code
stringlengths
101
5.91M
def is_per_channel(qscheme): return (qscheme in [torch.per_channel_affine, torch.per_channel_affine_float_qparams, torch.per_channel_symmetric])
def post_process_result(result): if (result == float_info.max).any(): mask = (result == float_info.max) result[mask] = 0 result = np.ma.MaskedArray(result, mask) return result
def benchmark_backward(fn, *inputs, grad=None, repeats=10, desc='', verbose=True, amp=False, amp_dtype=torch.float16, **kwinputs): if verbose: print(desc, '- Backward pass') with torch.autocast(device_type='cuda', dtype=amp_dtype, enabled=amp): y = fn(*inputs, **kwinputs) if (type(y) is ...
def set_weight_decay(model, skip_list=(), skip_keywords=(), lr=None): assert lr has_decay = [] no_decay = [] skip_keywords_prefix = [] for (name, module) in model.named_modules(): if isinstance(module, nn.LayerNorm): skip_keywords_prefix.append(name) continue ...
_utils.in_tempdir def test_dory_estimate_query_abundance(location): copy_dory_catlas() copy_dory_head() args = '-k 21 dory_k21 --contigs-db dory_k21/bcalm.unitigs.db'.split() assert (index_cdbg_by_kmer.main(args) == 0) args = 'dory_k21 dory-head.fa -o abundances.csv -k 21'.split() print('** runn...
_datapipe('concat') class ConcaterMapDataPipe(MapDataPipe): datapipes: Tuple[MapDataPipe] length: int def __init__(self, *datapipes: MapDataPipe): if (len(datapipes) == 0): raise ValueError('Expected at least one DataPipe, but got nothing') if (not all((isinstance(dp, MapDataPipe...
def main(config): device = torch.device(('cuda' if torch.cuda.is_available() else 'cpu')) model = UGCVQA_NR_model.resnet50(pretrained=True) model = model.to(device) print('loading the trained model') model.load_state_dict(torch.load(config.trained_model)) if (config.database == 'UGCCompressed'):...
def _init_dist_slurm(backend, port=29500, **kwargs): proc_id = int(os.environ['SLURM_PROCID']) ntasks = int(os.environ['SLURM_NTASKS']) node_list = os.environ['SLURM_NODELIST'] num_gpus = torch.cuda.device_count() torch.cuda.set_device((proc_id % num_gpus)) addr = subprocess.getoutput('scontrol ...
_function_dispatch(_logspace_dispatcher) def logspace(start, stop, num=50, endpoint=True, base=10.0, dtype=None, axis=0): y = linspace(start, stop, num=num, endpoint=endpoint, axis=axis) if (dtype is None): return _nx.power(base, y) return _nx.power(base, y).astype(dtype, copy=False)
def test_sis_model(): params = {'model': 'SIS', 'b': 0.00208, 'd': 0.01, 'c': 1, 'runs': 10, 'steps': 5000, 'diffusion': 'max', 'method': 'add_edge_random', 'k': 15, 'seed': 1, 'plot_transition': False, 'gif_animation': False} graph = karate() ds = Diffusion(graph, **params) increased_diffusion = ds.run...
_PREDICTOR_REGISTRY.register() class DensePoseChartWithConfidencePredictor(DensePoseChartConfidencePredictorMixin, DensePoseChartPredictor): pass
class MultiHeadAttention(nn.Module): def __init__(self, dim: int=512, num_attention_heads: int=8) -> None: super(MultiHeadAttention, self).__init__() assert ((dim % num_attention_heads) == 0), 'hidden_dim % num_attention_heads should be zero.' self.d_head = int((dim / num_attention_heads)) ...
def get_logical_forms_from_entities(entities): logical_forms = [] if (not entities): return [] for entity in entities: logical_forms.extend(webqsp_enum_one_hop_one_entity_candidates(entity)) lfs_2 = webqsp_enum_two_hop_one_entity_candidates(entity) logical_forms.extend(lfs_2)...
class AppendableSequenceTester(object): def empty_list(self): pass def reference_list(self): pass def test_append_getitem(self, empty_list, reference_list): lst = empty_list item = reference_list[0] lst.append(item) assert (lst[0] == item) def test_extend(...
def _decode_record(record, name_to_features): example = tf.parse_single_example(record, name_to_features) for name in list(example.keys()): t = example[name] if (t.dtype == tf.int64): t = tf.to_int32(t) example[name] = t return example
def create_sentencepiece(filenames, model_type, vocab_size, output_prefix): sp.SentencePieceTrainer.train(input=','.join(filenames), model_prefix=output_prefix, vocab_size=vocab_size, model_type=model_type, character_coverage=1.0, unk_id=UNK_TOKEN_ID, bos_id=BOS_TOKEN_ID, eos_id=EOS_TOKEN_ID, pad_id=PAD_TOKEN_ID) ...
def recall_at_k(actual, predicted, topk): sum_recall = 0.0 num_users = len(predicted) true_users = 0 for i in range(num_users): act_set = set(actual[i]) pred_set = set(predicted[i][:topk]) if (len(act_set) != 0): sum_recall += (len((act_set & pred_set)) / float(len(ac...
class Example(UniqueRepresentation, Parent): def __init__(self): self._set = [Integer(_) for _ in [1, 2, 3]] Parent.__init__(self, facade=IntegerRing(), category=FiniteEnumeratedSets()) def _repr_(self): return 'An example of a finite enumerated set: {1,2,3}' def __contains__(self, o...
def _move_files(dirname, file_prefixes): print(file_prefixes) for prefix in file_prefixes: matching = glob.glob('{}_*'.format(osp.join(dirname, prefix))) print(matching) if (len(matching) != 1): raise NotImplementedError ext = osp.splitext(matching[0])[1] outp...
class StopwatchMeter(Meter): def __init__(self, round: Optional[int]=None): self.round = round self.sum = 0 self.n = 0 self.start_time = None def start(self): self.start_time = time.perf_counter() def stop(self, n=1): if (self.start_time is not None): ...
class train_discriminator(): def __init__(self, real_data, latent_data, opt_d, generator, discriminator, device, minority_class, majority_class): self.real_data = real_data self.latent_data = latent_data self.opt_d = opt_d self.discriminator = discriminator self.generator = g...
_cmd('python') class Python(): ctx = CONTEXT pythonpath = Option(['--pythonpath', '-p'], metavar='PYTHONPATH', default=None, help='Paths to prepend to PYTHONPATH') extra_argv = Argument(['extra_argv'], nargs=(- 1), metavar='ARGS', required=False) def _setup(cls, pythonpath, **kwargs): vals = Bui...
class TestFeatureImportance(unittest.TestCase): def test(self): exp = FeatureImportance(mode='classification') exp.add(instance=pd.DataFrame([['a', 'b'], ['c', 'd']], columns=['col 1', 'col 2']), target_label=0, feature_names=['a', 'b', 'c'], feature_values=[1, 2, 3], importance_scores=[0.1, 0.2, 0....
.parametrize('impl', MKL_AND_CUBLAS) def test_4x4(impl): A_desc = dace.float32[(8, 12, 5, 3)] B_desc = dace.float32[(8, 12, 3, 6)] C_desc = dace.float32[(8, 12, 5, 6)] with change_default(blas, impl): def test_4x4(A: A_desc, B: B_desc, C: C_desc): C[:] = np.einsum('abik,abkj->abij', ...
class Argument(): __slots__ = ('name', 'typename', 'direction', 'role') def __init__(self, name, typename, direction, role='default'): self.name = name self.typename = typename self.direction = direction self.role = role
def register_coco_instances(name, metadata, json_file, image_root): DatasetCatalog.register(name, (lambda : load_coco_json(json_file, image_root, name))) MetadataCatalog.get(name).set(json_file=json_file, image_root=image_root, evaluator_type='coco', **metadata)
def normalize_index(phyche_index, is_convert_dict=False): normalize_phyche_value = [] for phyche_value in phyche_index: average_phyche_value = ((sum(phyche_value) * 1.0) / len(phyche_value)) sd_phyche = standard_deviation(phyche_value) normalize_phyche_value.append([round(((e - average_p...
_serialization_tests def test_keras_testing_util_layer_test_multidim(kernel_cls, batch_size, n_dims, n_components): kernel = kernel_cls() tf.keras.utils.get_custom_objects()['QuadratureFourierFeatures'] = QuadratureFourierFeatures layer_test(QuadratureFourierFeatures, kwargs={'kernel': kernel, 'n_components...
class TruncExpon(ReferenceDistribution): def __init__(self, *, b): super().__init__(b=b) def _support(self, b): return (0, b) def _pdf(self, x, b): return ((- mp.exp((- x))) / mp.expm1((- b))) def _sf(self, x, b): return ((mp.exp((- b)) - mp.exp((- x))) / mp.expm1((- b)))
class FrozenRequirement(object): def __init__(self, name, req, editable, comments=()): self.name = name self.req = req self.editable = editable self.comments = comments _rev_re = re.compile('-r(\\d+)$') _date_re = re.compile('-(20\\d\\d\\d\\d\\d\\d)$') def from_dist(cls, ...
def get_weights(weights): weights_list = {'resnet': '1Bw4gUsRBxy8XZDGchPJ_URQjbHItikjw', 'resnet18': '1k_v1RrDO6da_NDhBtMZL5c0QSogCmiRn', 'vgg11': '1vZcB-NaPUCovVA-pH-g-3NNJuUA948ni'} url = f' output = f'./{weights}.pkl' gdown.download(url, output, quiet=False)
def get_dm_mujoco(): global _DM_MUJOCO_MODULE if _DM_MUJOCO_MODULE: return _DM_MUJOCO_MODULE try: from dm_control import mujoco except ImportError: print('Failed to import dm_control.mujoco. Ensure that dm_control (using MuJoCo v2.00) is installed.', file=sys.stderr) sys....
def frechet_distance(mu, cov, mu2, cov2): (cc, _) = linalg.sqrtm(np.dot(cov, cov2), disp=False) dist = (np.sum(((mu - mu2) ** 2)) + np.trace(((cov + cov2) - (2 * cc)))) return np.real(dist)
class SearchAlgorithm(): def __init__(self) -> None: pass def search(self, pattern: str, text: str) -> int: pass
class Replace(Common): def __init__(self, log_level=Log.info): self.__numNode = 0 self.__ar = [] self.LogLevel = log_level def __calc(self, plan, param, queryid, planid, depth): def get_children_plan_rows(plan): _X = [[], []] _NP = [[], []] _NP...
class DoubleSignal(Signal): def set(self, value) -> None: sim.simSetDoubleSignal(self._name, value) def get(self) -> float: (ret, value) = sim.simGetDoubleSignal(self._name) self._check_signal(ret, 'double') return value def clear(self) -> int: return sim.simClearDoub...
def models_all_close(*models): assert (len(models) > 1) for model in models[1:]: are_same_models(models[0], model)
def main(args): if (not os.path.exists('./experiments/pretrained_models/NAFNet-REDS-width64.pth')): gdown.download(' './experiments/pretrained_models/', quiet=False) opt_path = '/opt/NAFNet/options/test/REDS/NAFNet-width64.yml' opt = parse(opt_path, is_train=False) opt['dist'] = False model ...
class _CVObjects(_Constraint): def __init__(self): super().__init__() self._constraints = [Interval(Integral, 2, None, closed='left'), HasMethods(['split', 'get_n_splits']), _IterablesNotString(), _NoneConstraint()] def is_satisfied_by(self, val): return any((c.is_satisfied_by(val) for c...
def patch_runtime(): from .runtime import BlockReference, Macro BlockReference.__call__ = wrap_block_reference_call(BlockReference.__call__) Macro._invoke = wrap_macro_invoke(Macro._invoke)
class Sequence(object): def __getitem__(self, index): raise NotImplementedError def __len__(self): raise NotImplementedError def on_epoch_end(self): pass
def build_default_pretrains(default_treebanks): default_pretrains = dict(default_treebanks) for lang in no_pretrain_languages: default_pretrains.pop(lang, None) for lang in specific_default_pretrains.keys(): default_pretrains[lang] = specific_default_pretrains[lang] return default_pretra...
def test_rosetta(): try: problem = flexs.landscapes.rosetta.registry()['3msi'] landscape = flexs.landscapes.RosettaFolding(**problem['params']) seq_length = len(landscape.wt_pose.sequence()) test_seqs = s_utils.generate_random_sequences(seq_length, 100, s_utils.AAS) landscape...
def pad_lr(x, fsize, fshift): M = num_frames(len(x), fsize, fshift) pad = (fsize - fshift) T = (len(x) + (2 * pad)) r = ((((M - 1) * fshift) + fsize) - T) return (pad, (pad + r))
class TestModels(TestCase): keep_initializers_as_inputs = False from torch.onnx.symbolic_helper import _export_onnx_opset_version opset_version = _export_onnx_opset_version def exportTest(self, model, inputs, rtol=0.01, atol=1e-07): with torch.onnx.select_model_mode_for_export(model, None): ...
class MIRNet(nn.Module): def __init__(self, in_channels=3, out_channels=3, n_feat=64, kernel_size=3, stride=2, n_RRG=3, n_MSRB=2, height=3, width=2, bias=False): super(MIRNet, self).__init__() self.conv_in = nn.Conv2d(in_channels, n_feat, kernel_size=kernel_size, padding=((kernel_size - 1) // 2), bi...
def main(): args = parse_args() print('Called with args:') print(args) if (not torch.cuda.is_available()): sys.exit('Need a CUDA device to run the code.') if (args.cuda or (cfg.NUM_GPUS > 0)): cfg.CUDA = True else: raise ValueError('Need Cuda device to run !') if (arg...
def test_multi_objective_set_normalized(): multi_cdv_tmp = MultiObjectiveCDV(analytical, max_empirical_losses=max_empirical_losses) multi_cdv_tmp.set_normalized(True) (final_loss, alphas) = multi_cdv_tmp.get_descent_vector(losses, gradient) assert (final_loss.data == ((alphas[0] * max_empirical_loss_1) ...
class SGDOptimizer(BaseOptimizer): def _apply_dense(self, cache): g_t = cache['g_t'] cache['s_t'] = (self.learning_rate * g_t) return cache def _apply_sparse(self, cache): (g_t, idxs) = (cache['g_t'], cache['idxs']) (idxs, idxs_) = tf.unique(idxs) g_t_ = tf.unsort...
def _print_net(net): for i in net.external_input: print('Input: {}'.format(i)) for i in net.external_output: print('Output: {}'.format(i)) for op in net.op: print('Op {}'.format(op.type)) for x in op.input: print(' input: {}'.format(x)) for y in op.output...
class DenseBlock(nn.Module): def __init__(self, h, kernel_size=(3, 3), depth=4): super(DenseBlock, self).__init__() self.h = h self.depth = depth self.dense_block = nn.ModuleList([]) for i in range(depth): dil = (2 ** i) dense_conv = nn.Sequential(nn.C...
class PrimeNumbers_Inherits(PrimeNumbers_Abstract): def __init__(self): super().__init__() self._populate_coercion_lists_(embedding=IntegerRing()) def __contains__(self, p): return ((isinstance(p, self.element_class) and (p.parent() is self)) or (isinstance(p, Integer) and p.is_prime()))...
.torch def test_can_get_windowed_sequence(sequential_dataset: SequentialDataset): sd = TorchSequentialDataset(sequential_dataset, max_sequence_length=3, sliding_window_step=2, padding_value=(- 1)) assert (len(sd) == 6) _compare_sequence(sd, 0, 'item_id', [(- 1), 0, 1]) _compare_sequence(sd, 1, 'item_id'...
def isSession(timestamp1, timestamp2): t1 = datetime.fromtimestamp(timestamp1) t2 = datetime.fromtimestamp(timestamp2) delta_sec = ((((t1 - t2).days * 24) * 3600) + (t1 - t2).seconds) return (delta_sec < (30 * 60))
def load_op_dep_graph(fname): with open(fname, 'r') as stream: result = defaultdict(set) for op in yaml.safe_load(stream): op_name = canonical_name(op['name']) for dep in op.get('depends', []): dep_name = canonical_name(dep['name']) result[op_n...
def is_valid_parameter(object): has_value = hasattr(object, 'value') has_set_value = hasattr(object, 'set_value') has_floating = hasattr(object, 'floating') return (has_value and has_set_value and has_floating)
_utils.test() def test_func_default_value(): def bar(s, t=1): return (s + t) def foo() -> ti.i32: return bar(1) assert (foo() == 2)
def process_grouped_by_first_item(lst): groups = defaultdict(list) started = False last_group = None for (first, *rest) in lst: rest = (rest[0] if (len(rest) == 1) else rest) if (started and (first != last_group)): (yield (last_group, groups[last_group])) assert (...
def train(args): set_seed(args.seed) print('initializing model') config = AutoConfig.from_pretrained(args.model) config.gradient_checkpointing = True config.use_cache = False model = AutoModelForCausalLM.from_pretrained(args.model, config=config) model.train() model.gradient_checkpointin...
def digraph_one_root(): classifier = HierarchicalClassifier() classifier.logger_ = logging.getLogger('HC') classifier.hierarchy_ = nx.DiGraph([('a', 'b'), ('b', 'c'), ('c', 'd')]) return classifier
class BioGptForTokenClassification(metaclass=DummyObject): _backends = ['torch'] def __init__(self, *args, **kwargs): requires_backends(self, ['torch'])
def verify_task_dof_maps(dof_maps, id_map, field, use_expand_dofs=False, verbose=False): timer = Timer(start=True) if verbose: output('verifying...') output('total number of DOFs:', field.n_nod) output('number of tasks:', len(dof_maps)) count = count2 = 0 dofs = [] if use_exp...
def composite(image1, image2, mask): image = image2.copy() image.paste(image1, None, mask) return image
def auto_augment_policy(name='original'): hparams = _HPARAMS_DEFAULT if (name == 'original'): return auto_augment_policy_original(hparams) elif (name == 'originalr'): return auto_augment_policy_originalr(hparams) elif (name == 'v0'): return auto_augment_policy_v0(hparams) eli...
def register_Ns3TransmissionModesLayers_methods(root_module, cls): cls.add_constructor([]) cls.add_constructor([param('ns3::TransmissionModesLayers const &', 'arg0')]) cls.add_method('TxMode2LayerNum', 'uint8_t', [param('uint8_t', 'txMode')], is_static=True) return
class L2Loss(_Loss): logger = logging.getLogger() def forward(self, state_a, state_b): if (type(state_a) is tuple): losses = 0.0 for (s_a, s_b) in zip(state_a, state_b): losses += torch.pow((s_a - s_b), 2) else: losses = torch.pow((state_a - st...
class BitConfig(BackboneConfigMixin, PretrainedConfig): model_type = 'bit' layer_types = ['preactivation', 'bottleneck'] supported_padding = ['SAME', 'VALID'] def __init__(self, num_channels=3, embedding_size=64, hidden_sizes=[256, 512, 1024, 2048], depths=[3, 4, 6, 3], layer_type='preactivation', hidde...
class HandBlockEnv(ManipulateEnv): def __init__(self, max_step=100, target_position='random', target_rotation='xyz', reward_type='sparse', distance_threshold=0.01, rotation_threshold=0.1): self.num_step = 0 self.max_step = max_step super(HandBlockEnv, self).__init__(model_path=MANIPULATE_BLO...
def layout_grid(img, grid_w=None, grid_h=1, float_to_uint8=True, chw_to_hwc=True, to_numpy=True): (batch_size, channels, img_h, img_w) = img.shape if (grid_w is None): grid_w = (batch_size // grid_h) assert (batch_size == (grid_w * grid_h)) if float_to_uint8: img = ((img * 127.5) + 128)....
.parametrize('tifunc,npfunc', [((lambda x: ti.sqrt(x)), (lambda x: np.sqrt(x))), ((lambda x: ti.rsqrt(x)), (lambda x: (1 / np.sqrt(x)))), ((lambda x: ti.exp(x)), (lambda x: np.exp(x))), ((lambda x: ti.log(x)), (lambda x: np.log(x)))]) _has_autograd _utils.test() def test_unary(tifunc, npfunc): grad_test(tifunc, npf...
def test_count_string_tokens_empty_input(): assert (count_string_tokens('', model_name='gpt-3.5-turbo-0301') == 0)
def test_skipper(): def f(): pass class c(): def __init__(self): self.me = 'I think, therefore...' docstring = ' Header\n\n >>> something # skip if not HAVE_AMODULE\n >>> something + else\n >>> a = 1 # skip if not HAVE_BMODULE\n >>> som...
def tensorize(arr): ret = torch.from_numpy(arr).float().cuda() if (len(arr.shape) == 1): ret = ret.reshape((- 1), 1) return ret
def extract_embeddings_vggish(annotation_path, dataset_dir, output_dir, vggish_resource_dir, frame_duration=0.96, hop_duration=0.96, progress=True, vggish_embedding_size=128): print('* Loading annotations.') annotation_data = pd.read_csv(annotation_path).sort_values('audio_filename') extract_vggish_embeddin...
def main(args): base_path = f'{args.dpath}/image' if (not os.path.exists(base_path)): assert f"args.dpath ({args.dpath}) must contain 'image' directory" base_opath = f'{args.dpath}/mask' os.makedirs(base_opath, exist_ok=True) fpaths = glob.glob(f'{base_path}/*') for fpath in fpaths: ...
def _file_rendezvous_handler(url, **kwargs): def _error(msg): return _rendezvous_error(('file:// rendezvous: ' + msg)) result = urlparse(url) path = result.path if (sys.platform == 'win32'): import urllib.request path = urllib.request.url2pathname(result.path) if (not path): ...
def calculate_contrastive_empowerment(discriminator, obs, next_obs, latents, num_prior_samples=512, distribution_type='uniform', split_group=(4096 * 32), obs_mean=None, obs_std=None, return_diagnostics=False, prior=None): discriminator.eval() if (obs_mean is not None): obs = ((obs - obs_mean) / (obs_std...
def GetBfsTree_PNGraph(Graph, StartNId, FollowOut, FollowIn): return _snap.GetBfsTree_PNGraph(Graph, StartNId, FollowOut, FollowIn)
def get_padding_2d(kernel_size, dilation=(1, 1)): return (int((((kernel_size[0] * dilation[0]) - dilation[0]) / 2)), int((((kernel_size[1] * dilation[1]) - dilation[1]) / 2)))
def load_exp_data(exp_path): exp_data = None try: params_json = load_json(os.path.join(exp_path, 'variant.json')) progress_csv_path = os.path.join(exp_path, 'progress.csv') pkl_paths = [os.path.join(exp_path, 'offline_itr_2000.pt')] exp_data = dict(csv=progress_csv_path, json=par...
class BartTokenizerFast(RobertaTokenizerFast): vocab_files_names = VOCAB_FILES_NAMES pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES slow_tokenizer_class = BartTokenizer
def _test_size_in_bytes(): a = ti.ndarray(ti.i32, 8) assert (a._get_element_size() == 4) assert (a._get_nelement() == 8) b = ti.Vector.ndarray(10, ti.f64, 5) assert (b._get_element_size() == 80) assert (b._get_nelement() == 5)
class Partition0(nn.Module): LAYER_SCOPES = ['T5ForConditionalGeneration/T5Stack[encoder]/StatelessEmbedding[embed_tokens]', 'T5ForConditionalGeneration/T5Stack[encoder]/Dropout[dropout]', 'T5ForConditionalGeneration/T5Stack[encoder]/ModuleList[block]/T5Block[0]', 'T5ForConditionalGeneration/T5Stack[encoder]/Module...
def mass_center(model, sim): mass = np.expand_dims(model.body_mass, 1) xpos = sim.data.xipos return (np.sum((mass * xpos), 0) / np.sum(mass))[0]
_OUTPUTS.register('conv1x1_outputs') class Conv1x1Outputs(nn.Module): def __init__(self, cfg, dim_in, spatial_in): super().__init__() self.dim_in = dim_in[(- 1)] self.spatial_in = spatial_in self.classify = nn.Conv2d(self.dim_in, cfg.MASK.NUM_CLASSES, kernel_size=1, stride=1, padding...
class WorldConstants(): ROBOT_ID = 1 FLOOR_ID = 2 STAGE_ID = 3 FLOOR_HEIGHT = 0.011 ROBOT_HEIGHT = 0.34 ARENA_BB = np.array([[(- 0.15), (- 0.15), 0], [0.15, 0.15, 0.3]]) LINK_IDS = {'robot_finger_60_link_0': 1, 'robot_finger_60_link_1': 2, 'robot_finger_60_link_2': 3, 'robot_finger_60_link_3...
def test_anntorchdataset_getitem_pro_exp(adata): adata.obsm['protein_expression'] = pd.DataFrame(adata.obsm['protein_expression'], index=adata.obs_names) adata_manager = generic_setup_adata_manager(adata, batch_key='batch', protein_expression_obsm_key='protein_expression') bd = AnnTorchDataset(adata_manager...
def main(): args = get_args() device = ('cuda' if torch.cuda.is_available() else 'cpu') transform = transforms.Compose([transforms.Scale()]) transform = transforms.Compose([transforms.Scale((512, 512, 3)), transforms.ToTensor(), transforms.Normalize(mean=(0.5, 0.5, 0.5), std=(0.5, 0.5, 0.5))]) G = G...
def train_imgf(opt): model = img2state(opt).cuda() dataset = Robotdata.get_loader(opt) optimizer = torch.optim.Adam(model.parameters()) loss_fn = nn.MSELoss() for epoch in range(50): for (i, item) in enumerate(dataset): (state, action, result) = item[0] state = state....
def test_control_newton_cr_multiple(state_forms, bcs_list, J, states, controls, adjoints, config_ocp): config_ocp.set('AlgoTNM', 'inner_newton', 'cr') ocp = cashocs.OptimalControlProblem(state_forms, bcs_list, J, states, controls, adjoints, config=config_ocp) ocp.solve(algorithm='newton', rtol=0.01, atol=0....
_tokenizer('space', dataclass=FairseqDataclass) class SpaceTokenizer(object): def __init__(self, *unused): self.space_tok = re.compile('\\s+') def encode(self, x: str) -> str: return self.space_tok.sub(' ', x) def decode(self, x: str) -> str: return x
class Mixed_4c(nn.Module): def __init__(self): super(Mixed_4c, self).__init__() self.branch0 = nn.Sequential(BasicConv3d(512, 160, kernel_size=1, stride=1)) self.branch1 = nn.Sequential(BasicConv3d(512, 112, kernel_size=1, stride=1), SepConv3d(112, 224, kernel_size=3, stride=1, padding=1)) ...
class EfficientDMC(): def __init__(self, clusterings: List[Clustering], measure_type='mutual_info'): self.clusterings = clusterings self.eps = 1e-20 def init_cache(self): P = len(self.combinations) C = self.clusterings[0].ncentroids N = torch.full((P, C), self.eps) ...
def LF_nonunion(c): complication = c.complication.get_span().lower() v = ((complication == 'nonunion') or (complication == 'non-union')) return ((- 1) if v else 0)
class TwoAFCDataset(BaseDataset): def initialize(self, dataroots, load_size=64): if (not isinstance(dataroots, list)): dataroots = [dataroots] self.roots = dataroots self.load_size = load_size self.dir_ref = [os.path.join(root, 'ref') for root in self.roots] self....
class Scanner(): def __init__(self): self.done = False self.flow_level = 0 self.tokens = [] self.fetch_stream_start() self.tokens_taken = 0 self.indent = (- 1) self.indents = [] self.allow_simple_key = True self.possible_simple_keys = {} de...
class ConvBN(nn.Sequential): def __init__(self, c1, c2, k, s, p): super().__init__(nn.Conv2d(c1, c2, k, s, p), nn.BatchNorm2d(c2))
def endstate(state): A = state.add_read('A') t = state.add_tasklet('endtask', {'a'}, {}, 'printf("done %f\\n", a)') state.add_edge(A, None, t, 'a', dace.Memlet(data='A', subset='0'))
class LongT5OnnxConfig(OnnxSeq2SeqConfigWithPast): def inputs(self) -> Mapping[(str, Mapping[(int, str)])]: common_inputs = {'input_ids': {0: 'batch', 1: 'encoder_sequence'}, 'attention_mask': {0: 'batch', 1: 'encoder_sequence'}} if self.use_past: common_inputs['attention_mask'][1] = 'pa...
def _get_generator(seed: int) -> torch.Generator: rng = torch.Generator() rng.manual_seed(seed) return rng