sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
439ff6c784ed7ebfaddbc910503004fb51dd9489e2cfc1aae2691e0d1cbfd820 | MATLAB | 395 | 11 | % This script is to be run after processing a session with neural data
% The variable `expdata` is defined in `main.m`
% Step 1. Run the manual tagger to select noise clusters
tag_KS_clusters
%%
% Step 2. After tagging, you can create a "flat file" that contains all
% information from the experiment integrated into o... |
2d0cff5b423bef2efa24b1b128a241c7b6344345039cfb8d86e35dae15d65d8b | MATLAB | 396 | 12 | function out=init_data_struct(out)
out.collected_trial=0;
out.location_in_data=0;
s=size(out.sum_data{1});
for k=1:out.num_elec
out.data{k}=zeros(2,s(2));
out.sum_data{k}=zeros(1,s(2));
end
out.data{out.num_elec+1}=zeros(2,out.num_elec,s(2));
out.sum_data{out.num_elec+1}=zeros(out.num_elec,s(2));
out.trial_data=cell(ou... |
a802ecc6ca1df2d1b19273ea54dcc5e240f2fb435047ec2c0ee57ae417fd5770 | MATLAB | 396 | 16 | function val= get(pa5,prop)
% GET Get PA%X property from the specified object
% and return the value. Property names are:
if isa(prop,'char')
switch prop
case 'Device_num'
val=pa5.device_num;
case 'Controler'
val=pa5.controler;
case 'Atten'
val=pa5.atten;
otherwise... |
627c09b4cf8cc910d22500c4bc646effcd5357ac84c8452ea704ecc7be4ecb85 | MATLAB | 398 | 15 | HDSPInInd=6;
HDSPOutInd=6;
ftab=exp(linspace(log(1000),log(64000),51));
Hz=2*pi/192000;
for ii=1:length(ftab)
sig=sin(ftab(ii)*Hz*(1:192000));
win=[linspace(0,1,1920) ones(1,192000-1920*2) linspace(1,0,1920)];
sig=sig.*win/10;
y=audioplayer(sig,192000,24,HDSPOutInd);
samp=audiorecorder(192000,24,2,H... |
1fc9760f2a9e8379f0a807659cc55672706b6b0585c6373f15cdaa88903f3dce | MATLAB | 399 | 14 | function idxs = create_behav_clusters(speed, param)
% JN 2020-12-13, 2020-12-14
r_speed = speed(:, param.cluster_start_samp:param.cluster_stop_samp);
max_speed = max(abs(r_speed), [], 2);
idx_slow = max_speed < param.cluster_thr;
[ma, ~] = max(r_speed, [], 2);
[mi, ~] = max(-r_speed, [], 2);
idx_pos = (ma >= mi) & ~... |
15a51b6e4b610d979a60f4bdf27d77c01e520f22b4c454920b8a507d9b0ce3e4 | MATLAB | 404 | 17 | % cleanplot
% Mohammad Shams <m.shams.ahmar@gmail.com>
%
% For the current axis:
% - makes the tick lines of the plot outward
% - removes the white background
% - removes the border around the legend
% - converts all the text objects to Helvetica-8
function cleanplot
set(gca,'tickdir','out','color','none')
box... |
71b9660881d74f55d2884e898a51268a90e2898cbbedf9709154cac5131eea72 | MATLAB | 406 | 13 | function samp_points=synth(sig,samp_rate,trial_dur,varargin)
% SYNTH is BBN synth function.
% SAMP_POINTS=SYNTH(SIG,SAMP_RATE,TRIAL_DUR,VARARGIN) Samples the signal
% according to the givan SAMP_RATE and TRIAL_DUR. Returns the sampled
% points.
switch nargin
case 4
samp_points=randn(1,round(samp_rate*(trial_d... |
4e47cd2b36506520905bb954f3ddab9fce01272a1fdb65cdf03168a1739171ef | MATLAB | 407 | 15 | function valid_flag=is_legal_fname(comp,val)
% IS_LEGAL_FNAME checks the legacy of the given value as a signal Start-time value.
% VALID_FLAG=IS_LEGAL_FNAME(COMP,VAL) checks that VAL is a legal value as a
% filename. If legal returns 1, otherwise returns 0.
valid_flag=1;
if (~isa(val,'char'))
valid_flag=0;... |
6c8cdd2a351e76b19f3c456a5944da0bd32f6f6efc00c8e609c6bba4d4762c00 | MATLAB | 408 | 15 | function valid_flag=is_legal_freq(comp,val)
% IS_LEGAL_FREQ checks the legacy of the given value as a signal frequency value.
% VALID_FLAG=IS_LEGAL_FREQ(COMP,VAL) checks that VAL is a legal value as a
% signal Freq_comp value. If legal returns 1, otherwise returns 0.
valid_flag=1;
if (~(isa(val,'double')) || ... |
9d243516f8e09ced97f7beaaf79c336e6a36984af258314d9786a7914561acbf | MATLAB | 408 | 15 | function valid_flag=is_legal_ramp(comp,val)
% IS_LEGAL_RAMP checks the legacy of the given value as a signal Ramp-length value.
% VALID_FLAG=IS_LEGAL_RAMP(COMP,VAL) checks that VAL is a legal value as a
% signal Ramp_comp value. If legal returns 1, otherwise returns 0.
valid_flag=1;
if (~(isa(val,'double')) ||... |
97bf6953b9394da8b45f5fd21b3a0ff3355b6cc7ed9079dfe7e1485a33f7a457 | MATLAB | 409 | 15 | function valid_flag=is_legal_stime(comp,val)
% IS_LEGAL_STIME checks the legacy of the given value as a signal Start-time value.
% VALID_FLAG=IS_LEGAL_STIME(COMP,VAL) checks that VAL is a legal value as a
% signal STime_comp value. If legal returns 1, otherwise returns 0.
valid_flag=1;
if (~isa(val,'double') |... |
a328bd6699eee7fddaa36ef67fcc4bc4a9c46f850cfa9a87e348da0893cb7d30 | MATLAB | 409 | 10 | function [trimGammaBand,trimSdftm] = trimGammaBand(GammaBand,croppedSdftm)
% Trim to only see the transient window [50 to 150 ms based on croppedSdftm]
startTm = find(croppedSdftm == .050);
stopTm = find(croppedSdftm == .150);
trimSdftm = croppedSdftm(1,startTm:stopTm);
trimGammaBand.data = GammaBand.data(:,startTm:st... |
dc962c85533127a12bed13f60ee09c8ac7445f5985cd99a4bc9d7ac594190b43 | MATLAB | 409 | 21 | function [xx,rr] = myqr(kk)
% myqr orthogonalizes sets of vectors with qr decomposition
%
% Inputs:
% kk: raw vectors [ndim nvec]
%
% Output:
% xx: orthogonalized vectors [ndim nvec]
%
% xx = myqr(kk)
% Number of regressors
[ndim,nvec] = size(kk);
% Orthogonalize
[qq,rr] = qr(kk);
% Keep signs ... |
2903d27dcbf1772bca69506e3ad9623e78ae6ab58d2e60ee2c34fa21193042e5 | MATLAB | 410 | 15 | function valid_flag=is_legal_etime(comp,val)
% IS_LEGAL_ETIME checks the legacy of the given value as a signal End-time value.
% VALID_FLAG=IS_LEGAL_ETIME(COMP,VAL) checks that VAL is a legal value as a
% signal ETime_comp value. If legal returns 1, otherwise returns 0.
valid_flag=1;
if (~(isa(val,'double')) |... |
b12cae544941f6fdace9a5cf1f192b3cb311d409797005f773960fd3620095f2 | MATLAB | 411 | 8 | function out_manager = update_plot_flag(out_manager,index,status)
% function out_manager = update_plot_flag(out_manager,index,status,h)
flag_list=get(out_manager,'Plot_flags');
flag_list(index)=status;
% handles_list=get(out_manager,'Plot_handles');
% handles_list(index)=h;
% out_manager=set(out_manager,'Plot_flags',fl... |
36dcc678379260ea970c957b246a6183b1a00dfe48651fb9f05665b30f8fb7c5 | MATLAB | 414 | 17 | % Manually test ExperimentController
% Requires an Arduino to be connected to the computer.
% Author: Lasse Osterhagen
load('ecGapTrainingConfig.mat')
e = depInj.createObjFromTree(ecConfig);
lb = LogBook();
lb.addObservable(e, 'Running');
lb.addObservable(e, 'Stopped');
lb.addObservable(e, 'Ascend');
lb.addObservable... |
1efc4e5b58e2083bfa325839a3c4f7677884db8e8b1616acc99d74cd25b27847 | MATLAB | 417 | 15 | function valid_flag=is_legal_phase(comp,val)
% IS_LEGAL_PHASE checks the legacy of the given value as a signal phase value.
% VALID_FLAG=IS_LEGAL_PHASE(COMP,VAL) checks that VAL is a legal value as a
% signal Phase_comp value. If legal returns 1, otherwise returns 0.
valid_flag=1;
if (~(isa(val,'double')) || ~... |
d33fdf8fc02f525e9505cf667dbde7a8a797fdca594164daf4beae752fc649fa | MATLAB | 420 | 19 | % This function generates the coordinates of the blocks
%%
function m_blockPoint = Locate_blk(i, j, blk_step, block_Size, width, height)
if (i-1)*blk_step + block_Size < width
point_x = 1+(i-1)*blk_step;
else
point_x = width - block_Size + 1;
end
if (j-1)*blk_step + block_Size < height
point_y = 1 + (j-1)... |
b2cd7c197d23e4d1bce3a031009a7c33c323121015e1ecbd6a25829e8ea579d0 | MATLAB | 422 | 18 | function [NBLANKS FORMATSTRING]=progressbar(NITERATIONS)
%
%
%
% returns formatstring for a simple progressbar
% taken from http://blogs.mathworks.com/loren/2007/08/01/monitoring-progress-of-a-calculation/ Hnans Geerligs 8/2007
NBLANKS=ceil(log10(NITERATIONS)+1);
backspace_string='';
for i=1:NBLANKS
backspace_str... |
4b7805240228477e880fb2d0e489919cee1795fa2be7b6b13db905deab2219f2 | MATLAB | 426 | 16 | function valid_flag=is_legal_depth(comp,val)
% IS_LEGAL_DEPTH checks the legacy of the given value as a signal Depth value.
% VALID_FLAG=IS_LEGAL_DEPTH(COMP,VAL) checks that VAL is a legal value as a
% signal Depth_comp value. If legal returns 1, otherwise returns 0.
valid_flag=1;
if (~(isa(val,'double')) || ~... |
b8c23f841569169ba920e138e5c7372ca66107ed9b478f2c7dc81a60e001f2b9 | MATLAB | 426 | 18 | function [n_per_type,transitions_abs]=count_transitions(type_list)
n_per_type=zeros(1,max(type_list));
transitions_abs=zeros(max(type_list));
for i=1:length(type_list)-1
t1=type_list(i);
t2=type_list(i+1);
n_per_type(t1)=n_per_type(t1)+1;
transitions_abs(t1,t2)=transitions_abs... |
d1b26f3537fd292ac3e16619100baab09cfd893cefc66d097ca1af0c1c65fd07 | MATLAB | 427 | 16 | function new_sig=PULSE(varargin)
% NEW_SIGNAL class constructor.
switch nargin
case 0
% if no input arguments, create a default object
m_sig=Main_signal('PULSE');
new_sig.num_of_comps=4;%PULSE has the basic 4 components.
new_sig=class(new_sig,'PULSE',m_sig);
case 1
if (isa(varargin{1},'PULSE'))
n... |
06ee41764aed2a39b7944819d8e5b7580bacd7ac91931ff147b1a5338a9e2b51 | MATLAB | 428 | 12 | function epi_split(subjectdir, filename, scans_subj, prefix, fsldir, Ntime)
%filename includes the extension e.g. .nii.gz or .nii
%prefix: e.g., '_reg_sm_fil', '_reg'
cd(subjectdir);
system('pwd');
parfor scan_num=1:length(scans_subj)
cmd = [fsldir 'fslroi ' filename ' ' char(scans_subj(scan_num)) ...
... |
8d2edb891607bb1a26f79c4f903e7cf6d15bb32d6204efbcb066993a621f1dac | MATLAB | 434 | 20 | function stimDir = createStimulusDir(handles)
type = [];
area = [];
stimlistLine = [];
names = categorical({'reward';'punish';'timeout';'punishTO'});
T = handles.stimlist.T;
for jj = 1:length(names)
idx = find(T.soundtype == names(jj));
for kk = 1:length(idx)
type = [type; names(jj)];
end
a... |
0ce5ff45157db5b4bdc20f3c6741d348b6f49365844c284b31536d1594df9c9d | MATLAB | 435 | 21 | classdef (Abstract) AudioPlayer < handle
%AUDIOPLAYER is an abstract base class for audio players.
% Implement this interface to create audio players that can be used by
% ExperimentController.
% Author: Lasse Osterhagen
properties (SetAccess = protected)
% Time when last AudioObject was played
lastAOTime... |
aa2ef4d6deb5c6ff428cb368df2f6abb7b5e1f6822845abd5bc2d010417d3669 | MATLAB | 436 | 16 | function env=get_envelope(m_sig,index)
% GET_ENVELOPE returns the envelope in the specified index.
% M_SIG=GET_ENVELOPE(M_SIG,INDEX) returns the envelop in the
% specified index of the given main_signal's envelope list.
if (~(isint(index)) || index<1)
treat_error('Illegal INDEX input to Main_signal/get_envelope')... |
619f6d320487d20bd69e98e9fee2c4c059f6c73c8daa08898c39119e58c62d22 | MATLAB | 439 | 13 | function [croppedSDFforInteroc,croppedSdftmforInteroc] = cropSDF_getInteroc(SDF,STIM,sdftm)
% Find trials associated with non-brfs paradigms
interocTrials = contains(STIM.task,'interoc');
taskSDF = SDF(:,:,interocTrials);
% Crop dow to [-150 to 200 ms based on sdftm]
startTm = find(sdftm == -.150);
stopTm = find(sdft... |
871eecdf24ac00055da83068acd1e85679cf5515fe7d462fd60125499bf148cc | MATLAB | 439 | 13 | a = ['C:\logging_data\14-06-2017Test\bg_s1.tif'];
frame = imread(a);
imshow(a, 'Border', 'tight');
[x, y] = getpts;
x = round(x);
y = round(y);
size = 10;
rect = frame(y-size:y+size, x-size:x+size);
D = regionprops(rect == max(max(rect)), 'Centroid');
p = round(D.Centroid);
hold on;
h1 = plot(x+p(1)-11, y+p(2)-11, 'r*... |
6afb490c20ada2db7ecc5bfe1d235fb0567b6a47be1f813fa6226a924e655418 | MATLAB | 440 | 17 | % Manually test a setup with GapStimuli and LaserBlockCtrl intermixed.
% Uses an Arduino to trigger AudioObjects
% Author: Lasse Osterhagen
load('ecAOArrayGapLaserConfig.mat');
e = depInj.createObjFromTree(ecConfig);
lb = LogBook();
lb.addObservable(e, 'Running');
lb.addObservable(e, 'Stopped');
lb.addObservable(e, '... |
8911a35e876adda92ee609e846c1a227817155bec234de9a54af2b3dbe419cb1 | MATLAB | 441 | 10 | function throwIncorrectEventError(callingFunction, event)
% THROWINCORRECTEVENTERROR throws an ExperimentState:IncorrectEvent exception.
% This function is used by all LogbookStates to throw an exception if the
% following event is not allowed given the current event.
% Author: Lasse Osterhagen
msgID = ['Experime... |
2fd59a55ce2080d30b14d0eba18ec3fe4d0b3a837eb766d6b41faf398f103508 | MATLAB | 443 | 26 | % Play tones for recording
% Author: Lasse Osterhagen
% Prepare gaps to play
levels = 0:5:80;
ta = arrayfun(@(x) ToneStimulus('level', x), levels, 'UniformOutput', false);
ta = [ta{:}];
% Create ContinuousBgndAudioPlayer
load('cBgnAPToneConfig.mat')
a = depInj.createObjFromTree(audioPlayerConfig);
pause(1);
a.start... |
3281d3b93460f3b8b287146616688d3d2d0995aa03f0c063a8fa3c3dcfb7fea9 | MATLAB | 443 | 27 | function C = micca_fastcorr(X,Y)
%
% C = micca_fastcorr(X,Y)
%
%
if(nargin<2)
[T N] = size(X);
for i = 1:N
X(:,i) = X(:,i) - mean(X(:,i));
end
C = (X'*X);
X = sqrt(sum(X.^2));
C = C./(X'*X);
else
[T N] = size(X);
for i = 1:N
X(:,i) = X(:,i) - mean(X(:,i));
end
[T N] = size(Y);
for i = 1:N
... |
cc6403fc3e2b1dab39f7341580c79a7540ede92dc07378585887d5eb108befc0 | MATLAB | 445 | 20 | function val = get(sig,prop_name)
% GET Get Signal property from the specified object
% and return the value. Property names are:
% Name, Num_of_comps.
if isa(prop_name,'char')
switch prop_name
case 'Name'
val = sig.name;
case 'Num_of_comps'
val=0;
otherwise
treat_error([p... |
1426b04902284abcbfe29c3680821813e9c51e1b12a78da6f84eff1150745729 | MATLAB | 448 | 14 | function [Distance] = Block_distance(im1, im2)
% Distance calculated using the Frobenius Norm
blk_size = size(im1,1);
Distance = (norm(im1-im2,'fro').^2)/(blk_size.^2);
% 'L'
% Distance = im1.*log(im1) + im2.*log(im2) - (im1 + im2).*log((im1 + im2)./2);
% Distance = mean2(abs(Distance));
% % 'KL' % K... |
34a7af52455608835e6edd460e2ecd207921a5bc266e10b7e79e76cdc633adbe | MATLAB | 452 | 14 | function valid_flag=is_legal_trial_dur(comp,val)
% IS_LEGAL_TRIAL_DUR checks the legacy of the given value as a signal Trial_duration value.
% VALID_FLAG=IS_LEGAL_TRIAL_DUR(COMP,VAL) checks that VAL is a legal value as a
% signal Trial_dur_comp value. If legal returns 1, otherwise returns 0.
valid_flag=1;
if (~... |
72d182d0b5441f38a8aa30915d24f11b129f69850f23eab69be1b8dc7f2d5644 | MATLAB | 452 | 23 | function lowpass=LOWPASS(varargin)
% lowpass class constructor.
switch nargin
case 0
% if no input arguments, create a default object
env=Envelope('LOWPASS');
lowpass.num_of_comps=2;
lowpass=class(lowpass,'LOWPASS',env);
lowpass=add_to_comp_list(lowpass,'Freq_comp',Freq_comp(50));
case 1
if (isa(varargin{1},'LOW... |
12edcf7e636b835c40b0282df7ba67a5d9c14105da070b2319ce945d742e3b4b | MATLAB | 453 | 16 | % ISINT checks if a given value is an Integer.
% RES = ISINT(VAL) checks if a VAL is an Integer. Returns 1 if VAL is an
% integer and 0 otherwise.
% An integer is a whole number (not a fractional
% number) that can be positive, negative, or zero.
function res=isint(val)
if ((~(length(val)==1)) || ~(isnumeric(val)))... |
29104bc6a763fdf4bb6b3ca3273dca42e1ec1972c4af021a98a3289a0d5d5a70 | MATLAB | 454 | 14 | function [croppedSDF,croppedSdftm] = cropNaNsFromSDF(SDF,STIM,sdftm)
% % % Find trials associated with non-brfs paradigms
% % nonBrfsTrials = ((~strcmp(STIM.task,'brfs')) & (~strcmp(STIM.task,'dbrfs')));
% % taskSDF = SDF(:,:,nonBrfsTrials);
taskSDF = SDF;
% Crop dow to [-150 to 200 ms based on sdftm]
startTm = find(s... |
bb10e696d939d048ca3ede88e7ba27c706d72d0d7359e9bf5325a9dabef95341 | MATLAB | 454 | 18 | global ASIODev
InitializePsychSound
dev=PsychPortAudio('GetDevices');
k=cellfun(@isempty,strfind({dev.HostAudioAPIName},'ASIO'));
ASIODev=dev(~k).DeviceIndex;
tmp_points=zeros(192000/3,6);
tmp_routing=1:6;
samp_rate=192000;
t=1:length(tmp_points);
t=t(:);
Hz=2*pi/samp_rate;
tmp_points(1:1920,1)=1;
tmp_points(1920+(1:19... |
0304a3ab9a74cc71c9fccf14664702a6fd725aeba6479903145e312f04f64036 | MATLAB | 455 | 12 | function writeByuWithScalarToVTK(in_byu,in_mat,out_vtk);
%data_dir='/home/ROBARTS/alik/EpilepsyDatabase/standard/projects/penny_striatum/with_dti'
%template_byu=sprintf('%s/surfdisp_data/surfdisp_singlestruct_striatum_unbiasedAvg_affine/template/dstriatum_nii.byu',data_dir);
tmpfile=sprintf('/tmp/tempsurf%d.txt',rand... |
44428d73f20f7ec95ab11a2144be40bbcebe614a11df659016301ffa9ce78000 | MATLAB | 455 | 13 | function [tabbed_string] = tabJoin(cell_of_strings, tab_length)
tabbed_string = '';
for i=1:(numel(cell_of_strings)-1)
if numel(tab_length)==1
tab = tab_length-length(cell_of_strings{i});
else
tab = tab_length(i)-length(cell_of_strings{i});
end
tabbed_stri... |
dd0df85df9cecf1aaf01dd86c7e8ae011c1b8e2e84d9fc21d38f1a5b32543899 | MATLAB | 455 | 14 | function hPLT = NS_MeanErrPlot(db1X, db1Y, db1Err, db1Color)
if iscolumn(db1X), db1X = db1X'; end
if iscolumn(db1Y), db1Y = db1Y'; end
if iscolumn(db1Err), db1Err = db1Err'; end
hold on
% Plots the error in shaded area
db1XFill = [db1X db1X(end:-1:1)];
db1YFill = [db1Y + db1Err db1Y(end:-1:1) - db1Err(end:-1:1)];
fil... |
5a4df1fc7cd5a2c610a1c1d877fb019c103d192c25187856b2e84d805008a786 | MATLAB | 456 | 15 | % It is a code to calculate the integral
% "var" is a variable which that be integrated
% "var" should be a vector
% "dt" is a time interval between each variable
% "dt" should be a constant
% "int_v" is an output vector which are integrated values of "var"
% Copyright (c) 2023 Hong Gi Yeom
function [int_v]=In... |
c3f0586aab636eb9169a1bab6bd41314e80bef1ec171d5633470e0b34ec05548 | MATLAB | 456 | 17 | function val = get(mtf,prop_name)
% GET Get MTF property from the specified object
% and return the value. Property names are:
% Name, Signal, Freq_comp, Phase_comp, Comp_list,
% Num_of_comps, Comp_list_str.
if isa(prop_name,'char')
switch prop_name
case 'Envelope'
val=mtf.Envelope;
otherw... |
f53c427e0579a2ac3ddf3599fcb4c151f622e5b1e9581e1d8ce285794c2f09a6 | MATLAB | 460 | 16 | function valid_flag=is_legal_level(comp,val)
% IS_LEGAL_LEVEL checks the legacy of the given value as a signal level value.
% VALID_FLAG=IS_LEGAL_LEVEL(COMP,VAL) checks that VAL is a legal value as a
% signal Level_comp value. If legal returns 1, otherwise returns 0.
MAX_LEVEL=get(comp,'MAX_LEVEL');
valid_flag=1... |
30489646ca2cd88db87c5100cef98ff626ac0a32de07d36fa79c61b329c29f68 | MATLAB | 461 | 26 | % Play gaps for recording
% Author: Lasse Osterhagen
% Prepare gaps to play
gaps = .00015*2.^(0:10);
ga = arrayfun(@(x) GapStimulus('duration', x), gaps, 'UniformOutput', false);
ga = repmat([ga{:}], 1, 2);
% Create ContinuousBgndAudioPlayer
load('cBgnAPGapConfig.mat')
a = depInj.createObjFromTree(audioPlayerConfig)... |
b0332a750cef10c6b812924b5c2ffca6755012219fa53a4644bb5a283fbf199d | MATLAB | 462 | 20 | function bbn=BBN(varargin)
% BBN class constructor.
switch nargin
case 0
% if no input arguments, create a default object
m_sig=Main_signal('BBN');
bbn.num_of_comps=length(get(m_sig,'Comp_list'));
bbn=class(bbn,'BBN',m_sig);
level=get(bbn,'Level_comp');
level=set(level,'Static_value',... |
ec4f86ee83693f423298ef8571135954d92f00b3aaa290c75e0d3ab11b8fea75 | MATLAB | 463 | 17 | function data=mAO_getSpikes
global mAO
difftime=mAO.mt-mAO.PrevTrig;
num_samples=ceil(difftime*mAO.RX8sfreq);
t=(1:num_samples)*difftime/num_samples+mAO.PrevTrig;
data=zeros(mAO.num_elec,length(t));
for ic=1:length(mAO.SEGChannels)
for is=1:mAO.SEGind(ic)
if mAO.SEGbuffers{ic}(is)<mAO.mt
tind=fi... |
081a0c053f7f924a502ecfec3d5bd1c75d89b9b2f68ba9b6928ed102400a3c56 | MATLAB | 464 | 21 | function nice_plot(var, t)
var=real(var);
n = inputname(1);
closes = count(n, "_");
if contains(n, '_')
n = [replace(n, "_", "_{"), repelem("}", closes)];
end
plot(t, var, "LineWidth", 2)
title(n)
xlabel('Time [sec]')
ylabel(n)
xlim([t(1), t(end)]);
ylim([1.5*min([0, min(var)]), 1.5*max([0, max(var)])]);
set(gca,'... |
1dbc527e348d761b0449599ae92e8f4ee8cf683c9ba8e6c62a6c6de3be707546 | MATLAB | 464 | 16 | function val = get(gap,prop_name)
% GET Get GAP property from the specified object
% and return the value. Property names are:
% Name, Signal, ETime_comp, STime_comp, Ramp_comp, Comp_list,
% Num_of_comps, Comp_list_str.
if isa(prop_name,'char')
switch prop_name
case 'Envelope'
val=gap.Envelo... |
745ef978f4dc6eb588ca337cba505e0c7503358e739b25ea9ee0de90a8b3f519 | MATLAB | 466 | 15 | % used in SampleNplot.m
% This code was obtained from the following link
% https://www.mathworks.com/matlabcentral/answers/467330-how-to-plot-the-roc-curve-for-the-average-of-10-fold-cross-validation-using-matlab#answer_402596
function x= adjust_unique_points(Xroc)
x= zeros(1, length(Xroc));
aux= 0.0000... |
17a60456c7272e36cebbb0defd53b6912a5d4c89e2e9589d31f4a30c46205dee | MATLAB | 468 | 15 | function gap = set(gap,varargin)
% SET Set GAP properties and return the updated object
% Property names are:
% STime_comp, ETime_comp, Ramp_comp.
property_argin = varargin;
while length(property_argin) >= 2,
prop = property_argin{1};
if ~isa(prop,'char')
treat_error(['The property input is not a valid ... |
1fbb4259bfa5cc1d0917ee7affbf5f5efa32b07fe7e61b2533bb69eeaecbbb03 | MATLAB | 468 | 16 | function val = get(new_env,prop_name)
% GET Get NEW_ENV property from the specified object
% and return the value. Property names are:
% Name, Signal, Freq_comp, Phase_comp, Comp_list,
% Num_of_comps, Comp_list_str.
if isa(prop_name,'char')
switch prop_name
case 'Envelope'
val=new_env.Envelo... |
6e208588587a24c1884ef572e0ab6e1334f7ad380eeb587359160abb19a13837 | MATLAB | 468 | 15 | function mtf = set(mtf,varargin)
% SET Set MTF properties and return the updated object
% Property names are:
% Freq_comp, Phase_comp, Depth_comp.
property_argin = varargin;
while length(property_argin) >= 2,
prop = property_argin{1};
if ~isa(prop,'char')
treat_error(['The property input is not a valid ... |
8df66008f90feec6858fc800727959ff75b76bcdb3b3eff8d9aeda3c6f6bb72d | MATLAB | 468 | 16 | function val = get(trapeze,prop_name)
% GET Get TRAPEZE property from the specified object
% and return the value. Property names are:
% Name, Signal, Freq_comp, Phase_comp, Comp_list,
% Num_of_comps, Comp_list_str.
if isa(prop_name,'char')
switch prop_name
case 'Envelope'
val=trapeze.Envelo... |
bcb62f286aedbbfa9a0f84f610d987f1722d942ae624724606e01d03b58a7f95 | MATLAB | 469 | 17 | function val= get(bbn,prop)
% GET Get BBN signal property from the specified object
% and return the value. Property names are:
% Name, Signal, Level_comp, STime_comp, ETime_comp, Ramp_comp, Envelope_list,
% Num_of_env, Num_of_comps, Comp_list, Comp_list_str.
if isa(prop,'char')
switch prop
case 'Main_signal'
... |
39d519b3542a3ddf37496c1de1480a04e2ec8f41f5ccc89e1d8affc7ae72c4b8 | MATLAB | 472 | 21 | function fig_config(allsize)
if nargin < 1
allsize = 12;
end
xaxis_size = allsize * 1.2;
yaxis_size = allsize * 1.2;
legend_size = allsize;
ax = gca;
ax.LineWidth = 4;
ax.XAxis.FontSize = xaxis_size;
ax.YAxis.FontSize = yaxis_size;
if not(isempty(... |
7b79d28e302b4788116c40556569c4510b40713768de647f4e47d8a76d9ca919 | MATLAB | 473 | 27 | function FS_Sort(motif)
% Sort data by motif
%% Custom Paramaters
nparams=length(varargin);
if mod(nparams,2)>0
error('Parameters must be specified as parameter/value pairs');
end
for i=1:2:nparams
switch lower(varargin{i})
case 'filt_rad'
filt_rad=varargin{i+1};
case 'filt_alpha'
filt_alpha=varargin{... |
069ce8b2a77ba6103c44fda7b0818f67864a7156107da8ae523661399303f713 | MATLAB | 474 | 31 | function x_t = generate_Boltzmann(beta,W,N,T)
x_t = zeros(N,T);
for t=1: T
if t > 1
input = beta*W*x_t(:,t-1);
prob_vec = sigmoid(input);
else
prob_vec = rand(N,1);
end
logic_vec = rand(N,1) < prob_vec;
for i=1: N
if logic_vec(i)
x_t(i,t) = 1;
... |
2551bc383bca2556391771b76a8f6e996f25621fd10b0c5e51bd7dac38a7fc0a | MATLAB | 477 | 14 | function N = createOrnsteinGaussKern(n,p)
% calculation of Ornstein-Uhlenbeck process with Gaussian kernel
% calculation a priori for entire time
% Gaussian kernel (positive part) as low-pass filter
whiteNoise = p.varNoise .* randn(n,p.numSteps);
impResp = normpdf(0:p.dt:p.T,0,p.varImpResp);
impResp = impResp/norm(... |
a63ab54626540105f85ef62cdb24d6c2aca6400c37e6b7162003bac9ad0c6f3e | MATLAB | 477 | 15 | function durFreqSet = extractDurFreqSetFromExpAr(expAr)
%EXTRACTDURFREQSETFROMEXPAR extracts the duration/frequency set for
%ToneStimulus objects from an experimentArray
% Arguments:
% expAr - the experimentArray
% Author: Lasse Osterhagen
% Get all ToneStimulus objects
tar = expAr(arrayfun(@(x) isa(x, 'ToneStimu... |
c22a1c0f091db0eff2915f6668ca46dc682d23748ccc99d1a5ca3a5e373e1585 | MATLAB | 477 | 14 | function N = createOrnsteinExpKern(n,p)
% calculation of Ornstein-Uhlenbeck process with exponential kernel
% calculation a priori for entire time
% exponential kernel as low-pass filter
whiteNoise = p.varNoise .* randn(n,p.numSteps);
impResp = exp(-(0:p.dt:p.T)/p.varImpResp )/p.varImpResp;
impResp = impResp/norm(i... |
3d3b4d19b8d8b4e9a10ee60ec14255b59d7f34c90ef9b193c2740172a6f2559c | MATLAB | 478 | 17 | function freq=FREQ(varargin)
% FREQ class constructor.
switch nargin
case 0
% if no input arguments, create a default object
m_sig=Main_signal('FREQ');
freq.num_of_comps=5;
freq=class(freq,'FREQ',m_sig);
freq=add_to_comp_list(freq,'Freq_comp',Freq_comp);
case 1
... |
87096c40bfbb379b0181998fa6d3efd4866c09b25612c66789082733a528f780 | MATLAB | 478 | 34 | function b = removePad(a,pad)
y1 = pad(1);
y2 = y1 - 1;
if length(pad)==1
x1 = pad(1);
else
x1 = pad(2);
end
x2 = x1 - 1;
if length(pad) == 3
a(:,:,1:pad(3)) = [];
a(:,:,end-pad(3)+1:end) = [];
end
sz1 = size(a,1)-2*y1;
sz2 = size(a,2)-2*x1;
sz3 = size(a,3);
b = zeros(sz1,sz2,sz3);
for i = 1:size(... |
de723eae3c4c49974027dc3f7b7478b158af25e4f4cc124d29a87ea21247809b | MATLAB | 478 | 15 | function line=get_line(meta,index)
% GET_LINE returns a Basic-line from the list of lines of the MetaBlock.
% META=GET_LINE(META,INDEX) returns the line in the specified index
% in this metablock's line list.
if (~(isint(index)) || index<1)
treat_error('Illegal INDEX input to MetaBlock/get_line');
end
list=get(me... |
5fd5b66963e4c3a10ca4350e4e0eaa3c7f4e813fc77dcda42df5307f2ba25e7d | MATLAB | 479 | 16 | function [clustOut] = hierAgglomClust(emb,dim,thresh,nClust)
%hierAgglomClust Cluster using stated threshold or number of clusters
linkMeth = 'ward'; clustThresh = thresh;
X = emb(:,dim(1):dim(2));
Y = pdist(X);
Z = linkage(squareform(Y),linkMeth);
maxVal = max(Z(:,3));
if nargin>=4
... |
23de14679b5fa7d2d9bc3cf170bfdabed2bc0c36c4c4d69469b9d1c6db77bf16 | MATLAB | 480 | 15 | function trapeze = set(trapeze,varargin)
% SET Set NEW_ENV properties and return the updated object
% Property names are:
% Freq_comp, Phase_comp.
property_argin = varargin;
while length(property_argin) >= 2,
prop = property_argin{1};
if ~isa(prop,'char')
treat_error(['The property input is not a valid ... |
35a989435e1e6607f66d54b2e98cd95818a24bf703ff3a0a71c616f444b508c8 | MATLAB | 480 | 15 | function lowpass = set(lowpass,varargin)
% SET Set lowpass properties and return the updated object
% Property names are:
% Freq_comp, Phase_comp.
property_argin = varargin;
while length(property_argin) >= 2,
prop = property_argin{1};
if ~isa(prop,'char')
treat_error(['The property input is not a valid ... |
9b5061b6994a14d8e74d8b1df1d6f6691b3ed16f1008d6bdc648266d6cc3b7b7 | MATLAB | 480 | 15 | function new_env = set(new_env,varargin)
% SET Set NEW_ENV properties and return the updated object
% Property names are:
% Freq_comp, Phase_comp.
property_argin = varargin;
while length(property_argin) >= 2,
prop = property_argin{1};
if ~isa(prop,'char')
treat_error(['The property input is not a valid ... |
64869086994ede00a8ab2c485fca807a885c369876604f0df2d674cc7cfed6e6 | MATLAB | 483 | 19 | function img = gui_MibiPlotDataAndCap(data,cap,titlestr,figureTitle,varargin)
global pipeline_data
currdata = data;
currdata(currdata>cap) = cap;
disp('varargin >')
disp(varargin)
disp('<')
if any(strcmp('background', varargin))
if numel(varargin)==2
sfigure(varargin{1});
else
pipeline_data.back... |
0a4316c7f64347eec787926d6512a56cdabbcef9effba725d3f7f9f8f7a2fe5f | MATLAB | 484 | 19 | % Sript for manually testing ContinuousBgndAudioPlayer and
% GapStimulusSampleFactory
% Author: Lasse Osterhagen
load('cBgnAPGapConfig.mat')
audioPlayer = depInj.createObjFromTree(audioPlayerConfig);
audioPlayer.start();
pause(1);
audioPlayer.playAudioObject(GapStimulus('duration', .02));
pause(1);
audioPlayer.playA... |
134922aacd9e8941eee5379e013f39976cfcf9ef7821cff23c3569c38a221540 | MATLAB | 486 | 16 | function snr_times = AO_get_snr_times(folders)
% JN 2019-02-11
% JN 2020-05-07
fname = fullfile(folders.results, 'snr_times.mat');
if isfile(fname)
S = load(fname);
log_msg(folders.results, 'load-mat', fname);
snr_times = S.snr_times;
else
snr_times = AO_process_ttls(folders.logging, folders.results);... |
97a58d74b33967e5cad59c970a21cc45e490ab3fec9a777fa23af8deb7b19d9f | MATLAB | 486 | 17 | function [modelParams] = makeParamMat(Npd, numDuple, direction, decoderN)
if strcmp(decoderN,'pvd')
if direction==0
tmpVal = linspace(-180, 180, Npd+1);
modelParams.PD = tmpVal(2:end);
elseif direction==-15
modelParams.PD = linspace(-195, 165, Npd);
elseif direction==15
mode... |
c5dc1b86c75e80a1b0841764864898add5ac26aa6883e61d1a28668e3ea8e73a | MATLAB | 487 | 15 | function mdp_analysis(sounds_table, mdp_table, experimenter, outputdir)
% JN 2020-04-26 purpose of this function is simply to make everything
% maintanable by splitting code into different files, instead of one huge
% code file
switch experimenter
case "Maciej"
mdp_analysis_maciej(sounds_table, mdp_table,... |
c385717f7061940ab8bf4da1d7dae6f224ffe000a1ad4ac5a6fcf3508452dba6 | MATLAB | 490 | 16 | function [rates_ave] = spikeAnalysisFn(tinds,times,params)
tBurn = 1000;
rates_ave = zeros(params.Npop,1);
for jj = 1:params.Npop
% indicator for the current population
popData = ismember(tinds,params.pinds(jj):params.pinds(jj+1)-1);
% indicator for the right time window
timeData = times>=tBurn;
... |
de3d4db6c2e7ef360d208308f375acfacce3cee25d282eb1d9706c687347cf22 | MATLAB | 490 | 21 | classdef TestClassB < handle
%TESTCLASSB Class for testing createObjFromTree()
% This class is used on the second layer of a tree struct. It
% containts a two simple properties.
% Author: Lasse Osterhagen
properties
simpleProp1
simpleProp2
end
methods
... |
dcd50c9827fe67112645410a27db3de89e4d55312ba1f9c8c58ea11b5cb362ed | MATLAB | 496 | 24 | clear all
clc
A=load('6.25mM_AK_NAG_denoise.txt');
for n=1:1:60
for i=1:1:200
reform(200*(i-1)+1:200*i,n)=A(:,(n-1)*200+i);
end
end
%spect_mean=mean(reform);
%plot (spect_mean);
[Xc,Z]=airPLS(reform,10e7,6,0.1,0.5,20);
a=mean(Xc);
b=mean(Z);
figure
plot(a)
% title('order=3,lambda=e6');
... |
1d82c2986f8480a6fbb0ecce17752fd123932e9c0a9555c38b1b3fe8771a5d7e | MATLAB | 497 | 13 | function [auth_token] = getAuthToken(url, usr)
email = usr{1};
pswrd = usr{2};
uri = [url, '/api-token-auth/'];
header = matlab.net.http.HeaderField('Content-Type', 'application/json');
body_struct.email = email;
body_struct.password = pswrd;
body = matlab.net.http.MessageBody(body_struct);
... |
c870de4b86eb30c23aaede0d06d7394e9d0856f2233894da767752034b88a6cc | MATLAB | 498 | 25 | function gap=GAP(varargin)
% GAP class constructor.
switch nargin
case 0
% if no input arguments, create a default object
env=Envelope('GAP');
gap.num_of_comps=3;
gap=class(gap,'GAP',env);
gap=add_to_comp_list(gap,'STime_comp',STime_comp);
gap=add_to_comp_list(gap,'ETime_comp',ETime_comp);
gap=add_to_comp_list(gap,'... |
9982e99d9252075f2b07e695d0d58cf72c304872e2cb6a02664c8c2819f3bf14 | MATLAB | 499 | 14 | function trialsStr = extractStimuli(eventLog)
%EXTRACTSTIMULI extracts the stimuli from an eventLog cell array.
% eventLog is the raw output data of a PsychDetect experiment as it is
% saved to a .mat file.
% The output of the function will be an array of structs that contains
% all stimuli played.
% Author: ... |
b25a85995f598d43457ecd945fff7460be09ae61133eee0f82454882fc7dc894 | MATLAB | 499 | 17 | function synth=get_synth_chans(line,right_ear,left_ear)
synth_chans=zeros(1,4);
if (~isempty(findstr('1',right_ear)) || ~isempty(findstr('1',left_ear)))
synth_chans(1)=1;
end
if (~isempty(findstr('2',right_ear)) || ~isempty(findstr('2',left_ear)))
synth_chans(2)=1;
end
if (~isempty(findstr('3',right_ear)) || ... |
a6f42710dde67971239105ab2183bf98c6dd74678b4cff65d1f8f20a725d198b | MATLAB | 500 | 21 | function [sub, text] = sub_text(text,columns,breaks)
if numel(text)<=columns
sub = text;
else
found = false;
index = columns;
for i=columns:-1:1
if contains(breaks, text(i))
sub = text(1:i);
text = text((i+1):end);
found... |
632dd16feac9e6a80a346f5f8680edde2233561009e0ab41ef65d88a735b4794 | MATLAB | 502 | 15 | % Create a SOC Claustrum Network
gamma = 9;
rate = 10;
desired_SA = 0.3;
% Create claustrum network with connectivity from literature:
% E-E connectivity: 0.03 (Kim et al., JNeurosci 2014)
% E-I & I-E connectivity: 0.4 (Kim et al., JNeurosci 2014)
% I-I connectivity: 0.5 (Kim et al., JNeurosci 2014, Chia et ... |
a80ce9e2ec3503343e772b0ad014da2607e5f91ecba035cfdba483d7f2917608 | MATLAB | 504 | 25 | function mtf=MTF(varargin)
% MTF class constructor.
switch nargin
case 0
% if no input arguments, create a default object
env=Envelope('MTF');
mtf.num_of_comps=3;
mtf=class(mtf,'MTF',env);
mtf=add_to_comp_list(mtf,'Freq_comp',Freq_comp(20));
mtf=add_to_comp_list(mtf,'Phase_comp',Phase_comp);
mtf=add_to_comp_list(mt... |
5c6d83314e1c50f8f52ab4824fdc1d49c6e61e9308845cd37f4b73eea5e4715a | MATLAB | 505 | 16 | function val = get(freq,prop_name)
% GET Get FREQ property from the specified object
% and return the value. Property names are:
% Name, Signal, Level_comp, STime_comp, ETime_comp, Ramp_comp, Envelope_list,
% Num_of_env, Comp_list, Num_of_comps, Comp_list_str.
if isa(prop_name,'char')
switch prop_name
case... |
56515eb8f1b74c064add38aa0727b2018d1c9daab6550b39ce86b96f267e81be | MATLAB | 507 | 17 | function [outputArg1,outputArg2] = scatterText(x,y,z,useText,useColor,fontSize,fontWeight)
%UNTITLED4 Summary of this function goes here
% Detailed explanation goes here
if ~exist('fontSize','var')
fontSize = 6;
end
if ~exist('fontWeight','var')
fontWeight = 'normal';
end
hold on;
for iTxt = 1:lengt... |
7fbaf138ac7309132d023dc4005da349fe997f4852c5c10135e763e885d113c7 | MATLAB | 509 | 17 | function bbn= set(bbn,varargin)
% SET Set BBN properties and return the updated object
% Property names are:
% Level_comp, STime_comp, ETime_comp, Ramp_comp, Envelope_list.
property_argin = varargin;
while length(property_argin) >= 2,
prop = property_argin{1};
if ~isa(prop,'char')
treat_error(['The prop... |
8615ded4b7268367128dfcdee22f0432cb3fabd4ee4f98331b43c4f923edd640 | MATLAB | 509 | 16 | function val = get(nb,prop_name)
% GET Get NB property from the specified object
% and return the value. Property names are:
% Name, Signal, Level_comp, STime_comp, ETime_comp, Ramp_comp, Phase_comp, Envelope_list,
% Num_of_env, Comp_list, Num_of_comps, Comp_list_str.
if isa(prop_name,'char')
switch prop_name
... |
a10a6473128c0b9b60b4c1484242315ddfe1a67a50013384143275ee45b6e3db | MATLAB | 509 | 14 | function filteredData = gui_MibiFilterImageByNNThreshold(data,NNVec,nnValToRemov)
% function filteredData = MibiFilterImageByNNThreshold(data,NNVec,nnValToRemov)
% function receives an image and filters it according to the nearest
% neighbour results
filteredData = data;
posSignal=find(filteredData);
if ~isempty(posSi... |
f3931f02eccdfea7f558dee9b15bd4dc5b63e291fa3c85caa9b8cb5eb30bf4f8 | MATLAB | 509 | 27 | classdef (Abstract) LogbookState < handle
%LOGBOOKSTATE is the base class of all experimental states.
% An experiment traverses different states. Those states are reflected in
% the Logbook, which keeps track of them.
% Author: Lasse Osterhagen
properties (Access = protected)
% Reference to LogbookEvaluat... |
1d952e2d19d7a5457fa1d8d7daa535bde73e2cd0db85c034d92ecba1632687d7 | MATLAB | 510 | 20 | function [dd_T , df_T, I_CaT] = T_Type_calcium(V, d_T, f_T)
g_CaT = 6*10;
E_CaT = 38;
alpha_d_t = 674.173.*exp((V + 23.3)./30);
beta_d_t = 674.173.*exp(-(V + 23.3)./30);
tau_d_t = 1./(alpha_d_t + beta_d_t);
d_tm = 1./(1 + exp(-(V + 23)./6.1));
dd_T = (d_tm - d_T)./tau_d_t;
alpha_f_t = 9.637.*exp(-(V + 75)./83.3);
be... |
d8c050f2764740925bda59d7fe32c032236f703d1ff6bd7779b7d3efab92b157 | MATLAB | 511 | 24 | function new_env=NEW_ENV(varargin)
% NEW_ENV class constructor.
switch nargin
case 0
% if no input arguments, create a default object
env=Envelope('NEW_ENV');
new_env.num_of_comps=3;
new_env=class(new_env,'NEW_ENV',env);
new_env=add_to_comp_list(new_env,'Freq_comp',Freq_comp(20));
new_env=add_to_comp_list(new_env,'P... |
f09bf8aed8464628e5ed17905abc25a85249606b66e04aaeabb819bfc8046e70 | MATLAB | 513 | 17 | %% ________Merge functional scans from different sessions____________ %
function file_merge=epi_merge(fsldir, subjectdir, scans)
k = strfind(subjectdir,'subject');
sub = [subjectdir(k:end),' - '];
cd(subjectdir);
T = datetime('now'); time = whatsthetime(T);
fprintf([time, sub, ': ','Merge all nii files ... '])
cmd=... |
0b5034be2e6c107a48fc16bc2a569ff54845d1d224d896040bd405a40fa867af | MATLAB | 515 | 20 | function comp_val=get_comp_by_crid(signal,crid)
% GET_COMP_BY_CRID search for the first component in the signal with
% the given coordination-index(crid) and returns that component.
if (~isint(crid) || (crid<0))
treat_error('Illegal CRID input - must be a positive integer');
end
comp={};
comp_list=get_comp_list(... |
aaf73f1ca956138720501cc32aed7651c2d551f16361bde70d331c007302e404 | MATLAB | 515 | 18 | function succeeded=set_tag_val(rx8,tag_name,val)
succeeded=1;
actx_cntrl=get(rx8,'Controler');
check=invoke(actx_cntrl,'SetTagVal',tag_name,val);
if ~check
succeeded=0;
global Out_Manager;
if ~isempty(Out_Manager)
fid=get(Out_Manager,'Fid');
dev_num=get(rx8,'Device_num');
if ~(fid==-... |
0ddfe43ca80cf6559d0e0e2c07f1c264e501e86d363418c2d1d1171747039bfd | MATLAB | 516 | 21 | function val = get(comp,prop_name)
% GET get Freq_comp property from the specified object
% and return the value. Property names are:
% Sig_comp,Name,Swp_on,Seq_on,Static_value,Sweep,Seq_values.
global FREQ_COMP_DEFAULT;
if isa(prop_name,'char')
switch prop_name
case 'Sig_comp'
val = comp.Sig_comp;
case 'Name'
... |
5d5a755a9ee739ff1c3e6ff1a835b0b60d9e9206d895a63f436ef90a20a4b90a | MATLAB | 519 | 21 | function val = get(comp,prop_name)
% GET Get STIME_comp property from the specified object
% and return the value. Property names are:
% Name,Sig_comp,Swp_on,Seq_on,Static_value,Sweep,Seq_values.
global STIME_COMP_DEFAULT;
if isa(prop_name,'char')
switch prop_name
case 'Sig_comp'
val = comp.Sig_comp;
case 'Name'... |
c87ef67c43018a50da8562d38472c780291f4012cd4e6b9e483c29c04d359932 | MATLAB | 520 | 19 | function last_idx_before_skip = find_skipped_mpx_file(snr_table)
% JN 2019-06-10
% check if there is a "lost .mpx file" and return last "sane" index
if ismember('DatedFromFileNo', snr_table.Properties.VariableNames)
sort_column = snr_table.DatedFromFileNo;
else
sort_column = snr_table.FromFileNo;
end
fnum_d... |
8188e7131d6140331035422cc0b763a6bf2460fb769f53ceb4091a74d12747eb | MATLAB | 526 | 14 | function data = dt2_read_kilosort2(fname, n_channels)
% AK 07/02/2019
% Don't convert to double and don't convert to uV
fid = fopen(fname, 'r');
int_data = fread(fid, 'uint16=>uint16');
fclose(fid);
% Memory math: Typical 'NEUR0000.DT2' file from 31.01.19 is 16MB. Length of recording is 8.19 seconds
% When loaded as ... |
bce8dd46fe4c1094f9a7d472e5823f8aa5a243f2c1f59a88e98cf4b0c9c42eaa | MATLAB | 526 | 16 | function freq = set(freq,varargin)
% SET Set FREQ properties and return the updated object
% Property names are:
% Level_comp, STime_comp, ETime_comp, Ramp_comp, Freq_comp, Envelope_list.
property_argin = varargin;
while length(property_argin) >= 2,
prop = property_argin{1};
if ~isa(prop,'char')
treat_e... |
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