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The dataset generation failed
Error code:   DatasetGenerationError
Exception:    ChunkedEncodingError
Message:      ('Connection broken: IncompleteRead(0 bytes read, 5242888 more expected)', IncompleteRead(0 bytes read, 5242888 more expected))
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 779, in _error_catcher
                  yield
                File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 925, in _raw_read
                  raise IncompleteRead(self._fp_bytes_read, self.length_remaining)
              urllib3.exceptions.IncompleteRead: IncompleteRead(0 bytes read, 5242888 more expected)
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/requests/models.py", line 820, in generate
                  yield from self.raw.stream(chunk_size, decode_content=True)
                File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 1091, in stream
                  data = self.read(amt=amt, decode_content=decode_content)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 980, in read
                  data = self._raw_read(amt)
                         ^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 903, in _raw_read
                  with self._error_catcher():
                       ^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/contextlib.py", line 158, in __exit__
                  self.gen.throw(value)
                File "/usr/local/lib/python3.12/site-packages/urllib3/response.py", line 803, in _error_catcher
                  raise ProtocolError(arg, e) from e
              urllib3.exceptions.ProtocolError: ('Connection broken: IncompleteRead(0 bytes read, 5242888 more expected)', IncompleteRead(0 bytes read, 5242888 more expected))
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1779, in _prepare_split_single
                  for key, table in generator:
                                    ^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 609, in wrapped
                  for item in generator(*args, **kwargs):
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/hdf5/hdf5.py", line 76, in _generate_tables
                  with h5py.File(f, "r") as h5:
                       ^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/h5py/_hl/files.py", line 564, in __init__
                  fid = make_fid(name, mode, userblock_size, fapl, fcpl, swmr=swmr)
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/h5py/_hl/files.py", line 238, in make_fid
                  fid = h5f.open(name, flags, fapl=fapl)
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "h5py/_objects.pyx", line 56, in h5py._objects.with_phil.wrapper
                File "h5py/_objects.pyx", line 57, in h5py._objects.with_phil.wrapper
                File "h5py/h5f.pyx", line 102, in h5py.h5f.open
                File "h5py/h5fd.pyx", line 162, in h5py.h5fd.H5FD_fileobj_read
                File "/usr/local/lib/python3.12/site-packages/fsspec/spec.py", line 1856, in readinto
                  data = self.read(out.nbytes)
                         ^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/utils/file_utils.py", line 844, in read_with_retries
                  out = read(*args, **kwargs)
                        ^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 728, in track_read
                  out = f_read(*args, **kwargs)
                        ^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/huggingface_hub/hf_file_system.py", line 1015, in read
                  return super().read(length)
                         ^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/fsspec/spec.py", line 1846, in read
                  out = self.cache._fetch(self.loc, self.loc + length)
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/fsspec/caching.py", line 189, in _fetch
                  self.cache = self.fetcher(start, end)  # new block replaces old
                               ^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/huggingface_hub/hf_file_system.py", line 969, in _fetch_range
                  r = http_backoff(
                      ^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/huggingface_hub/utils/_http.py", line 310, in http_backoff
                  response = session.request(method=method, url=url, **kwargs)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/requests/sessions.py", line 589, in request
                  resp = self.send(prep, **send_kwargs)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/requests/sessions.py", line 724, in send
                  history = [resp for resp in gen]
                                              ^^^
                File "/usr/local/lib/python3.12/site-packages/requests/sessions.py", line 265, in resolve_redirects
                  resp = self.send(
                         ^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/requests/sessions.py", line 746, in send
                  r.content
                File "/usr/local/lib/python3.12/site-packages/requests/models.py", line 902, in content
                  self._content = b"".join(self.iter_content(CONTENT_CHUNK_SIZE)) or b""
                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/requests/models.py", line 822, in generate
                  raise ChunkedEncodingError(e)
              requests.exceptions.ChunkedEncodingError: ('Connection broken: IncompleteRead(0 bytes read, 5242888 more expected)', IncompleteRead(0 bytes read, 5242888 more expected))
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1342, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 907, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1646, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1832, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset

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a_1
float32
a_2
float32
chirp_mass
float32
dec
float32
distance
float32
inclination
float32
mass_1
float32
mass_2
float32
mass_ratio
float32
phi
float32
phi_12
float32
phi_jl
float32
phic
float32
psi
float32
s1x
float32
s1y
float32
s1z
float32
s2x
float32
s2y
float32
s2z
float32
snr
float32
tilt_1
float32
tilt_2
float32
whitened_bkg
array 2D
whitened_injected
array 2D
whitened_signal
array 2D
0.132638
0.212598
1.476183
0.440216
694.887573
2.280191
2.335073
1.254969
0.537443
-1.775144
5.953039
0.403361
4.037373
2.853332
0.120349
0.05136
0.021703
0.147711
0.133125
-0.075212
11.220628
1.406429
1.932402
[[0.5108880538651458,-0.47651083522487014,-0.31207012392851186,-0.04660678774945981,0.19580924185522(...TRUNCATED)
[[0.5231142049577889,-0.4740286709518906,-0.3099992869563174,-0.045210956977267354,0.196248839565143(...TRUNCATED)
[[0.012111886547223685,0.0024845281082506096,0.0020715929507103457,0.0013962815292797815,0.000438950(...TRUNCATED)
0.014281
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1.886027
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814.183289
1.554106
2.210183
2.123803
0.960917
-1.025218
0.665693
6.281428
6.028352
2.547857
0.012859
-0.000023
-0.006213
0.224465
-0.176904
-0.255682
12.462122
2.020871
2.300636
[[-0.42334735280668756,0.07345079832356109,-0.1585301175102272,0.018150542151466727,-0.2291691968021(...TRUNCATED)
[[-0.402928563780769,0.07647090138222057,-0.1578304337230037,0.018050963765232495,-0.229500035139664(...TRUNCATED)
[[0.020498005534614255,0.003017056289381034,0.0007001588870790571,-0.00009800748984697289,-0.0003325(...TRUNCATED)
0.256894
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-0.146133
0.125957
0.169631
0.021748
0.013814
0.042243
12.113312
0.849559
0.547675
[[0.5665224202274873,0.03597173186093768,0.09746331650601193,0.14616306867471182,-0.253655749550361,(...TRUNCATED)
[[0.5659381692920017,0.03490227328154931,0.09541330159681029,0.15057429888656876,-0.2497453246319728(...TRUNCATED)
[[-0.0007099313695994291,-0.0010663080359196147,-0.002048561818766557,0.004410047200299345,0.0039098(...TRUNCATED)
0.03257
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907.442749
2.235384
1.634382
1.435055
0.878042
0.342371
1.385909
3.813955
1.668176
1.315749
-0.019596
-0.015601
0.020818
-0.084723
0.073346
0.101677
12.69169
0.877369
0.833945
[[-1.251544117638249,0.10098490950102347,0.030766283227287035,-0.11846407026248132,0.432213509447886(...TRUNCATED)
[[-1.2532487108606971,0.10259120560647035,0.033343054042583614,-0.11991083631334422,0.42909295430293(...TRUNCATED)
[[-0.0016575319401292694,0.0016044133193437095,0.0025774177534775796,-0.0014466628085057186,-0.00312(...TRUNCATED)
0.373605
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1.689224
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934.636719
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2.687889
2.132041
0.027368
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0.3103
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0.103298
11.275496
0.59069
0.886611
[[-0.9451473918793599,-0.010154334666425851,-0.03130436460620256,-0.05956653843705813,0.026939975579(...TRUNCATED)
[[-0.9448960404649935,-0.010713043172117494,-0.031981808593155844,-0.06068782456977415,0.02950181275(...TRUNCATED)
[[0.00004458375747419148,-0.0005531690069304632,-0.0006741621028094778,-0.001122362771532646,0.00255(...TRUNCATED)
0.228106
0.340577
1.310226
0.102883
606.432068
0.873127
1.611998
1.406513
0.872528
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5.477046
5.476353
3.30203
0.873803
0.145616
-0.151996
-0.087896
0.260237
-0.000181
-0.219703
11.545363
1.966361
2.271937
[[0.928858090799905,-0.19433427762304312,0.09615794545177847,0.27092492089295084,0.24371138895977706(...TRUNCATED)
[[0.9228856400827439,-0.19592318677778356,0.09486439359339208,0.27036071455179966,0.2440101661149028(...TRUNCATED)
[[-0.00607008913943698,-0.001590661728062555,-0.0012962453942596103,-0.00056233180790942,0.000303117(...TRUNCATED)
0.16326
0.189812
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893.692139
2.159919
1.801761
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0.992051
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3.069793
0.12302
0.04181
-0.098853
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14.45129
2.221182
2.941541
[[-1.6371117911760338,0.2533690397849764,-0.1926435936009726,-0.08498662225352203,-0.174275751059941(...TRUNCATED)
[[-1.655611405228846,0.24995592821410162,-0.19510987374321356,-0.08654308637805225,-0.17475460010407(...TRUNCATED)
[[-0.018530100613245767,-0.0034130609585147492,-0.002465104604546704,-0.0015563478291564302,-0.00047(...TRUNCATED)
0.176649
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2.159362
1.275607
0.590733
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4.809042
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3.348222
1.60893
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0.074342
0.108366
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-0.005553
11.511329
0.910368
1.634617
[[-0.05906546787115546,-0.1578955978829909,0.19486455101166614,0.04735822612665856,-0.11164285808723(...TRUNCATED)
[[-0.0373178887380724,-0.1532120197936032,0.19696549645956918,0.047642125228227195,-0.11280314214476(...TRUNCATED)
[[0.021705662912164744,0.0046848606497519926,0.0021009312793212626,0.0002833554955397278,-0.00116034(...TRUNCATED)
0.350441
0.31102
1.601859
0.196206
649.574341
2.266205
2.028328
1.67236
0.824502
-1.539207
2.586654
1.396045
3.119108
2.918881
0.034879
0.197556
0.28734
0.111531
-0.279086
-0.08003
14.235178
0.609493
1.831039
[[-1.4370049241295024,-0.32183395970277046,0.07884177025867768,-0.023059451606906693,-0.135956798767(...TRUNCATED)
[[-1.4395669576032024,-0.32193690615072307,0.08033539833375343,-0.021341303101032678,-0.134572542451(...TRUNCATED)
[[-0.0025563014233071393,-0.00010185691891051266,0.0014909226205316456,0.001721398413998949,0.001383(...TRUNCATED)
0.050068
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928.172729
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1.630054
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4.741426
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0.24179
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10.266898
0.385007
2.165835
[[-1.0085911678869346,-0.3139898766747979,-0.0867876532708081,0.012932721741354776,-0.05387678981226(...TRUNCATED)
[[-1.0137946608575312,-0.31384719124066557,-0.0847058162793768,0.015096833868175775,-0.0524856914764(...TRUNCATED)
[[-0.005185916565675295,0.00013910455745910118,0.002083269725772033,0.002167080430832048,0.001391153(...TRUNCATED)
End of preview.

PhyTS Dataset

Abstract

We introduce PhyTS, a benchmark suite of precision scientific time series datasets for machine learning, spanning experiments in gravitational-wave detection, dark matter searches, neutrino mass determination, and stellar variability detection. Despite their diverse scientific goals, these domains share a common challenge: recovering weak, structured signals and estimating underlying physical parameters from noise-dominated measurements. Unlike standard sequence modeling benchmarks such as audio and speech, these data exhibit non-Gaussian and nonstationary noise, long-range temporal correlations, detector-specific systematics, irregular sampling, and signals that are sparse, weak, or only partially modeled. As a result, they provide a challenging testbed for evaluating whether modern AI methods can support downstream scientific inference. We provide standardized tasks, data splits, and evaluation protocols for denoising, signal recovery, and parameter inference across physics domains, along with baseline results. By unifying diverse weak-signal inference problems under a common framework, this benchmark aims to enable reproducible evaluation and accelerate the development of more robust, interpretable, and physically grounded methods for scientific time series analysis.

📌 Github repo: kyoon-mit/TimeSeriesPhysics

LIGO

LIGO Dataset Field Description

TESS

The TESS dataset is broken into training, validation and test data, which are identically constructed. There is a set for classification '/tess/split/tess_classification_{train,val,test}.parquet' and one for regression '/tess/split/tess_regression_{train,val,test}.parquet. The dataset was split 80/10/10 into training, validation, and test sets. Since multiple TESS light curves, from different TESS sectors, are available per unique Gaia Data Release 3 (DR3) identifier (ID), the split ensures that no Gaia DR3 ID appears in more than one split to avoid label leakage, with the exception of when different light curves for the same Gaia DR3 ID have different labels due to variations in dominant variability detected in separate TESS sectors. The data includes the following

TESS Dataset Field Description

Parameter Type / Size Description
GaiaID dtype=int Unique Gaia DR3 Identifier
TIC dtype=int TESS Input Catalog Identifier
sector dtype=int TESS Observing Sector (https://tess.mit.edu/observations/)
label dtype=string Class label [FOR THE CLASSIFICATION TASK]
frot dtype=double Near-core rotation rate of the star [FOR THE REGRESSION TASK]
frot_err dtype=double Near-core rotation rate error [FOR THE REGRESSION TASK]
time dtype=list Time stamps in BTJD (Barycentric TESS Julian Date. Corrected for light travel time to solar system barycenter)
flux dtype=list Time series measurements in normalized flux

TIDMAD

The TIDMAD dataset is broken into training and validation data which are identically constructed differing only by the time at which the detector data was taken. This temporal difference results in variable detector noise conditions. There are 20 hdf5 files (~ 4 GB/file) in both training and validation datasets. The total dataset size is 163 GB. Each file contains ~ 200 examples and the associated meta data. Each example is a set of ch1 time series, ch2 time series, and injected frequency. This data in each hdf5 file includes the following

TIDMAD Dataset Field Description

Parameter Type / Size Description
chunk_length dtype=int Number of samples per example
n_chunks dtype=int Number of examples per file
sample_rate_hz dtype=int Data taking sample rate in Hz
signal_freq_choices size=(618,1), dtype=int Array of signal frequencies injected across the full dataset, all files
signal_frequency size=(200,1), dtype=int Injected frequency for the example in Hz (signal_frequency[i] is the injected signal frequency for example i)
time_series_ch1 size=(200,10M), dtype=int Noisy time series for the example in DAQ units. Conversion factor from DAQ units to mV is 40mV/128. (time_series_ch1[i] is the ch1 time series for example i)
time_series_ch2 size=(200,10M), dtype=int Signal time series for the example in DAQ units. Conversion factor from DAQ units to mV is 40mV/128. (time_series_ch2[i] is the ch2 time series for example i)

Project 8

The Project 8 dataset is broken into training, validation, and test datasets which are identically constructed.
All contain a set of electron events with randomized energy, pitch angle, and radius parameters. The data are divided into hdf5 files with ~5000 electrons per file; each file is about 5 GB, with the exception of one, which has fewer electrons and is smaller.
There are about 50,000 electrons total in the dataset. The total dataset size is about 50 GB.
The train dataset contains 8 hdf5 files, the validation dataset has 1 hdf5 file, and the test dataset has 2 (including the smaller file). The experiments presented in the publication use output_ts_I + output_ts_I_cav_noise and output_ts_Q + output_ts_Q_cav_noise as inputs (noisy in-phase and quadrature time series). The target for regression is energy_eV (truth value for energy of the electron, in eV). This data in each hdf5 file includes the following

Project 8 Dataset Field Description

Parameter Type / Size Description
output_ts_I size=(24576,1), dtype=float32 In-phase signal time series
output_ts_Q size=(24576,1), dtype=float32 Quadrature signal time series
output_ts_I_cav_noise size=(24576,1), dtype=float32 In-phase cavity (frequency-dependent) noise time series
output_ts_Q_cav_noise size=(24576,1), dtype=float32 Quadrature cavity (frequency-dependent) noise time series
output_ts_I_gauss_noise size=(24576,1), dtype=float32 In-phase Gaussian noise time series
output_ts_Q_gauss_noise size=(24576,1), dtype=float32 Quadrature Gaussian noise time series
energy_eV dtype=float32 Truth value for energy of the electron (target for regression), in eV
avg_carrier_frequency_Hz dtype=float32 Truth value for average cyclotron frequency of the electron, in Hz
start_carrier_frequency_Hz dtype=float32 Truth value for starting cyclotron frequency of the electron, in Hz
avg_axial_frequency_Hz dtype=float32 Truth value for average axial frequency of the electron, in Hz
pitch_angle_deg dtype=float32 Truth value for pitch angle (direction of the electron’s momentum with respect to the magnetic field) of the electron, in degrees
radius_input_m dtype=float32 Truth value for starting radius of the electron before one trajectory step (input value), in meters
radius_m dtype=float32 Truth value for starting radius of the electron after one trajectory step, in meters
radius_phase dtype=float32 Truth value for instantaneous polar angle in the X-Y plane of the electron’s starting position, in meters
slope_Hz dtype=float32 Truth value for slope of the track in spectrogram space, in Hz/s
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