sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
79b55ac576f475ad98225ced7b9328df080dbe1da4d70091b253532896ca00f2 | Text | 13,745 | 273 | [](https://github.com/psf/black)
[](https://github.com/torchmd/torchmd-net/actions/workflows/workflow.yml)
[ dataset.
## Data Download and Extraction in one of the three ways
## Optio... |
7ac5c52d49bac978ae6b5837b18c800cde5fb4ef8675302e7f022addd5cd5422 | Text | 14,846 | 188 | New Version:
-----------
Note: A new version of this software, implemented in C and with a different algorithm is now available at [https://github.com/chaoszhang/ASTER](https://github.com/chaoszhang/ASTER). This updated version has:
* weightedASTRAL (wASTRAL) which is more accurate than ASTRAL in our tests
* ASTRAL-P... |
3f6aa7a8d44c927d9aee9df1b05834eeaf6d946a9e2a52f89bbd68c3ce3e8175 | Text | 15,250 | 300 | # Deep Fast Vision: Accelerated Deep Transfer Learning Vision Prototyping and Beyond
<img src="https://user-images.githubusercontent.com/87379098/234222583-5f1fcbf6-368d-471d-8f64-fa25b6ccf925.png" alt="logo" width="60%">
Deep Fast Vision is a versatile Python library for rapid prototyping of deep transfer learning vi... |
8053eb389a915e55b71d152570336e9b9330c2a88f2f539e4d3ba4ea0f09d08b | Text | 15,315 | 300 | # Deep Fast Vision: Accelerated Deep Transfer Learning Vision Prototyping and Beyond
<img src="https://user-images.githubusercontent.com/87379098/234222583-5f1fcbf6-368d-471d-8f64-fa25b6ccf925.png" alt="logo" width="60%">
Deep Fast Vision is a versatile Python library for rapid prototyping of deep transfer learning vi... |
9ff1c51e4ff4c9b200bd25f2f81ad28a26fb949e2da7124fa7b23e0b54e10f09 | Text | 16,297 | 312 | # Orthology inference with *Possvm* <!-- omit from toc -->
***Possvm*** (_**P**hylogenetic **O**rtholog **S**orting with **S**pecies o**V**erlap and **M**CL_) is a python tool to analyse pre-computed gene trees and identify pairs and clusters of orthologous genes. It takes advantage of the **[species overlap algorithm... |
a031a694fd00751b3462fdea2b5e03a8daceb2ce4c6cc76c26acc79872231ead | Text | 17,282 | 483 | ## IAP [](https://zenodo.org/badge/latestdoi/19342535)
Illumina analysis pipeline.
## Download
Seperate releases can be downloaded here: https://github.com/CuppenResearch/IAP/releases or use git clone:
```bash
git clone git@github.com:CuppenResearch/IAP.git
```
## Usage
IA... |
fe96a7ca9807dcebf24bdc2c341e1e16aefdb78624efecd65a715eee57c58abf | Text | 17,506 | 388 | <img src="Logo.png" width="400">
# FVSdecoder: A new approach to identify a important group of brain region from fMRI databases
## Publication
Dang, T., Fermin, A. S., & Machizawa, M. G. (2022). oFVSD: a Python package of optimized forward variable selection decoder for high-dimensional neuroimaging data. Front. Neu... |
d4e28f01353fc534495f4f6822672b5674922a27eb740539af6cdd24b6f14c78 | Text | 18,768 | 420 |  
# JaBbA (Junction Balance Analysis)
```
_____ ___ _ _____
(___ ) ( _`\ ( ) ( _ )
| | _ _ | (_) )| |_ | (_) |
... |
180840c38e84ef2393a993c812e85845ca952e8f627f6b2242777a35572102c4 | Text | 18,880 | 430 | ---
title: pyment-public
model_file: artifacts/sfcn-multi.onnx
license: cc-by-nc-4.0
pipeline_tag: image-classification
tags:
- neuroimaging
- multi-task
- structural t1 mri
- brain age
---
This repository contains pretrained predictive models for structural Magnetic Resonance Images from multiple publications.... |
376ab854bc14b1aa88072d775f61ab0deef15d2e613958ed55259657b24bf127 | Text | 19,695 | 549 | <div align="center">
<p align="center">
<!-- prettier-ignore -->
<img src="https://user-images.githubusercontent.com/25985824/106288517-2422e000-6216-11eb-871d-26ad2e7b1e59.png" height="55px">
<img src="https://user-images.githubusercontent.com/25985824/106288518-24bb7680-6216-11eb-8f10-60052c519586.png" height... |
8f4c89c636606543b6396cbca436a7586bd662ef52eb365a00bc8b2f88ad5e97 | Text | 21,423 | 447 | <a href="https://imhex.werwolv.net">
<h1 align="center">
<picture>
<img height="300px" style="margin: 0; padding: 0" src="./resources/dist/common/logo/ImHexLogoSVGBG.svg">
</picture>
</h1>
</a>
<p align="center">
A Hex Editor for Reverse Engineers, Programmers and people who value their retinas w... |
0d7ab49689a8b402b2e081cecf38e6fe2fb44bccbbd2b8bd61bb08aaa53720af | Text | 22,010 | 227 | # geNomad
geNomad: Identification of mobile genetic elements
## Features
geNomad's primary goal is to identify viruses and plasmids in sequencing data (isolates, metagenomes, and metatranscriptomes). It also provides a couple of additional features that can help you in your analysis:
- Taxonomic assignment of viral... |
a096315874cbe8e2528df765697091f7a1fb37ffa394f498a8508afb554c2bbd | Text | 23,173 | 344 | # Bathymetry Estimator
This software is designed to train, evaluate and run bathymetry estimation model which uses earth observation data from Sentinel-2 satellites as input.
It consists of 3 main scripts:
* `train.py` - which is used to train model using Sentinel-2 images and reference data acquired by in-situ measu... |
0c977912bc76230db7f1bb891f882b4b3f6720651efb45260fb82968588707a7 | Text | 23,280 | 345 | # Bathymetry Estimator
[](https://doi.org/10.5281/zenodo.6779671)
This software is designed to train, evaluate and run bathymetry estimation model which uses earth observation data from Sentinel-2 satellites as input.
It consists of 3 main scripts:
* `tra... |
323b1791a55bbee8970b62c448d7c4f6cc43b7ec6a91494763be56502e0d62c5 | Text | 24,475 | 408 | Shield: [![CC BY-NC-SA 4.0][cc-by-nc-sa-shield]][cc-by-nc-sa]
This work is licensed under a
[Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License][cc-by-nc-sa].
[![CC BY-NC-SA 4.0][cc-by-nc-sa-image]][cc-by-nc-sa]
[cc-by-nc-sa]: http://creativecommons.org/licenses/by-nc-sa/4.0/
[cc-by-nc-s... |
3396f22e0bb42a5329ae6abc69d4142c4e6b9244e8d7e6dab9ee8adb9ff22b58 | Text | 24,615 | 828 | [](https://github.com/Ensembl/WiggleTools/blob/master/LICENSE)
[](https://github.com/Ensembl/WiggleTools/stargazers)
[](https://travis-ci.com/mskilab/fragCounter) [](https://codecov.io/github/mskilab/fragCoun... |
bad04c156a260cfd30652bb4770f8dc98a23f1567dc4ada563dd2223ebb5b79f | Text | 36,929 | 490 | # Parallel WaveGAN implementation with Pytorch
 [](https://pypi.org/project/parallel-wavegan/)  ![](https://img.shields.io/pypi/l/para... |
fd4ed680995871edb8c8ab484c166c24ab34863c659cdd8c39e72e323bf9f2bc | Text | 57,749 | 879 | # SHiVAi: SHiVA preprocessing and deep learning segmentation workflow
<img src="src/shivai/postprocessing/logo_shiva.png" align="right" width="100px" alt="SHiVAi logo"/>
The shivai package includes a set of image analysis tools for the study of covert cerebral small vessel diseases (cCSVD) with structural Magnetic Re... |
d201715cfbeb39983b74709f82248849dc58ac7b2bf982936c89e5dec0f0422d | TypeScript | 23 | 1 | export * from "./pcd";
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05b3f7de21600c2ad12e5cd5689b4ba698a5687bcaa99ae5df0c36d4cb336556 | TypeScript | 25 | 1 | export * from "./cache";
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6adea32ae9cfa33f8c704ce5bfa7eeb61abdc8a0f3309abdef3c16686ec7c3b4 | TypeScript | 25 | 1 | export * from "./event";
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91723d1c74c872629761c313336712586c6bb178d89de0452ef4b1bde48fb895 | TypeScript | 27 | 1 | export * from "./command";
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1aebb9b9556d94773c24dceb80ff471148bdc8db69c1126c8fc17293c61018ce | TypeScript | 29 | 1 | export * from "./contracts";
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5da5e58ce6e8fd5bbf17036eeb4219ac56143db237f7b5b0a6eaaa0ed5ecdc51 | TypeScript | 30 | 1 | export * from "./useFeature";
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4ae1e4a7bc9a352211c56ed9e073cdd87709d1f7453affac027392cd5906cd36 | TypeScript | 34 | 1 | export { default } from "./Link";
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bc54aec8dc6b7feecc5ecdc1d8233b6bf3aa8aeca7f1e899ea6b92bf73a3b40b | TypeScript | 34 | 1 | export * from "./FeatureFlagged";
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f93b422b28fba382ccb67214634808c125ff7fd8f72a6d3fb089493210e8c42b | TypeScript | 34 | 1 | export { default } from "./Edit";
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348547265501abb902cee695352c0e5921ab31ffd350ad03ea0e8b58af7a9d94 | TypeScript | 35 | 1 | export * from "./CommandRegistry";
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a9d995da6710d186602ce099ec2ba671fc42c929db7aa0c7e0f7289a46f258cd | TypeScript | 35 | 1 | export { default } from "./Modal";
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e837d6dbb966af5df273bfeec9957d3b8a155f989d4797593a7e130057f9650c | TypeScript | 35 | 1 | export { default } from "./Toast";
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5eb6a7b1416f1ec191d24fc297b212296b91ea2275fd184bd4c95c56f4ec66e7 | TypeScript | 36 | 1 | export { default } from "./Header";
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6d72372374dc952cd8374ebf7235e21330ebea1d9ad0dc49d98ca515776ad063 | TypeScript | 36 | 1 | export * from "./useConfirmDelete";
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e594085ed58b5075c5da0f1c0dabf6d1c49a00624ea7552e058e9813a8ab8ea8 | TypeScript | 36 | 1 | export { default } from "./Button";
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2fda73a7969d5d28f5b7e0e00ed9217b8d533355d1f97f6c13bddfb5b3394e18 | TypeScript | 37 | 1 | export { default } from "./Results";
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e9391b93b19785ace62dd2a8a072b8db8d508d68697cd3f0f73872f30fe85e7c | TypeScript | 37 | 1 | export { default } from "./Tooltip";
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16ff0abb0722108f463d2e8c3edf7ced308d90d4b4a4b85c2c4c160caf81783a | TypeScript | 39 | 1 | export { default } from "./MainSpace";
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3bf692d1b123002b859658ff8855a1a6ff9fc9168294ae122d9c624dcb9c70fa | TypeScript | 39 | 1 | export { default } from "./TabOption";
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43d53b23fbae9a94a834df79ec74a15d671629d77fd04e88dbe7f1c7cecdd4cd | TypeScript | 39 | 1 | export { default } from "./HelpPanel";
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fe0f3cb9e629ee5247e345f1ce9b98b65a257347d8557bbaaebca18c9d16662a | TypeScript | 39 | 1 | export { default } from "./JSONPanel";
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1052a7e15da3c09480de04f8121c89863dacc8cfd26ec8c11efaee79f1cfa8b6 | TypeScript | 42 | 1 | export class LookerError extends Error {}
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3855f14725c208a893fa1557429756cfe4f3e63716b021574e2ca7503d6dd274 | TypeScript | 42 | 1 | export { default } from "./FilterOption";
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85c0fb2623e082a6d153ed86954760bad3f639debc4370e3121a935bbdfe9718 | TypeScript | 42 | 1 | export { default } from "./ExternalLink";
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e24d9b4b00d763004c447b77d635ebbb0fecc036997aa26d0ce3f27348f2a1f3 | TypeScript | 42 | 1 | export { default } from "./StatusButton";
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ed26c69d99fb2a4a748f4344cc83702bc760d635335d39c1863f51ee6e95719e | TypeScript | 42 | 1 | export { default } from "./StringFilter";
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e241cae10d703e1c150fe7a2723eab760b8429acd7558d1e6f429be6b4ab831c | TypeScript | 44 | 1 | export { default as Plot } from "./Plotly";
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6f5433bbb280a2c9e682f426010a3c72a9b919704b23fa255529c9f6675242b9 | TypeScript | 45 | 1 | export * from "./useFetchFrustumParameters";
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4ec29f835adc21f8782c57a25af998014913eb33e003545114a01b4d51eaf3db | TypeScript | 48 | 1 | export { default } from "./PopoutSectionTitle";
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d6c4a6cfc0b18592aee321ab85233cda1e54910cf2bf58aeb5b589a931b505c3 | TypeScript | 48 | 1 | export const SELECTION_SCOPE = "@fiftyone/map";
|
f9b7badb5d8d02b89100ad67e008e01b776d0d325b871ab2b8a9cd599af2fd0e | TypeScript | 48 | 1 | export { default } from "./NumericFieldFilter";
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3ccdebee5bb157753a18306e9ed489727d11a03bae22e821890c9a70efedc6c5 | TypeScript | 49 | 1 | export { default } from "./FilterablePathEntry";
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6b5a1f1660827ca6cbae93cfa395228a7c35d2a8c2526310596d80bada44f574 | TypeScript | 50 | 1 | export { default } from "./EditFieldLabelSchema";
|
5545f957830df8f50fbe8c7f2ecdc39f554500027366311427e7f3b9db791696 | TypeScript | 52 | 1 | export { default as PillBadge } from "./PillBadge";
|
778063ce084e500f11b29d603f7bf5ebae36b50c27048f7e5d1a7828b88fd92c | TypeScript | 52 | 1 | export { default as ModalBase } from "./ModalBase";
|
e524a6b4874aec56b309cab6847472a9e349cdcf4020a9e51d20611899a64cfd | TypeScript | 53 | 2 | export * from "./useKey";
export * from "./context";
|
c1fca768a22c56aefebc3a03b3d2d680350a6e0987d76c0b8e664138c3bf66a1 | TypeScript | 55 | 2 | export * from "./accessors";
export * from "./recoil";
|
7489e419024d3059df6f462ed03499279cc6f7686d5b71e3c9bec4d8f3f44a6e | TypeScript | 58 | 2 | export * from "./featureClient";
export * from "./flags";
|
211d7eaa1ae696269a342ebead736f13f6ee9bd678aad83f143f5ae26293b690 | TypeScript | 59 | 2 | export * from "./KeyManager";
export * from "./KeyParser";
|
bcf2c4bba4009fcf4922523967d1f482b5a46162b74f4eac6c0b94f814648d1a | TypeScript | 63 | 1 | export { default, ErrorDisplayMarkup } from "./ErrorBoundary";
|
7b095f807816f796b9d03c0a863c7ddfb58beacef728746feb5d881959039c86 | TypeScript | 65 | 1 | export const SELECTION_SCOPE = "embe@fiftyone/embeddingsddings";
|
f4a215aeece6063a6eaeb5214a410c2780a7e76974bae2845229795b3b42e77a | TypeScript | 65 | 2 | export * from "./Option";
export { default } from "./Selection";
|
7f8dc2fc1730721e841633781ae83dd64e473f3646de3a544b4723b26b98d26d | TypeScript | 67 | 2 | export * from "./metadata-thumbnail";
export * from "./grid-tags";
|
316adb30766ad1eae6c4bc8b0a2f9bb3f504276ca21515d0179abfafa8ca23bc | TypeScript | 68 | 2 | export * from "./useFrustumActions";
export * from "./useFrustums";
|
71bcefc76ca24189217d06ffba4e736f637b24f7d8cd7cf7dc548db6ba29a6fb | TypeScript | 69 | 2 | export * from "./scene-sources";
export * from "./stream-selection";
|
fec18862ecae7a4c2396e73c228ccab31add57e328c4a0866a7f143ede25e152 | TypeScript | 72 | 2 | export * from "./useEventBus";
export * from "./createUseEventHandler";
|
c47f0f31ca93c0bf88a5e4069f0b890973020c295d686a24d1eed25fd4a3e826 | TypeScript | 74 | 5 | /**
* Copyright 2017-2026, Voxel51, Inc.
*/
export * from "./sidebar";
|
493fa2bb7a418eafe70b05561f1b1d56ff7d66d6302360528b9924af750014e5 | TypeScript | 75 | 4 | /**
* Enumeration of active feature flags.
*/
export enum FeatureFlag {}
|
a9a1e7c3aa081fefd18703f832e4a83d45a2cb474069f715d8adf221a6c45c08 | TypeScript | 75 | 2 | export * from "./CommandContext";
export * from "./CommandContextManager";
|
eea56371605459b10cd9dc174c559058b33eeb2ca60b1582cd3f680ad8a6db72 | TypeScript | 75 | 2 | /// <reference types="vite/client" />
/// <reference types="react/next" />
|
8f7b8b6d3d40bd33221e15f39dfdf26ed7fcc5299ef40c460f853f6db924f956 | TypeScript | 78 | 2 | export * from "./useCommandBus";
export * from "./useRegisterCommandHandler";
|
17a58cc3e44b76458d1f305e649dc2221d92d1701192912171c95bb465fe97bf | TypeScript | 81 | 3 | export * from "./client";
export * from "./components";
export * from "./hooks";
|
0d37ab5ab2dad26f77ddc142db6d6a7afeb11ee0cc778c0bafadbd1881268c68 | TypeScript | 82 | 2 | export * from "./AnnotationSaveIndicator";
export * from "./SaveStatusIndicator";
|
0910586154ce9b9d271e172b7e0d949d5648e5faa8e5f22c9332561f7ae024aa | TypeScript | 87 | 3 | export * from "./ActionManager";
export * from "./Action";
export * from "./Undoable";
|
8660d3513ea792c92da1a803056cd567fdb1eced8cab1f101c8c59ca8312d22b | TypeScript | 88 | 2 | /// <reference types="vite/client" />
/// <reference types="vite-plugin-svgr/client" />
|
c0e0163075f0fd2e757ff38f155f215367eb145b15004ab70ca1307078f193a5 | TypeScript | 97 | 4 | export {
SettingsNumberField,
type SettingsNumberFieldProps,
} from "./SettingsNumberField";
|
16b4a1302a18301d9cb5e04cee9bb3296f3bcc742f5d25f3ce8f90687d75d55b | TypeScript | 99 | 2 | export { default } from "./InteractiveSidebar";
export { createExploreIsDisabled } from "./utils";
|
9e270f8f4b3ce522381ba3ffe8e7fe09680d01d18f2bcf8e3c2afd507b21d397 | TypeScript | 99 | 3 | export * from "./annotationClient";
export * from "./framesClient";
export * from "./transformer";
|
8c5f86c57f1e0d1d80765d3ecc774edd4aab7ad611d75b3c14ef98a3688a4f60 | TypeScript | 103 | 4 | export * from "./dispatch";
export * from "./hooks";
export * from "./types";
export * from "./utils";
|
b949a8f1dc6b469628c56842cf5d69339fa1e041cfb2942f346ea9b097734bf9 | TypeScript | 103 | 2 | /** Format-neutral data facade for tile extension implementations. */
export * from "../host/runtime";
|
9ac68ce39cb1739d5c6f515ba2ebcc7aa41a66f1395da4849abb550ed7708c91 | TypeScript | 104 | 4 | export * from "./types";
export * from "./actions";
export * from "./hooks";
export * from "./context";
|
8b21b820da642705ad2263dace56320edc665b7909e800b6fcd4ec6cc9e4a913 | TypeScript | 105 | 5 | /**
* Copyright 2017-2026, Voxel51, Inc.
*/
export { default as SavedQueries } from "./SavedQueries";
|
cf952992a392f2638eec8c574e31da2ec5fbd61c0eaa4b6f8ba079223a88cd40 | TypeScript | 106 | 3 | export * from "./types";
export * from "./BrowserAnnotationProvider";
export * from "./videoPropagation";
|
e16d9dd53fa3a9fb5c2a05cb37b81965dea532fd05372baec714a7eb92b8a36b | TypeScript | 108 | 2 | export { EpisodeGridOverlay } from "./EpisodeGridOverlay";
export { TileLaneScope } from "./TileLaneScope";
|
67a44e1372cca885003a658131a13890f404942569c29c21e4b8ea664d5a7128 | TypeScript | 111 | 6 | /**
* Copyright 2017-2026, Voxel51, Inc.
*/
export const NUM_ROWS_PER_SECTION = 1;
export const MARGIN = 3;
|
16f054398ab9f5c35c513c029ad894e34c0bd1132a02bdffe484419e9b9c0f7f | TypeScript | 112 | 2 | /** Number of samples fetched per grid page, including range-selection lookups. */
export const PAGE_SIZE = 20;
|
231ff1c3ccd045863dda4ffe6e560df0aa51ed5c61ae8aa47b1ea4789f621aa3 | TypeScript | 112 | 5 | import "./OperatorIO";
import "./SchemaIO";
import "./histograms";
import "./modal-sample";
import "./samples";
|
3da0430d7e167e87f6b24e39aa0ccec6f5ac6a26da9e348d79385a85874c1e82 | TypeScript | 113 | 2 | export type { SceneSource } from "../ir";
export { streamSyncPoliciesForSceneSources } from "./stream-policies";
|
7ce04669165368fd035ca57b0867353c95f34b2fce017693af0a6810df960eb4 | TypeScript | 113 | 2 | export type { UseSearch } from "./SearchResults";
export { SelectorValidationError, default } from "./Selector";
|
7ee06762f20f9f1267cb1bca846459fc9a0d7f2143f13d7d7cd51c487456895f | TypeScript | 113 | 2 | /** Format-neutral data-plane facade for timeline extension implementations. */
export * from "../host/runtime";
|
9268cc05d5410e4f503e02ea6cf07abf013638f313c1b44342fd29192a4f9f7f | TypeScript | 118 | 3 | export { default } from "./Grid";
export { gridZoom } from "./recoil";
export { ZOOM_RANGE } from "./useZoomSetting";
|
37305f594534fcd2073ff37bc85b2e980c115f5dae02b35a8989f3b01238c141 | TypeScript | 119 | 2 | export type { CommandDispatcher } from "./dispatcher";
export { DEFAULT_CHANNEL_ID, getCommandBus } from "./registry";
|
2d4ac4b984c9b3891a9eabb63b9b5c9e6164b291453e8071055a56d68d67bfda | TypeScript | 121 | 7 | import { defineConfig } from "vitest/config";
export default defineConfig({
test: {
environment: "node",
},
});
|
0a14425b633036d289441bd102de98c5ad088c781f0110bb825594b1b5dcba87 | TypeScript | 122 | 7 | import { defineConfig } from "vitest/config";
export default defineConfig({
test: {
environment: "jsdom",
},
});
|
60102063b501f01aeff35e00c8c591a12c3ad4dae58a7998ec9ff66736d20d82 | TypeScript | 123 | 2 | export { type AdaptiveMenuItemComponentPropsType } from "./AdaptiveMenu";
export { type PanelCTAProps } from "./PanelCTA";
|
3607281b613451115dfde216d02e390d42477923a50d00aa73107d15f12f8b87 | TypeScript | 125 | 7 | /**
* Copyright 2017-2025, Voxel51, Inc.
*/
export * from "./dispatch";
export * from "./hooks";
export * from "./types";
|
4ac288b9f1d637f1d46e9cd8338dff806df87c2027d5e4b2bbc9880312839d80 | TypeScript | 128 | 5 | /**
* Re-export useFullSchemaEditor from hooks for backwards compatibility
*/
export { useFullSchemaEditor } from "./hooks";
|
bebdf25f4b0b2e45ab729813be37f27e7abf53f8b36eede49307fd6e830e9cc4 | TypeScript | 130 | 2 | export { default as useRefetchableSavedViews } from "./useRefetchableSavedViews";
export * from "./useSyncLabelsRenderingStatus";
|
c96685514b7b355bbc0fad12d9584f7af914230c7817427ab3a65388c7014bc2 | TypeScript | 134 | 3 | export * from "./__generated__/common_pb";
export * from "./__generated__/inventory_pb";
export * from "./__generated__/playback_pb";
|
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