(mA) = (milliamp)
}
NEURON {
SUFFIX leonhard
ELECTRODE_CURRENT il
RANGE c
}
ASSIGNED {
il (mA/cm2)
}
PARAMETER {
c = 0.005
}
BREAKPOINT {
il = - c * (v - 1.5)
}
|
2d7e86076143e6451c7b94b7c171512895eb4b088004524f94eeef282a204f7b | NEURON | 206 | 21 | NEURON {
POINT_PROCESS toggle
RANGE y
}
ASSIGNED {
y
}
INITIAL {
y = 0
net_send(2.001, 1)
}
NET_RECEIVE(w) {
y = y + 1.0
if(t < 3.7) {
net_send(4.001 - t, 1)
}
}
|
8c3680deba5f4cd681d020d1c75af194830bc7e328904f1c9ac67cd45453b068 | NEURON | 209 | 26 | NEURON {
SUFFIX lin
}
STATE {
xx
yy
}
PARAMETER {
a = 2.0
b = 3.0
c = 4.0
d = 5.0
}
INITIAL {
SOLVE system
}
LINEAR system {
~ a*xx + b*yy = 0
~ c*xx + d*yy = 0
}
|
fcccd546e22a6fe4bd91a3000a80fb802bc1aff1bd586c88d741127d7d10e033 | NEURON | 209 | 17 | NEURON {
POINT_PROCESS ctor
GLOBAL ctor_calls, dtor_calls
}
ASSIGNED {
ctor_calls
dtor_calls
}
CONSTRUCTOR {
ctor_calls = ctor_calls + 1
}
DESTRUCTOR {
dtor_calls = dtor_calls + 1
}
|
002bb27c06c3b92373531452ed361d60cf5fa476e14b28638e0d619ede4ef4cf | NEURON | 212 | 21 | NEURON {
ARTIFICIAL_CELL art_toggle
RANGE y
}
ASSIGNED {
y
}
INITIAL {
y = 0
net_send(2.501, 1)
}
NET_RECEIVE(w) {
y = y + 1.0
if(t < 3.7) {
net_send(4.501 - t, 1)
}
}
|
7576a432e414bf17d7b01e2592b731a93e3d8b052da6e76c89c51b1943f88784 | NEURON | 215 | 17 | NEURON {
ARTIFICIAL_CELL art_ctor
GLOBAL ctor_calls, dtor_calls
}
ASSIGNED {
ctor_calls
dtor_calls
}
CONSTRUCTOR {
ctor_calls = ctor_calls + 1
}
DESTRUCTOR {
dtor_calls = dtor_calls + 1
}
|
bca47c3087a23b3d8bdc35f64bb151c886b9a8bf928bd4bc00e8b87d6bb7865a | NEURON | 226 | 24 | NEURON {
SUFFIX functions
RANGE x
}
ASSIGNED {
x
}
FUNCTION x_plus_a(a) {
x_plus_a = x + a
}
FUNCTION v_plus_a(a) {
v_plus_a = v + a
}
FUNCTION identity(v) {
identity = v
}
INITIAL {
x = 1.0
}
|
a684f491f4b24464ee527928f501faac1e1567d6c1373ee8bc5a151fa54b1da3 | NEURON | 228 | 21 | NEURON {
POINT_PROCESS spiker
RANGE tnext
}
ASSIGNED {
tnext
}
INITIAL {
tnext = 1.001
}
NET_RECEIVE(w) {
LOCAL tt
tt = tnext
if(t >= tt) {
net_event(t)
tnext = tnext + 1.0
}
}
|
c14616839ea9a901746f5e5a9c3cdea7b19781c9b341b92fcaf3719b43ce0197 | NEURON | 232 | 25 | NEURON {
SUFFIX default_values
RANGE Z, B
GLOBAL X0, Z0, A0, B0
}
STATE {
X
Y
Z
A[3]
B[2]
}
PARAMETER {
X0 = 2.0
Z0 = 3.0
A0 = 4.0
B0 = 5.0
}
INITIAL {
Z = 7.0
B[1] = 8.0
}
|
85b3de4ae1b0ddeab19f6d3bd5ea35610890f765867cca878d7cc59df5f28ab9 | NEURON | 234 | 21 | NEURON {
SUFFIX nonlin
}
STATE { x }
FUNCTION solve() {
: Iterative solvers need a starting guess.
x = 1.0
SOLVE eq
solve = x
}
NONLINEAR eq {
~ x*x = 4.0
}
FUNCTION residual(x) {
residual = x - 2.0
}
|
689cfb95937470d5de4c8aefa885e1cb1df18c622a4f5a01bffdd2238a005bb3 | NEURON | 236 | 24 | NEURON {
ARTIFICIAL_CELL art_functions
RANGE x
GLOBAL gbl
}
ASSIGNED {
gbl
v
x
}
FUNCTION x_plus_a(a) {
x_plus_a = x + a
}
FUNCTION identity(v) {
identity = v
}
INITIAL {
x = 1.0
gbl = 42.0
}
|
5dd8bc91b1019bcadc77d18b300f2f8960922d16b9cf01e88eeafac9e875c472 | NEURON | 239 | 24 | NEURON {
POINT_PROCESS point_functions
RANGE x
}
ASSIGNED {
x
}
FUNCTION x_plus_a(a) {
x_plus_a = x + a
}
FUNCTION v_plus_a(a) {
v_plus_a = v + a
}
FUNCTION identity(v) {
identity = v
}
INITIAL {
x = 1.0
}
|
61149e82b752096be475a77baa3c0f1b5d24ad18d45b2cb36cedd3c340319e82 | NEURON | 247 | 21 | NEURON {
ARTIFICIAL_CELL art_nonlin
}
STATE { x }
FUNCTION solve() {
: Iterative solvers need a starting guess.
x = 1.0
SOLVE eq
solve = x
}
NONLINEAR eq {
~ x*x = 4.0
}
FUNCTION residual(x) {
residual = x - 2.0
}
|
daca1644306ee3b8ff4d756b73ae079dd89408e161c32d96fe110ab2b9299864 | NEURON | 258 | 29 | NEURON {
SUFFIX thread_newton
RANGE x
GLOBAL c
THREADSAFE
}
ASSIGNED {
c
x
}
STATE {
X
}
INITIAL {LOCAL total
X = 0.0
c = 42.0
}
BREAKPOINT {
SOLVE state METHOD sparse
x = X
}
KINETIC state {
~ X << (c)
}
|
50081e95d29d81f7708c6ecf1f1280942b30b2c1f5f6cb5a4dc1a79784ed99e1 | NEURON | 262 | 27 | NEURON {
POINT_PROCESS NetReceiveCalls
RANGE c1, c2
}
ASSIGNED {
c1
c2
}
INITIAL {
c1 = 0
c2 = 0
}
FUNCTION one() {
one = 1
}
PROCEDURE increment_c2() {
c2 = c2 + 2
}
NET_RECEIVE(w) {
c1 = c1 + one()
increment_c2()
}
|
b726f415550755eef115ac72b822d9404e1b3d53c2560f4191b25bea62796f7a | NEURON | 263 | 31 | NEURON {
SUFFIX state_ode
NONSPECIFIC_CURRENT il
}
STATE {
X
}
ASSIGNED {
il
v
}
INITIAL {
X = v
}
BREAKPOINT {
SOLVE eqn
il = 0.001 * X
}
NONLINEAR eqn { LOCAL c
c = rate()
~ X = c
}
FUNCTION rate() {
rate = v
}
|
b6ea5bcb97bd806142825f44fb18b17ac0014477bfa31e159234cb03d55112e2 | NEURON | 266 | 14 | : Only test if all of these result in compilable code.
NEURON {
SUFFIX limits_mod
}
PARAMETER {
a = 24. (mV) <-2, 3>
b = 24. (mV) <-2.1, 3>
c = 24. (mV) <-4.1,-3>
x = 24. (mV) < -2, 3>
y = 24. (mV) < -2.1, 3>
z = 24. (mV) < -4.1, -3>
}
|
5dd3c230e8d0d36a3020781aa8e76d261c4892556be9cd9915ecc7a2778b5a22 | NEURON | 267 | 22 | NEURON {
SUFFIX func_in_breakpoint
NONSPECIFIC_CURRENT il
}
ASSIGNED {
il
}
PARAMETER {
c = 1
}
PROCEDURE func() { }
PROCEDURE func_with_v(v) { }
PROCEDURE func_with_other(q) { }
BREAKPOINT {
func()
func_with_v(v)
func_with_other(c)
}
|
bf125a91f7e126c0c65cc4211973a7bc42030c5b719372d140604df6bcc654b7 | NEURON | 281 | 25 | NEURON {
POINT_PROCESS spiker
RANGE y, z
}
ASSIGNED {
y
z
}
INITIAL {
y = 0.0
z = 0.0
net_send(1.8, 1)
}
NET_RECEIVE(w) {
if(flag == 0) {
y = y + 1
net_move(t + 0.1)
} else {
z = z + 1
net_send(2.0, 1)
}
}
|
9bf38f835205ae3cda6086eed33323bb46324160e6d7c48984b8de080fc36d5d | NEURON | 287 | 25 | NEURON {
ARTIFICIAL_CELL art_spiker
RANGE y, z
}
ASSIGNED {
y
z
}
INITIAL {
y = 0.0
z = 0.0
net_send(1.8, 1)
}
NET_RECEIVE(w) {
if(flag == 0) {
y = y + 1
net_move(t + 0.1)
} else {
z = z + 1
net_send(2.0, 1)
}
}
|
ac57165e21ae208c9ea7183b12990afbe31718ce7dd96de45244ddc3ca99f515 | NEURON | 289 | 33 | NEURON {
SUFFIX finite_difference
GLOBAL a
THREADSAFE
}
ASSIGNED {
a
}
STATE {
x
z
}
INITIAL {
x = 42.0
z = 21.0
a = 0.1
}
BREAKPOINT {
SOLVE dX METHOD derivimplicit
}
DERIVATIVE dX {
x' = f(x)
z' = 2.0*f(z)
}
FUNCTION f(x) {
f = -a*x
}
|
acf96a5fb045266093bbec16e8980f0a1023a4f2f310db8afc8ef0328ac8cd0c | NEURON | 292 | 18 | : This checks for a code-generation bug that resulted in a faulty ctor
: call. It requires an ion to have a "style", followed by other ions.
NEURON {
SUFFIX style_ion
USEION ca WRITE cai, eca
USEION na READ nai
}
ASSIGNED {
cai
eca
nai
}
INITIAL {
cai = 42.0
}
|
5be46e8a17bcf2030922ca21ea85d9ff4ef5b2c2d0f48a194af1a5216c52b05a | NEURON | 300 | 30 | NEURON {
SUFFIX cnexp_array
RANGE z
}
ASSIGNED {
z[3]
}
STATE {
x
s[2]
}
INITIAL {
x = 42.0
s[0] = 0.1
s[1] = -1.0
z[0] = 0.7
z[1] = 0.8
z[2] = 0.9
}
BREAKPOINT {
SOLVE dX METHOD cnexp
}
DERIVATIVE dX {
x' = (s[0] + s[1])*(z[0]*z[1]*z[2])*x
}
|
e856fafecefd2d97e3d569073abc80f962cec7547f83e059b87c41cf7d38f2d8 | NEURON | 315 | 26 | NEURON {
SUFFIX locals
}
PARAMETER {
a = -1.0
}
FUNCTION get_a() { LOCAL a
a = 32.0
VERBATIM
_lget_a = _la;
ENDVERBATIM
}
FUNCTION get_b() { LOCAL a, b
a = -1.0
b = 32.0
{ LOCAL a
a = 100.0
b = b + a
VERBATIM
_lget_b = _lb;
ENDVERBATIM
}
}
|
f433aa6512767cee6d390b388d25f750c4653fb47739996dae723cd72dd599fe | NEURON | 316 | 30 | NEURON {
SUFFIX derivimplicit_array
RANGE z
}
ASSIGNED {
z[3]
}
STATE {
x
s[2]
}
INITIAL {
x = 42.0
s[0] = 0.1
s[1] = -1.0
z[0] = 0.7
z[1] = 0.8
z[2] = 0.9
}
BREAKPOINT {
SOLVE dX METHOD derivimplicit
}
DERIVATIVE dX {
x' = (s[0] + s[1])*(z[0]*z[1]*z[2])*x
}
|
b4406cb16cf2d9082cd74b2c4866bb6603392c15ab36895e86913025660e77db | NEURON | 328 | 33 | NEURON {
SUFFIX top_local
NONSPECIFIC_CURRENT il
RANGE y
}
ASSIGNED {
y
il
}
LOCAL gbl
INITIAL {
gbl = 2.0
}
BREAKPOINT {
if(t > 0.33) {
gbl = 3.0
}
y = gbl
il = 0.0000001 * (v - 10.0)
}
FUNCTION get_gbl() {
get_gbl = gbl
}
PROCEDURE set_gbl(value) {
gbl = ... |
47134b1cf5139bb32fa99ab1592235b0a1603bceba915d59f48594e5040410df | NEURON | 341 | 33 | NEURON {
POINT_PROCESS SnapSyn
RANGE e, i
NONSPECIFIC_CURRENT i
}
UNITS {
(nA) = (nanoamp)
(mV) = (millivolt)
(uS) = (microsiemens)
}
PARAMETER {
e = 10 (mV)
}
ASSIGNED {
v (mV)
i (nA)
g (uS)
}
INITIAL {
g=0
}
BREAKPOINT {
i = g*(v - e)
}
NET_RECEIVE(weight (uS)) {
... |
854354c345363bc124b006073c239103976d56d8e6371b48f3e4f28ae9990e8e | NEURON | 357 | 28 | NEURON {
SUFFIX two_radii
NONSPECIFIC_CURRENT il
RANGE inv
}
ASSIGNED {
il
inv
diam
area
}
INITIAL {
inv = 1.0 / (square_diam() + area)
}
BREAKPOINT {
il = (square_diam() + area) * 0.001 * (v - 20.0)
}
FUNCTION square_diam() {
square_diam = diam * diam
}
FUNCTION square_area... |
4bf488fc4d484e11a7f9ed7047d2a6999535a5c7790c2ad3f31ec3781a18094b | NEURON | 377 | 22 | : ggap.mod
: This is a conductance based gap junction model rather
: than resistance because Traub occasionally likes to
: set g=0 which of course is infinite resistance.
NEURON {
POINT_PROCESS gGapPar
RANGE g, i, vgap
ELECTRODE_CURRENT i
}
PARAMETER { g = 1e-10 (1/megohm) }
ASSIGNED {
v (millivolt)
vgap (millivo... |
7f6235d30a9bc251f87e71b516546f3c6f4f4d08daa16a656f833d9e92864bd3 | NEURON | 383 | 40 | NEURON {
SUFFIX X2Y
RANGE X, Y, c1, c2
NONSPECIFIC_CURRENT il
}
STATE {
X
Y
}
ASSIGNED {
il
i
c1
c2
}
BREAKPOINT {
SOLVE state METHOD sparse
il = i
}
INITIAL {
X = 0
Y = 1
c1 = 0.0
c2 = 0.0
}
KINETIC state {
rates()
~ X <-> Y (c1, c2)
i = (f_f... |
ad5de939b708971b37986dc43048d9f108e46e403d6080dc5afb4ed98b60462b | NEURON | 397 | 41 | NEURON {
SUFFIX procedures
RANGE x
}
ASSIGNED {
x
}
FUNCTION identity(v) {
identity = v
}
PROCEDURE set_x_42() {
set_x_a(42)
}
PROCEDURE set_x_a(a) {
x = a
}
PROCEDURE set_a_x() {
LOCAL a
a = x
}
PROCEDURE set_x_v() {
x = v
}
PROCEDURE set_x_just_v() {
x = identity(v)
}
P... |
2c8ba6eeff09f54e979290a44f786baeb51172752da16cadeeb0c152e5956214 | NEURON | 410 | 41 | NEURON {
POINT_PROCESS point_procedures
RANGE x
}
ASSIGNED {
x
}
FUNCTION identity(v) {
identity = v
}
PROCEDURE set_x_42() {
set_x_a(42)
}
PROCEDURE set_x_a(a) {
x = a
}
PROCEDURE set_a_x() {
LOCAL a
a = x
}
PROCEDURE set_x_v() {
x = v
}
PROCEDURE set_x_just_v() {
x = ide... |
978e5b35e3a93d7727c6bb350cde4e191e1b36285769d616ef22e97fb6a24e3e | NEURON | 414 | 36 | NEURON {
SUFFIX side_effects
RANGE x, forward_flux, backward_flux
NONSPECIFIC_CURRENT il
}
ASSIGNED {
il
x
forward_flux
backward_flux
}
STATE {
X
Y
}
INITIAL {
X = 1
Y = 2
}
BREAKPOINT {
SOLVE state METHOD sparse
il = forward_flux - backward_flux
}
KINETIC state... |
d7eaf0289ac274e5f753f5392a957dc48571f81013972b340211a1de76c2e239 | NEURON | 436 | 38 | NEURON {
SUFFIX heat_eqn_global
RANGE x
}
PARAMETER {
mu = 2.0
vol = 0.01
}
ASSIGNED {
x
}
STATE {
X
}
INITIAL {
if(x < 0.5) {
X = 1.0
} else {
X = 0.0
}
}
BREAKPOINT {
SOLVE state METHOD sparse
}
KINETIC state {
COMPARTMENT vol {X}
LONGITUDINAL_DIFF... |
ad2e20d202870cf7329790f825da272b1a8c78d31a3037fcf154e2c3998259b8 | NEURON | 437 | 38 | NEURON {
SUFFIX heat_eqn_scalar
RANGE x
}
ASSIGNED {
x
mu
vol
}
STATE {
X
}
INITIAL {
mu = 1.1
vol = 0.01
if(x < 0.5) {
X = 1.0
} else {
X = 0.0
}
}
BREAKPOINT {
SOLVE state METHOD sparse
}
KINETIC state {
COMPARTMENT vol {X}
LONGITUDINAL_DIF... |
c63c60551481f1bb9ac936ec0ce59b37530d5745254e24467016e794836afcf1 | NEURON | 454 | 42 | NEURON {
POINT_PROCESS ExpSyn
RANGE tau, e, i
NONSPECIFIC_CURRENT i
}
UNITS {
(nA) = (nanoamp)
(mV) = (millivolt)
(uS) = (microsiemens)
}
PARAMETER {
tau = 0.1 (ms) <1e-9,1e9>
e = 0 (mV)
}
ASSIGNED {
v (mV)
i (nA)
}
STATE {
g (uS)
}
INITIAL {
g = 0
}
BREAKPOINT {
... |
65756e571c08b1901a449ea505928c30dffc8b460fa3e2aaa65cca8ed7567b99 | NEURON | 459 | 42 | NEURON {
POINT_PROCESS ExpSyn2
RANGE tau, e, i
NONSPECIFIC_CURRENT i
}
UNITS {
(nA) = (nanoamp)
(mV) = (millivolt)
(uS) = (microsiemens)
}
PARAMETER {
tau = 0.1 (ms) <1e-9,1e9>
e = 0 (mV)
}
ASSIGNED {
v (mV)
i (nA)
}
STATE {
g (uS)
}
INITIAL {
g=0
}
BREAKPOINT... |
3b3a3355a421287a8713a093f676120ffddd6d006d04d076676478aac514fa5c | NEURON | 476 | 40 | NEURON {
SUFFIX heat_eqn_thread_vars
RANGE x
GLOBAL mu, vol
THREADSAFE
}
ASSIGNED {
x
mu
vol
}
STATE {
X
}
INITIAL {
mu = 1.1
vol = 0.01
if(x < 0.5) {
X = 1.0
} else {
X = 0.0
}
}
BREAKPOINT {
SOLVE state METHOD sparse
}
KINETIC state {
C... |
576bfbbae0b42032668515998e51b8f5e6e2a62622455b33bc19894b7d0e09a2 | NEURON | 502 | 37 | : Example of MOD file using sparse solver
NEURON {
SUFFIX glia
RANGE Aalfa, Valfa, Abeta, Vbeta
}
PARAMETER {
Aalfa = 353.91 ( /ms)
Valfa = 13.99 ( /mV)
Abeta = 1.272 ( /ms)
Vbeta = 13.99 ( /mV)
n1 = 5.422
n4 = 0.738
}
STATE {
C1
C2
}
BREAKPOINT {
SOLVE kstates METHOD sp... |
a23d5204334d910bd013c5998fcb1aaf0514c7262c4cf03342fe61eee683ce2e | NEURON | 514 | 43 | NEURON {
SUFFIX minipump
}
PARAMETER {
volA = 1e9
volB = 1e9
volC = 13.0
kf = 3.0
kb = 4.0
run_steady_state = 0.0
}
STATE {
X
Y
Z
}
INITIAL {
X = 40.0
Y = 8.0
Z = 1.0
if(run_steady_state > 0.0) {
SOLVE state STEADYSTATE sparse
}
}
BREAKPOINT {
... |
b754ca9a3de2faaf583bedf3d0d70f6e0c116f9057ee90d8d4d8a54368166ffd | NEURON | 562 | 47 | NEURON {
SUFFIX heat_eqn_array
RANGE x
}
DEFINE N 4
PARAMETER {
kf = 0.0
kb = 0.0
}
ASSIGNED {
x
mu[N]
vol[N]
}
STATE {
X[N]
}
INITIAL {
FROM i=0 TO N-1 {
mu[i] = 1.0 + i
vol[i] = 0.01 / (i + 1.0)
if(x < 0.5) {
X[i] = 1.0 + i
} else ... |
bcc0afdbe28493266942b31727a610396fe8d072ad97a61375fddad2643b0140 | NEURON | 582 | 36 | NEURON {
SUFFIX pointer_in_double
THREADSAFE
}
ASSIGNED {
ptr
}
VERBATIM
struct SomeDouble {
SomeDouble(double _value) : _value(_value) {}
double value() const {
return _value;
}
double _value;
};
static std::vector<SomeDouble> some_doubles;
ENDVERBATIM
INITIAL {
VERBATIM
some_doubles.rese... |
e2aeae8defb290db2713786665c32b6d85eabfe44511d3cba7b555791494e967 | NEURON | 596 | 60 | NEURON {
SUFFIX localize_arguments
USEION na READ ina, nai
RANGE x
GLOBAL g
}
ASSIGNED {
x
g
ina
nai
}
STATE {
s
}
PARAMETER {
p = 42.0
}
FUNCTION id_v(v) {
id_v = v
}
FUNCTION id_nai(nai) {
id_nai = nai
}
FUNCTION id_ina(ina) {
id_ina = ina
}
FUNCTION id_x(x) ... |
e24358ad4f9516c19cd51f3d0079c0660f7252a3aae49b544c9f9cd5a35be26c | NEURON | 611 | 43 | NEURON {
SUFFIX scalar
}
UNITS {
(um) = (micron)
}
PARAMETER {
freq = 10
a = 5
v1 = -1
v2 = 5
v3 = 15
v4 = 0.8
v5 = 0.3
r = 3
k = 0.2
}
STATE {var1 var2 var3 var4}
INITIAL {
var1 = v1
var2 = v2
var3 = v3
}
BREAKPOINT {
SOLVE equation METHOD derivimplicit
}
... |
c89c83296d054e90e067ebf84291f543b00c64d9e14521581a258a46534a225a | NEURON | 634 | 44 | NEURON {
SUFFIX tbl
NONSPECIFIC_CURRENT i
RANGE g, v1, v2
GLOBAL k, d, c1, c2
}
PARAMETER {
k = .1
d = -50
c1 = 1
c2 = 2
}
ASSIGNED {
g
i
v
sig
v1
v2
}
BREAKPOINT {
sigmoidal(v)
g = 0.001 * sig
i = g*(v - 30.0)
}
PROCEDURE sigmoidal(v) {
TABLE ... |
67179d0dc4ac7492621329929d88da59cfbedc959660cb0871dfdbe6bd26dc90 | NEURON | 655 | 44 | NEURON {
POINT_PROCESS tbl_point_process
NONSPECIFIC_CURRENT i
RANGE g, v1, v2
GLOBAL k, d, c1, c2
}
PARAMETER {
k = .1
d = -50
c1 = 1
c2 = 2
}
ASSIGNED {
g
i
v
sig
v1
v2
}
BREAKPOINT {
sigmoidal(v)
g = 0.001 * sig
i = g*(v - 30.0)
}
PROCEDURE sigm... |
d4c14c061ad2ecad7d444b71031bbe487edcf397d65557af2bbeebcf3b9eccba | NEURON | 679 | 51 | NEURON {
SUFFIX threading_effects
NONSPECIFIC_CURRENT il
RANGE y, z
GLOBAL g_v1, g_w, g_arr
THREADSAFE
}
ASSIGNED {
y
z
g_w
g_arr[3]
il
}
INITIAL {
g_w = 48.0
g_v1 = 0.0
g_arr[0] = 10.0 + z
g_arr[1] = 10.1
g_arr[2] = 10.2
y = 10.0
}
BREAKPOINT {
if(... |
6dc66dabf9b95080865395eda202e1248c3d254516bb7e8fb0089c7de75e4c1d | NEURON | 694 | 38 | : POINTER variables are part of the `dparam` array. They're also "known" to
: NEURON and it recomputes their index into `dparam`. Naturally, the two don't
: have to agree, but if they don't it's a bug.
:
: These tests check that the index in MOD files agrees with the index used
: inside of NEURON.
NEURON {
SUFFIX ... |
6b6affd68b7180dc8a349de4382d1db6cb3ede5bc4b33207c5c82fb65de06cb2 | NEURON | 698 | 56 | NEURON {
SUFFIX heat_eqn_function
RANGE x
GLOBAL g_mu, g_vol
THREADSAFE
}
ASSIGNED {
x
g_mu
g_vol
}
STATE {
X
}
INITIAL {
g_mu = 1.1
g_vol = 0.01
if(x < 0.5) {
X = 1.0
} else {
X = 0.0
}
}
BREAKPOINT {
SOLVE state METHOD sparse
}
FUNCTION fac... |
aba7f5528d896e2524e4ecaa5a9e56b3898afb6333d4c6d27140328c212f7aac | NEURON | 699 | 38 | : POINTER variables are part of the `dparam` array. They're also "known" to
: NEURON and it recomputes their index into `dparam`. Naturally, the two don't
: have to agree, but if they don't it's a bug.
:
: These tests check that the index in MOD files agrees with the index used
: inside of NEURON.
NEURON {
POINT_P... |
3c7cbfa13478920af04604d1c23a797d25560c3764a43922b0588bff0d9b6552 | NEURON | 745 | 56 | : Collection of tricky variable names.
NEURON {
SUFFIX variable_names
}
STATE {
is
be
count
as
del
elif
in
pass
alpha
beta
gamma
delta
epsilon
zeta
eta
theta
iota
kappa
lambda
mu
nu
xi
omicron
: pi
chi
psi
... |
ebb77b8a4bf8feb0a5c7d6595f1d6ff997b85e8daf131315343ac0664dd75cae | NEURON | 784 | 51 | : simple first-order model of calcium dynamics
NEURON {
SUFFIX cadyn
USEION ca READ cai,ica WRITE cai
RANGE ca
GLOBAL depth,cainf,taur
}
UNITS {
(molar) = (1/liter)
(mM) = (milli/liter)
(um) = (micron)
(mA) = (milliamp)
(msM) = (ms mM)
FARADA... |
a939547e23b623fac6ace316b4bf22d01e164bb62bdc897206ac9fc21455baef | NEURON | 797 | 49 | COMMENT
Test for derivimplicit solver with sympy and Eigen. Based on cacum.mod
ENDCOMMENT
NEURON {
SUFFIX cacum
USEION ca READ ica WRITE cai
RANGE depth, tau, cai0
}
UNITS {
(mM) = (milli/liter)
(mA) = (milliamp)
F = (faraday) (coulombs)
}
PARAMETER {
depth = 1 (nm) : assume volume = area*depth
tau = 10 (ms)... |
3cae0f553ef431a23c8cdd32cde5274fe256b0f2ce6151af9948d9c74586e8aa | NEURON | 833 | 36 | // This function is used to balance the membrane potential to v_init
// written by Yiota Poirazi, July 2001, poirazi@LNC.usc.edu
// modified by Alexandra Tzilivaki, 2015 alexandra_tzilivaki@imbb.forth.gr
proc current_balanceFS() {
finitialize($1)
fcurrent()
printf("Balancing each compartment to %d mV\n", $1)
... |
96ce3ce1fbe9703744134e94bd3813dae80cf6c25b0ede6fe174607ed707b7b2 | NEURON | 865 | 52 | : simple first-order model of calcium dynamics
NEURON {
SUFFIX cadynin
USEION ca READ cai,ica WRITE cai
RANGE ca
GLOBAL depth,cainf,taur
}
UNITS {
(molar) = (1/liter)
(mM) = (milli/liter)
(um) = (micron)
(mA) = (milliamp)
(msM) = (ms mM)
FARADAY... |
6442de26c6651c2ba38519a8e251b5424d88aba92f93a8d4434cf360b48f26af | NEURON | 898 | 69 | NEURON {
POINT_PROCESS watchtest
NONSPECIFIC_CURRENT i
GLOBAL ena, ek, erev, gna, gk, gpas
RANGE e, g
}
UNITS {
(mV) = (millivolt)
(nA) = (nanoamp)
(umho) = (micromho)
}
PARAMETER {
ena = 50 (mV)
ek = -80 (mV)
erev = -65 (mV)
gna = 0.1 (umho)
gk = 0.03 (umho)
gpas = 0.0001 (umho)
}
ASSIGNED... |
0f9f6ae6190f23d554c44a77eac07f55ce619243d8a45b7748ab394c3a42af77 | NEURON | 907 | 67 | COMMENT
Two state kinetic scheme which reproduces the concentration change of dopamine.
ENDCOMMENT
NEURON {
POINT_PROCESS concDA
RANGE tau1, tau2, e
RANGE concentration
NONSPECIFIC_CURRENT i
}
UNITS {
(nA) = (nanoamp)
(mV) = (millivolt)
}
PARAMETER {
tau1 = 400 (ms) <1e-9,1e9>
tau2 = 300 (ms) <1e-9,1e9>
... |
7c19b496418c3620935904612976316da08316881ca8c1269ad4b4ea636a65b4 | NEURON | 912 | 67 | COMMENT
Two state kinetic scheme which reproduces the concentration change of dopamine.
ENDCOMMENT
NEURON {
POINT_PROCESS concDA
RANGE tau1, tau2, e
RANGE concentration
NONSPECIFIC_CURRENT i
}
UNITS {
(nA) = (nanoamp)
(mV) = (millivolt)
}
PARAMETER {
tau1 = 400 (ms) <1e-9,1e9>
tau2 = 300 (ms) <1e-9,1e9>
... |
138bfc0de0e243ef5c13555e0c1a92918a3a94c8922485e71cf8275b086ca7c2 | NEURON | 1,051 | 55 | COMMENT
ipulse3.mod
Generates a current pulse when it receives an input event.
User specifies dur (pulse duration) and amp (pulse amplitude).
Ignores events that arrive during an ongoing pulse.
version 1.0 NTC
author: Ted Carnevale
ENDCOMMENT
NEURON {
POINT_... |
3ec1463d5a36be8f056dc9bb55f5f544a872f39b57db8e444f75f33aae3dc555 | NEURON | 1,061 | 97 | : Slowly inactivating K+ channel
NEURON {
SUFFIX IKs
USEION k READ ki, ko WRITE ik
RANGE gKsbar, ik, gk
}
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(mM) = (milli/liter)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
v (mV)
dt (ms)
gKsbar= 0.00014 (mho/cm2) <0,1e9>
}
STATE {
a b
}
... |
5c3dde3ce31c59391786db18a5e10e8d33ddbaf2795d7ded130e3dd4e021b04a | NEURON | 1,063 | 97 | : Slowly inactivating K+ channel
NEURON {
SUFFIX IKscb
USEION k READ ki, ko WRITE ik
RANGE gKsbar, ik, gk
}
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(mM) = (milli/liter)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
v (mV)
dt (ms)
gKsbar= 0.00014 (mho/cm2) <0,1e9>
}
STATE {
a b
}
... |
87b06c835ba36968ef826b3db8eb474cf19a0a26a8d4a5e5fa8caf97c53c802c | NEURON | 1,063 | 64 | COMMENT
Two state kinetic scheme which reproduces the concentration change of acetylcholine in response to spiking in cholinergic interneuron. The time constants, tau1 and tau2 were fitted to reproduce the same concentration as in Blackwell et al. 2019 with estimated input.
ENDCOMMENT
NEURON {
POINT_PROCESS concHld... |
97c36285c46e4a8e22ce67aea972d77e9d7ef83a389b0bd0f348e310b039ad19 | NEURON | 1,063 | 97 | : Slowly inactivating K+ channel
NEURON {
SUFFIX IKscr
USEION k READ ki, ko WRITE ik
RANGE gKsbar, ik, gk
}
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(mM) = (milli/liter)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
v (mV)
dt (ms)
gKsbar= 0.00014 (mho/cm2) <0,1e9>
}
STATE {
a b
}
... |
eb2506894a06d10859139619bff3172165ba71828bad64ff183c415fa5057a23 | NEURON | 1,069 | 103 | : Delayed rectifier K+ channel
NEURON {
SUFFIX kdr
USEION k READ ki, ko WRITE ik
RANGE gkdrbar, ik, gk
}
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
v (mV)
dt (ms)
gkdrbar= 0.0338 (mho/cm2) <0,1e9>
}
STATE {
n
}
ASSIGNED {
ik (mA/cm2)
inf
t... |
af6ceab76b01c32437dbeccbece440e7e4db6729c5de67bce90a84ad0a0ffba3 | NEURON | 1,071 | 103 | : Delayed rectifier K+ channel
NEURON {
SUFFIX kdrcb
USEION k READ ki, ko WRITE ik
RANGE gkdrbar, ik, gk
}
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
v (mV)
dt (ms)
gkdrbar= 0.0338 (mho/cm2) <0,1e9>
}
STATE {
n
}
ASSIGNED {
ik (mA/cm2)
inf
... |
f5d1431026eba750d2dab577aeb2e8f143271864dcb7f59352c23d4b4d47a338 | NEURON | 1,071 | 103 | : Delayed rectifier K+ channel
NEURON {
SUFFIX kdrcr
USEION k READ ki, ko WRITE ik
RANGE gkdrbar, ik, gk
}
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
v (mV)
dt (ms)
gkdrbar= 0.0338 (mho/cm2) <0,1e9>
}
STATE {
n
}
ASSIGNED {
ik (mA/cm2)
inf
... |
b742b21a2ed1071d552470ddd0b35150a572267b3bf2b91f0faecde2a3070ca7 | NEURON | 1,074 | 64 | COMMENT
Two state kinetic scheme which reproduces the concentration change of acetylcholine in response to spiking in cholinergic interneuron. The time constants, tau1 and tau2 were fitted to reproduce the same concentration as in Blackwell et al. 2019 with estimated input.
ENDCOMMENT
NEURON {
POINT_PROCESS concACh... |
fc385a35bddb7b297da5bebae2cd239d845aa4eadbe3b43add3a8a4a4d8c203d | NEURON | 1,133 | 76 | TITLE H-current that uses Na ions
: Updated to use Cvode by Yiota Poirazi 12/1/2005
NEURON {
SUFFIX h
RANGE gbar,vhalf, K, taun, ninf, g, ihi
USEION hi READ ehi WRITE ihi VALENCE 1
}
UNITS {
(um) = (micrometer)
(mA) = (milliamp)
(uA) = (microamp)
(mV) = (millivolt)
(pmho) = (picomho)
(mmh... |
32a771fbfa0b169c91b9af47528322599cc978d49aef982ec0a54b8a801d8d2c | NEURON | 1,179 | 90 | TITLE K-D channel
: M.Migliore jun 2006
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek (mV) : must be explicitely def. in hoc
celsius (degC)
gkdbar=.0 (mho/cm2)
vhalfn=-33 (mV)
a0n=0.005 (/ms)
zetan=3 (1)
gmn=0.7 (1)
nmax=2 (1)
q10=1... |
a149b57a06e83a71a115ead92ea40cfe299a4e116a738ef61a5f825a00ba91fd | NEURON | 1,189 | 67 | TITLE KCNQ/M current from striatal medium spiny neurons, used for ch. interneuron.
:KCNQ_CH.MOD
:
: 11/3/2003
NEURON {
SUFFIX kcnq_ch
USEION k READ ek WRITE ik
RANGE ik, ek, g, gbar
GLOBAL a0, b0, ah, bh, ac, bc
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
... |
027a866b74572a62ad136bd9a90ea5be0b1e6b7867c8d7ffe44ea5c4961bb098 | NEURON | 1,230 | 92 | TITLE K-DR channel
: from Klee Ficker and Heinemann
: modified to account for Dax et al.
: M.Migliore 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek (mV) : must be explicitely def. in hoc
celsius (degC)
gkdrbar=.003 (mho/cm2)
vhalfn=13 (mV)
a0n=0.02 (/ms)
zeta... |
0a81be512e385ec3263b74a49bdf2dfdbb30e6ec5be24408ca8cfc389b0c5d32 | NEURON | 1,232 | 104 | : iC fast Ca2+/V-dependent K+ channel
NEURON {
SUFFIX iCcb
USEION k READ ki, ko WRITE ik
USEION ca READ cai
RANGE ik, gk, gkcbar
}
UNITS {
(mM) = (milli/liter)
(mA) = (milliamp)
(mV) = (millivolt)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
v (mV)
dt (ms)
c... |
4fe14f89a036cc2c9de171150cf3b37cbabc77b09fd16a047a5641046c579ed4 | NEURON | 1,232 | 104 | : iC fast Ca2+/V-dependent K+ channel
NEURON {
SUFFIX iCin
USEION k READ ki, ko WRITE ik
USEION ca READ cai
RANGE ik, gk, gkcbar
}
UNITS {
(mM) = (milli/liter)
(mA) = (milliamp)
(mV) = (millivolt)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
v (mV)
dt (ms)
c... |
b940c20ee7752d8ef657fb5dd24e05f7944b6ec296d6ce76b428e7f3820247ae | NEURON | 1,232 | 104 | : iC fast Ca2+/V-dependent K+ channel
NEURON {
SUFFIX iCcr
USEION k READ ki, ko WRITE ik
USEION ca READ cai
RANGE ik, gk, gkcbar
}
UNITS {
(mM) = (milli/liter)
(mA) = (milliamp)
(mV) = (millivolt)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
v (mV)
dt (ms)
c... |
d0f700d5afddeaae1cec72c1bee316981964b1bc881490651dbe1cc4a76a3f94 | NEURON | 1,250 | 49 | : lfp.mod
COMMENT
LFPsim - Simulation scripts to compute Local Field Potentials (LFP) from cable compartmental models of neurons and networks implemented in NEURON simulation environment.
LFPsim works reliably on biophysically detailed multi-compartmental neurons with ion channels in some or all compartments.
Last u... |
c47cd4a065be5b7d5e7d98b419bcce93ec4fdca229cb9d1b0c0f7606b7fb8123 | NEURON | 1,254 | 92 | : KV2_CH.MOD
: KV2 for Cholinergic Interneuron
NEURON {
SUFFIX kv2_ch
USEION k READ ek WRITE ik
RANGE g, ik, an, bn, gbar
}
UNITS {
(mV) = (millivolt)
(S) = (siemens)
(mA) = (milliamp)
}
PARAMETER {
gbar = 1 (S/cm2)
}
ASSIGNED {
v (mV)
ek (mV)
g (S/cm2)
ik (mA/cm2)
an (1/ms)
bn (1/ms)
kf1 (1/ms)
kb1... |
4e8087d12069c4b792b476cf08a4e20e216f0b12b42c517bb038da60190ea8c8 | NEURON | 1,255 | 77 | TITLE H-current that uses Na ions
: Updated to use Cvode by Yiota Poirazi 12/1/2005
NEURON {
SUFFIX hcb
RANGE gbar,vhalf, K, taun, ninf, g, ihi
USEION hi READ ehi WRITE ihi VALENCE 1
}
UNITS {
(um) = (micrometer)
(mA) = (milliamp)
(uA) = (microamp)
(mV) = (millivolt)
(pmho) = (picomho)
(mmho... |
23e26a9c090b216d393882b60e92ac378d594390a1ed2adaedc6559584b961a6 | NEURON | 1,267 | 69 | : simple first-order model of calcium dynamics
: Modified on Feb 22th 2018 based on Boening et al 2014.
NEURON {
SUFFIX cadyn_new
USEION ca READ cai,ica WRITE cai
RANGE ca
GLOBAL depth,cainf,taur
}
UNITS {
(molar) = (1/liter)
(mM) = (milli/liter)
(um) = (micron)
(mA) = (milliamp)
(msM) = (... |
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