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a1ad367c13990dd91c9a34ee04b878c4256509c32038cd98440feac2dd6d5d21
Shell
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2
#!/usr/bin/env bash
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31
4
#!/bin/bash pytest -s tests/
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31
1
docker build -t bisweb/devel .
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31
1
docker build -t bisweb/tools .
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Shell
33
2
nrnivmodl opt_module/mechanisms
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34
2
mkdir cTBS_30nA_10pc_9000p_seed1
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Shell
37
1
./premake/generate_project_gmake2.sh
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39
2
#!/bin/sh autoreconf --force --install
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44
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#!/bin/bash cd src ./compile_all.sh cd ..
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45
4
#!/bin/bash gulp package -l "darwin,linux"
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49
3
#!/bin/bash python ../CREaTor.py -i example.pkl
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49
5
#!/bin/bash source /start_jupyter.sh exec "$@"
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51
4
#!/bin/sh cmake ../../ -DCMAKE_BUILD_TYPE=Debug
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Shell
52
1
hugo --cleanDestinationDir --minify --panicOnWarning
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Shell
53
1
Rscript setting3_runScDD.R > log_setting3_runScDD.txt
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Shell
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Rscript setting2_runScDD.R > log_setting2_runScDD.txt
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Shell
53
1
docker build -t bisweb/devel-gpu -f Dockerfile.gpu .
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Shell
53
4
#!/bin/sh cmake ../../ -DCMAKE_BUILD_TYPE=Release
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Shell
53
1
Rscript setting1_runScDD.R > log_setting1_runScDD.txt
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Shell
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1
/c/unix/innosetup5/ISCC.exe build/var/biselectron.iss
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Shell
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Rscript setting2_runDESeq2.R > log_setting2_runDESeq2.txt
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Shell
57
1
Rscript setting3_runDESeq2.R > log_setting3_runDESeq2.txt
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Shell
57
1
Rscript setting1_runDESeq2.R > log_setting1_runDESeq2.txt
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Shell
59
1
ps aux | grep app.py | sed -E 's/^[^0-9]+([0-9]+).*$/\1/g'
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Shell
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#!/bin/bash bsub -Is -q short -M 8 -W 2:00 -n 5 /bin/bash
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Shell
61
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#!/bin/bash make CXX=g++ CC=gcc make plugins CXX=g++ CC=gcc
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Shell
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Rscript setting3_unLimmavoom.R > log_setting3_runLimmavoom.txt
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Shell
63
5
#!/bin/sh find . -name \#*.* -delete find . -name *~ -delete
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Shell
63
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Rscript setting2_runLimmavoom.R > log_setting2_runLimmavoom.txt
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Rscript setting3_runLimmavoom.R > log_setting3_runLimmavoom.txt
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Rscript setting1_runLimmavoom.R > log_setting1_runLimmavoom.txt
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Shell
64
4
#!/bin/bash cd /data/client && \ npm install && \ grunt
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#!/bin/bash python -m main_ec select_samples_for_ec_predict.fasta
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Shell
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#!/bin/bash bsub -Is -q gpu-medium -M 16 -W 3:00 -n 5 /bin/bash
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Shell
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2
pip install -e ../convert_allen_space pip install -e ../rpc_interface
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#!/bin/bash sed -i "s/doi = \"10/doi = \"https:\/\/doi.org\/10/g" $1
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Shell
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uglifyjs alphafold-viz.js -o min/alphafold-viz.min.js --compress --mangle
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Shell
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#!/bin/sh mount -t debugfs none_debugs /sys/kernel/debug modprobe usbmon
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Shell
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#!/bin/bash for x in ./*.tif; do mkdir "${x%.*}" && mv "$x" "${x%.*}" done
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Shell
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Rscript setting4_all_markers_runScDD.R > log_setting4_all_markers_runScDD.txt
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Shell
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1
Rscript setting4_all_markers_runDESeq2.R > log_setting4_all_markers_runDESeq2.txt
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#!/bin/bash # TODO : Run a Python code to use codecarbon package and call the API
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#!/bin/bash rm -rf {lm,util,util/double-conversion}/*.o bin/{query,build_binary}
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#!/bin/sh cmake ../../ -DCMAKE_CXX_FLAGS=-pg -DCMAKE_BUILD_TYPE=Release && make
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Shell
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#calculate q value species=$1 R CMD BATCH {file_pathway}/$species/Rscript/qvalue.R
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Shell
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#!/bin/bash set -xe THIS=$(dirname "$0") pushd ${THIS}/../ make -C doc/ dist popd
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Shell
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Rscript setting4_all_markers_runLimmavoom.R > log_setting4_all_markers_runLimmavoom.txt
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Shell
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cp -r ./template cTBS_30nA_10pc_9000p_seed1 cp -r ./template cTBS_30nA_10pc_3000p_seed1
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Shell
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$PYTHON setup.py install --single-version-externally-managed --record=record.txt # Python
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#!/usr/bin/env sh ./build/tools/caffe train --solver=examples/mnist/lenet_solver.prototxt
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#!/bin/bash # compile custom operators cd pointnet2 python setup.py install --user cd ..
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Shell
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#!/bin/sh # Run COBA tests cd coba_test ./run_coba_test.sh && ./run_coba_parallel_test.sh
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Shell
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set -ex sudo -H pip install visdom sudo -H pip install dominate sudo -H pip install moviepy
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Shell
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#!/usr/bin/env bash python -m pyinotify -c 'make html' -r -e IN_CLOSE_WRITE source ../csbdeep
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Shell
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#!/usr/bin/env bash # Starts the bisweb MCP server. exec node "$(dirname "$0")/bisweb_mcp.js"
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Shell
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#!/bin/bash cd ~/nf/nf-rtime . /opt/miniconda3/etc/profile.d/conda.sh conda activate rt spyder
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#! /bin/bash find /project_cephfs/3022051.01/sessions/ -type d -mtime +30 -exec rm -rf {} \;
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#!/bin/bash $TRINITY_HOME/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl $*
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Shell
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#!/usr/bin/env bash set -exu exp_dir=$1 CUDA_VISIBLE_DEVICES=1 python -m src.test -e $exp_dir
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#!/usr/bin/env bash set -exu exp_dir=$1 CUDA_VISIBLE_DEVICES=0,3 python -m src.dev -e $exp_dir
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Shell
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R CMD BATCH /dcs04/lieber/lcolladotor/pilotLC_LIBD001/locus-c/code/analyses_sn/05_markerDetection.R
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#!/bin/bash cd ~/nf/nf-rtime . /opt/miniconda3/etc/profile.d/conda.sh conda activate rt jupyter lab
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#!/bin/bash FILENAME=$1 RBP=$2 awk -v r=$RBP '{print $1"\t"$2"\t"$3"\t"r"\t"$5"\t"$6}' $FILENAME
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#!/bin/bash wget https://github.com/jsbroks/dextr-keras/releases/download/v1.0.0/dextr_pascal-sbd.h5
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#!/bin/bash # TODO: Error check matlab -nodisplay -nodesktop -nosplash -r "runExpt('${1}', ${2});exit"
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Shell
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echo 'export BASALGANGLIADATA=~/Documents/Repositories/BasalGangliaData/' >> ~/.bashrc source ~/.bashrc
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#!/bin/sh ./sim_isp_orig --out /tmp/out --simtime 10 ./sim_background --dir /tmp/ --tau 10 --simtime 10
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cd /home/knight/hoycw/PRJ_Error/scripts/ matlab -nosplash -nojvm -nodisplay -r cleaning_preproc_bob_error
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Shell
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#!/bin/bash docker run \ --rm -it \ -v $PWD:/dtox_robustness \ ghcr.io/csbg/dtox-container:1.0.0 $@
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#!/usr/bin/env sh ./build/tools/caffe train \ --solver=models/bvlc_reference_caffenet/solver.prototxt
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#!/usr/bin/env sh ./build/tools/caffe train \ --solver=examples/mnist/mnist_autoencoder_solver.prototxt
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# run from base protein_generator directory python inference.py --input_json examples/reduced_aa_args.json
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Shell
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#!/usr/bin/env sh ./build/tools/caffe train \ --solver=examples/mnist/lenet_consolidated_solver.prototxt
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#source activate TDNODE python src/analysis/compound.py --config experiments/analysis/compound/compound.yaml
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Shell
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python ./inference.py \ --sampler cleavage_foldswitch \ --input_json ./examples/multistate_args.json
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#!/bin/bash ./build/tools/caffe train \ --solver=examples/mnist/mnist_autoencoder_solver_adagrad.prototxt
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Shell
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#!/bin/bash docker run \ --rm -it \ -v $PWD:/pnet_robustness \ ghcr.io/csbg/r_pnet_robustness:1.0.0 $@
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#!/bin/bash grep -L "Finished prediction" *.out | awk -F. '{print "sbatch " $1".slurm"}' > resubmit_failed.sh
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Shell
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#!/bin/bash ./build/tools/caffe train \ --solver=examples/mnist/mnist_autoencoder_solver_nesterov.prototxt
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Shell
111
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#!/bin/bash set -ve git submodule init trinity_ext_sample_data git submodule update trinity_ext_sample_data
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Shell
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#!/bin/sh wget http://ai.stanford.edu/~acoates/stl10/stl10_binary.tar.gz tar -xf --strip=1 stl10_binary.tar.gz
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Shell
111
4
./emsdk activate clang-e1.38.31-64bit ./emsdk activate emscripten-1.38.31 ./emsdk activate sdk-e1.38.31-64bit
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#!/bin/bash . ./globalvars.sh SRC_DIR=$OUT_DIR/src mkdir -p $SRC_DIR echo src_dir: $SRC_DIR cp -r * $SRC_DIR
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# Environment Variables - change python path such that tf_spiking is recognized as module export PYTHONPATH=$PWD
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#!/usr/bin/env sh TOOLS=./build/tools $TOOLS/caffe train --solver=examples/siamese/mnist_siamese_solver.prototxt
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Shell
115
5
#!/bin/bash PREMAKE_EXE=./3rdParty/premake/premake5 $PREMAKE_EXE --verbose --file=./premake/workspace.lua gmake2
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115
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#!/bin/bash isort --sl gradient_accumulator black --line-length 80 gradient_accumulator flake8 gradient_accumulator
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Shell
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python validate.py \ --model simple_pose_resnet18_v1b --num-joints 17 \ --batch-size 128 --num-gpus 8 -j 60
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Shell
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#!/bin/bash echo "[INFO]: Begin training of TDNODE\n" python src/train.py --config experiments/SLD/configs/train.yaml
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#!/usr/bin/env bash make html aws s3 sync _build/html/ s3://doc.bdd100k.com/ --exclude ".DS_Store" --acl public-read
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#!/usr/bin/bash python3 main.py train -m attnresunet -dr dataset_fake/ -w temp.h5 -c 3 -is 64 -b 2 -tl freeze_decoder
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Shell
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#!/bin/bash singularity run \ --writable-tmpfs \ --bind $PWD:/pnet_robustness \ r_pnet_robustness_1.0.0.sif $@
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#source env/bin/activate export ADAPET_ROOT=`pwd` export PYTHONPATH=$ADAPET_ROOT:$PYTHONPATH export PYTHON_EXEC=python
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Shell
119
4
set -ex conda install -c conda-forge visdom conda install -c conda-forge dominate conda install -c conda-forge moviepy
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Shell
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4
# package as source and binary python3 setup.py sdist bdist_wheel # load package to test pypi python3 -m twine upload dist/*
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Shell
127
4
#PBS -l walltime=7:59:00 #PBS -l select=1:ncpus=1:mem=16gb module load anaconda3/personal python bootstrap_rfmix_maxanc.py PUR
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#PBS -l walltime=7:59:00 #PBS -l select=1:ncpus=1:mem=16gb module load anaconda3/personal python bootstrap_rfmix_maxanc.py PEL
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127
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#!/usr/bin/env bash set -exu config_file=$1 echo "$config_file" CUDA_VISIBLE_DEVICES=0,3 python -m src.train -c $config_file
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7
#!/bin/bash if [ ! -d "env" ] ; then python -m venv env source env/bin/activate pip install -r requirements.txt fi
90408b0ee3d1923baa6c1aeed1d416c8948859c0ad085fe03ab108469a17045c
Shell
127
4
#PBS -l walltime=7:59:00 #PBS -l select=1:ncpus=1:mem=16gb module load anaconda3/personal python bootstrap_rfmix_maxanc.py MXL