sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
e32cf65f9f3ef51827272b4082041feb8b0d01e930c7227b9538db247b9c1903 | Shell | 932 | 34 | #!/bin/bash
git clone https://github.com/rcedgar/balifam
for x in 100 1000 10000
do
mkdir balifam$x
mkdir balifam$x/train
mkdir balifam$x/refs
cp balifam/balifam${x}/in/* balifam$x/train
cp balifam/balifam${x}/ref/* balifam$x/refs
for file in balifam$x/train/*
do
mv $file $file.fasta
chmod... |
a310f2d8957b89664efe5ae7fe97137111206586b0c2b866eb942c9e2b657e36 | Shell | 935 | 30 | #!/bin/bash
# Downloads and extracts the Mid-Air dataset
# First argument == path to the desired destination for the dataset
# Second argument == path to download_config.txt
[ -z "$2" ] && echo "ERROR: No download_config argument supplied"
[ -z "$1" ] && echo "ERROR: No dataset destination path argument supplied"
if ... |
56b97710003937c2273846bcac43b5fb3a9073f2500665c5096c2d80c5d6716c | Shell | 938 | 44 | #!/bin/bash
#$ -S /bin/bash
#$ -cwd
#$ -l h_rt=100:0:0
#$ -l h_vmem=18G
#S -l mem_free=18G
#$ -pe smp 1
#SBATCH -o job.%j.out
#SBATCH -J RD_normalization
#SBATCH --ntasks 1
#SBATCH --cpus-per-task 1
#SBATCH --mem 18G
#SBATCH --time=99:99:99
set -oe pipefail
echo "Job started on `hostname` at `date`"
ID=${SGE_TASK_I... |
b3d7d53c568e8b86e6011c227dc2e0e6d91be573c5b04499eca22adc8846a762 | Shell | 949 | 26 | #!/usr/bin/env bash
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "Licen... |
e535011bf98434d46f0380358dfc76b4c85ed21e32f7e41c1962c0ff4216d6a3 | Shell | 952 | 28 | module load plumed/2.6.0
whole_hills_file="HILLS"
equil_time=100000
stride=100000
total_time=$(cat $whole_hills_file | tail -n 5 | head -n 1 | awk '{print $1}')
blocks=$( echo "($total_time - $equil_time) / $stride " | bc -l )
blocks=$(printf "%.0f\n" $blocks)
echo $blocks
for i in $(seq 1 $blocks);
#for i in $(se... |
b79f1027754898b224ba9c05686c6f152b0407023fb397c8fa83957e39c8ef39 | Shell | 968 | 13 | #!/bin/bash
# rmf 4.1.2020, last modified 5.17.2021
# cleaned up 3.1.2022
ls significanceTestingResults/correctedPvals/*LCs_q0.05_phase*BHFDR* | grep -v InOld >> fileList.hypergeomCorrectedResults.phases.txt
ls significanceTestingResults/correctedPvals/*LCs_q0.05_*InOld_maxBG0.5_BHFDR* | grep -v phase >> fileList.hy... |
121c5a9b295d6e80d491db1289f66052f44584f7f1a62ce26e4dcf66d8298f3d | Shell | 969 | 40 | #!/bin/bash
##################################################
# Runs the packages tests
##################################################
# check execution arguments
while [ "$1" != "" ]; do
PARAM=`echo $1 | awk -F= '{print $1}'`
case $PARAM in
-c | --coverage)
export RUN_COVERAGE=1
... |
273ca9bc04181974008a8668b3145c99a548aa1728e1fd0900dd2b8577b8178e | Shell | 969 | 41 | #! /bin/bash
[ $# -lt 3 ] && { echo 'Usage :
$1 = the script to execute
$2 = the folder of first parameter for $1
...'; exit 1; }
# We create the log folder
if [[ -e $5/logs ]];
then
rm -rf $5/logs;
fi;
mkdir -p $5/logs
path=${PWD}/Tools
tmp=$path/tmp/tmp_funcon
if [[ -e $tmp ]];
then
rm -rf $tmp;
fi;
mkd... |
0143a2964875660831cff9da7f47aec586959df24949180243c2a848bf1924ce | Shell | 972 | 23 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... |
6e44e5eebd183567efe9c46850915f765a8e913cc294ce837838b370511cd0f1 | Shell | 977 | 14 | if [ -z "$GALAXY_MEMORY_MB" -a -n "$SLURM_JOB_ID" ]; then
GALAXY_MEMORY_MB=`scontrol -do show job "$SLURM_JOB_ID" | sed 's/.*\( \|^\)Mem=\([0-9][0-9]*\)\( \|$\).*/\2/p;d'` 2>$metadata_directory/memory_statement.log
fi
if [ -n "$SGE_HGR_h_vmem" ]; then
GALAXY_MEMORY_MB_PER_SLOT=`echo "$SGE_HGR_h_vmem" | sed 's/G... |
12284c2ee0f68aa93bc4b42687e166fda3ff5471d22815d0e8c872db5d070a67 | Shell | 995 | 24 | #!/bin/bash
#SBATCH -A C3SE2022-1-16 -p vera
#SBATCH -n 20
#SBATCH -t 5-00:00:00
#SBATCH --mail-user=gustajo@chalmers.se
#SBATCH --mail-type=end # send mail when job ends
# instead of using the "SBATCH -o run_init-X.log" line here,
# include the flag "-o run_init-%A_%a.log" in the sbatch submission command:
# sbatch... |
b3a0a7bbb2179a5da5152dd1d7e87e8986b8295909b7a4d7d24f2caaa279923d | Shell | 1,002 | 22 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
f12700af7b1a92034eac67ce7befaeea459c2d0a6d4ef0f22760d196e60c07bc | Shell | 1,010 | 14 | #!/bin/bash
# rmf 4.22.2020, last modified 6.18.2021
# cleaned up 3.1.2022
# USAGE: python ../../../scripts/runHypergeomTest1.py <fimo results summary file> <GOI list> <all transcripts file> <median expression file> <max background threshold> <FPKM threshold> <threshold for number of genes in GOI group>
# recommend ... |
6faa13eded832fbef4cc7af500a163aa1e6c50c4be9bc2424287af34bc6f8334 | Shell | 1,025 | 24 | #!/bin/bash
#SBATCH -A C3SE2022-1-16 -p vera
#SBATCH -n 20
#SBATCH -t 5-00:00:00
#SBATCH --mail-user=gustajo@chalmers.se
#SBATCH --mail-type=end # send mail when job ends
# instead of using the "SBATCH -o run_init-X.log" line here,
# include the flag "-o run_init-%A_%a.log" in the sbatch submission command:
# sbatch... |
1405fedffe1082777051eaece006f98d80dc25246d90231b688cdb56c6918fed | Shell | 1,026 | 50 | dataset=$1
device=$2
[ -z "${dataset}" ] && dataset="ogbn-arxiv"
[ -z "${device}" ] && device=0
CUDA_VISIBLE_DEVICES=$device \
python main_large.py \
--device 0 \
--dataset $dataset \
--mask_type "mask" \
--mask_rate 0.5 \
--remask_rate 0.5 \
--num_remasking 3 \
--in_drop 0.2 \
--attn_drop 0.2 \
--num_layer... |
c07d85c173c36bce87d79a2a9c9345c12031c9d4c298ff6d10075218b685f806 | Shell | 1,039 | 13 | # rmf 1.25.2021, last modified 4.12.2021
# gene ID and symbol, keep header for first one
awk -F '\t' '{print $1 "\t" $2}' ELCs_q0.05_phase0-12.txt > rhythmic_phase0-12_transcriptIDs.txt
awk -F '\t' 'NR >1 {print $1 "\t" $2}' RLCs_q0.05_phase0-12.txt >> rhythmic_phase0-12_transcriptIDs.txt
awk -F '\t' 'NR >1 {print $1 ... |
75d37da11d1619e05db63e9182702a0faba57c0ec92b81d6cd8a5483e0770652 | Shell | 1,042 | 25 | #! /bin/bash
# Copyright (C) 2021 Eugenio Piasini.
#
# This file is part of metex.
#
# Metex is free software: you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later ve... |
3aa226e5b6a7e59fe99a2c7ed28d60d2cd2f0ef6ab950e180ef103f09f984938 | Shell | 1,043 | 33 | #!/usr/bin/env bash
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "Licen... |
5061f11280a1811e45ccafe7a559407bc3f61c2825ea43f930599d2206704424 | Shell | 1,047 | 25 | #!/bin/bash
#SBATCH -A C3SE2023-1-17 -p vera
#SBATCH -n 20
#SBATCH -t 5-00:00:00
#SBATCH --mail-user=gustajo@chalmers.se
#SBATCH --mail-type=end # send mail when job ends
# instead of using the "SBATCH -o run_init-X.log" line here,
# include the flag "-o run_init-%A_%a.log" in the sbatch submission command:
# sbatch... |
b051ab346e3ab823fbdf0b0f1154efd8b9bf9a4ab861d159cf76f217c0c19ec0 | Shell | 1,050 | 27 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
26b4150c2d915d22022110332f27377bc60e7349240dc07f3a586919ebb23ffe | Shell | 1,052 | 22 | #!/bin/bash
FILE=$1
if [[ $FILE != "ae_photos" && $FILE != "apple2orange" && $FILE != "summer2winter_yosemite" && $FILE != "horse2zebra" && $FILE != "monet2photo" && $FILE != "cezanne2photo" && $FILE != "ukiyoe2photo" && $FILE != "vangogh2photo" && $FILE != "maps" && $FILE != "cityscapes" && $FILE != "facades" && $F... |
5a2da14192cf40387d8f8e92266dda9213c813651b0c5aec8a2e9badf62f5c63 | Shell | 1,052 | 24 | #!/bin/bash
FILES=`ls -1 /dhcp/dhcp_fmri_pipeline/*/*/func/*brainmask.nii.gz | head -n 50`
mkdir -p /dhcp/scanner_positioning/resliced
for FILENAME in $FILES; do
SUBJ=$(echo $FILENAME | cut -d"/" -f4)
SESS=$(echo $FILENAME | cut -d"/" -f5)
echo $SUBJ $SESS
mkdir -p /dhcp/scanner_positioning/resliced/... |
76bda5e592eb2c5568e3825577db31093f07baccf1a3a917dd1dac5aff1ee1ed | Shell | 1,060 | 22 | #!/bin/bash
case $1 in
chunk_ccs) python3 -u chunk_ccs.py ${@:2} ;;
merge_ccs) python3 -u merge_ccs.py ${@:2} ;;
match_contins) python3 -u match_contins.py ${@:2} ;;
seg_graph_ccs) python3 -u seg_graph_ccs.py ${@:2} ;;
chunk_seg_map) python3 -u chunk_seg_map.py ${@:2} ;;
... |
41cf50c564ea8e554612c3d76605a7dcc466f116f448cd1d4bf5ffe92b696262 | Shell | 1,062 | 29 | #this will take a list of pca files with their last frame corresponding to the most extreme of the desired pca vector. it will then cat them together and make them readable to plumed. the occ and beta stuff is to fix plumed's hacky indexing rules.
#second argument $2 is the reference system
#usage
# bash plumed_scr... |
5776eeb2e8a00735c329409184fc75f92d843c8aff4415a1b27e08a10233ae95 | Shell | 1,065 | 32 | #!/bin/bash
HOMFAM="../../data/homfam/train/*.fasta"
BALIFAM100="../../data/balifam100/train/*.fasta"
BALIFAM1000="../../data/balifam1000/train/*.fasta"
BALIFAM10000="../../data/balifam10000/train/*.fasta"
BALIFRAG="../../data/balifrag/train/*.fasta"
mkdir -p alignments
mkdir -p times
run () {
for f in $1
do... |
c4148aa00237539cf2d2b2cc4bb0b033c8896b4c520d518b6c4b2f586b102580 | Shell | 1,069 | 48 | #!/bin/bash
# configuration for Gene Ontology files
GO_OBO_FILE=go-basic.obo
GOSLIM_OBO_FILE=goslim_generic.obo
GO_OBO_DOWNLOAD=http://purl.obolibrary.org/obo/go/go-basic.obo
GOSLIM_OBO_DOWNLOAD=http://www.geneontology.org/ontology/subsets/goslim_generic.obo
# if the gene ontology files don't exist, download them
if... |
856e938dbc719c0296aa3c147580bf226e934770d1046a866a7480fa10ff6e72 | Shell | 1,082 | 29 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
5524a78211666c1935dcb5f12bc9e4b6c76c1d51d64e70c18ebe19f6ae6dd9ec | Shell | 1,084 | 31 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
d2f81b635c0be7050a1770ef60620205373269c5111fe965fff66653eb8f227f | Shell | 1,094 | 26 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
2680c3c7f2ec6ec0a150e3816a48de8467f8591d2cafa9f1453b8027a5d34e1c | Shell | 1,110 | 31 | #!/usr/bin/env bash
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "Licen... |
495b896c1c87a8aec76ef89923e99cf7f2c6dceb53ed3844fc8df72b84b9d1bb | Shell | 1,116 | 19 | python learnMSA/hmm/tf/fit_dirichlet.py ~/src/snakeMSA/data/homstrad/aligned_3Di --alphabet 3di \
--name homstrad_3Di_1_20 --pattern *.fasta --num-runs 5 \
-c 1 --neff-prior-conc 1 --epochs 1000 --verbose --min-count 3
python learnMSA/hmm/tf/fit_dirichlet.py ~/src/snakeMSA/data/homstrad/aligned_3Di --alphabet 3di \... |
583761618c048bf7a415e467fa28e7485557309d4b8f0bdcf4b33e6b4b07c992 | Shell | 1,149 | 32 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
1863ac5a8b2ba4fce72c647e8f01face5c3a28da3db990fd436b26bb442d80ea | Shell | 1,160 | 21 | #!/bin/bash
#SBATCH --output=./mafft.%A_%a.log
#SBATCH -J mafft ... |
87a55b488778d050c7e96ea4db041837eb7cb0842a25ba83a920c571560020ca | Shell | 1,166 | 38 | #OAR -O /srv/tempdd/egermani/Logs/job_%jobid%.output
#OAR -E /srv/tempdd/egermani/Logs/job_%jobid%.error
# Parameters
expe_name="data_selection_neurovault"
main_script=$HOME/Documents/transfer_decoding/src/autoencoder_training.py
echo "Create dir for log"
CURRENTDATE=`date +"%Y-%m-%d"`
echo "currentDate :"
echo $CURR... |
9bc16a8a7c62d9f95b538d4b42f35121ca4293a1da229727ffa997b430da8656 | Shell | 1,168 | 27 | #!/bin/bash
# Build a tsne-cuda Python wheel inside a CUDA build container.
# $1 = CUDA local-version tag (e.g. cu129)
# $2 = base version (e.g. 4.0.0)
# The wheel is written to /wheels. Wheels are py3-none-any: libtsnecuda.so is
# dlopened via ctypes, so a single wheel works across all Python 3.x for a g... |
380c06e727686fbd375720e686a5dc3ef2121e1746daee2c8e9d08b2334afc95 | Shell | 1,169 | 22 | ## Parâmetros
FinetuningStrategy="LM" # LM our Downtask
embedding='RoBERTa' # RoBERTa ou BERT OU BERTweet OU Static
NameTag="RoBERTa"${FinetuningStrategy} #tag dos arquivos e modelos salvos
seed=1234
dirBase="/Users/sergiojunior"
evaltype='normal'
InputAval="dataset_consolidado_ppbase_2.csv" #path to evaluation step
O... |
392f300cc33f2060989a1bbd152433b5705dba3ba7cfb7ddd910d970808c45e3 | Shell | 1,171 | 15 | # rmf 12.2.2019, last modified 4.6.2020
# cleaned up 2.28.2022
# USAGE: python runFimo_userMotifs.py <MEME motif file> <list of MEME motif IDs to run> <sequence file> <outbase> <options>
# fly factor survey
python ../../scripts/runFimo_userMotifs.py ../fly_factor_survey.meme ../motifList_fly_factor_survey.txt ../../p... |
da8562a0a848825c36a8d40ad542e65ebfae77ac8b30509902dffd60c3f7b6e8 | Shell | 1,173 | 32 | #!/usr/bin/env bash
# Regenerates tests/golden from an installed Kraken 2.
#
# Usage: tests/update_golden.sh INSTALL_DIR
#
# Run this only when a change to classification or report output is intended.
# It reruns tests/e2e.sh with E2E_UPDATE_GOLDEN=1, which copies each output to
# tests/golden instead of comparing, the... |
512982cb823cf45302f394adcbc62a4dd2c64f31add7ee326736bbf0fb237cd4 | Shell | 1,174 | 27 | #!/bin/bash
#### All original code is copyright of Graham King, Trinity College Institute of Neuroscience, 12/2021.
# Edit input file below <48preterm or 48term>
# Eidt output .txt file below <48preterm or 48term>
cd /dhcp/fmri_anna_graham/GKgit/head_position/HEADCOIL/participant_files/
while IFS= read -r line
do
... |
55e881f7976724c815da4287206ba50a4f3953905a08338c5004cd6401eecc79 | Shell | 1,181 | 46 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
8101e2c94f79bcc67e896d340759cabc8f4d37ef470768feac9474dbe3edb83f | Shell | 1,197 | 27 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
0eae4e2ea7978b579eb6f52a51e30c8c383ce9215ee8e558515faaea7af8b735 | Shell | 1,201 | 30 | #!/bin/sh
cd /Users/szhang32/Desktop/INTACT6/Mutually_exclusive_index
D1K4Peak="/Users/szhang32/Desktop/INTACT5/peak/D1_H3K4me3_peaks.narrowPeak"
D1K27Peak="/Users/szhang32/Desktop/INTACT6/peak/D1_27me3_Active_merged-W200-G600-FDR0.01-island.bed"
cut -f 1-3 $D1K4Peak > D1_K4.bed
cut -f 1-3 $D1K27Peak > D1_K27.bed
###... |
5ef0eda07a7f18c6294a12ec7f925cd22a934e1401cbf51b48fb4f72e2444336 | Shell | 1,203 | 34 | savename="t5-large"
evalset="test"
batchsize=4
task="NLU"
ckp="~/ivcds/baselines/trained_models/NLU-t5-large/"
echo "Model '"$ckp"' evaluating on task '"$task"' with '"$evalset"' set"
python run_eval.py $ckp $task/$evalset.source predictions/$task-$savename-$evalset.txt \
--reference_path $task/$evalset.target \
... |
eeecbad2f438ff69a83956a29608702130265b82860b3df1100c2ac81691688c | Shell | 1,210 | 29 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
b860488d16c646357ee532547eb030ccf6da579579ffb98a50217f8b92b5ca90 | Shell | 1,215 | 28 | #result stored in datasets/
./generate_training_input.pl all_HLs_human_PC1.txt | gzip -c >all_HLs_human_featTable.txt.gz
Rscript calc_kmer_freqs.R
#manually added 1st column name to seqFeatWithKmerFreqs.txt
gzip seqFeatWithKmerFreqs.txt
#result stored in datasets/
# Benchmark the following models:
# B: basic general ... |
62537b9e7bfb9101c7a99c3983d29aa69243d9d520d0d6a543c989c35b6b2295 | Shell | 1,217 | 37 | #!/bin/bash
#SBATCH --time=1:00:00
#SBATCH --mem=8GB
#SBATCH --cpus-per-task=8
#SBATCH -J fba_2
########## Average FRFs across sites ##########
# Get variables from config
config=/PATH/TO/config
source $config
# Stop on error
set -eu
echo "AVERAGING TISSUE RESPONSES"
pushd $outdir
declare -a sites=("SI" "CUNY" "CBI... |
7777e7e33996296ce1c1b9c39c58e01d4845c6191f9c91f77b905bf2555ef85b | Shell | 1,227 | 43 | #!/bin/bash
#SBATCH --account=rlmolecule
#SBATCH --time=1:00:00
#SBATCH --job-name=gridworld_example
# --- Policy Trainer ---
#SBATCH --nodes=1
#SBATCH --gres=gpu:2
# --- MCTS Rollouts ---
#SBATCH hetjob
#SBATCH -N 1
export WORKING_DIR=/projects/rlmolecule/dbiagion/rlmolecule/examples/gym/
export START_POLICY_SCRIPT="... |
689fd89f5dd1c5faf9a40e166934c8374f076e5e789557b210aae5a339308d08 | Shell | 1,228 | 34 | #!/bin/bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); ... |
d36e0f74c48bc16b67bd776c0d44f682b073ef7ab892dded09552f61a6e30af7 | Shell | 1,229 | 28 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... |
9d1f433787b418d229520ce12ce8dfd2f06f82473691e2e94ef75ea6954b739b | Shell | 1,230 | 30 | #!/bin/sh
cd /Users/szhang32/Desktop/INTACT6/Mutually_exclusive_index
A2aK4Peak="/Users/szhang32/Desktop/INTACT7/peak/A2a_H3K4me3_peaks.narrowPeak"
A2aK27Peak="/Users/szhang32/Desktop/INTACT6/peak/A2a_27me3_Active_merged-W200-G600-FDR0.01-island.bed"
cut -f 1-3 $A2aK4Peak > A2a_K4.bed
cut -f 1-3 $A2aK27Peak > A2a_K27.... |
78bfbab75bf599fd3084ea58f9292bf4a4eaf86e9152a5dc4a4e044fb7db3363 | Shell | 1,250 | 42 | #!/bin/bash
config=/PATH/TO/config
source $config
fn_py="$base/code/fba/ConFixel/confixel/fixels.py" # path to fixels.py from ConFixel
relative_root="$outdir/template" # Where fba template files are
#Get list of metrics, loop through metrics
declare -a metrics=("fd" "fdc" "log_fc" "fa_DKI" "kfa_DKI" "md_DKI" "mk_DKI"... |
59af0256e0b14ab669d40b4d82f3669557c2b3163d0ebed2855386f285129337 | Shell | 1,253 | 24 | #!/bin/bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); y... |
a5a295e2b5bf8b664d4695f5f640dd327e87a966a4de906d9a907e0456e79d29 | Shell | 1,254 | 44 | #!/bin/bash
# RUN PROCESSING STEPS THAT RUN ON PARTICIPANTS INDIVIDUALLY IN PARALLEL
# Get variables from config
config=/PATH/TO/config
source $config
subjs=$@
# Get subject names
pushd $qsiprep_dir
subjs=($(ls sub*/ -d))
subjs=("${subjs[@]///}")
popd
# take the length of the array
# this will be useful for indexin... |
8a4c0c73ca1a326867a22db44a13d57e0111e39c2d85410647d60813d5b3bd56 | Shell | 1,259 | 41 | #!/bin/bash
#SBATCH --partition=debug
#SBATCH --account=rlldrd
#SBATCH --qos=high
#SBATCH --time=1:00:00 # start with 10min for debug
#SBATCH --job-name=gridworld_example_debug
#SBATCH --nodes=1
#SBATCH --gres=gpu:1
#SBATCH --ntasks=9
#SBATCH --cpus-per-task=4
export START_POLICY_SCRIPT="$SLURM_SUBMIT_DIR/$JOB/.polic... |
aeb0a7bc77ab8610a9f26a026d414da7a501ffb2a92dd1769b96518a4b64a4f7 | Shell | 1,262 | 41 | #!/bin/bash
HOMFAM="../../data/homfam/train/*.fasta"
BALIFAM100="../../data/balifam100/train/*.fasta"
BALIFAM1000="../../data/balifam1000/train/*.fasta"
BALIFAM10000="../../data/balifam10000/train/*.fasta"
BALI... |
c31585e076be921371874489dcc0302e7efb4ee6ca8fe10bdfaf12a3a044f8f0 | Shell | 1,279 | 46 | #!/bin/bash
#
# Copyright (c) 2020 10x Genomics, Inc. All rights reserved.
#
# Environment setup for package cellranger-atac-1.2.0.
# Source this file before running.
#
# Determine path to this script; resolve symlinks
SOURCE="${BASH_SOURCE[0]}"
while [ -h "$SOURCE" ]; do
DIR="$( cd -P "$( dirname "$SOURCE" )" > ... |
b4c6c36ae4d244a2744cc2d37b8418bb63a907353b12f4b44014cc97979a321e | Shell | 1,284 | 36 | #!/bin/bash
set -e
source venv/bin/activate
echo "=================================="
python mnist_generate_echo_ds.py bin 8 2 true &
echo "=================================="
python mnist_generate_echo_ds.py bin 12 2 true &
echo "=================================="
python mnist_generate_echo_ds.py bin 16 2 true &
ech... |
02839b45da7d4de3ae014cda92e99d9d54c4027a16694bba0d551e81d2e8a903 | Shell | 1,285 | 30 | #!/bin/sh
cd /Users/szhang32/Desktop/INTACT6/Mutually_exclusive_index
NAcK4Peak="/Users/szhang32/Desktop/public_ChIP_seq/H3K4me3/peak/NAc_H3K4me3_saline_no_input_top_20000_peaks.narrowPeak"
NAcK27Peak="/Users/szhang32/Desktop/public_ChIP_seq/H3K27me3/peak/N2a_H3K27me3_merged-W200-G600-FDR0.01-island.bed"
cut -f 1-3 $N... |
ca8ac17c1b65f1e1c8cf764c41cc08d16c198fcc0a87e194dfbe36d0800ee990 | Shell | 1,285 | 40 | #!/bin/bash
#SBATCH --time=3-00:00:00
#SBATCH --mem=20GB
#SBATCH --cpus-per-task=8
#SBATCH -J smriprep
set -eu # Stop on errors
##### CHANGE THESE VARIABLES AS NEEDED ######
IMG="" # path to smriprep container
scratch="" # path to working directory
#############################################
# Import arguments fro... |
665a4ea4998452da4787cf836c7f850b50c4f0aa2d703252c79c7a0fe1a1378c | Shell | 1,290 | 22 | #!/bin/bash
#SBATCH --output=./mafft.%A_%a.log
#SBATCH -J mafft ... |
e5a6d273c602bbcd1395083fbfc87b4767f0d9d5e999ccdd092ea25fedceb6fc | Shell | 1,290 | 45 | #!/bin/sh
case "$1" in
galaxy|"")
SCRIPT=./run.sh
PORT=8080
LOGFILE=galaxy.log
GRAVITY_LOGFILE=database/gravity/log/gunicorn.log
SUPERVISORD_LOGFILE=database/gravity/supervisor/supervisord.log
;;
reports)
SCRIPT=./run_reports.sh
PORT=9001
L... |
11a7c4aecb0b721c6150063655348472fd9b666f5be0bdfb0dd3e88b288668d5 | Shell | 1,296 | 34 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
0c5afcbff7d2db85a242685240374cb211d918a565cca9454524d0e206165490 | Shell | 1,305 | 29 | #result stored in datasets/
./generate_training_input.pl all_HLs_mouse_PC1.txt | gzip -c >all_HLs_mouse_featTable.txt.gz
Rscript ../calc_kmer_freqs.R #replace input file with that of mouse
#manually added 1st column name to seqFeatWithKmerFreqs.txt
gzip seqFeatWithKmerFreqs.txt
#result stored in datasets/
# Benchmark... |
2d9ca95485e7082d64bb789f2c00dea097bc4b965750a01a2d28c967cf03ebbe | Shell | 1,309 | 71 | #!/bin/bash
source activate_venv.sh
datadir=data/
outdir=data/MLP_validation/
method='resampling'
# method='naive'
nfolds=5
nlayers=3
nunits='200 500 1000'
L2='0 1e-6 1e-3'
dropout=0
nepochs=200
learningrate='1e-1 1e-2 1e-3 1e-4 1e-5'
optimizer='SGD AdamW'
seed=1
if [ $method = 'resampling' ];
then
python3 ml... |
b72baafb2f4128e984f5f35064873d35f8d956e829dab6b4b264fbe8736332a9 | Shell | 1,330 | 22 | #!/bin/bash
#SBATCH --output=./learnMSA.%A_%a.log
#SBATCH -J learnMSA ... |
0af045094a7837ea42b04780bf105996de49b10e839dac1440b7830cf71e307f | Shell | 1,337 | 36 | # Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not u... |
f2f97242f8b3d3884dcac48c3f4c7aedb3681c07f71aad3535fb67c23931e3ee | Shell | 1,339 | 46 | #!/bin/bash
# package the build artifacts
set -ex
. "$(dirname $0)/utils.sh"
# Generate artifacts for release
mk_artifacts() {
cargo build --target "$TARGET" --release
}
mk_tarball() {
# When cross-compiling, use the right `strip` tool on the binary.
local gcc_prefix="$(gcc_prefix)"
# Create a temp... |
0a3b32c26d9844d0c277f4f2ed33b7907d1f3c303fda60823433a8013703fb96 | Shell | 1,360 | 40 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
fa6a003ee3fa6487807a60b4281f4eb697757037f7328d1116e5b2b43241cd0b | Shell | 1,363 | 34 | #!/bin/bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); ... |
8dca7267ed102a08f463c844fba9c9feb9e7a9d6ad3e68983d900c3dfb017a45 | Shell | 1,365 | 41 | #!/bin/bash
#SBATCH --time=12:00:00
#SBATCH --mem=20GB
#SBATCH --cpus-per-task=16
#SBATCH -J fba_8b
########## Segment tracts on FOD template and make masks out of them ##########
# Get variables from config
config=/PATH/TO/config
source $config
# Stop on error
set -eu
echo 'GENERATING PEAKS FROM TEMPLATE FODS'
$mr... |
9edc3bb97062bac2f8451b58c0cfd3df9c27ecd9dfab946e1b570b1bd49a6939 | Shell | 1,366 | 24 | #! /bin/bash
# Using info from
# https://stackoverflow.com/questions/35350607/ffmpeg-add-text-frames-to-the-start-of-video
# https://stackoverflow.com/questions/22710099/ffmpeg-create-blank-screen-with-text-video
# https://stackoverflow.com/questions/8213865/ffmpeg-drawtext-over-multiple-lines
# FIRST RUN ../render_S... |
bfc8cbb040a73321c7c9e2e562f9c968705f34dc91b01b49417dafbf1e92bfbf | Shell | 1,371 | 24 | #!/usr/bin/env bash
CENTOS_VERSION=${1:-"7"} # Shouldn't influence on the results. We need it only to unpack AppImage. Better to keep 7 for manylinux2014
MANYLINUX_VERSION=${2:-"2014"} # This means that downloaded python version has been built in CentOS... |
d4b4ade9c79743b3401cc5a89fd018437d4f034e32ff36ed58e83e11afb5cf34 | Shell | 1,379 | 32 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
3b7f6ac42ae1e73aa8d06d4f89f18b91916f153b030e9c01e15d41959b6b5fc6 | Shell | 1,382 | 27 | #!/bin/bash
# Copyright 2019 The Go Authors. All rights reserved.
# Use of this source code is governed by a BSD-style
# license that can be found in the LICENSE file.
set -e
shopt -s nullglob
knownfolders="$(printf '%s\n' "/mnt/c/Program Files (x86)/Windows Kits/"/*/Include/*/um/KnownFolders.h | sort -Vr | head -n ... |
e90e313493b39721cdce4b2f8f5fbb737e11c0502a1dcf3f9f35af7d2c774140 | Shell | 1,384 | 47 | #!/bin/bash
# ----------------------------------------------------------------------------
# build_AHBA_data
# Author: Antoine Beauchamp
#
# Pipeline to generate necessary data files from the Allen Human Brain Atlas
#
# Pipeline steps:
# 1. Download the AHBA ontology and microarray data sets from the web
# 2. Build th... |
11b957b89c255b961cb8e3ae89fe327cd37c43f6109e5a6884e03ac5037da570 | Shell | 1,396 | 70 | #!/bin/bash
echo "------------ start --------"
root_path=/li_zhengdao/dataset
proj_path=/li_zhengdao/github/GGN
k=$1
if [ ! -n "$k" ];then
k="train"
fi
echo $k
pid=$(ps -ef | grep seizure | grep -v grep | awk '{print $2}')
if [ -n "$pid" ]; then
echo "running seizure: $pid"
kill -9 $pid
echo "killed!... |
7f3328f2d16db56142692a59a7d145ab18fb7c5d605924f1b06efacbb65c9b55 | Shell | 1,400 | 42 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
37786d8709e79240585b0fe361b9461cc0fc809e7b55650c92024f1f9a9e1a97 | Shell | 1,405 | 45 | #!/bin/bash
# The IPython image starts as privileged user.
# The parent Galaxy server is mounting data into /import with the same
# permissions as the Galaxy server is running on.
# In case of 1450 as UID and GID we are fine, because our preconfigured ipython
# user owns this UID/GID.
# (1450 is the user id the Gala... |
f29bfa8ae2f12f6f00356b4542680bc0ba9904bdaa7be8e24426e6308643ec11 | Shell | 1,411 | 46 | #!/usr/bin/env bash
# -*- coding: utf-8 -*-
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License,... |
a52bebca0801a4ee3c442baa5a29532cc77eee111c3f350cf6ea8797a5875208 | Shell | 1,412 | 41 | #!/usr/bin/env bash
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "Licen... |
b6670dbeaf562d146efbf20503bf124886e2a145b12805a3e57f838f4d716db5 | Shell | 1,415 | 44 | #!/bin/sh
#BSUB -J D1_A2a_K4_const_TSS_density_plot
#BSUB -oo D1_A2a_K4_const_TSS_density_plot.o
#BSUB -eo D1_A2a_K4_const_TSS_density_plot.e
#BSUB -B
#BSUB -N
#BSUB -M 10000
#BSUB -u Shuo.Zhang@Pennmedicine.upenn.edu
#BSUB -W 20:00
date
cd /project/eheller_itmat_lab/shuo/INTACT5/density_plot
regions="/project/ehe... |
77e99932f650647de241f239e7786b1fbd9955832d722e71c46ef46cd7c78ea6 | Shell | 1,419 | 56 | #OAR -O /srv/tempdd/egermani/Logs/job_%jobid%.output
#OAR -E /srv/tempdd/egermani/Logs/job_%jobid%.error
output_file=$PATHLOG/$OAR_JOB_ID.txt
# Parameters
expe_name="cnn_training"
main_script=/srv/tempdd/egermani/self_taught_decoding/src/cnn_training.py
echo "Create dir for log"
CURRENTDATE=`date +"%Y-%m-%d"`
echo "... |
82af0f24c922f52d19fdd6832a9a5505624fc9442f7a4c92e31d9966ed9f00f4 | Shell | 1,425 | 43 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
2b5e6f185030853fd45fe261f5121282c7a01d41b03095f7d7965c9b14d751e5 | Shell | 1,426 | 36 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
5add3081dc61a3c139a1b55e49505a9cc8c0c223b04549cce94763c8a67e7f51 | Shell | 1,426 | 38 | #!/bin/bash
#SBATCH --time=3-00:00:00
#SBATCH --mem=20GB
#SBATCH --cpus-per-task=8
#SBATCH -J qsiprep
set -eu # Stop on errors
##### CHANGE THESE VARIABLES AS NEEDED ######
IMG='' # put path to qsiprep docker image here
scratch='' # assign working directory
#############################################
# Import argum... |
1f273af9aacaf76343a03a7e5b9b2edc1e7d6f4d36c400ef42c591026f543fd1 | Shell | 1,430 | 30 | #!/bin/bash
#SBATCH --time=24:00:00
#SBATCH --mem=64GB
#SBATCH --cpus-per-task=16
#SBATCH -J fba_8a
########## Run tractography on FOD template and smooth fixel-metrics based on fixel connectivity ##########
# Get variables from config
config=/PATH/TO/config
source $config
# Stop on error
set -eu
echo "GENERATING T... |
29e4d5e99e245f2ad4517b52487f33bf26922dc841038df1ecdf42b373b3c8c2 | Shell | 1,430 | 61 | #! /bin/bash
[ $# -lt 3 ] && { echo 'Usage :
$1 = the script to execute
$2 = the folder of first parameter for $1
...'; exit 1; }
# We create the log folder
if [[ -e "$3"/logs ]];
then
rm -rf "$3"/logs;
fi;
mkdir -p "$3"/logs
path=${PWD}/Tools
tmp="$path"/tmp/tmp_disco
if [[ -e "$tmp" ]];
then
rm -rf "$tm... |
7a33512a918861e9abd3a0dc3c9fa436288337f35b348e1073dbcad98c035dcc | Shell | 1,442 | 31 | #!/bin/bash
#### All original code is copyright of Graham King, Trinity College Institute of Neuroscience, 12/2021.
# snrTRUE split_a/split_b are sampled to give SNRtrue values:
# Graham King 08/2022 TCIN
cd /dhcp/fmri_anna_graham/GKgit/head_position/HEADCOIL/participant_files/
while IFS= read -r line
do
SUBJ=$... |
7135875da7009a06ff04e091a47ab2d7a1003a7079e41d1b024d498adfba80b5 | Shell | 1,448 | 38 | #!/bin/bash
#SBATCH --time=48:00:00
#SBATCH --mem=100GB
#SBATCH --cpus-per-task=32
#SBATCH -J fba_4
########## Generate study-specific FOD template ##########
# Get variables from config
config=/PATH/TO/config
source $config
# Stop on error
set -eu
# Make directories for template subject inputs
mkdir -p $outdir/tem... |
e53d5a904ccf2f545835a7b38092ec20d03e9d90e4b1916bed2b0e14ab1d4447 | Shell | 1,453 | 34 | #!/bin/bash
#SBATCH --time=1:00:00
#SBATCH --mem=12GB
#SBATCH --cpus-per-task=8
#SBATCH -J fba_5
########## Register subjects to FOD template ##########
# Get variables from config
config=/PATH/TO/config
source $config
# Stop on error
set -eu
# Get subject name from job array
args=($@)
subjs=(${args[@]:0})
sub=${su... |
0a600c00a6d52854cb1cd77f0c4b37c64815779158b97d5d7bddf2e9552b1353 | Shell | 1,455 | 58 | #!/bin/bash
# Repackage SPM12 upstream sources, strip unnecessary files, and convert zip into
# tar.gz archive.
#
# The script also determines a version of the respective SPM source snapshot.
#
#
# Usage:
# repack.sh <spm12.zip>
#
set -e
ORIGSRC=$1
if [ -z "$ORIGSRC" ]; then
echo "No upstream sources given."
exit... |
15c0e223b7f738412660daa00d136e6609ba0b579c6a4734bb1f619d48aeb164 | Shell | 1,456 | 34 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
80a529266d9276399adc013875d8951979a960efb2e495b47084ea44c6ee1a8e | Shell | 1,456 | 35 | #plumed driver --mf_xtc memb_prod1.xtc --plumed plumed_scripts/reweight.dat --kt 2.57748353
bmax=`awk 'BEGIN{max=0.}{if($1!="#!" && $4>max)max=$4}END{print max}' COLVAR_reweighted`
pca1_max=`awk 'BEGIN{max=0.}{if($1!="#!" && $2>max)max=$2}END{print max}' COLVAR_reweighted`
pca2_max=`awk 'BEGIN{max=0.}{if($1!="#!" &&... |
01d5e6a265d64ce32f90c840256a2c499463b69e0d25059fbf9788cfee2bf88e | Shell | 1,470 | 40 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
a6ea60c45734569dbc411864f0935f3e71db76c009d9c8df7447614cf44af7cd | Shell | 1,470 | 36 | #!/usr/bin/env bash
# Builds dist/design-sync/ui — the compiled @humansignal/ui package design-sync bundles.
# Run from services/lso/web. Output: index.cjs + icons.cjs + style.css + assets/ (vite, same
# pipeline as the reference storybook) and types/ (tsc declarations).
set -euo pipefail
cd "$(dirname "$0")/../.."
OU... |
704b899b76a12ec4a84dfd2b49f6188ec682176de2d4c2787d8d4eaad6653a5d | Shell | 1,480 | 45 | #!/usr/bin/env bash
# -*- coding: utf-8 -*-
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License,... |
1cb226df471cca282d9d44fdf1cdecfd71b6ceea75e9343e03bad76acc0a5666 | Shell | 1,483 | 39 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
49d82bca6742fc0c10ac80e8bb0c8a9c5286f0e57cf4bcc1b064cbd6c45baec5 | Shell | 1,496 | 41 | #!/usr/bin/env bash
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "Lic... |
453a5ee1620b2af2bb7955f8e60ba49696e0e67adc46a851011dcaccde2be400 | Shell | 1,502 | 50 | #!/bin/bash
#$ -S /bin/bash
#$ -cwd
#$ -l h_rt=100:0:0
#$ -l h_vmem=4G
#S -l mem_free=4G
#$ -pe smp 1
#SBATCH -o job.%j.out
#SBATCH -J mosdepth
#SBATCH --ntasks 1
#SBATCH --cpus-per-task 1
#SBATCH --mem 4G
#SBATCH --time=99:99:99
set -oe pipefail
echo "Job started on `hostname` at `date`"
ID=${SGE_TASK_ID}${SLURM_AR... |
f57227b3b4a2b24ba709be25baee4468c0900be8c6d9dfebe4b111754ce1c526 | Shell | 1,505 | 42 | #!/bin/sh
#BSUB -J merged_QN_H3K27me3_const_TSS_density_plot
#BSUB -oo merged_QN_H3K27me3_const_TSS_density_plot.o
#BSUB -eo merged_QN_H3K27me3_const_TSS_density_plot.e
#BSUB -B
#BSUB -N
#BSUB -M 10000
#BSUB -u Shuo.Zhang@Pennmedicine.upenn.edu
#BSUB -W 20:00
date
cd /project/eheller_itmat_lab/shuo/INTACT6/density_... |
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