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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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MATLAB
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% redirect to mx.misc.ccc mx.misc.ccc
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MATLAB
50
6
function endFastrak(s) fclose(s); delete(s); end
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MATLAB
58
1
arrayfun(@(x) view([90,-90]),findobj(gcf,'Type','axes'))
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MATLAB
61
3
function nbFibersPerSqMm = explicit(nbFibersPerSqMm) end
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MATLAB
65
5
function c = Viemeister(depth) c = (1+(depth.^2./2)).^(-0.5);
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MATLAB
77
5
function LaunchAnnotator(self) self.BackupAnnotations() Annotator(self); end
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MATLAB
78
2
function tpfileparams=tpfnameparams(dirname,channel,params) tpfileparams= [];
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MATLAB
81
5
function clear_FEM() import com.comsol.model.util.* ModelUtil.clear(); end
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MATLAB
82
2
function tpfileparams=tpfnameparams(dirname,channel,params) tpfileparams= params;
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MATLAB
83
3
function ep = epsych_path % ep = epsych_path ep = fileparts(which('epsych_path'));
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MATLAB
88
4
function ASname = AS_name(AS) ASname = sprintf('AS%d.%d', AS.elecId, AS.asId); end
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MATLAB
88
4
Qemax=0.03; Thetae=-58.5; Sigmae=3; Qe=Qemax/(1+(exp(pi*(Thetae-Ve)/(sqrt(3)*Sigmae))));
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MATLAB
91
5
function x = boundedExp(x) MINEXP = -90; MAXEXP = 90; x = exp(max(MINEXP,min(MAXEXP,x)));
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MATLAB
91
5
function mkdir_CB(dirName) if ~exist(dirName,'dir') mkdir(dirName) end
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MATLAB
94
6
function save_FEM(model, FEM) mphsave(FEM, model.paths.FEM, 'optimize', 'size'); end
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MATLAB
95
5
function [] = box_ticks(ax) %BOX_TICKS ticks and set(ax,'Tickdir', 'out', 'Box', 'off'); end
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MATLAB
101
3
function fname=tpfilename(tpfileparams,cycle,channel,frame) fname=[tpfileparams.filenames(1).name];
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MATLAB
102
4
function xout = zeroPad(xin, zeroImage) xout = zeroImage; xout( 1:size(xin,1), 1:size(xin,2) ) = xin;
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MATLAB
102
4
function OverwriteAnnotation(self, replacementT) self.AnnotationTable = replacementT; self.Save(); end
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MATLAB
104
4
function f = data_path(name) f = fullfile(what('fiber_distribution/builtin/data').path, name); end
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MATLAB
105
3
function fname=tpfilename(tpfileparams,cycle,channel,frame) fname=[tpfileparams.filenames(frame).name];
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MATLAB
107
7
function close_FEM(FEM) import com.comsol.model.util.*; try ModelUtil.remove(FEM.tag); end end
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MATLAB
108
4
function paces = list_pace() paces = {'Slow pace (2 s)', 'Mid pace (1.6 s)', 'Fast pace (1.2 s)'}; end
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MATLAB
109
4
function myclose % myclose Disconnect from MySQL [mym utilities] % Example myclose mym('close')
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MATLAB
109
4
function cellArray = remove_empty(cellArray) cellArray = cellArray(~cellfun(@isempty, cellArray)); end
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MATLAB
110
6
function geomTag = geom_tag(FEM) t = FEM.geom().tags; assert(numel(t) == 1); geomTag = char(t(1)); end
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MATLAB
110
7
function x = Threshold(y,t) % Threshold -- Apply max(0,y-t) res = (y - t); x = (res + abs(res))/2;
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MATLAB
110
4
%%% format_fig set(gcf, 'Color', 'white') set(gca,'FontSize',18,'FontWeight','bold') set(gca,'LineWidth',1.5)
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MATLAB
111
5
function N = normalizeImage(I) minimum = min(I(:)); maximum = max(I(:)); N = (I-minimum)/(maximum-minimum); end
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MATLAB
112
7
function out = dround(in,prec) if( nargin < 2 ) prec = 100; end out = round( in * prec) / prec;
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MATLAB
112
5
function flags=marks_bound2flag(bounds,flags) for i=1:size(bounds,1); flags(bounds(i,1):bounds(i,2))=1; end
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MATLAB
115
8
s = serial('COM5'); set(s,'BaudRate',9600); fopen(s); fwrite(s,1); foodPot = fscanf(s); fclose(s) delete(s) clear s
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MATLAB
115
5
function [taste] = taste_strings() %TASTE_STRINGS Return the taste strings taste = {'sour', 'salt', 'sweet'}; end
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MATLAB
115
4
function behaviors = GetBehaviors(self) self = self.Load(); behaviors = categories(self.AnnotationTable.Label); end
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MATLAB
117
5
function [params] = getSpkHistVar(params) params.W(:) = inf; params.B(:) = DMC.utils.boundedExp(2*params.H(1)); end
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MATLAB
118
6
function fibersCompart = load_fibers_compart(modelPaths) load(modelPaths.fiberCompart, 'fibersCompart'); end
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MATLAB
120
4
% redirect to mx.three_dimensional.viewGii function viewgii(varargin) mx.three_dimensional.viewGii(varargin{:}); end
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MATLAB
120
8
function comb = f_NcombK(N,K,r) comb = zeros(r,K); for i=1:r rr = randperm(N); comb(i,:) = rr(1:K); end
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MATLAB
122
4
function [ angle ] = Angle( A, B ) %Angle - returns angle between two verticies angle = atan2(norm(cross(A,B)),dot(A,B));
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MATLAB
122
5
function filePath = mkdir_file(filePath) folder = fileparts(filePath); if ~isfolder(folder); mkdir(folder); end end
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MATLAB
122
4
function displayEndOfDemoMessage(filename) % Dummy function - do nothing. % Copyright 2009-2020 The MathWorks, Inc.
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MATLAB
124
3
function idx_trials=find_trials(myconditions,mystring) idx_trials=find(~(cellfun(@isempty,regexp(myconditions,mystring))));
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MATLAB
124
6
function fibersPerFascicle = load_fibers(modelPaths) load([modelPaths.pop 'fibers.mat'], 'fibersPerFascicle'); end
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MATLAB
126
4
function tic_handle = start_time() fprintf(['\t> Start time: ' datestr(now,'HH:MM:SS') '\n']) tic_handle = tic; end
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MATLAB
129
7
function labels = GetLabelsFromTable(t) labels = {}; for i=1:size(t, 1) labels = [labels; {t.Annotations{i}.Label}]; end end
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MATLAB
129
5
function sem = nansem(x) %%% Computes the standard error of the mean. x = x(~isnan(x)); sem = std(x)/sqrt(numel(x));
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MATLAB
130
6
function cellArray = TransposeCellArrayElements(cellArray) for i = 1:length(cellArray) cellArray{i} = cellArray{i}'; end end
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MATLAB
130
8
function cc = remove_lower_half(cc) for y=1:size(cc,1) for x=1:y cc(y,x) = 0; end end end