| set -euo pipefail | |
| SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)" | |
| source "${SCRIPT_DIR}/../00_setup/env.sh" | |
| python3 "${SCRIPT_DIR}/compute_sequence_metrics.py" \ | |
| --dataset_dir "${DEEPSTARR_DIR}" \ | |
| --reference_split valid \ | |
| --input "ar_unconditional=${RESULT_ROOT}/ar_unconditional_scoring/scoring_details.jsonl" \ | |
| --input "ar_conditioned=${RESULT_ROOT}/ar_conditioned_scoring/scoring_details.jsonl" \ | |
| --input "diffusion_conditioned=${RESULT_ROOT}/diffusion_valid_predictor/diffusion_scoring_details.jsonl" \ | |
| --input "random_gc_matched=${RESULT_ROOT}/controls/random_gc_matched.jsonl" \ | |
| --output_dir "${RESULT_ROOT}/sequence_metrics" \ | |
| --k_values 3,4 | |