sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
25cc0097963769bf45862153f95fa2046cb7e85931db72eb4b5129fc29f78f79 | Text | 14,227 | 144 | # Quanty-cFOS.ijm: An ImageJ/Fiji tool to count Fos/*c-fos* Positive Neurons
<p align="center">
<img width="924" height="412" src="static/cover.jpg">
<img.resize {
max-width:auto;
max-height:100%;
}
</p
The *Quanty-cFOS.ijm* is an ImageJ/Fiji tool developed to count spec... |
4c02c8bf636055c1832a1e86c5582b77ad5045a2372569f1050ce10b011bf5d7 | Text | 14,501 | 234 | # RESILIENT
RulE baSed atrIaL fIber gENeraTor.
## Overview
RESILIENT is a rule-based atrial fiber generator for generating bi-atrial fibers and interatrial bridges. The algorithm was developed at IBT and published in Wachter et al. 2015 [[1](#1)]. The algorithm works with triangle, terahedron and voxel meshes. The fib... |
2c321fe793bfa9ca4a5a03e3a92dfee724378d35e7f838825376e8d08f2248c0 | Text | 14,505 | 234 | # RESILIENT
RulE baSed atrIaL fIber gENeraTor.
## Overview
RESILIENT is a rule-based artial fiber generator for generating bi-atrial fibers and interatrial bridges. The algortihm was developed at IBT and published in Wachter et al. 2015 [[1](#1)]. The algrothim works with triangle, terahedron and voxel meshes. The fib... |
85f55bcc632a155c71a66ef3a13296dd4027c2be8dcedede88ec9aa53f4a2e79 | Text | 14,526 | 170 | # GMLM_dmc
Generalized multilinear model for dimensionality reduction of neural population spike trains.
While this code is intended for modeling responses during decision-making tasks, it could be used more broadly for tensor regression.
Currently, the code primarily supports the Poisson likelihood to model spike coun... |
9c6cc2ceadb4120c23834306de649ea3c48947d6e128664cf3b8a8a9c58efad3 | Text | 14,951 | 270 | # A *Faster* Pytorch Implementation of Faster R-CNN
## Write at the beginning
[05/29/2020] This repo was initaited about two years ago, developed as the first open-sourced object detection code which supports multi-gpu training. It has been integrating tremendous efforts from many people. However, we have seen many h... |
d013af71bc5ecd21944390d0c938aaa4739e8c9830b9847f64cceb72d117087e | Text | 15,920 | 339 | # Assem-VC — Official PyTorch Implementation
#### **Assem-VC: Realistic Voice Conversion by Assembling Modern Speech Synthesis Techniques**
Kang-wook Kim, Seung-won Park, Junhyeok Lee, Myun-chul Joe @ [MINDsLab Inc.](https://maum.ai/), SNU
**Accepted to IEEE International Confer... |
32b765dba7ccf39d0995d55151a82f089af9450c33f036c6d1fa727659c033c5 | Text | 16,210 | 210 | ## Note: As of v13.10, ERPLAB has been updated to be compatible with MATLAB 2025a+. However, there may still be remaining bugs; please report them to us if you encounter issues!
ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with [EEGLAB Toolbox](http://sccn.uc... |
c1aca9039e600f010120854cbc485bbddd77558bd4e2a7bae058dc6d149249bf | Text | 16,212 | 370 |
## MaSIF- Molecular Surface Interaction Fingerprints: Geometric deep learning to decipher patterns in protein molecular surfaces.
[![bioRxiv shield](https://img.shields.io/badge/bioRxiv-1709.01233-green.svg?style... |
424636af8624b89c5151f2956d5e65c14b6579cacb775aaecf05fba16317649d | Text | 16,464 | 243 |
<p align="center">
<img src="docs/images/banner.jpg" width=1200>
</p>
[](https://doi.org/10.1093/bib/bbac491)
[](https://doi.org/10.5281/zenodo.7105941)
# Ultraliser
_Ultraliser_ is... |
c6c9d6514b5959c8839d994ad9338129497d1826c5838f866119767e5d8b2601 | Text | 16,774 | 633 | <div class="cell markdown">
# SMILES enumeration, vectorization and batch generation
[](https://www.cheminformania.com/useful-information/smiles-enumeration-as-data-augmentation-for-molecular-neural-networks/)
</div>
... |
8a5a205f48b139af04fb0b930f6926eb3f9d8c95c4a806d8015b74f15ed0350c | Text | 16,889 | 333 | # Poreplex
Signal-level preprocessor for Oxford Nanopore direct RNA sequencing (DRS) data.
Poreplex does many preprocessing steps required before the downstream analyses
for RNA Biology and yields the processed data in the ready-to-use forms.
[](https://pypi.p... |
3198f155f2a7b5df0a61c2fbd0f626b6113350ea8753c0442fdffaf31e88603f | Text | 16,893 | 469 | # Ascending neuron screen analysis pipeline
[](https://opensource.org/licenses/Apache-2.0)
[](https://badge.fury.io/gh/tterb%2FHyde)
This repository is used to generate the figures published in th... |
cdec6014cf8c44bbbb326ec08f31deb8529c374730541bad428f817ca5f87a6e | Text | 17,245 | 539 | # CROPro
CROPro prepares prostate MRI data for AI workflows.
It supports full-dataset download, resampling, normalization, and cropping for:
- T2W-only workflows
- bpMRI workflows (T2W + ADC + HBV)
- Negative, positive, and unknown patient groups
If you use CROPro, please cite the paper in the Citation section.
##... |
e780cc7b8c6066ed713490edf3f80c5bf2675d1a695716f42bfcfed3c3436875 | Text | 17,611 | 216 | <!-- [](https://travis-ci.org/johnbarton/ACE) -->
[](https://doi.org/10.1093/bioinformatics/btw328)
# ACE
# Table of contents
1. [Int... |
2dda6120b8fde9efc40f342db96087c1827b8657f98bb16b668ebe3c34f66c8f | Text | 17,846 | 218 | <p align="center">
<img width="320" height="320" src="figures/U2Net_Logo.png">
<h1 align="center">U<sup>2</sup>-Net: U Square Net</h1>
</p>
This is the official repo for our paper **U<sup>2</sup>-Net(U square net)** published in Pattern Recognition 2020:
## [U<sup>2</sup>-Net: Going Deeper with Nested U-S... |
384be8856a3d9e33a034cb8602e98b6d55aa1a588413f50c2301fa467f15b2ab | Text | 19,973 | 389 | # Inf-Net: Automatic COVID-19 Lung Infection Segmentation from CT Images
> **Authors:**
> [Deng-Ping Fan](https://dengpingfan.github.io/),
> [Tao Zhou](https://taozh2017.github.io/),
> [Ge-Peng Ji](https://scholar.google.com/citations?user=oaxKYKUAAAAJ&hl=en),
> [Yi Zhou](https://scholar.google.com/citations?hl=zh... |
bd11eb4fc3cfdaa0007749fd9110b7874c99c54559c6fc1647c7e844b1fcde83 | Text | 20,601 | 372 | # INFANT — AI Competition Platform
A **social network** and **machine-learning competition platform** for clinicians and
researchers in paediatrics and neonatology, built at the
[INFANT Research Centre](https://www.infantcentre.ie/), University College Cork, as part of
its Open Science work.
The platform was used to ... |
9276515fa3340655f5c637b670c2b5e426b8351cd8bf99f783ed3728ed8801d8 | Text | 20,783 | 436 | # crg2
Clinical research pipeline for exploring variants in whole genome (WGS) and exome (WES) sequencing data
<div align="center">
<img src="/crg2logolarge.png" width="800px"</img>
</div>
crg2 is a research pipeline aimed at discovering clinically relevant variants in whole genome and exome sequencing data.
It ... |
f28f665bc007b0618e5f7dd1c099500d78e9238550d55d7a7beba5d3b7bdf70f | Text | 20,914 | 371 | # U-Time & U-Sleep
Official implementation of
* The *U-Time* [[1]](#utime_ref) model for general-purpose time-series segmentation.
* The *U-Sleep* [[2]](#usleep_ref) model for resilient high-frequency sleep staging.
This repository may be used to train both the original U-Time and newer U-Sleep models.
However, the ... |
ebf418e3b91042d94f2978544505c049155622292c3aad0ece49c32fa7b6fbe8 | Text | 21,047 | 462 | # CMSeq #
CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus.
**Requires:**
* samtools (> 1.x)
* numpy
* pysam
* pandas
* Biopython with bcbio-gff module _(warning: Biopython <= 1.76 is required for `polymut.py`)_
## Installation
[, University College Cork, as part of
its Open Science work.
The platform was used to ... |
24f3d22901369ba92ee9e1eb9639d5fbe2417123fe40cf0a503b862e82b100df | Text | 21,870 | 337 | # DeepInsight3D
DeepInsight3D package to deal with multi-omics or multi-layered data
DeepInsight3D has 3 main components. 1) conversion of multi-layered non-image samples (such as multi-omics or similar tabular data) into colored image-forms (i.e. 3D image samples). 2) processing colored images to convolutional neural... |
451d9163fb363434ccb9dcf28f1d50aaa6ca0457dcf984387da563f1454bcad7 | Text | 22,618 | 527 |
# scHumanNet
**Construction and analysis of cell-type-specific functional gene network with SCINET and HumanNetv3**
[](LICENSE.txt)
[](https://python.org)
[-->
<a name="readme"></a>
<img alt="Phys2BIDS" src="https://github.com/physiopy/phys2bids/blob/master/docs/_static/phys2bids_logo1280×640.png" height="150">
phys2bids
=========
[ at the Bavarian State
Library open sources another BERT models 🎉
# Changelog
* 13.12.2021: Public release of Historic Language Model for Dutch.
* 06.12.2021: Public release of smaller multilingual Historic Language Models.
* 18.11.2... |
172b93be15c6828819b2c3c9b7107c6acb9abc9266650f317796d047eaaaaa16 | Text | 26,059 | 231 | # OWL 2 EL <-> Neo4J Mapping "Direct existentials"
This is a preliminary draft of our Neo4J to OWL 2 mapping. The goal is to be able to import a well defined subset of OWL 2 EL ontologies into and export them from Neo4J in such a way that entailments and annotations are preserved (not however the syntactic structure) ... |
48a5eafa15af0c2d9bcfc29086e93fc91043a956c87bc105427b6a4fb8b10ec3 | Text | 27,162 | 326 | 
# Table of Contents
* [Diversity Statement and Code Notebook](https://github.com/dalejn/cleanBib#diversity-statement-and-code-notebook)
- [Diversity statement template](https://github.com/dalejn/cleanBib#diversity-statement-template)
+ [Template](http... |
304956772dd16983bc9b25689f49e1076048e434370488502d9f776ba3d7253a | Text | 32,257 | 715 |
<div id="badges"><!-- pkgdown markup -->
<a href="https://CRAN.R-project.org/web/checks/check_results_future.html"><img border="0" src="https://www.r-pkg.org/badges/version/future" alt="CRAN check status"/></a> <a href="https://github.com/futureverse/future/actions?query=workflow%3AR-CMD-check"><img border="0" src="h... |
7c7f4cd76565d620f9337caa3a2ce054912cd860bcfde22c64bdbffe790c5a23 | Text | 38,858 | 788 | This pipeline has been deprecated as of June 2018. Please update your pipelines to the official WDL-based ENCODE DCC pipeline at [https://github.com/ENCODE-DCC/chip-seq-pipeline2](https://github.com/ENCODE-DCC/chip-seq-pipeline2) (June 2018)
===================================================
*June 2018:* Note that th... |
d57de6413a66a46015899fc22fd508ddb7275deb7bbf7f68881c50db51e8908f | Text | 50,381 | 1,515 | # Chick 10x Neural Development
<p align="center">
<img src="./suppl_files/TissueCollection.png" width="100%">
</p>
This repository provides the code to run the 10x single cell RNA-eq analysis in [Trevers et al. 2023](https://doi.org/10.7554/eLife.73189).
- [Data availability](#data-availability)
- [Reproducing ou... |
e99249fcbf15d879e1cefa012a14a39bb02e4cb46669fc31b7893d831ac3303a | TypeScript | 34 | 1 | declare module 'isomorphic-fetch'; |
8c16b5b40ed745fcede2542dd1da4bad4537abe9003f8c6ba9023a60386dad02 | TypeScript | 60 | 2 | export * from './types';
export * from './responseBuilder';
|
5d60a31d8fc4a84f90815a681ba9f081c889f8567c6cfd459fd4b2da4c22472f | TypeScript | 69 | 2 | export { Components } from './components';
import '@stencil/router';
|
abafc48a8fcfc0d5b2839832cb2280b4dc3871994e9886f8d8ca7c397ec874b7 | TypeScript | 91 | 6 | export default {
background: "#DADAD9",
primary: "#FFFFFF",
secondary: "#A9A9A9"
};
|
3667990426d8a3dc2a373515be2a890fbd319aed0bccce803090a8062dafeb30 | TypeScript | 154 | 3 | export const getRootCSSPropertyValue = (propertyName: string) => {
return getComputedStyle(document.documentElement).getPropertyValue(propertyName);
};
|
de077206c6a55221bb7afc34350b9ecd1a0240e44b80ebf29ad2c0ca262923dc | TypeScript | 161 | 6 | import '@d4l/web-components-library';
import initializeErrorTracking from './utils/errorTracking';
export default async () => {
initializeErrorTracking();
};
|
516b32f7ebdd8b075b18e098622bfff12f4d69f59ecf808197ba7f39eb07819d | TypeScript | 266 | 10 | import { newE2EPage } from '@stencil/core/testing';
describe('app-root', () => {
it('renders', async () => {
const page = await newE2EPage({ url: '/' });
const element = await page.find('app-root');
expect(element).toHaveClass('hydrated');
});
});
|
5cb8472ebfd6a56b1751ec57261c6bca6299c916d60bcadb0df4c8c0e04f7b1e | TypeScript | 277 | 12 | import * as Sentry from '@sentry/browser';
import { SENTRY_DSN, ERROR_TRACKING_ENABLED } from '../custom';
const initializeErrorTracking = () => {
if (ERROR_TRACKING_ENABLED) {
Sentry.init({
dsn: SENTRY_DSN,
});
}
};
export default initializeErrorTracking;
|
70f1ea685e5c656dbafd98ac321a312ca0e1a69c5faf135ebf40be1ad437ed88 | TypeScript | 292 | 9 | /**
* IMPORTANT: THIS FILE IS AUTO GENERATED!
* Changes wont take effect in any release.
* This are just dummy values for use in development.
*/
export const VERSION = '2.0.0';
export const HASH_SHORT = '8test00';
export const HASH_LONG = '8testhash078bc17f56c31a95421e718eefaf6409';
|
7e37b2644f8654885171449a338f383615806d081a003bdfc2e0ef63833e3cbd | TypeScript | 302 | 12 | import {Home} from "./Home";
import {Colocalisation} from "./Colocalisation";
import {Distance} from "./Distance";
import {Density} from "./Density";
import {Alignment} from "./Alignment";
import {Segment} from "./Segment";
export default {
"/home": Home,
"/colocalisation": Colocalisation,
};
|
b8d1a01db75577bd6d829e73aad60d4597b55e39388aacf1c6699dea76cdd0dc | TypeScript | 306 | 11 | import { newE2EPage } from '@stencil/core/testing';
describe('ia-start', () => {
it('renders', async () => {
const page = await newE2EPage();
await page.setContent('<ia-start></ia-start>');
const element = await page.find('ia-start');
expect(element).toHaveClass('hydrated');
});
});
|
d7926c4a21467aaf5f1bb5e392e6354cbc8c0ff3687d4eea9ae90ca5367f44ee | TypeScript | 315 | 11 | import { newE2EPage } from '@stencil/core/testing';
describe('input-number', () => {
it('renders', async () => {
const page = await newE2EPage();
await page.setContent('<ia-input-number />');
const element = await page.find('ia-input-number');
expect(element).toHaveClass('hydrated');
});
});
|
fca1aa35df8c56b472a8c537d75c87bc5a929ff2796f809cd6c374c7c81c41cb | TypeScript | 326 | 11 | import { newE2EPage } from '@stencil/core/testing';
describe('input-boolean', () => {
it('renders', async () => {
const page = await newE2EPage();
await page.setContent('<input-boolean></input-boolean>');
const element = await page.find('input-boolean');
expect(element).toHaveClass('hydrated');
})... |
9610beeff08f8c4648c9a7c6a14558b38c3ce4ec22714b852441548f7eac0ea8 | TypeScript | 327 | 11 | import { newE2EPage } from '@stencil/core/testing';
describe('input-radio', () => {
it('renders', async () => {
const page = await newE2EPage();
await page.setContent('<ia-input-radio></ia-input-radio>');
const element = await page.find('ia-input-radio');
expect(element).toHaveClass('hydrated');
}... |
85a7b2c11198af4cbdd847d30c3b5443d7e5e921d4ad80e377c1cffe30e74f88 | TypeScript | 351 | 11 | import { newE2EPage } from '@stencil/core/testing';
describe('input-postal-code', () => {
it('renders', async () => {
const page = await newE2EPage();
await page.setContent('<ia-input-postal-code></ia-input-postal-code>');
const element = await page.find('ia-input-postal-code');
expect(element).toHa... |
d518eb0aacde8792c4da001a82c01e2782a49ab9157fb65a4f2f8f888f74992c | TypeScript | 351 | 11 | import { newE2EPage } from '@stencil/core/testing';
xdescribe('ai-image-recognizer', () => {
it('renders', async () => {
const page = await newE2EPage();
await page.setContent('<ai-image-recognizer></ai-image-recognizer>');
const element = await page.find('ai-image-recognizer');
expect(element).toHa... |
018e3585c6daffefd0817a823d88869f3c6d2131de779e3d61c44fef2010a4b6 | TypeScript | 355 | 12 | import { newE2EPage } from '@stencil/core/testing';
describe('ia-navigation-header', () => {
it('renders', async () => {
const page = await newE2EPage();
await page.setContent('<ia-navigation-header></ia-navigation-header>');
const element = await page.find('ia-navigation-header');
expect(element).... |
f56fc25fdc3a4f50f68a01fb8f3e09838f1cd24a8468ecce2bf714f940a1774d | TypeScript | 367 | 11 | import { newE2EPage } from '@stencil/core/testing';
describe('input-multiple-choice', () => {
it('renders', async () => {
const page = await newE2EPage();
await page.setContent('<ia-input-multiple-choice></ia-input-multiple-choice>');
const element = await page.find('ia-input-multiple-choice');
expe... |
57c50789a4a9daab8242ab7c17e19040002443b5be6efd0c49209bd433e5c379 | TypeScript | 410 | 13 | import { newSpecPage } from '@stencil/core/testing';
import { ConnectTranslations } from '../connect-translations/connect-translations';
import { AppRoot } from './app-root';
describe('app-root', () => {
it('builds', async () => {
const page = await newSpecPage({
components: [AppRoot, ConnectTranslations],... |
ccc281fa063178e3391ef29e338a28b78d81a8b22c543904675f0d5e7346e2e8 | TypeScript | 439 | 20 | import {ARRenderer} from "../ARRenderer.ts";
/**
* Interface to indicate that the object is an AR object.
*/
export interface ARObject
{
/**
* Set true for AR objects.
*/
isARObject: boolean;
/**
* Called before the scene is rendered in AR.
*
* @param renderer - AR renderer ins... |
06fd39efb46bb0ea05585cb81375e4636b4630575189fffca8e9da537169a05c | TypeScript | 466 | 17 | const NAVIGATOR_PLATFORMS = {
ios: 'iPad|iPhone|iPod',
};
/**
* Helper function to detect current device platform using User Agent sniffing
* @param {String} platform selected platform as part of the navigator platforms config
*/
const isDevice = (platform: string) => {
const regExTestCase = new RegExp(NAVIGATO... |
c1981e512bc6b5d7e2278ac5188852bdcd9fcc6c5dd6ddcd7cb3bc0eabc9b0f8 | TypeScript | 516 | 15 | export const getToday = (): number => {
const year = new Date().getFullYear();
const month = new Date().getMonth() + 1;
const day = new Date().getDate();
let dateString = `${year}-${zeroPadded(month)}-${zeroPadded(day)}`;
let zeroedDate = new Date(dateString);
return zeroedDate.getTime();
};
export const g... |
34be1e62edbc3f7992041ceb24dc5bd2bcee0e304e3b7b2a0bc37fc08f09e410 | TypeScript | 525 | 26 |
/**
* Utils to handler images.
*/
export class ImageUtils
{
/**
* Load an image from URL into a DOM img and get data as bitmap.
*
* @param src - Src of the image, can also be base64 data.
*/
public static loadBitmap(src: string): Promise<ImageBitmap>
{
return new Promise(function(resolve,... |
dcb7e5b5f26488cf22bec5138c2ce1bb84380449d8ffdbe0cf92b45f3fbf51f8 | TypeScript | 573 | 15 | import { WHITELISTED_DATA4LIFE_ORIGINS } from '../custom';
import { MOBILE_ORIGINS } from '../constants';
import { IS_CHARITE } from '../layouts';
export const isIframeContext = () => window.parent && window.parent !== window;
export const isOauthContext = (origin: string) =>
origin &&
(WHITELISTED_DATA4LIFE_ORIG... |
48b4045afee6c4580e4d12445297845df568fbe717040772d4db43a135f7d4c3 | TypeScript | 597 | 31 | declare module "*.glsl" {
const value: string;
export default value;
}
declare module "*.vs" {
const value: string;
export default value;
}
declare module "*.fs" {
const value: string;
export default value;
}
export type XRLightProbe = any;
export type XRDepthInformation = any;
export type XRCPUDepthInforma... |
832e4f467c514457c95b36675f31e274e41cff93b99227140cded38cd4d04486 | TypeScript | 622 | 22 | export const configReducer = (state: any, action: {type: string, value: any}) => {
console.log(state);
if (action.value == "RESET"){
return {};
}
else{
return {...state, [action.type]: action.value};
}
};
export const channelsReducer = (state: any, action: {channel: string, coloc... |
51540294f78b63528faf4b6834e00729aadf52ce03e950c272a6e250343afe37 | TypeScript | 650 | 28 | import { LOCAL_STORAGE_KEYS, QUESTIONNAIRE_VERSION } from '../constants';
import settings, { COMPLETED } from './settings';
//TODO: Use JSON Questionnaire Version
const match = (): boolean => {
const setVersion = sessionStorage.getItem(LOCAL_STORAGE_KEYS.VERSION);
return setVersion === QUESTIONNAIRE_VERSION;
};
c... |
9e9951c21d38b040786b79142468e58bd5feeeb86078f4a6c7e48c7aeed78757 | TypeScript | 651 | 12 | import { LAYOUT } from './custom';
// unfortunately we have to type cast here
// because TS doesn't know that `LAYOUT` is configurable via env vars
export const IS_CHARITE = (LAYOUT as String) === 'CHARITE';
export const IS_D4L = (LAYOUT as String) === 'D4L';
export const IS_COLLABORATION =
(LAYOUT as String).indexO... |
b4dc5d19d111d9ae310a8a9b22cff687cf77b3e571e347d7736d9d81a5debb2d | TypeScript | 711 | 27 | import {Camera, Vector2, Vector3} from "three";
/**
* Class contain math utils to simplify common math operations.
*/
export class MathUtils
{
/**
* Project a point in the world to the screen correct screen position.
*
* @param point - Point to project from world coordinates to screen coordinates.
* @param... |
800dec9a570b1e02cc47bbc5b241b6b766791dab9870fbcd22d3a6da3f66a525 | TypeScript | 764 | 26 | import {Mesh, BufferGeometry, MeshBasicMaterial, Quaternion, WebGLRenderer, Scene, Camera, Group, Material} from "three";
/**
* Billboard group is a group of objetcts that is automatically rotated to always face the camera.
*
* @extends {Mesh}
*/
export class BillboardGroup extends Mesh
{
public constructor()
{... |
17118f5d3bbce102cf28b1a3e1f914c27cff61f067058408f43e60c4cf460853 | TypeScript | 780 | 34 | import { Question } from '@covopen/covquestions-js';
import i18n from '../../../global/utils/i18n';
export const QUESTION_SHARE_DATA = (): Question => {
return {
options: [
{
scores: {},
text: i18n.t(`q_X1_option0`),
value: 'yes',
},
{
scores: {},
value: ... |
10c5153cf3af684f11d6756f293155f4313ff2c40d12fe930ee0e5fa08f03ce7 | TypeScript | 866 | 25 | import { LANGUAGES, LANGUAGE_RESOURCES } from './custom';
import TRANSLATION_DE from './i18n/de.json';
import TRANSLATION_EN from './i18n/en.json';
describe('translations', () => {
it('includes at least the default languages', () => {
const GERMAN = LANGUAGES.find(lang => lang.code === 'de');
const ENGLISH =... |
03f488e21e6bcbe2b342b29bc1f7ffe256886de7c09d83d71ee98e279b316a35 | TypeScript | 933 | 36 |
export const postConfig = (endpoint: string, configState: any) => {
return fetch(`http://127.0.0.1:5000/${endpoint}/`, {
method: 'POST',
body: JSON.stringify(configState),
headers: {
'Content-Type': 'application/json'
},
});
}
export const getLog = async (jobId: string, parameter: ... |
62352c1b32b5a82d48651d1c70e26ec3e127b9f98f473e9d8bfa82f6515ecb6b | TypeScript | 963 | 54 | import { QUESTION } from '../questions';
export const DATE_ANSWERS = [QUESTION.CONTACT_DATE, QUESTION.SYMPTOM_DATE];
export const AGE_VALUESET = {
'0': 'below-40',
'1': '40-50',
'2': '51-60',
'3': '61-70',
'4': '71-80',
'5': 'above-80',
};
export const FEVER_VALUESET = {
'0': 'below-38C',
'1': '38C',... |
557cfe2ce64ccb961e89bb99a12980ca51d4d35131ab3a311ca11d279f511ca9 | TypeScript | 969 | 43 | export const QUESTIONNAIRE_VERSION = '400';
export const KEY_CODES = {
BACKSPACE: 8,
RIGHT: 39,
LEFT: 37,
};
export const TWO_WEEKS = 1000 * 60 * 60 * 24 * 14;
export const ONE_DAY = 1000 * 60 * 60 * 24;
export const ROUTES = {
QUESTIONNAIRE: '/questionnaire',
SUMMARY: '/summary',
LEGAL: '/legal',
IMPR... |
fd67885e20d5f97301c70f0f170ac6cfa7a814af1f3ed57d9c97ae5bce1bd886 | TypeScript | 979 | 32 | import { Config } from '@stencil/core';
import dotenv from 'dotenv';
import nodePolyfills from 'rollup-plugin-node-polyfills';
import visualizer from 'rollup-plugin-visualizer';
dotenv.config();
// https://stenciljs.com/docs/config
export const config: Config = {
// the defined custom stylesheet loads /src/global/... |
e114759f5e4ed938628b088170760a5c2f51c60cbc258abbb2b1f679b4341b6c | TypeScript | 1,014 | 36 | import { newSpecPage, SpecPage } from '@stencil/core/testing';
import { ConnectTranslations } from './connect-translations';
import i18next from '../../global/utils/i18n';
describe('connect translations', () => {
let page: SpecPage = null;
beforeEach(async () => {
jest.clearAllMocks();
page = await newSpe... |
050c201f84b4375cd8005bc9671bd79af7495298ab889ce78ddef0c6f8b583c4 | TypeScript | 1,114 | 37 | import {DataTexture, LuminanceAlphaFormat, LinearFilter, ClampToEdgeWrapping, UnsignedByteType} from "three";
import {XRCPUDepthInformation} from "types.js";
/**
* Stores the raw depth values in a 16 bit value packed texture.
*
* The distance to the camera is stored in millimeters.
*
* This depth has to be unpack... |
9caeecaf950da87cab58cf22b652aa46b75bafab1457e3f9d25cb27c5665c268 | TypeScript | 1,130 | 27 | export {AugmentedMaterial} from "./material/AugmentedMaterial";
export {Angle} from "./object/Angle";
export {BillboardGroup} from "./object/BillboardGroup";
export {Cursor} from "./object/Cursor";
export {Measurement} from "./object/Measurement";
export {PhysicsObject} from "./object/PhysicsObject";
export {LightProb... |
332c23e41faeaf4c2447d321bfa20f9f1b9773c4fe578f9235d6ffb3a61ff953 | TypeScript | 1,199 | 50 | import {WebGLRenderer} from "three";
/**
* XR manager is used to manage wich XR session is currently running and prevent multiple sessions from running concorrently.
*/
export class XRManager
{
/**
* XR session running.
*/
public static session: XRSession = null;
/**
* Start webxr session for immersive-ar ... |
e4cd95735d391303f5a217930393dcd963436e6fd7dfa1fc3b6e86cfb6670f9a | TypeScript | 1,226 | 44 | import { newSpecPage, SpecPage } from '@stencil/core/testing';
import { NavigationHeader } from './navigation-header';
describe('verify card header', () => {
let page: SpecPage = null;
beforeEach(async () => {
jest.clearAllMocks();
page = await newSpecPage({
components: [NavigationHeader],
htm... |
398d9abda33f75c6f87fa17d6a740f5f05151bbf73d4bf1b3adb9f259f5e5b49 | TypeScript | 1,338 | 55 | import {Body} from "cannon-es";
export class VoxelBody extends Body
{
/**
* Indicates if the body is enabled of disabled.
*/
public active = false;
/**
* Voxel enviroment manager to wich this voxel body belongs.
*/
public manager = null;
/**
* Current probability of this voxel belonging to the envirom... |
1aeaf06eacabe284f8e7cc60288a53cdf268d079b0bfb3f9c0cdaaab92bd3573 | TypeScript | 1,369 | 56 | import {Group} from "three";
import {ARRenderer} from "../ARRenderer.ts";
import {ARObject} from "./ARObject.ts";
/**
* Archor groups can be used to attach (anchor) object to the real-world environment.
*
* Uses the "anchor" feature when available to track environment features an ensure accurate positioning.
*
... |
c5916f0919b2e34bb42ff163a301958664ca3b87769783731cb9c54bf5852c3e | TypeScript | 1,552 | 54 | import i18n from 'i18next';
import LanguageDetector from 'i18next-browser-languagedetector';
import { LANGUAGES as SUPPORTED_LANGUAGES, LANGUAGE_RESOURCES } from '../custom';
import * as Sentry from '@sentry/browser';
import { Language } from '@d4l/web-components-library/dist/types/components/LanguageSwitcher/language... |
f75baf56daf02750182b1bc5343408a887a402a083d6935df9a5c1183dff983a | TypeScript | 1,559 | 64 | import {Group, Matrix4} from "three";
import {ARRenderer} from "ARRenderer.ts";
import {ARObject} from "./ARObject.ts";
/**
* Group of objects attached to image tracking.
*
* Must have config.imageTracking enabled
*/
export class ImageTracking extends Group implements ARObject
{
/**
* Index of the tracke... |
cfd81f74e7fa4cbbed4255ad4fcb64c97974d263e5d119a0d0da79c42dd4d32c | TypeScript | 1,742 | 64 | import {Mesh, MeshBasicMaterial, RingGeometry, CircleGeometry, BufferGeometry, Material, Matrix4} from "three";
import {mergeBufferGeometries} from "three/examples/jsm/utils/BufferGeometryUtils.js";
import {ARRenderer} from "../ARRenderer.ts";
import {ARObject} from "./ARObject.ts";
/**
* Cursor is used to interfact ... |
90d0b5a3786ee23eb17a40b22003244ea24e47d8b3c8578a7f31c29e78ec3006 | TypeScript | 1,847 | 71 | import {Group, Matrix4, Mesh, PlaneGeometry, ShadowMaterial, Material, Vector3} from "three";
import {ARRenderer} from "../ARRenderer.ts";
import {AugmentedMaterial} from "../material/AugmentedMaterial.ts";
import {ARObject} from "./ARObject.ts";
/**
* Floor plane can be used for AR objects to cast shadows on.
*
*... |
55d51ff4ab42f477effa80794156f0384f1103fe702d0ecddfb69eb59a880826 | TypeScript | 2,033 | 67 | import { Questionnaire } from '@covopen/covquestions-js';
import { QUESTION_SHARE_DATA } from '../components/views/questionnaire/utils';
import { LOCAL_STORAGE_KEYS } from './constants';
import { DATA_DONATION_URL } from './custom';
export let questionnaire: Questionnaire = undefined;
export let cacheKey: string = '';... |
d13b6447dd8893b7a306af341221e35df611d390dac8a387c4d6bbe3080926f1 | TypeScript | 2,044 | 67 | import {ShaderMaterial, Matrix4, Texture, DataTexture, Vector2} from "three";
import {ARRenderer} from "../ARRenderer";
import AugmentedBasicMaterialFragment from "./AugmentedBasicMaterialFragment.glsl";
import AugmentedBasicMaterialVertex from "./AugmentedBasicMaterialVertex.glsl";
/**
* Shader material used to comb... |
9a79f4ab49afa55f6ca9449f19f244b6957096469869715ca44cc881e7c77637 | TypeScript | 2,128 | 80 | import {Box3, Object3D, Vector3} from "three";
export class ObjectUtils
{
/**
* Resize a object to fit a unitary box and center around the origin.
*
* @param object - Object to center and scale into a unitary box.
*/
public static centerUnitary(object: Object3D): void
{
let box = ObjectUtils.calculateBou... |
384379310f58587e712c8cdbd3eae0f9262a03ea6bb7e461ad02330886d7481a | TypeScript | 2,293 | 71 | import {AmbientLightProbe, DirectionalLight, Group, Vector3} from "three";
import {ARRenderer} from "../ARRenderer.ts";
import {ARObject} from "./ARObject.ts";
/**
* Light probe can be used to cast light the mirror the lighting conditions in real world.
*/
export class LightProbe extends Group implements ARObject
{
... |
dc27a6c833635de8682b01e0482a5c058f676f958efe4a429579e84ebc9ce1e1 | TypeScript | 2,443 | 101 | import {
buildQuestionnaireResponse,
FHIRQuestionnaire,
FHIRQuestionnaireItem,
FHIRQuestionnaireResponse,
FHIRPublicationStatus,
FHIRQuestionnaireResponseStatus,
FHIRValueSet,
} from '../index';
import EXAMPLE_COVAPP_QUESTIONNAIRE from './data/example-covapp-questionnaire.json';
import EXAMPLE_COVAPP_RES... |
942926e79113f3d3950b79b952217ebdd2379d7b3b2ba924fcf9dde7ff9167ca | TypeScript | 2,466 | 101 | /**
* EventManager is used to manage DOM events from multiple element.
*
* Events can be created for multiple DOM objects and managed from a single point.
*/
export class EventManager
{
/**
* Stores all events in the manager, their target and callback.
*
* Format [target, event, callback, active]
*/
priv... |
3cb09b66ca9d592860102109987629d6230e9d993376dca8bb40e9dbfd4d8117 | TypeScript | 2,557 | 100 | import {BufferGeometry, Event, Intersection, Line, Line3, LineBasicMaterial, Matrix4, Object3D, Raycaster, Vector3} from "three";
/**
* Represents a measurement from a point to another.
*/
export class Measurement extends Line
{
/**
* List of points that compose the measurement.
*/
public points: Vector3[] = [... |
88ce67687db5c3e6fba70a558741742707881cf2654acea4d691803d9c161982 | TypeScript | 2,645 | 119 | import {Box3, Camera, Vector3} from "three";
import {Vec3, Box, World} from "cannon-es";
import {VoxelBody} from "./VoxelBody.ts";
export class VoxelEnvironment
{
/**
* Cannon physics world.
*/
public world: World = null;
/**
* Voxel model bouding box.
*
* Coordinates in meters.
*/
public box: Box3 = ... |
39989a10b04ea2cae2c8fbde3d83847f5df5b120066bb028919e0808d5c31e07 | TypeScript | 2,646 | 84 |
/**
* Configuration of the AR renderer.
*
* Indicates the capabilities required by the renderer.
*/
export class ARRendererConfig
{
/**
* If true webgl 2 is used instead of webgl 1.
*/
public useWebGL2?: boolean = false;
/**
* The front-facing camera API enables AR experiences to express their preferen... |
3f33f3aefca25611b58cab862a93df27672bfc4d8a5567743fc4f376c105ff85 | TypeScript | 2,763 | 137 | export type FHIRQuestionnaire = {
status: FHIRPublicationStatus;
resourceType: string;
language?: string;
contained?: FHIRValueSet[];
url?: string;
version?: string;
name?: string;
title?: string;
experimental?: boolean;
date?: string;
publisher?: string;
description?: string;
contact?: FHIRCo... |
28504a4299606be2fbcc55c72c149e5cd167c5d5becc1608502fb41b01bb6327 | TypeScript | 2,867 | 125 | import {BufferGeometry, Line, LineBasicMaterial, Matrix4, Vector3} from "three";
/**
* Represents a angle measurement between three points.
*/
export class Angle extends Line
{
/**
* List of points that compose the measurement.
*/
public points: Vector3[];
public constructor(points: Vector3[])
{
if (poin... |
5825b08a36a8f5d2c8e0c52085b1a440f4db3167fc411cf1c1d288dcb9ab7943 | TypeScript | 3,242 | 130 | export const ACCEPTS_COOKIES = 'accepts_cookies';
export const ACCEPTS_TRACKING = 'accepts_tracking';
export const USER_LANGUAGE = 'user_language';
export const SOURCE = 'source';
export const COMPLETED = 'completed';
type IASettings = {
[key: string]: string;
};
type IAChangeHandlers = Function[];
class Settings ... |
fca6c107a1fd42d6ac4a8602644678a060d4f2266e22c64e59401468faaef260 | TypeScript | 3,636 | 104 | import settings, { ACCEPTS_TRACKING } from './settings';
import { MATOMO_URL, MATOMO_SITE_ID, TRACKING_IS_ENABLED } from '../custom';
import { IS_D4L } from '../layouts';
type TrackingEvent = string[];
interface TrackingEvents {
[key: string]: TrackingEvent;
}
interface MatomoWindow extends Window {
_paq?: Array<... |
9377af2ceb856f9fa4829974ec8e6b5739b1c8c042256ab68dec5e47fb4a6300 | TypeScript | 3,811 | 152 | import {Body, Shape, World} from "cannon-es";
import {Vector3, Mesh, Quaternion, Matrix4, Material, Scene, BufferGeometry, WebGLRenderer, Camera, Group} from "three";
/**
* Wrapper for cannon.js physics objects.
*
* The editor includes tools to create cannon shapes from three.js geometry objects.
*
* Documentatio... |
13f8b0b96c2b47ad5dd3dc5a85f7bf03bcd3e268b999bb65bd663a96cfe0048c | TypeScript | 4,381 | 132 | import {Box2, Box3, CanvasTexture, Matrix4, Vector2, Vector3, Vector4} from "three";
import {XRCPUDepthInformation} from "types.js";
/**
* Canvas texture to stored depth data obtained from the WebXR API.
*
* The data will be processed using CPU and is expected to be slow.
*/
export class DepthCanvasTexture extend... |
6170cb896d5c3397cdf4d72e825a2f747da64809183511e07af585b1b6f6bf7d | TypeScript | 4,452 | 202 | import {BufferGeometry, BufferAttribute, Vector3, Group, Mesh, ShadowMaterial, Material} from "three";
import {AugmentedMaterial} from "../material/AugmentedMaterial.ts";
import {ARRenderer} from "../ARRenderer.ts";
import {ARObject} from "./ARObject.ts";
/**
* Data of a specific plane being managed in the Planes obj... |
ebb27b5ceb59dd94dff75c64f16c09e847c5e6f62e2967c7c4d61fc89966396a | TypeScript | 5,295 | 149 | // This optional code is used to register a service worker.
// register() is not called by default.
// This lets the app load faster on subsequent visits in production, and gives
// it offline capabilities. However, it also means that developers (and users)
// will only see deployed updates on subsequent visits to a p... |
ef775258f9e0812a08f03c55b39dfede755d67f9d70c68df3fe5b06ca0848de7 | TypeScript | 5,970 | 192 | import {ARRenderer} from "ARRenderer";
import {DataTexture, Material, Matrix4, Shader, ShadowMaterial, Vector2, WebGLRenderer} from "three";
/**
* Augmented Material has static tools to transform regular three.js materials into AR materials.
*
* The required code is injected into existing shader code.
*/
export c... |
e520f0d81ef038a07855e722c2d58fb7cee9ef204fb6fc9bb01b607ca3ecc85c | TypeScript | 6,515 | 223 | import {
FHIRQuestionnaire,
FHIRQuestionnaireResponse,
FHIRQuestionnaireItem,
FHIRResponseItem,
FHIRValueSet,
FHIRAnswerValue,
FHIREnableCondition,
} from './types';
const indexArrayBy = (array: any[], keyField: string) =>
array.reduce((obj: any, item: any) => {
obj[item[keyField]] = item;
retu... |
bb32d335d4b41d5fc3e80a22fc55d74c78585fdf44917a2f0cc5b3ccff19a934 | TypeScript | 6,632 | 309 | import {Vec3, Box, Body, World} from "cannon-es";
/**
* Voxel landscape can be used to represent voxel based enviroment.
*/
export class VoxelLandscape
{
public nx = 0;
public ny = 0;
public nz = 0;
public sx = 0;
public sy = 0;
public sz = 0;
public world: World = null;
public map: any[] = [];
publ... |
e9583bd0270046c5dc9e25ccfb906d27a0335eddc1e4fff2c8657ab68bcf94c4 | TypeScript | 8,453 | 217 | import { DATA_DONATION_URL, DATA_DONATION_PUBLIC_KEY } from '../custom';
export let baseUrl = DATA_DONATION_URL;
export let rawPublicKey = DATA_DONATION_PUBLIC_KEY;
// Only use for Development:
// rawPublicKey = `-----BEGIN PUBLIC KEY-----
// MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEA1O2IB+zQH01J6MW+ZpyH/lENnr1ny9... |
d1e659462705860537e8e31ac2eabc88511d3aeee0c079c34b1b2b7a42beb3b6 | TypeScript | 16,674 | 679 | import {Vector2, WebGLRenderer, Scene, PerspectiveCamera, PCFSoftShadowMap, Object3D, ShadowMapType, Raycaster, Intersection} from "three";
import {XRDepthInformation, XRLightProbe} from "types.js";
import {DepthDataTexture} from "./texture/DepthDataTexture";
import {ARObject} from "./object/ARObject";
import {DepthCan... |
e6a08501f3a4c96e7995bf4941cfbe881efd46085a4da1e57776523afda118de | TypeScript | 24,453 | 663 | /* eslint-disable */
/* tslint:disable */
/**
* This is an autogenerated file created by the Stencil compiler.
* It contains typing information for all components that exist in this project.
*/
import { HTMLStencilElement, JSXBase } from "@stencil/core/internal";
import { RouterHistory } from "@stencil/router";
impo... |
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